<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-02-20 12:51:34"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E541101" ref_strand="+" ref_description="SGN-E541101 [TUS-61-L12]">
      <seq>gtcattcctcctcaaaaagctgtgtctgcgaagatcaactaatatgaggtggtccaatggcacactgcaatacaatttgttgagctactgtgttgagttcaagcccccacggtgctactggttccaaaaactcttccgaatcaatgagctcttggaaaaacacaagtacaagaaggatgaactagtcaccccagggttaaaaaagctgatctttgaccatttcaaaaagtttgccggagaaagtaataacaagcatgatcatccagtcttatgcacaagtagaggcactgaagcacttaaaggaaatggctgttcttccctagtttggtcgaccgagttagaatttgatcaaagtttccttatttggcacattgctactgatctatgctattacactgacgatagtagtggtactcgttccatcgaatccaaacaaagcaagcagttatcagattatatgttgtatcttttagtagtgtgtccctttatgctgccaataggacttgggatgatcagatttagagacacatgtgctgaagccaaagagttttttacagagaggaaagtcggaaaagacttaactatagctagtcgcaagttgctaacagtgaatactgaagttggacctgcaaaagtgaaaggggataggagcaagagcgtgttgtttgatgcgtgcatacttgccaaatcattgaaagcaaaggggtatcagagaaaatgggaaatcatcagtgaaatatgggtggaaaatgctgcgtatgctgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="373" stop="1739"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="673" g_stop="1439" g_length="767"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="767" r_length="767" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E541101" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="673" e_stop="1439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATTCCTCCTCAAAAAGCTGTGTCTGCGAAGATCAACTAATATGAGGTGGTCCAATGGCACACTGCAATACAATTTGTTGAGCTACTGTGTTGAGTTCAAGCCCCCACGGTGCTACTGGTTCCAAAAACTCTTCCGAATCAATGAGCTCTTGGAAAAACACAAGTACAAGAAGGATGAACTAGTCACCCCAGGGTTAAAAAAGCTGATCTTTGACCATTTCAAAAAGTTTGCCGGAGAAAGTAATAACAAGCATGATCATCCAGTCTTATGCACAAGTAGAGGCACTGAAGCACTTAAAGGAAATGGCTGTTCTTCCCTAGTTTGGTCGACCGAGTTAGAATTTGATCAAAGTTTCCTTATTTGGCACATTGCTACTGATCTATGCTATTACACTGACGATAGTAGTGGTACTCGTTCCATCGAATCCAAACAAAGCAAGCAGTTATCAGATTATATGTTGTATCTTTTAGTAGTGTGTCCCTTTATGCTGCCAATAGGACTTGGGATGATCAGATTTAGAGACACATGTGCTGAAGCCAAAGAGTTTTTTACAGAGAGGAAAGTCGGAAAAGACTTAACTATAGCTAGTCGCAAGTTGCTAACAGTGAATACTGAAGTTGGACCTGCAAAAGTGAAAGGGGATAGGAGCAAGAGCGTGTTGTTTGATGCGTGCATACTTGCCAAATCATTGAAAGCAAAGGGTAATCAGAGAAAATGGGAAATCATCAGTGAAGTATGGGTGGAAATGCTTGCGTATGCTGCTA</genome_strand>
        <mrna_strand>GTCATTCCTCCTCAAAAAGCTGTGTCTGCGAAGATCAACTAATATGAGGTGGTCCAATGGCACACTGCAATACAATTTGTTGAGCTACTGTGTTGAGTTCAAGCCCCCACGGTGCTACTGGTTCCAAAAACTCTTCCGAATCAATGAGCTCTTGGAAAAACACAAGTACAAGAAGGATGAACTAGTCACCCCAGGGTTAAAAAAGCTGATCTTTGACCATTTCAAAAAGTTTGCCGGAGAAAGTAATAACAAGCATGATCATCCAGTCTTATGCACAAGTAGAGGCACTGAAGCACTTAAAGGAAATGGCTGTTCTTCCCTAGTTTGGTCGACCGAGTTAGAATTTGATCAAAGTTTCCTTATTTGGCACATTGCTACTGATCTATGCTATTACACTGACGATAGTAGTGGTACTCGTTCCATCGAATCCAAACAAAGCAAGCAGTTATCAGATTATATGTTGTATCTTTTAGTAGTGTGTCCCTTTATGCTGCCAATAGGACTTGGGATGATCAGATTTAGAGACACATGTGCTGAAGCCAAAGAGTTTTTTACAGAGAGGAAAGTCGGAAAAGACTTAACTATAGCTAGTCGCAAGTTGCTAACAGTGAATACTGAAGTTGGACCTGCAAAAGTGAAAGGGGATAGGAGCAAGAGCGTGTTGTTTGATGCGTGCATACTTGCCAAATCATTGAAAGCAAAGGGGTATCAGAGAAAATGGGAAATCATCAGTGAAATATGGGTGGAAAATGCTGCGTATGCTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E296447" ref_strand="+" ref_description="SGN-E296447 [cLET-19-B1]">
      <seq>tcattcctcctcaaaaagctgtgtctgcgaagatcaactaatatgaggtggtccaatggcacactgcaatacaatttgttgagctactgtgttgagttcaagcccccacggtgctactggttccaaaaactcttccgaatcaatgagctcttggaaaaacacaagtacaagaaggatgaactagtcaccccagggttaaaaaagctgatctttgaccatttcaaaaagtttgccggagaaagtaataacaagcatgatcatccagtcttatgcacaagtagaggcactgaagcacttaaaggaaatggctgttcttccctagtttggtcgaccgagttagaatttgatcaaagtttccttatttggcacattgctactgatctatgctattacactgacgatagtagtggtactcgttccatcgaatccaaacaaagcaagcagttatcagattatatgttgtatcttttagtagtgtgtccctttatgctgccaataggacttgggatgatcagatttagagacacatgtgctgaagccaaagagttttttacagagaggaaagtcggaaaagacttaactatagctagtcgcaagttgctaacagtgaatactgaagttggacctgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="374" stop="1604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="674" g_stop="1304" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="631" r_length="631" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E296447" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296447" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="674" e_stop="1304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATTCCTCCTCAAAAAGCTGTGTCTGCGAAGATCAACTAATATGAGGTGGTCCAATGGCACACTGCAATACAATTTGTTGAGCTACTGTGTTGAGTTCAAGCCCCCACGGTGCTACTGGTTCCAAAAACTCTTCCGAATCAATGAGCTCTTGGAAAAACACAAGTACAAGAAGGATGAACTAGTCACCCCAGGGTTAAAAAAGCTGATCTTTGACCATTTCAAAAAGTTTGCCGGAGAAAGTAATAACAAGCATGATCATCCAGTCTTATGCACAAGTAGAGGCACTGAAGCACTTAAAGGAAATGGCTGTTCTTCCCTAGTTTGGTCGACCGAGTTAGAATTTGATCAAAGTTTCCTTATTTGGCACATTGCTACTGATCTATGCTATTACACTGACGATAGTAGTGGTACTCGTTCCATCGAATCCAAACAAAGCAAGCAGTTATCAGATTATATGTTGTATCTTTTAGTAGTGTGTCCCTTTATGCTGCCAATAGGACTTGGGATGATCAGATTTAGAGACACATGTGCTGAAGCCAAAGAGTTTTTTACAGAGAGGAAAGTCGGAAAAGACTTAACTATAGCTAGTCGCAAGTTGCTAACAGTGAATACTGAAGTTGGACCTGCAA</genome_strand>
        <mrna_strand>TCATTCCTCCTCAAAAAGCTGTGTCTGCGAAGATCAACTAATATGAGGTGGTCCAATGGCACACTGCAATACAATTTGTTGAGCTACTGTGTTGAGTTCAAGCCCCCACGGTGCTACTGGTTCCAAAAACTCTTCCGAATCAATGAGCTCTTGGAAAAACACAAGTACAAGAAGGATGAACTAGTCACCCCAGGGTTAAAAAAGCTGATCTTTGACCATTTCAAAAAGTTTGCCGGAGAAAGTAATAACAAGCATGATCATCCAGTCTTATGCACAAGTAGAGGCACTGAAGCACTTAAAGGAAATGGCTGTTCTTCCCTAGTTTGGTCGACCGAGTTAGAATTTGATCAAAGTTTCCTTATTTGGCACATTGCTACTGATCTATGCTATTACACTGACGATAGTAGTGGTACTCGTTCCATCGAATCCAAACAAAGCAAGCAGTTATCAGATTATATGTTGTATCTTTTAGTAGTGTGTCCCTTTATGCTGCCAATAGGACTTGGGATGATCAGATTTAGAGACACATGTGCTGAAGCCAAAGAGTTTTTTACAGAGAGGAAAGTCGGAAAAGACTTAACTATAGCTAGTCGCAAGTTGCTAACAGTGAATACTGAAGTTGGACCTGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E541098" ref_strand="+" ref_description="SGN-E541098 [TUS-61-L12]">
      <seq>tttcttttttcatcactacgttgtggatgttattccctggaaaacatcaaaagttatgattttccaatgtagagtgttcaagttgatcacccttacgcatcgtgaattacaagtagtaaagatacatgctaaaattcaactgatttttcttagcctgtctctactgtaatatcatgctaaaaagcttaaacgattagagagaacacacatttatttacctaactatgtcttgatcagcacaagaaccggagtttcttacttgacaatgagcttggctctagcatgacctctgtttatctgaaattgctctgtgatgccaagatgtgccataagaagccagacatgagtaagaagctctcctcctttacgtagctgttgagcgtgatggttccctctgcaatgtgtagcagcatacgcaagcatttccacccatacttcactgatgatttcccattttctctgattaccctttgctttcaatgatttggcaagtatgcacgcatcaaacaacacgctcttgctcctatcccctttcacttttgcaggtccaacttcagtattcactgttagcaacttgcgactagctatagttaagtcttttccgactttcctctctgtaaaaaactctttggcttcagcacatgtgtctctaaatctgatcatcccaagtcctattggcagcataaagggacacactactaaaagatacaacatataatctgataactgcttgctttgtttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="2138" stop="800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1843" g_stop="1100" g_length="744"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="744" r_length="744" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E541098" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>744</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541098" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1843" e_stop="1100"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACTCTTCAATCACTACGTTGTGGATGTTATTCCCTGGAAACAATCAAAAGTTATGATTTTCCAATGTAGAGTGTTCAAGTTGATCACCCTTACGCATCGTGAATTACAAGTAGTAAAGATACATGCTAAAATTCAACTGATTTTTCTTAGCCTGTCTCTACTGTAATATCATGCTAAAAAGCTTAAACGATTAGAGAGAACACACATTTATTTACCTAACTATGTCTTGATCAGCACAAGAACCGGAGTTTCTTACTTGACAATGAGCTTGGCTCTAGCATGACCTCTGTTTATCTGAAATTGCTCTGTGATGCCAAGATGTGCCATAAGAAGCCAGACATGAGTAAGAAGCTCTCCTCCTTTACGTAGCTGTTGAGCGTGATGGTTCCCTCTGCAATGTGTAGCAGCATACGCAAGCATTTCCACCCATACTTCACTGATGATTTCCCATTTTCTCTGATTACCCTTTGCTTTCAATGATTTGGCAAGTATGCACGCATCAAACAACACGCTCTTGCTCCTATCCCCTTTCACTTTTGCAGGTCCAACTTCAGTATTCACTGTTAGCAACTTGCGACTAGCTATAGTTAAGTCTTTTCCGACTTTCCTCTCTGTAAAAAACTCTTTGGCTTCAGCACATGTGTCTCTAAATCTGATCATCCCAAGTCCTATTGGCAGCATAAAGGGACACACTACTAAAAGATACAACATATAATCTGATAACTGCTTGCTTTGTTTGGA</genome_strand>
        <mrna_strand>TTTCTTTTTTCATCACTACGTTGTGGATGTTATTCCCTGGAAAACATCAAAAGTTATGATTTTCCAATGTAGAGTGTTCAAGTTGATCACCCTTACGCATCGTGAATTACAAGTAGTAAAGATACATGCTAAAATTCAACTGATTTTTCTTAGCCTGTCTCTACTGTAATATCATGCTAAAAAGCTTAAACGATTAGAGAGAACACACATTTATTTACCTAACTATGTCTTGATCAGCACAAGAACCGGAGTTTCTTACTTGACAATGAGCTTGGCTCTAGCATGACCTCTGTTTATCTGAAATTGCTCTGTGATGCCAAGATGTGCCATAAGAAGCCAGACATGAGTAAGAAGCTCTCCTCCTTTACGTAGCTGTTGAGCGTGATGGTTCCCTCTGCAATGTGTAGCAGCATACGCAAGCATTTCCACCCATACTTCACTGATGATTTCCCATTTTCTCTGATTACCCTTTGCTTTCAATGATTTGGCAAGTATGCACGCATCAAACAACACGCTCTTGCTCCTATCCCCTTTCACTTTTGCAGGTCCAACTTCAGTATTCACTGTTAGCAACTTGCGACTAGCTATAGTTAAGTCTTTTCCGACTTTCCTCTCTGTAAAAAACTCTTTGGCTTCAGCACATGTGTCTCTAAATCTGATCATCCCAAGTCCTATTGGCAGCATAAAGGGACACACTACTAAAAGATACAACATATAATCTGATAACTGCTTGCTTTGTTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E350224" ref_strand="+" ref_description="SGN-E350224 [cTOS-4-D1]">
      <seq>ctgaagccaaagagttttttacagagaggaaagtcggaaaagacttaactatagctagtcgcaagttgctaacagtgaatactgaagttggacctgcaaaagtgaaaggggataggagcaagagcgtgttgtttgatgcgtgcatacttgccaaatcattgaaagcaaagggtaatcagagaaaatgggaaatcatcagtgaagtatgggtggaaatgcttgcgtatgctgctacacattgcagagggaaccatcacgctcaacagctacgtaaaggaggagagcttcttactcatgtctggcttcttatggcacatcttggcatcacagagcaatttcagataaacagaggtcatgctagagccaagctcattgtcaagtaagaaactccggttcttgtgctgatcaagacatagttaggtaaataaatgtgtgttctctctaatcgtttaagctttttagcatgatattacagtagagacaggctaagaaaaatcagttgaattttagcatgtatctttactacttgtaattcacgatgcgtaagggtgatcaacttgaacactctacattggaaaatcataacttttgattgtttccagggaataacatccacaacgtagtgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="906" stop="2133"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1206" g_stop="1833" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E350224" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1206" e_stop="1833"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGCCAAAGAGTTTTTTACAGAGAGGAAAGTCGGAAAAGACTTAACTATAGCTAGTCGCAAGTTGCTAACAGTGAATACTGAAGTTGGACCTGCAAAAGTGAAAGGGGATAGGAGCAAGAGCGTGTTGTTTGATGCGTGCATACTTGCCAAATCATTGAAAGCAAAGGGTAATCAGAGAAAATGGGAAATCATCAGTGAAGTATGGGTGGAAATGCTTGCGTATGCTGCTACACATTGCAGAGGGAACCATCACGCTCAACAGCTACGTAAAGGAGGAGAGCTTCTTACTCATGTCTGGCTTCTTATGGCACATCTTGGCATCACAGAGCAATTTCAGATAAACAGAGGTCATGCTAGAGCCAAGCTCATTGTCAAGTAAGAAACTCCGGTTCTTGTGCTGATCAAGACATAGTTAGGTAAATAAATGTGTGTTCTCTCTAATCGTTTAAGCTTTTTAGCATGATATTACAGTAGAGACAGGCTAAGAAAAATCAGTTGAATTTTAGCATGTATCTTTACTACTTGTAATTCACGATGCGTAAGGGTGATCAACTTGAACACTCTACATTGGAAAATCATAACTTTTGATTGTTTCCAGGGAATAACATCCACAACGTAGTGATT</genome_strand>
        <mrna_strand>CTGAAGCCAAAGAGTTTTTTACAGAGAGGAAAGTCGGAAAAGACTTAACTATAGCTAGTCGCAAGTTGCTAACAGTGAATACTGAAGTTGGACCTGCAAAAGTGAAAGGGGATAGGAGCAAGAGCGTGTTGTTTGATGCGTGCATACTTGCCAAATCATTGAAAGCAAAGGGTAATCAGAGAAAATGGGAAATCATCAGTGAAGTATGGGTGGAAATGCTTGCGTATGCTGCTACACATTGCAGAGGGAACCATCACGCTCAACAGCTACGTAAAGGAGGAGAGCTTCTTACTCATGTCTGGCTTCTTATGGCACATCTTGGCATCACAGAGCAATTTCAGATAAACAGAGGTCATGCTAGAGCCAAGCTCATTGTCAAGTAAGAAACTCCGGTTCTTGTGCTGATCAAGACATAGTTAGGTAAATAAATGTGTGTTCTCTCTAATCGTTTAAGCTTTTTAGCATGATATTACAGTAGAGACAGGCTAAGAAAAATCAGTTGAATTTTAGCATGTATCTTTACTACTTGTAATTCACGATGCGTAAGGGTGATCAACTTGAACACTCTACATTGGAAAATCATAACTTTTGATTGTTTCCAGGGAATAACATCCACAACGTAGTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E357927" ref_strand="+" ref_description="SGN-E357927 [cTOS-24-F10]">
      <seq>agacttaactatagctagtcgcaagttgctaacagtgaatactgaagttggacctgcaaaagtgaaaggggataggagcaagagcgtgttgtttgatgcgtgcatacttgccaaatcattgaaagcaaagggtaatcagagaaaatgggaaatcatcagtgaagtatgggtggaaatgcttgcgtatgctgctacacattgcagagggaaccatcacgctcaacagctacgtaaaggaggagagcttcttactcatgtctggcttcttatggcacatcttggcatcacagagcaatttcagataaacagaggtcatgctagagccaagctcattgtcaagtaagaaactccggttcttgtgctgatcaagacatagttaggtaaataaatgtgtgttctctctaatcgtttaagctttttagcatgatattacagtagagacaggctaagaaaaatcagttgaattttagcatgtatctttactacttgtaattcacgatgcgtaagggtgatcaacttgaacactctacattggaaaatcataacttttgattgtttccagggaataacatccacaacgtagtgattgaagagtaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="946" stop="2140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1246" g_stop="1847" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E357927" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1246" e_stop="1847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTTAACTATAGCTAGTCGCAAGTTGCTAACAGTGAATACTGAAGTTGGACCTGCAAAAGTGAAAGGGGATAGGAGCAAGAGCGTGTTGTTTGATGCGTGCATACTTGCCAAATCATTGAAAGCAAAGGGTAATCAGAGAAAATGGGAAATCATCAGTGAAGTATGGGTGGAAATGCTTGCGTATGCTGCTACACATTGCAGAGGGAACCATCACGCTCAACAGCTACGTAAAGGAGGAGAGCTTCTTACTCATGTCTGGCTTCTTATGGCACATCTTGGCATCACAGAGCAATTTCAGATAAACAGAGGTCATGCTAGAGCCAAGCTCATTGTCAAGTAAGAAACTCCGGTTCTTGTGCTGATCAAGACATAGTTAGGTAAATAAATGTGTGTTCTCTCTAATCGTTTAAGCTTTTTAGCATGATATTACAGTAGAGACAGGCTAAGAAAAATCAGTTGAATTTTAGCATGTATCTTTACTACTTGTAATTCACGATGCGTAAGGGTGATCAACTTGAACACTCTACATTGGAAAATCATAACTTTTGATTGTTTCCAGGGAATAACATCCACAACGTAGTGATTGAAGAGTCTTGATC</genome_strand>
        <mrna_strand>AGACTTAACTATAGCTAGTCGCAAGTTGCTAACAGTGAATACTGAAGTTGGACCTGCAAAAGTGAAAGGGGATAGGAGCAAGAGCGTGTTGTTTGATGCGTGCATACTTGCCAAATCATTGAAAGCAAAGGGTAATCAGAGAAAATGGGAAATCATCAGTGAAGTATGGGTGGAAATGCTTGCGTATGCTGCTACACATTGCAGAGGGAACCATCACGCTCAACAGCTACGTAAAGGAGGAGAGCTTCTTACTCATGTCTGGCTTCTTATGGCACATCTTGGCATCACAGAGCAATTTCAGATAAACAGAGGTCATGCTAGAGCCAAGCTCATTGTCAAGTAAGAAACTCCGGTTCTTGTGCTGATCAAGACATAGTTAGGTAAATAAATGTGTGTTCTCTCTAATCGTTTAAGCTTTTTAGCATGATATTACAGTAGAGACAGGCTAAGAAAAATCAGTTGAATTTTAGCATGTATCTTTACTACTTGTAATTCACGATGCGTAAGGGTGATCAACTTGAACACTCTACATTGGAAAATCATAACTTTTGATTGTTTCCAGGGAATAACATCCACAACGTAGTGATTGAAGAGTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E351049" ref_strand="+" ref_description="SGN-E351049 [cTOS-6-K10]">
      <seq>agacttaactatagctagtcgcaagttgctaacagtgaatactgaagttggacctgcaaaagtgaaaggggataggagcaagagcgtgttgtttgatgcgtgcatacttgccaaatcattgaaagcaaagggtaatcagagaaaatgggaaatcatcagtgaagtatgggtggaaatgcttgcgtatgctgctacacattgcagagggaaccatcacgctcaacagctacgtaaaggaagagagcttcttactcatgtctggcttcttatggcacatcttggcatcacagaacaatttccgataaacagaaggcatgctagaaccaagctccttgtcaagtaagaaactccgggtcttgtgctgatccagacataattaaggaaataaatgggtggtctctccaatccgttaagctttttagcctgatattaccgtagagacaggcttagaaaaatcaagtgaattttaacatggatccttactacctggaattcaccaagcgtaagggtgatccacttgaacactccacattggaaaatcattacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="946" stop="2094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1246" g_stop="1794" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E351049" ref_strand="+">
        <total_alignment_score>0.942</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351049" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1246" e_stop="1794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACTTAACTATAGCTAGTCGCAAGTTGCTAACAGTGAATACTGAAGTTGGACCTGCAAAAGTGAAAGGGGATAGGAGCAAGAGCGTGTTGTTTGATGCGTGCATACTTGCCAAATCATTGAAAGCAAAGGGTAATCAGAGAAAATGGGAAATCATCAGTGAAGTATGGGTGGAAATGCTTGCGTATGCTGCTACACATTGCAGAGGGAACCATCACGCTCAACAGCTACGTAAAGGAGGAGAGCTTCTTACTCATGTCTGGCTTCTTATGGCACATCTTGGCATCACAGAGCAATTTCAGATAAACAGAGGTCATGCTAGAGCCAAGCTCATTGTCAAGTAAGAAACTCCGGTTCTTGTGCTGATCAAGACATAGTTAGGTAAATAAATGTGTGTTCTCTCTAATCGTTTAAGCTTTTTAGCATGATATTACAGTAGAGACAGGCTAAGAAAAATCAGTTGAATTTTAGCATGTATCTTTACTACTTGTAATTCACGATGCGTAAGGGTGATCAACTTGAACACTCTACATTGGAAAATCATAACTTT</genome_strand>
        <mrna_strand>AGACTTAACTATAGCTAGTCGCAAGTTGCTAACAGTGAATACTGAAGTTGGACCTGCAAAAGTGAAAGGGGATAGGAGCAAGAGCGTGTTGTTTGATGCGTGCATACTTGCCAAATCATTGAAAGCAAAGGGTAATCAGAGAAAATGGGAAATCATCAGTGAAGTATGGGTGGAAATGCTTGCGTATGCTGCTACACATTGCAGAGGGAACCATCACGCTCAACAGCTACGTAAAGGAAGAGAGCTTCTTACTCATGTCTGGCTTCTTATGGCACATCTTGGCATCACAGAACAATTTCCGATAAACAGAAGGCATGCTAGAACCAAGCTCCTTGTCAAGTAAGAAACTCCGGGTCTTGTGCTGATCCAGACATAATTAAGGAAATAAATGGGTGGTCTCTCCAATCCGTTAAGCTTTTTAGCCTGATATTACCGTAGAGACAGGCTTAGAAAAATCAAGTGAATTTTAACATGGATCCTTACTACCTGGAATTCACCAAGCGTAAGGGTGATCCACTTGAACACTCCACATTGGAAAATCATTACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E373407" ref_strand="-" ref_description="SGN-E373407 [TUS-31-D14]">
      <seq>tgcatcacaccgtgacttgaggagagcgagagctgcagcattgaacattgtcccgaccagcactggtgcagcaaaggctgtgtctctagtgctacctcagctcaagggaaagcttaatggaattgctctccgagtgccaacacctaatgtttcggttgttgaccttgttataaatgttgaaaagaaaggaatttcagctgaagatgtcaatgcagctttcagaaaggcagctgacggtccgttgaatggcatattggctgtttgtgatgagcctcttgtgtcagttgacttccgatgcagtgatgtttccaccaccatcgactcctctttaaccatggttatgggagacgacatggtcaagattgtcgcttggtatgacaacgagtggggatacagccaacgtgtggtcgacttagctcatctggtagcagacaaatggcccggttcagctgcagaagggagcggagacgccttagaggactactgcaagacaaaccctgcagacaaggaatgcaaagtctacgaataatctctctgctttcttttcctttttttgaaattccgcatggatgatttttgaagctaaattgtttcccttgttcaaaaatttataaatgaacgaacgacagtaaaatcacacagtttggatatcatgtgtacagtcatatagactggtttcaccattaaccaggatgcatttcaacaatgaattctgttttacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="3272" stop="1821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2972" g_stop="2577" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="396" r_length="396" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2576" i_stop="2447" i_length="130">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2446" g_stop="2110" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="733" r_length="337" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E373407" ref_strand="-">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373407" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2972" e_stop="2577"/>
          <exon e_start="2446" e_stop="2110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATCACACCGTGACTTGAGGAGAGCGAGAGCTGCAGCATTGAACATTGTCCCGACCAGCACTGGTGCAGCAAAGGCTGTGTCTCTAGTGCTACCTCAGCTCAAGGGAAAGCTTAATGGAATTGCTCTCCGAGTGCCAACACCTAATGTTTCGGTTGTTGACCTTGTTATAAATGTTGAAAAGAAAGGAATTTCAGCTGAAGATGTCAATGCAGCTTTCAGAAAGGCAGCTGACGGTCCGTTGAATGGCATATTGGCTGTTTGTGATGAGCCTCTTGTGTCAGTTGACTTCCGATGCAGTGATGTTTCCACCACCATCGACTCCTCTTTAACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAGGTAACCTGAACACAATCATTTCGCATACTTATACAACCAACCTGAATACTCATTTACATTAAAAAAACACACATGCATAAGCACACATATACCGTTGATTCACTTGTGATCATACTTGGTAAAATTGCAGCCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACAGTTTGGATATCATGTGTACAGTCATATAGACTGGTTTCACCATTAACCAGGATGCATTTCAACAATGAATTCTGTTTTACATTTCAAGATCT</genome_strand>
        <mrna_strand>TGCATCACACCGTGACTTGAGGAGAGCGAGAGCTGCAGCATTGAACATTGTCCCGACCAGCACTGGTGCAGCAAAGGCTGTGTCTCTAGTGCTACCTCAGCTCAAGGGAAAGCTTAATGGAATTGCTCTCCGAGTGCCAACACCTAATGTTTCGGTTGTTGACCTTGTTATAAATGTTGAAAAGAAAGGAATTTCAGCTGAAGATGTCAATGCAGCTTTCAGAAAGGCAGCTGACGGTCCGTTGAATGGCATATTGGCTGTTTGTGATGAGCCTCTTGTGTCAGTTGACTTCCGATGCAGTGATGTTTCCACCACCATCGACTCCTCTTTAACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAG..................................................................................................................................CCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACAGTTTGGATATCATGTGTACAGTCATATAGACTGGTTTCACCATTAACCAGGATGCATTTCAACAATGAATTCTGTTTTACAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E290435" ref_strand="-" ref_description="SGN-E290435 [cLES-20-B4]">
      <seq>gctgacggtccgttgaatggcatatcggctgtttgtgatgagcctcttgtgtcagttgacttccgatgcagtgatgtttccaccaccatcgactcctctttaaccatggttatgggagacgacatggtcaagattgtcgcttggtatgacaacgagtggggatacagccaacgtgtggtcgacttagctcatctggtagcagacaaatggcccggttcagctgcagaagggagcggagacgccttagaggattactgcaagacaaaccctgcagacaaggaatgcaaagtctacgaataatctctctgctttcttttcctttttttgaaattccgcatggatgatttttgaagctaaattgtttcccttgttcaaaaatttataaatgaacgaacgacagtaaaatcacacagtttggatatcatgtgtacagtcatatagactggtttcaccattaaccaggatgcatttcaacaatgaattctgttttacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="3043" stop="1821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2743" g_stop="2577" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2576" i_stop="2447" i_length="130">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2446" g_stop="2110" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="504" r_length="337" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E290435" ref_strand="-">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290435" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2743" e_stop="2577"/>
          <exon e_start="2446" e_stop="2110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGACGGTCCGTTGAATGGCATATTGGCTGTTTGTGATGAGCCTCTTGTGTCAGTTGACTTCCGATGCAGTGATGTTTCCACCACCATCGACTCCTCTTTAACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAGGTAACCTGAACACAATCATTTCGCATACTTATACAACCAACCTGAATACTCATTTACATTAAAAAAACACACATGCATAAGCACACATATACCGTTGATTCACTTGTGATCATACTTGGTAAAATTGCAGCCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACAGTTTGGATATCATGTGTACAGTCATATAGACTGGTTTCACCATTAACCAGGATGCATTTCAACAATGAATTCTGTTTTACATTTCAAGATCT</genome_strand>
        <mrna_strand>GCTGACGGTCCGTTGAATGGCATATCGGCTGTTTGTGATGAGCCTCTTGTGTCAGTTGACTTCCGATGCAGTGATGTTTCCACCACCATCGACTCCTCTTTAACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAG..................................................................................................................................CCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGATTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACAGTTTGGATATCATGTGTACAGTCATATAGACTGGTTTCACCATTAACCAGGATGCATTTCAACAATGAATTCTGTTTTACAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E215736" ref_strand="-" ref_description="SGN-E215736 [cLEL-15-P20]">
      <seq>tggttatgggagacgacatggtcaagattgtcgcttggtatgacaacgagtggggatacagccaacgtgtggtcgacttagctcatctggtagcagacaaatggcccggttcagctgcagaagggagcggagacgccttagaggactactgcaagacaaaccctgcagacaaggaatgcaaagtctacgaataatctctctgctttcttttcctttttttgaaattccgcatggatgatttttgaagctaaattgtttcccttgttcaaaaatttataaatgaacgaacgacagtaaaatcacacagtttggatatcatgtgtacagtcatatagactggtttcaccattaaccaggatgcatttcaacaatgaattctgttttacatttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="2937" stop="1813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2637" g_stop="2577" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2576" i_stop="2447" i_length="130">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2446" g_stop="2114" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="394" r_length="333" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="395" polyA_stop="407"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E215736" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>394</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215736" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2637" e_stop="2577"/>
          <exon e_start="2446" e_stop="2114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAGGTAACCTGAACACAATCATTTCGCATACTTATACAACCAACCTGAATACTCATTTACATTAAAAAAACACACATGCATAAGCACACATATACCGTTGATTCACTTGTGATCATACTTGGTAAAATTGCAGCCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACAGTTTGGATATCATGTGTACAGTCATATAGACTGGTTTCACCATTAACCAGGATGCATTTCAACAATGAATTCTGTTTTACATTTCAAG</genome_strand>
        <mrna_strand>TGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAG..................................................................................................................................CCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACAGTTTGGATATCATGTGTACAGTCATATAGACTGGTTTCACCATTAACCAGGATGCATTTCAACAATGAATTCTGTTTTACATTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E223864" ref_strand="-" ref_description="SGN-E223864 [cLEL-19-B15]">
      <seq>cgacatggtcaaaattgtcgcttggtatgacaacgagtggggattcagccaacgtgtggtcgacttagctcatctggtagcagacaaatggcccggttcagctgcagaagggagcggaaacgccttagaggactactgcaagacaaaccctgcagacaaggaatgcaaagtctacgaataatctctctgctttcttttcctttttttgaaattccgcatggatgatttttgaagctaaattgtttcccttgttcaaaaatttataaatgaacgaacgacagtaaaatcacacagtttggatatcatgtgtacagtcatatagactggtttcaccattaaccaggatgcatttcaacaatgaattctgttttacatttcaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="2924" stop="1813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2624" g_stop="2577" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2576" i_stop="2447" i_length="130">
            <donor d_prob="0.877" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2446" g_stop="2114" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="381" r_length="333" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="382" polyA_stop="406"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E223864" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223864" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2624" e_stop="2577"/>
          <exon e_start="2446" e_stop="2114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAGGTAACCTGAACACAATCATTTCGCATACTTATACAACCAACCTGAATACTCATTTACATTAAAAAAACACACATGCATAAGCACACATATACCGTTGATTCACTTGTGATCATACTTGGTAAAATTGCAGCCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACAGTTTGGATATCATGTGTACAGTCATATAGACTGGTTTCACCATTAACCAGGATGCATTTCAACAATGAATTCTGTTTTACATTTCAAG</genome_strand>
        <mrna_strand>CGACATGGTCAAAATTGTCGCTTGGTATGACAACGAGTGGGGATTCAG..................................................................................................................................CCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAAACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACAGTTTGGATATCATGTGTACAGTCATATAGACTGGTTTCACCATTAACCAGGATGCATTTCAACAATGAATTCTGTTTTACATTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E223763" ref_strand="-" ref_description="SGN-E223763 [cLEL-19-B15]">
      <seq>gtcgacttagctcatctggtagcagacaaatggcccggttcagctgcagaagggagcggagacgccttagaggactactgcaagacaaaaccctgcagacaaggaatgcaaagtctacgaataatctctctgctttcttttcctttttttgaaattccgcatggatgatttttgaagctaaattgtttcccttgttcaaaaatttataaatgaacgaacgacagtaaaatcacacagtttggatatcatgtgtacagtcatatagactggtttcaccattaaccaggatgcatttcaacaatgaattctgttttacatttcaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="2736" stop="1813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2436" g_stop="2114" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="325" polyA_stop="349"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E223763" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223763" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2436" e_stop="2114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGAC-AAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACAGTTTGGATATCATGTGTACAGTCATATAGACTGGTTTCACCATTAACCAGGATGCATTTCAACAATGAATTCTGTTTTACATTTCAAG</genome_strand>
        <mrna_strand>GTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACAGTTTGGATATCATGTGTACAGTCATATAGACTGGTTTCACCATTAACCAGGATGCATTTCAACAATGAATTCTGTTTTACATTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E215921" ref_strand="-" ref_description="SGN-E215921 [cLEL-15-N10]">
      <seq>ggcaccaggcaaagtctacgaataatctctctgctttcttttcctttttttgaaattccgcatggatgatttttgaagctaaattgtttcccttgttcaaaaatttataaatgaacgaacgacagtaaaatcacacagtttggatatcatgtgtacagtcatatagactggtttcaccattaaccaggatgcatttcaacaatgaattctgttttacatttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="2632" stop="1813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2340" g_stop="2114" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="226" polyA_stop="239"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E215921" ref_strand="-">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>227</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215921" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2340" e_stop="2114"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACAGTTTGGATATCATGTGTACAGTCATATAGACTGGTTTCACCATTAACCAGGATGCATTTCAACAATGAATTCTGTTTTACATTTCAAG</genome_strand>
        <mrna_strand>GGC-A-CCAGGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACAGTTTGGATATCATGTGTACAGTCATATAGACTGGTTTCACCATTAACCAGGATGCATTTCAACAATGAATTCTGTTTTACATTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E732407" ref_strand="+" ref_description="SGN-E732407 [LB02AD03]">
      <seq>cacctaatgtttcggttgttgaccttgttataaatgttgaaaagaaaggaatttcagctgaagatgtcaatgcagctttcagaaaggcagctgacggtccgttgaatggcatattggctgtttgtgatgagcctcttgtgtcagttgacttccgatgcagtgatgtttccaccaccatcgactcctctttaaccatggttatgggagacgacatggtcaagattgtcgcttggtatgacaacgagtggggatacagccaacgtgtggtcgacttagctcatctggtagcagacaaatggcccggttcagctgcagaagggagcggagacgccttagaggactactgcaagacaaaccctgcagacaaggaatgcaaagtctacgaataatctctctgctttcttttcctttttttgaaattccgcatggatgatttttgaagctaaattgtttcccttgttcaaaaatttataaatgaacgaacgacagtaaaatcacacagtttggatatcatgtgtacagtcatatagactggtttcaccattaaccaggatgcatttcaacaatgaattctgttttacattaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="3132" stop="1813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2832" g_stop="2577" g_length="256"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="256" r_length="256" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2576" i_stop="2447" i_length="130">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2446" g_stop="2122" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="581" r_length="325" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="585" polyA_stop="599"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E732407" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2832" e_stop="2577"/>
          <exon e_start="2446" e_stop="2122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCTAATGTTTCGGTTGTTGACCTTGTTATAAATGTTGAAAAGAAAGGAATTTCAGCTGAAGATGTCAATGCAGCTTTCAGAAAGGCAGCTGACGGTCCGTTGAATGGCATATTGGCTGTTTGTGATGAGCCTCTTGTGTCAGTTGACTTCCGATGCAGTGATGTTTCCACCACCATCGACTCCTCTTTAACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAGGTAACCTGAACACAATCATTTCGCATACTTATACAACCAACCTGAATACTCATTTACATTAAAAAAACACACATGCATAAGCACACATATACCGTTGATTCACTTGTGATCATACTTGGTAAAATTGCAGCCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACAGTTTGGATATCATGTGTACAGTCATATAGACTGGTTTCACCATTAACCAGGATGCATTTCAACAATGAATTCTGTTTTAC</genome_strand>
        <mrna_strand>CACCTAATGTTTCGGTTGTTGACCTTGTTATAAATGTTGAAAAGAAAGGAATTTCAGCTGAAGATGTCAATGCAGCTTTCAGAAAGGCAGCTGACGGTCCGTTGAATGGCATATTGGCTGTTTGTGATGAGCCTCTTGTGTCAGTTGACTTCCGATGCAGTGATGTTTCCACCACCATCGACTCCTCTTTAACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAG..................................................................................................................................CCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACAGTTTGGATATCATGTGTACAGTCATATAGACTGGTTTCACCATTAACCAGGATGCATTTCAACAATGAATTCTGTTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E227504" ref_strand="-" ref_description="SGN-E227504 [cLEL-30-N20]">
      <seq>agtgatgtttccaccaccatcgactcctctttaaccatggttatgggagacgacatggtcaagattgtcgcttggtatgacaacgagtggggatacagccaacgtgtggtcgacttagctcatctggtagcagacaaatggcccggttcagctgcagaagggagcggagacgccttagaggactactgcaagacaaaccctgcagacaaggaatgcaaagtctacgaataatctctctgctttcttttcctttttttgaaattccgcatggatgatttttgaagctaaattgtttcccttgttcaaaaatttataaatgaacgaacgacagtaaaatcacacagtttggatatcatgtgtacagtcatatagactggtttcaccattaaccaggatgcatttcaacaatgaattctgttttacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="2974" stop="1821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2674" g_stop="2577" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2576" i_stop="2447" i_length="130">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2446" g_stop="2122" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="423" r_length="325" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="424" polyA_stop="440"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E227504" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227504" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2674" e_stop="2577"/>
          <exon e_start="2446" e_stop="2122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGATGTTTCCACCACCATCGACTCCTCTTTAACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAGGTAACCTGAACACAATCATTTCGCATACTTATACAACCAACCTGAATACTCATTTACATTAAAAAAACACACATGCATAAGCACACATATACCGTTGATTCACTTGTGATCATACTTGGTAAAATTGCAGCCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACAGTTTGGATATCATGTGTACAGTCATATAGACTGGTTTCACCATTAACCAGGATGCATTTCAACAATGAATTCTGTTTTAC</genome_strand>
        <mrna_strand>AGTGATGTTTCCACCACCATCGACTCCTCTTTAACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAG..................................................................................................................................CCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACAGTTTGGATATCATGTGTACAGTCATATAGACTGGTTTCACCATTAACCAGGATGCATTTCAACAATGAATTCTGTTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E227716" ref_strand="-" ref_description="SGN-E227716 [cLEL-30-N22]">
      <seq>gccaacgtgtggtcgacttagctcatctggtagcagacaaatggcccggttcagctgcagaagggagcggagacgccttagaggactactgcaagacaaaccctgcagacaaggaatgcaaagtctacgaataatctctctgctttcttttcctttttttgaaattccgcatggatgatttttgaagctaaattgtttcccttgttcaaaaatttataaatgaacgaacgacagtaaaatcacacagtttggatatcatgtgtacagtcatatagactggtttcaccattaaccaggatgcatttcaacaatgaattctgttttacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="2747" stop="1821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2447" g_stop="2122" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="327" polyA_stop="343"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E227716" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E227716" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2447" e_stop="2122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACAGTTTGGATATCATGTGTACAGTCATATAGACTGGTTTCACCATTAACCAGGATGCATTTCAACAATGAATTCTGTTTTAC</genome_strand>
        <mrna_strand>GCCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACAGTTTGGATATCATGTGTACAGTCATATAGACTGGTTTCACCATTAACCAGGATGCATTTCAACAATGAATTCTGTTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E398626" ref_strand="+" ref_description="SGN-E398626 [TUS-43-P4]">
      <seq>ttttttttttcattgttgacatgcatcctggttaatggtgaaaccagtctatatgaccgcccacatgatatccaaactgtgtgattttactgtcgttcgttcatttataaatttttgaacaagggaaacaatttaccttcaaaaatcatccatgcggaatttcaaaaaaaggaaaagaaagcaaaaagattattcgtaaactttgcattccttgtctgcagggtttgtcttgcagtaatcctctaaggcgtctccgctcccttctgcagctgaaccgggccatttgtctgctaccaaatgaactaaatccaccacacgttggctgtatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="1833" stop="2751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2133" g_stop="2455" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="331" r_length="323" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E398626" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E398626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2133" e_stop="2455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGTTGAAATGCATCCTGGTTAATGGTGAAACCAGTCTATATGACTGTACACATGATATCCAAACTGTGTGATTTTACTGTCGTTCGTTCATTTATAAATTTTTGAACAAGGGAAACAATTTAGCTTCAAAAATCATCCATGCGGAATTTCAAAAAAAGGAAAAGAAAGCAGAGAGATTATTCGTAGACTTTGCATTCCTTGTCTGCAGGGTTTGTCTTGCAGTAGTCCTCTAAGGCGTCTCCGCTCCCTTCTGCAGCTGAACCGGGCCATTTGTCTGCTACCAGATGAGCTAAGTCGACCACACGTTGGCTGCAATTT</genome_strand>
        <mrna_strand>TTCATTGTTGACATGCATCCTGGTTAATGGTGAAACCAGTCTATATGACCGCCCACATGATATCCAAACTGTGTGATTTTACTGTCGTTCGTTCATTTATAAATTTTTGAACAAGGGAAACAATTTACCTTCAAAAATCATCCATGCGGAATTTCAAAAAAAGGAAAAGAAAGCAAAAAGATTATTCGTAAACTTTGCATTCCTTGTCTGCAGGGTTTGTCTTGCAGTAATCCTCTAAGGCGTCTCCGCTCCCTTCTGCAGCTGAACCGGGCCATTTGTCTGCTACCAAATGAACTAAATCCACCACACGTTGGCTGTATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E396748" ref_strand="+" ref_description="SGN-E396748 [TUS-43-P3]">
      <seq>ttttttttttcattgttgatttgcatcctggttaatggtgaaaccagtctatatgactgctttcatgatatccaaactgtgtgattttactgtcgttcgttcatttataaatttttgaacaagggaaacaatttagcttcaaaaatcatccatgcggaatttcaaaaaaaggaaaagaaagcaaagagattattcgtagactttgcattccttgtctgcagggtttgtcttgcagaagtcctctaaggcgtctccgctcccttctgcagctgaaccgggccatttgtctgctaccaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="1833" stop="2722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2133" g_stop="2422" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="298" r_length="290" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E396748" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>290</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E396748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2133" e_stop="2422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTGTTGAAATGCATCCTGGTTAATGGTGAAACCAGTCTATATGACTGTACACATGATATCCAAACTGTGTGATTTTACTGTCGTTCGTTCATTTATAAATTTTTGAACAAGGGAAACAATTTAGCTTCAAAAATCATCCATGCGGAATTTCAAAAAAAGGAAAAGAAAGCAGAGAGATTATTCGTAGACTTTGCATTCCTTGTCTGCAGGGTTTGTCTTGCAGTAGTCCTCTAAGGCGTCTCCGCTCCCTTCTGCAGCTGAACCGGGCCATTTGTCTGCTACCAGA</genome_strand>
        <mrna_strand>TTCATTGTTGATTTGCATCCTGGTTAATGGTGAAACCAGTCTATATGACTGCTTTCATGATATCCAAACTGTGTGATTTTACTGTCGTTCGTTCATTTATAAATTTTTGAACAAGGGAAACAATTTAGCTTCAAAAATCATCCATGCGGAATTTCAAAAAAAGGAAAAGAAAGCAAAGAGATTATTCGTAGACTTTGCATTCCTTGTCTGCAGGGTTTGTCTTGCAGAAGTCCTCTAAGGCGTCTCCGCTCCCTTCTGCAGCTGAACCGGGCCATTTGTCTGCTACCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E397008" ref_strand="-" ref_description="SGN-E397008 [TUS-44-P3]">
      <seq>gcagcattgaacattgtcccgaccagcactggtgcagcaaaggctgtgtctctagtgctacctcagctcaagggaaagcttaatggaattgctctccgagtgccaacacctaatgtttcggttgttgaccttgttataaatgttgaaaagaaaggaatttcagctgaagatgtcaatgcagctttcagaaaggcagctgacggtccgttgaatggcatattggctgtttgtgatgagcctcttgtgtcagttgacttccgatgcagtgatgtttccaccaccatcgactcctctttaaccatggttatgggagacgacatggtcaagattgtcgcttggtatgacaacgagtggggatacagccaacgtgtggtcgacttagctcatttggtagcagacaaatggcccggttcagctgcagaagggagcggagacgccttagaggactactgcaagacaaaccctgcagacaaggaatgcaaagtttacgaataatctctttgctttcttttcctttttttgaaattccgcatggatgatttttgaagctaaattgtttcccttgttcaaaaatttataaatgaacgaacgacagtaaaatcacacagtttggatatcatgtgtacagtcatatagactggtttcaccattaaccaggatgcatttcaacaatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="3238" stop="1833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2938" g_stop="2577" g_length="362"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="362" r_length="362" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2576" i_stop="2447" i_length="130">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2446" g_stop="2134" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="675" r_length="313" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E397008" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397008" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2938" e_stop="2577"/>
          <exon e_start="2446" e_stop="2134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCATTGAACATTGTCCCGACCAGCACTGGTGCAGCAAAGGCTGTGTCTCTAGTGCTACCTCAGCTCAAGGGAAAGCTTAATGGAATTGCTCTCCGAGTGCCAACACCTAATGTTTCGGTTGTTGACCTTGTTATAAATGTTGAAAAGAAAGGAATTTCAGCTGAAGATGTCAATGCAGCTTTCAGAAAGGCAGCTGACGGTCCGTTGAATGGCATATTGGCTGTTTGTGATGAGCCTCTTGTGTCAGTTGACTTCCGATGCAGTGATGTTTCCACCACCATCGACTCCTCTTTAACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAGGTAACCTGAACACAATCATTTCGCATACTTATACAACCAACCTGAATACTCATTTACATTAAAAAAACACACATGCATAAGCACACATATACCGTTGATTCACTTGTGATCATACTTGGTAAAATTGCAGCCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACAGTTTGGATATCATGTGTACAGTCATATAGACTGGTTTCACCATTAACCAGGATGCATTTCAACAATGA</genome_strand>
        <mrna_strand>GCAGCATTGAACATTGTCCCGACCAGCACTGGTGCAGCAAAGGCTGTGTCTCTAGTGCTACCTCAGCTCAAGGGAAAGCTTAATGGAATTGCTCTCCGAGTGCCAACACCTAATGTTTCGGTTGTTGACCTTGTTATAAATGTTGAAAAGAAAGGAATTTCAGCTGAAGATGTCAATGCAGCTTTCAGAAAGGCAGCTGACGGTCCGTTGAATGGCATATTGGCTGTTTGTGATGAGCCTCTTGTGTCAGTTGACTTCCGATGCAGTGATGTTTCCACCACCATCGACTCCTCTTTAACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAG..................................................................................................................................CCAACGTGTGGTCGACTTAGCTCATTTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTTTACGAATAATCTCTTTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACAGTTTGGATATCATGTGTACAGTCATATAGACTGGTTTCACCATTAACCAGGATGCATTTCAACAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E395323" ref_strand="-" ref_description="SGN-E395323 [TUS-43-O3]">
      <seq>cgaccagcactggtgcagcaaaggctgtgtctttagtgctacctcagctcaagggaaagcttaatggaattgctctccgagtgccaacacctaatgtttcggttgttgaccttgttataaatgttgaaaagaaaggaatttcagctgaagatgtcaatgcagctttcagaaaggcagctgacggtccgttgaatggcatattggctgtttgtgatgagcctcttgtgtcagttgacttccgatgcagtgatgtttccaccaccatcgactcctctttaaccatggttatgggagacgacatggtcaagattgtcgcttggtatgacaacgagtggggatacagccaacgtgtggtcgacttagctcatttggtagcagacaaatggcccggttcagctgcagaagggagcggagacgccttagaggactactgcaagacaaaccctgcagacaaggaatgcaaagtttacgaataatctctttgctttcttttcctttttttgaaattccgcatggatgatttttgaagctaaattgtttcccttgttcaaaaatttataaatgaacgaacgacagtaaaatcacacagtttggatatcatgtgtacagtcatatagactggtttcaccattaaccaggatgcatttcaacaatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="3219" stop="1833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2919" g_stop="2577" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="343" r_length="343" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2576" i_stop="2447" i_length="130">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2446" g_stop="2134" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="656" r_length="313" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E395323" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395323" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2919" e_stop="2577"/>
          <exon e_start="2446" e_stop="2134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACCAGCACTGGTGCAGCAAAGGCTGTGTCTCTAGTGCTACCTCAGCTCAAGGGAAAGCTTAATGGAATTGCTCTCCGAGTGCCAACACCTAATGTTTCGGTTGTTGACCTTGTTATAAATGTTGAAAAGAAAGGAATTTCAGCTGAAGATGTCAATGCAGCTTTCAGAAAGGCAGCTGACGGTCCGTTGAATGGCATATTGGCTGTTTGTGATGAGCCTCTTGTGTCAGTTGACTTCCGATGCAGTGATGTTTCCACCACCATCGACTCCTCTTTAACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAGGTAACCTGAACACAATCATTTCGCATACTTATACAACCAACCTGAATACTCATTTACATTAAAAAAACACACATGCATAAGCACACATATACCGTTGATTCACTTGTGATCATACTTGGTAAAATTGCAGCCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACAGTTTGGATATCATGTGTACAGTCATATAGACTGGTTTCACCATTAACCAGGATGCATTTCAACAATGA</genome_strand>
        <mrna_strand>CGACCAGCACTGGTGCAGCAAAGGCTGTGTCTTTAGTGCTACCTCAGCTCAAGGGAAAGCTTAATGGAATTGCTCTCCGAGTGCCAACACCTAATGTTTCGGTTGTTGACCTTGTTATAAATGTTGAAAAGAAAGGAATTTCAGCTGAAGATGTCAATGCAGCTTTCAGAAAGGCAGCTGACGGTCCGTTGAATGGCATATTGGCTGTTTGTGATGAGCCTCTTGTGTCAGTTGACTTCCGATGCAGTGATGTTTCCACCACCATCGACTCCTCTTTAACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAG..................................................................................................................................CCAACGTGTGGTCGACTTAGCTCATTTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTTTACGAATAATCTCTTTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACAGTTTGGATATCATGTGTACAGTCATATAGACTGGTTTCACCATTAACCAGGATGCATTTCAACAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E397203" ref_strand="-" ref_description="SGN-E397203 [TUS-44-P4]">
      <seq>agcaaaggctgtgtctctagtgctacttcagctcaagggaaagcttaatggaattgctctccgagtgccaacacctaatgtttcggttgttgaccttgttataaatgttgaaaagaaaggaatttcagctgaagatgtcaatgcagctttcagaaaggcagctgacggtccgttgaatggcatattggctgtttgtgatgagcctcttgtgtcagttgacttccgatgcagtgatgtttccaccaccatcgactcctctttaaccatggttatgggagacgacatggtcaagattgtcgcttggtatgacaacgagtggggatacagccaacgtgtggtcgacttagctcatttggtagcagacaaatggcccggttcagctgcagaagggagcggagacgccttagaggactactgcaagacaaaccctgcagacaaggaatgcaaagtttacgaataatctctttgctttcttttcctttttttgaaattccgcatggatgatttttgaagctaaattgtttcccttgttcaaaaatttataaatgaacgaacgacagtaaaatcacacagtttggatatcatgtgtacagtcatatagactggtttcaccattaaccaggatgcatttcaacaatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="3203" stop="1833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2903" g_stop="2577" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2576" i_stop="2447" i_length="130">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2446" g_stop="2134" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="328" r_stop="640" r_length="313" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E397203" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397203" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2903" e_stop="2577"/>
          <exon e_start="2446" e_stop="2134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCAAAGGCTGTGTCTCTAGTGCTACCTCAGCTCAAGGGAAAGCTTAATGGAATTGCTCTCCGAGTGCCAACACCTAATGTTTCGGTTGTTGACCTTGTTATAAATGTTGAAAAGAAAGGAATTTCAGCTGAAGATGTCAATGCAGCTTTCAGAAAGGCAGCTGACGGTCCGTTGAATGGCATATTGGCTGTTTGTGATGAGCCTCTTGTGTCAGTTGACTTCCGATGCAGTGATGTTTCCACCACCATCGACTCCTCTTTAACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAGGTAACCTGAACACAATCATTTCGCATACTTATACAACCAACCTGAATACTCATTTACATTAAAAAAACACACATGCATAAGCACACATATACCGTTGATTCACTTGTGATCATACTTGGTAAAATTGCAGCCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACAGTTTGGATATCATGTGTACAGTCATATAGACTGGTTTCACCATTAACCAGGATGCATTTCAACAATGA</genome_strand>
        <mrna_strand>AGCAAAGGCTGTGTCTCTAGTGCTACTTCAGCTCAAGGGAAAGCTTAATGGAATTGCTCTCCGAGTGCCAACACCTAATGTTTCGGTTGTTGACCTTGTTATAAATGTTGAAAAGAAAGGAATTTCAGCTGAAGATGTCAATGCAGCTTTCAGAAAGGCAGCTGACGGTCCGTTGAATGGCATATTGGCTGTTTGTGATGAGCCTCTTGTGTCAGTTGACTTCCGATGCAGTGATGTTTCCACCACCATCGACTCCTCTTTAACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAG..................................................................................................................................CCAACGTGTGGTCGACTTAGCTCATTTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTTTACGAATAATCTCTTTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACAGTTTGGATATCATGTGTACAGTCATATAGACTGGTTTCACCATTAACCAGGATGCATTTCAACAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E396583" ref_strand="-" ref_description="SGN-E396583 [TUS-43-O4]">
      <seq>ttcctctttagccatggttatgggagaagacatggtaaaaaaaattgcttggtatgacaacgagtggggatacagccaacgtgtggtcgacttagctcatctggtagcagacaaatggcccggttcagctgcagaagggagcggagacgccttagaggactactgcaagacaaaccctgcagacaaggaatgcaaagtctacgaataatctctttgctttcttttcctttttttgaaattccgcatggatgatttttgaagctaaattgtttcccttgttcaaaaatttataaatgaacgaacgacagtaaaatcacacagtttggatatcatgtatacagtcatatagactggtttcaccattaaccaggatgcaattcaacaatgaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="2950" stop="1833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2651" g_stop="2577" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.880"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2576" i_stop="2447" i_length="130">
            <donor d_prob="0.877" d_score="0.86"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2446" g_stop="2134" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="388" r_length="313" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E396583" ref_strand="-">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>388</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396583" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2651" e_stop="2577"/>
          <exon e_start="2446" e_stop="2134"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCTTTAACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAGGTAACCTGAACACAATCATTTCGCATACTTATACAACCAACCTGAATACTCATTTACATTAAAAAAACACACATGCATAAGCACACATATACCGTTGATTCACTTGTGATCATACTTGGTAAAATTGCAGCCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACAGTTTGGATATCATGTGTACAGTCATATAGACTGGTTTCACCATTAACCAGGATGCATTTCAACAATGA</genome_strand>
        <mrna_strand>TTCCTCTTTAGCCATGGTTATGGGAGAAGACATGGTAAAAAAAATTGCTTGGTATGACAACGAGTGGGGATACAG..................................................................................................................................CCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTTTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACAGTTTGGATATCATGTATACAGTCATATAGACTGGTTTCACCATTAACCAGGATGCAATTCAACAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E228725" ref_strand="-" ref_description="SGN-E228725 [cLEL-29-P12]">
      <seq>aaccatggttatgggagacgacatggtcaagattgtcgcttggtatgacaacgagtggggatacagccaacgtgtggtcgacttagctcatctggtagcagacaaatggcccggttcagctgcaaaagggagcggagacgccttagaggactactgcaagacaaaccctgcagacaaggaatgcaaagtctacgaataatctctctgctttcttttcctttttttgaaattccgcatggatgatttttgaagctaaattgtttcccttgttcaaaaatttataaatgaacgaacgacagtaaaatcacccagtttggatatcatgtgtacagtcatatagactggtttcaccattaaccaggatgcatttcaacaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="2942" stop="1833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2642" g_stop="2577" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2576" i_stop="2447" i_length="130">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2446" g_stop="2138" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="375" r_length="309" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="376" polyA_stop="402"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E228725" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228725" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2642" e_stop="2577"/>
          <exon e_start="2446" e_stop="2138"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAGGTAACCTGAACACAATCATTTCGCATACTTATACAACCAACCTGAATACTCATTTACATTAAAAAAACACACATGCATAAGCACACATATACCGTTGATTCACTTGTGATCATACTTGGTAAAATTGCAGCCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACAGTTTGGATATCATGTGTACAGTCATATAGACTGGTTTCACCATTAACCAGGATGCATTTCAACA</genome_strand>
        <mrna_strand>AACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAG..................................................................................................................................CCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAAAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACCCAGTTTGGATATCATGTGTACAGTCATATAGACTGGTTTCACCATTAACCAGGATGCATTTCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E229205" ref_strand="-" ref_description="SGN-E229205 [cLEL-29-P12]">
      <seq>tgtttccaccaccatcgactcctctttaaccatggttatgggagacgacatggtcaagattgtcgcttggtatgacaacgagtggggatacagccaacgtgtggtcgacttagctcatctggtagcagacaaatggcccggttcagctgcagaagggagcggagacgccttagaggactactgcaagacaaaccctgcagacaaggaatgcaaagtctacgaataatctctctgctttcttttcctttttttgaaattccgcatggatgatttttgaagctaaattgtttcccttgttcaaaaatttataaatgaacgaacgacagtaaaatcacacagtttggatatcatgtgtacagtcatatagactggtttcaccattaaccaggatgcatttcatcaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="2969" stop="1833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2669" g_stop="2577" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2576" i_stop="2447" i_length="130">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2446" g_stop="2149" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="391" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="402" polyA_stop="429"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E229205" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="0.911" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229205" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2669" e_stop="2577"/>
          <exon e_start="2446" e_stop="2149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTCCACCACCATCGACTCCTCTTTAACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAGGTAACCTGAACACAATCATTTCGCATACTTATACAACCAACCTGAATACTCATTTACATTAAAAAAACACACATGCATAAGCACACATATACCGTTGATTCACTTGTGATCATACTTGGTAAAATTGCAGCCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACAGTTTGGATATCATGTGTACAGTCATATAGACTGGTTTCACCATTAACCAGGAT</genome_strand>
        <mrna_strand>TGTTTCCACCACCATCGACTCCTCTTTAACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAG..................................................................................................................................CCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACAGTTTGGATATCATGTGTACAGTCATATAGACTGGTTTCACCATTAACCAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E278483" ref_strand="+" ref_description="SGN-E278483 [cLEL-2-E12]">
      <seq>gcacgacatggtcaagattgtcgcttggtatgacaacgagtggggatacagccaacgtgtggtcgacttagctcatctggtagcagacaaatggcccggttcagctgcagaagggagcggagacgccttagaggactactgcaagacaaaccctgcagacaaggaatgcaaagtctacgaataatctctctgctttcttttcctttttttgaaattccgcatggatgatttttgaagctaaattgtttcccttgttcaaaaatttataaatgaacgaacgacagtaaaatcacacagtttggatatcatgtgtacagtcatatagacttggtttcaccattannaaaaaanaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="2925" stop="1857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2627" g_stop="2577" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2576" i_stop="2447" i_length="130">
            <donor d_prob="0.877" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2446" g_stop="2149" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="350" r_length="299" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="352" polyA_stop="363"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E278483" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2627" e_stop="2577"/>
          <exon e_start="2446" e_stop="2149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAGGTAACCTGAACACAATCATTTCGCATACTTATACAACCAACCTGAATACTCATTTACATTAAAAAAACACACATGCATAAGCACACATATACCGTTGATTCACTTGTGATCATACTTGGTAAAATTGCAGCCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACAGTTTGGATATCATGTGTACAGTCATATAGAC-TGGTTTCACCATTAACCAGGAT</genome_strand>
        <mrna_strand>GCACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAG..................................................................................................................................CCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACAGTTTGGATATCATGTGTACAGTCATATAGACTTGGTTTCACCATTANNAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E224686" ref_strand="-" ref_description="SGN-E224686 [cLEL-27-I5]">
      <seq>taatgtttcggttgttgaccttgttataaatgttgaaaagaaaggaatttcagctgaagatgtcaatgcagctttcagaaaggcagctgacggtccgttgaatggcatattggctgtttgtgatgagcctcttgtgtcagttgacttccgatgcagtgatgtttccaccaccatcgactcctctttaaccatggttatgggagacgacatggtcaagattgtcgcttggtatgacaacgagtggggatacagccaacgtgtggtcgacttagctcatctggtagcagacaaatggcccggttcagctgcagaagggagcggagacgccttagaggactactgcaagacaaaccctgcagacaaggaatgcaaagtctacgaataatctctctgctttcttttcctttttttgaaattccgcatggatgatttttgaagctaaattgtttcccttgttcaaaaatttataaatgaacgaacgncagtaaaatcacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="3128" stop="1902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2828" g_stop="2577" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2576" i_stop="2447" i_length="130">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2446" g_stop="2202" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="253" r_stop="497" r_length="245" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="498" polyA_stop="511"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E224686" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224686" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2828" e_stop="2577"/>
          <exon e_start="2446" e_stop="2202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGTTTCGGTTGTTGACCTTGTTATAAATGTTGAAAAGAAAGGAATTTCAGCTGAAGATGTCAATGCAGCTTTCAGAAAGGCAGCTGACGGTCCGTTGAATGGCATATTGGCTGTTTGTGATGAGCCTCTTGTGTCAGTTGACTTCCGATGCAGTGATGTTTCCACCACCATCGACTCCTCTTTAACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAGGTAACCTGAACACAATCATTTCGCATACTTATACAACCAACCTGAATACTCATTTACATTAAAAAAACACACATGCATAAGCACACATATACCGTTGATTCACTTGTGATCATACTTGGTAAAATTGCAGCCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACA</genome_strand>
        <mrna_strand>TAATGTTTCGGTTGTTGACCTTGTTATAAATGTTGAAAAGAAAGGAATTTCAGCTGAAGATGTCAATGCAGCTTTCAGAAAGGCAGCTGACGGTCCGTTGAATGGCATATTGGCTGTTTGTGATGAGCCTCTTGTGTCAGTTGACTTCCGATGCAGTGATGTTTCCACCACCATCGACTCCTCTTTAACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAG..................................................................................................................................CCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGNCAGTAAAATCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E224610" ref_strand="-" ref_description="SGN-E224610 [cLEL-27-I5]">
      <seq>tttgtgatgagcctcttgtgtcagttgacttccgatgcagtgatgtttccaccaccatcgactcctctttaaccatggttatgggaaacgacatggtcaagattgtcgcttggtatgacaacgagtggggatacagccaacgtgtggtcgacttagctcatctggtagcagacaaatggcccggttcagctgcagaagggagcggagacgccttagaggactactgcaagacaaaccctgcagacaaggaatgcaaagtctacgaataatctctctgctttcttttcctttttttgaaattccgcatggatgatttttgaagctaaattgtttcccttgttcgaaaatttataaatgaacgatcgacagtaccatcgcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="3012" stop="1902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2712" g_stop="2577" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2576" i_stop="2447" i_length="130">
            <donor d_prob="0.877" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2446" g_stop="2202" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="381" r_length="245" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="382" polyA_stop="395"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E224610" ref_strand="-">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224610" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2712" e_stop="2577"/>
          <exon e_start="2446" e_stop="2202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGATGAGCCTCTTGTGTCAGTTGACTTCCGATGCAGTGATGTTTCCACCACCATCGACTCCTCTTTAACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAGGTAACCTGAACACAATCATTTCGCATACTTATACAACCAACCTGAATACTCATTTACATTAAAAAAACACACATGCATAAGCACACATATACCGTTGATTCACTTGTGATCATACTTGGTAAAATTGCAGCCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACA</genome_strand>
        <mrna_strand>TTTGTGATGAGCCTCTTGTGTCAGTTGACTTCCGATGCAGTGATGTTTCCACCACCATCGACTCCTCTTTAACCATGGTTATGGGAAACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAG..................................................................................................................................CCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCGAAAATTTATAAATGAACGATCGACAGTACCATCGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E217411" ref_strand="-" ref_description="SGN-E217411 [cLEL-21-J7]">
      <seq>ttcacttccgatgcagtgatgtttccaccaccatcgactcctctttaaccatggttatgggagacgacatggtcaagattgtcgcttggtatgacaacgagtggggatacagccaacgtgtggtcgacttagctcatctggtagcagacaaatggcccggttcagctgcagaagggagcggagacgccttagaggactactgcaagacaaaccctgcagacaaggaatgcaaagtctacgaataatctctatgctttcttttcctttttttggaattccgcatgggttatttgtaaagttaaattgtttcccttgttcgataatttataaatgaacgaccgtcagtanaatcnaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="2988" stop="1902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2688" g_stop="2577" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2576" i_stop="2447" i_length="130">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2446" g_stop="2202" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="357" r_length="245" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="358" polyA_stop="370"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E217411" ref_strand="-">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>357</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217411" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2688" e_stop="2577"/>
          <exon e_start="2446" e_stop="2202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGACTTCCGATGCAGTGATGTTTCCACCACCATCGACTCCTCTTTAACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAGGTAACCTGAACACAATCATTTCGCATACTTATACAACCAACCTGAATACTCATTTACATTAAAAAAACACACATGCATAAGCACACATATACCGTTGATTCACTTGTGATCATACTTGGTAAAATTGCAGCCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACA</genome_strand>
        <mrna_strand>TTCACTTCCGATGCAGTGATGTTTCCACCACCATCGACTCCTCTTTAACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAG..................................................................................................................................CCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTATGCTTTCTTTTCCTTTTTTTGGAATTCCGCATGGGTTATTTGTAAAGTTAAATTGTTTCCCTTGTTCGATAATTTATAAATGAACGACCGTCAGTANAATCNAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E229189" ref_strand="-" ref_description="SGN-E229189 [cLEL-29-N1]">
      <seq>agtgatgtttccaccaccatcgactcctctttaaccatggttatgggagacgacatggtcaagattgtcgcttggtatgacaacgagtggggatacagccaacgtgtggtcgacttagctcatctggtagcagacaaatggcccggttcagctgcagaagggagcggagacgccttagaggactactgcaagacaaaccctgcagacaaggaatgcaaagtctacgaataatctctctgctttcttttcctttttttgaaattccgcatggatgatttttgaagctaaattgtttcccttgttcaaaaatttataaatgaacgaacgacagtaaaatcacaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="2974" stop="1902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2674" g_stop="2577" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2576" i_stop="2447" i_length="130">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2446" g_stop="2202" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="343" r_length="245" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="344" polyA_stop="357"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E229189" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E229189" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2674" e_stop="2577"/>
          <exon e_start="2446" e_stop="2202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGATGTTTCCACCACCATCGACTCCTCTTTAACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAGGTAACCTGAACACAATCATTTCGCATACTTATACAACCAACCTGAATACTCATTTACATTAAAAAAACACACATGCATAAGCACACATATACCGTTGATTCACTTGTGATCATACTTGGTAAAATTGCAGCCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACA</genome_strand>
        <mrna_strand>AGTGATGTTTCCACCACCATCGACTCCTCTTTAACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAG..................................................................................................................................CCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E228709" ref_strand="-" ref_description="SGN-E228709 [cLEL-29-N1]">
      <seq>tttgtgatgagcctcttgtgtcagttgacttccgatgcagtgatgtttccaccaccatcgactcctctttaaccatggttatgggagacgacatggtcaagattgtcgcttggtatgacaacgagtggggatacagccaacgtgtggtcgacttagctcatctggtagcagacaaatggcccggttcagctgcagaagggagcggagacgccttagaggactactgcaagacaaaccctgcagacaaggaatgcaaagtctacgaataatctctctgctttcttttcctttttttgaaattccgcatggatgatttttgaagctaaattgtttcccttgttcaaaaatttataaatgaacgaacgccagtaaaatccccaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="3012" stop="1902"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2712" g_stop="2577" g_length="136"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="136" r_length="136" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2576" i_stop="2447" i_length="130">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2446" g_stop="2207" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="376" r_length="240" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="380" polyA_stop="395"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E228709" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="0.952" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228709" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2712" e_stop="2577"/>
          <exon e_start="2446" e_stop="2207"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTGATGAGCCTCTTGTGTCAGTTGACTTCCGATGCAGTGATGTTTCCACCACCATCGACTCCTCTTTAACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAGGTAACCTGAACACAATCATTTCGCATACTTATACAACCAACCTGAATACTCATTTACATTAAAAAAACACACATGCATAAGCACACATATACCGTTGATTCACTTGTGATCATACTTGGTAAAATTGCAGCCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATC</genome_strand>
        <mrna_strand>TTTGTGATGAGCCTCTTGTGTCAGTTGACTTCCGATGCAGTGATGTTTCCACCACCATCGACTCCTCTTTAACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAG..................................................................................................................................CCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGCCAGTAAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E285373" ref_strand="-" ref_description="SGN-E285373 [cLER-20-N11]">
      <seq>tgtgtctctagtgctacctcagctcaagggaaagcttaatggaattgctctccgagtgccaacacctaatgtttcggttgttgaccttgttataaatgttgaaaagaaaggaatttcagctgaagatgtcaatgcagctttcagaaaggcagctgacggtccgttgaatggcatattggctgtttgtgatgagcctcttgtgtcagttgacttccgatgcagtgatgtttccaccaccatcgactcctctttaaccatggttatgggagacgacatggtcaagattgtcgcttggtatgacaacgagtggggatacagccaacgtgtggtcgacttagctcatctggtagcagacaaatggcccggttcagctgcagaagggagcggagacgccttagaggactactgcaagacaaaccctgcagacaaggaatgcaaagtctacgaataatctctctgctttcttttcctttttttgaaattccgcatggatgatttttgaagctaaattgtttcccttgttcaaaaatttataaatgaacgaacgacagtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="3194" stop="1910"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2894" g_stop="2577" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2576" i_stop="2447" i_length="130">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2446" g_stop="2210" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="555" r_length="237" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E285373" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285373" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2894" e_stop="2577"/>
          <exon e_start="2446" e_stop="2210"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTCTCTAGTGCTACCTCAGCTCAAGGGAAAGCTTAATGGAATTGCTCTCCGAGTGCCAACACCTAATGTTTCGGTTGTTGACCTTGTTATAAATGTTGAAAAGAAAGGAATTTCAGCTGAAGATGTCAATGCAGCTTTCAGAAAGGCAGCTGACGGTCCGTTGAATGGCATATTGGCTGTTTGTGATGAGCCTCTTGTGTCAGTTGACTTCCGATGCAGTGATGTTTCCACCACCATCGACTCCTCTTTAACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAGGTAACCTGAACACAATCATTTCGCATACTTATACAACCAACCTGAATACTCATTTACATTAAAAAAACACACATGCATAAGCACACATATACCGTTGATTCACTTGTGATCATACTTGGTAAAATTGCAGCCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAA</genome_strand>
        <mrna_strand>TGTGTCTCTAGTGCTACCTCAGCTCAAGGGAAAGCTTAATGGAATTGCTCTCCGAGTGCCAACACCTAATGTTTCGGTTGTTGACCTTGTTATAAATGTTGAAAAGAAAGGAATTTCAGCTGAAGATGTCAATGCAGCTTTCAGAAAGGCAGCTGACGGTCCGTTGAATGGCATATTGGCTGTTTGTGATGAGCCTCTTGTGTCAGTTGACTTCCGATGCAGTGATGTTTCCACCACCATCGACTCCTCTTTAACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAG..................................................................................................................................CCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E224826" ref_strand="-" ref_description="SGN-E224826 [cLEL-27-I15]">
      <seq>tttcagctgaagatgtcaatgcagctttcagaaaggcagctgacggtccgttgaatggcatattggctgtttgtgatgagcctcttgtgtcagttgacttccgatgcagtgatgtttcctccaccatcgactcctctttaaccatggttatgggagacgacatggtcaagattgtcgcttggtatgccaacgagtggggatacagccaacgtgtggtcgacttagctcatctggtagcagacaaatggcccggttcagctgcaaaagggagcggatacgccttagaggactactgcaagacaaaccctgcagacaaggaatgcaaagtctacgaataatctctctgctttcttttcctttttttgaaattccgcatggatgatttttgaagaataaaatgtttcccttattcaaacatccataaatagacagacagcagtagagacaaaaaaagagagagagagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="3081" stop="1961"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2781" g_stop="2577" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2576" i_stop="2447" i_length="130">
            <donor d_prob="0.877" d_score="0.98"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2446" g_stop="2229" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="424" r_length="219" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E224826" ref_strand="-">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>423</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224826" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="2781" e_stop="2577"/>
          <exon e_start="2446" e_stop="2229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCAGCTGAAGATGTCAATGCAGCTTTCAGAAAGGCAGCTGACGGTCCGTTGAATGGCATATTGGCTGTTTGTGATGAGCCTCTTGTGTCAGTTGACTTCCGATGCAGTGATGTTTCCACCACCATCGACTCCTCTTTAACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAGGTAACCTGAACACAATCATTTCGCATACTTATACAACCAACCTGAATACTCATTTACATTAAAAAAACACACATGCATAAGCACACATATACCGTTGATTCACTTGTGATCATACTTGGTAAAATTGCAGCCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAG-CTAAATTGTTTCCCTTGTTCAAAAATTTATAA</genome_strand>
        <mrna_strand>TTTCAGCTGAAGATGTCAATGCAGCTTTCAGAAAGGCAGCTGACGGTCCGTTGAATGGCATATTGGCTGTTTGTGATGAGCCTCTTGTGTCAGTTGACTTCCGATGCAGTGATGTTTCCTCCACCATCGACTCCTCTTTAACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGCCAACGAGTGGGGATACAG..................................................................................................................................CCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAAAAGGGAGCGGATACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGAATAAAATGTTTCCCTTATTCAAACATCCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E285262" ref_strand="+" ref_description="SGN-E285262 [cLER-20-P18]">
      <seq>gaatttggtattgttaagggaactatgacaacaactcactcttacaccggagatcagaggcttctggatgcatcacaccgtgacttgaggagagcgagagctgcagcattgaacattgtcccgaccagcactggtgcagcaaaggctgtgtctctagtgctacctcagctcaagggaaagcttaatggaattgctctccgagtgccaacacctaatgtttcggttgttgaccttgttataaatgttgaaaagaaaggaatttcagctgaagatgtcaatgcagctttcagaaaggcagctgacggtccgttgaatggcatattggctgtttgtgatgagcctcttgtgtcagttgacttccgatgcagtgatgtttccaccaccatcgactcctctttaaccatggttatgggagacgacatggtcaagattgtcgcttggtatgacaacgagtggggatacagccaacgtgtggtcgacttagctcatctggtagcagacaaatggcccggttcagctgcagaagggagcggagacgccttagaggactactgcaagacaaaccctgcagacaaggaatgcaaagtctacgaataatctctctgctttcttttcctttttttgaaattccgcatggatgatttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="3427" stop="1964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3311" g_stop="3305" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3304" i_stop="3122" i_length="183">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3121" g_stop="3072" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="57" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3071" i_stop="2984" i_length="88">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="2983" g_stop="2577" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="464" r_length="407" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="2576" i_stop="2447" i_length="130">
            <donor d_prob="0.877" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2446" g_stop="2264" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="465" r_stop="647" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E285262" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>647</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285262" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3311" e_stop="3305"/>
          <exon e_start="3121" e_stop="3072"/>
          <exon e_start="2983" e_stop="2577"/>
          <exon e_start="2446" e_stop="2264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTGGTAAGCAGAAGATTAATACTGTTCAAATTTATGTGGTTTTAAATGTTCGATTATTTATATCATCGGAAACAGACTCTCTACCTTCACAAATTAGGGGTAAGGCTGTGTACGCACCACCTTCCCAGATCTCACTTGTAGGATTACACTGCGTATGTTGTTTGACTATTTTCATTCACTTTGTAGGTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAGGTAATCATGATATACGATACAACAGGGGAATTTGTGAAAACGTGCACCTTACAGTGACGCTGAATGGATTTGATTATGTTGTATGCAGAGGCTTCTGGATGCATCACACCGTGACTTGAGGAGAGCGAGAGCTGCAGCATTGAACATTGTCCCGACCAGCACTGGTGCAGCAAAGGCTGTGTCTCTAGTGCTACCTCAGCTCAAGGGAAAGCTTAATGGAATTGCTCTCCGAGTGCCAACACCTAATGTTTCGGTTGTTGACCTTGTTATAAATGTTGAAAAGAAAGGAATTTCAGCTGAAGATGTCAATGCAGCTTTCAGAAAGGCAGCTGACGGTCCGTTGAATGGCATATTGGCTGTTTGTGATGAGCCTCTTGTGTCAGTTGACTTCCGATGCAGTGATGTTTCCACCACCATCGACTCCTCTTTAACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAGGTAACCTGAACACAATCATTTCGCATACTTATACAACCAACCTGAATACTCATTTACATTAAAAAAACACACATGCATAAGCACACATATACCGTTGATTCACTTGTGATCATACTTGGTAAAATTGCAGCCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTG</genome_strand>
        <mrna_strand>GAATTTG.......................................................................................................................................................................................GTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAG........................................................................................AGGCTTCTGGATGCATCACACCGTGACTTGAGGAGAGCGAGAGCTGCAGCATTGAACATTGTCCCGACCAGCACTGGTGCAGCAAAGGCTGTGTCTCTAGTGCTACCTCAGCTCAAGGGAAAGCTTAATGGAATTGCTCTCCGAGTGCCAACACCTAATGTTTCGGTTGTTGACCTTGTTATAAATGTTGAAAAGAAAGGAATTTCAGCTGAAGATGTCAATGCAGCTTTCAGAAAGGCAGCTGACGGTCCGTTGAATGGCATATTGGCTGTTTGTGATGAGCCTCTTGTGTCAGTTGACTTCCGATGCAGTGATGTTTCCACCACCATCGACTCCTCTTTAACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAG..................................................................................................................................CCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E289770" ref_strand="+" ref_description="SGN-E289770 [cLET-4-N22]">
      <seq>tgatgcagcaaaagctgtgtctctagagctacctcagctcaagggaaagcttaatggaattgctctccgagtgccaacacctaatgtttcggttgctgaccttgttataaatgttgaaaagaaaggaatttcagctgaagatgtcaatgcagctttcagaaaggcagctgacggtccgttgaatggcatattggctgtttgtgatgagcctcttgtgtcagttgacttccgatgcagtgatgtttccaccaccatcgactcctctttaaccatggttatgggagacnacntggtcaagattggcgcttggtatgacaacgagtggggatacagccaacgtgtggtcgacttagctcatctggtagcagacaaatggcccggttcagctgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="3209" stop="2088"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2909" g_stop="2577" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="333" r_length="333" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="2576" i_stop="2447" i_length="130">
            <donor d_prob="0.877" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="2446" g_stop="2388" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="392" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E289770" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2909" e_stop="2577"/>
          <exon e_start="2446" e_stop="2388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGCAGCAAAGGCTGTGTCTCTAGTGCTACCTCAGCTCAAGGGAAAGCTTAATGGAATTGCTCTCCGAGTGCCAACACCTAATGTTTCGGTTGTTGACCTTGTTATAAATGTTGAAAAGAAAGGAATTTCAGCTGAAGATGTCAATGCAGCTTTCAGAAAGGCAGCTGACGGTCCGTTGAATGGCATATTGGCTGTTTGTGATGAGCCTCTTGTGTCAGTTGACTTCCGATGCAGTGATGTTTCCACCACCATCGACTCCTCTTTAACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAGGTAACCTGAACACAATCATTTCGCATACTTATACAACCAACCTGAATACTCATTTACATTAAAAAAACACACATGCATAAGCACACATATACCGTTGATTCACTTGTGATCATACTTGGTAAAATTGCAGCCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAG</genome_strand>
        <mrna_strand>TGATGCAGCAAAAGCTGTGTCTCTAGAGCTACCTCAGCTCAAGGGAAAGCTTAATGGAATTGCTCTCCGAGTGCCAACACCTAATGTTTCGGTTGCTGACCTTGTTATAAATGTTGAAAAGAAAGGAATTTCAGCTGAAGATGTCAATGCAGCTTTCAGAAAGGCAGCTGACGGTCCGTTGAATGGCATATTGGCTGTTTGTGATGAGCCTCTTGTGTCAGTTGACTTCCGATGCAGTGATGTTTCCACCACCATCGACTCCTCTTTAACCATGGTTATGGGAGACNACNTGGTCAAGATTGGCGCTTGGTATGACAACGAGTGGGGATACAG..................................................................................................................................CCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E739717" ref_strand="+" ref_description="SGN-E739717 [LC18CD02]">
      <seq>gcatctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgttaagggaactatgacaacaactcactcttacaccggagatcagaggcttctggatgcatcacaccgtgacttgaggagagcgagagctgcagcattgaacattgtcccgaccagcactggtgcagcaaaggctgtgtctctagtgctacctcagctcaagggaaagcttaatggaattgctctccgagtgccaacacctaatgtttcggttgttgaccttgttataaatgttgaaaagaaaggaatttcagctgaagatgtcaatgcagctttcagaaaggcagctgacggtccgttgaatggcatattggctgtttgtgatgagcctcttgtgtcagttgacttccgatgcagtgatgtttccaccaccatcgactcctctttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5664" stop="2341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5364" g_stop="5278" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="195" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="360" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4126" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="508" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4125" i_stop="3122" i_length="1004">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3121" g_stop="3072" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="558" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3071" i_stop="2984" i_length="88">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2983" g_stop="2641" g_length="343"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="901" r_length="343" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E739717" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>901</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5364" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4126"/>
          <exon e_start="3121" e_stop="3072"/>
          <exon e_start="2983" e_stop="2641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAGGTAAACTACGCGTTAATAGCATTTTTGATCCCTCGGTTATTGGTAGATTCTACTTTTAGTACTCGTAATATCTAAGCCGAGGGTCTATCAGAAACAGTCTCTCTGCCTTCACAAGGTCCCTTGACCTTTCATGCTAATATACATAACTAACGTAGCGAATGTCATAATTCATCCTATCATAACATTTGACTGATGCATACCTATGTTGCTCGGACCCTTCAAAAATGTTGTCAGATATGTGCCTGATTCTCCAAAAGTTACTCATTATTTGCTTAACGAGATAAAATCAACGAGATTGATCAATACAAGTCCAGCACTTTCAACATGATGAATCCTGAGAAAAGATGCTGATTAAATTACCTAATAATGTTGTTCGAAAACTTACAGGGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAGGTCAGTGCAATTTATGTGAACGTGTTTGACTGGACACATAGTTTAAAAAAATAAAGCAAGATTTTTGAAAAAAAGGATCATTCTTTTGTGAACGGACTAAAAATGAAATTGTGTCACATAAATTTGGACGGAGGGAGTATATTTAATGTTCAAGAAGACATTGAAGTAATGTTCTACCTTTGTAAATGCAGCAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTGGTAAGCAGAAGATTAATACTGTTCAAATTTATGTGGTTTTAAATGTTCGATTATTTATATCATCGGAAACAGACTCTCTACCTTCACAAATTAGGGGTAAGGCTGTGTACGCACCACCTTCCCAGATCTCACTTGTAGGATTACACTGCGTATGTTGTTTGACTATTTTCATTCACTTTGTAGGTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAGGTAATCATGATATACGATACAACAGGGGAATTTGTGAAAACGTGCACCTTACAGTGACGCTGAATGGATTTGATTATGTTGTATGCAGAGGCTTCTGGATGCATCACACCGTGACTTGAGGAGAGCGAGAGCTGCAGCATTGAACATTGTCCCGACCAGCACTGGTGCAGCAAAGGCTGTGTCTCTAGTGCTACCTCAGCTCAAGGGAAAGCTTAATGGAATTGCTCTCCGAGTGCCAACACCTAATGTTTCGGTTGTTGACCTTGTTATAAATGTTGAAAAGAAAGGAATTTCAGCTGAAGATGTCAATGCAGCTTTCAGAAAGGCAGCTGACGGTCCGTTGAATGGCATATTGGCTGTTTGTGATGAGCCTCTTGTGTCAGTTGACTTCCGATGCAGTGATGTTTCCACCACCATCGACTCCTCTTTAA</genome_strand>
        <mrna_strand>GCATCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAG........................................................................................AGGCTTCTGGATGCATCACACCGTGACTTGAGGAGAGCGAGAGCTGCAGCATTGAACATTGTCCCGACCAGCACTGGTGCAGCAAAGGCTGTGTCTCTAGTGCTACCTCAGCTCAAGGGAAAGCTTAATGGAATTGCTCTCCGAGTGCCAACACCTAATGTTTCGGTTGTTGACCTTGTTATAAATGTTGAAAAGAAAGGAATTTCAGCTGAAGATGTCAATGCAGCTTTCAGAAAGGCAGCTGACGGTCCGTTGAATGGCATATTGGCTGTTTGTGATGAGCCTCTTGTGTCAGTTGACTTCCGATGCAGTGATGTTTCCACCACCATCGACTCCTCTTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E281778" ref_strand="+" ref_description="SGN-E281778 [cLER-14-D17]">
      <seq>tgaacaagactactctcacgaggttgccaatatcgtaagcaatgcctcttgcaccaccaactgcttggccccttttgcaaaaatcctggatgaagaatttggtattgttaagggaactatgacaacaactcactcttacaccggagatcagaggcttctggatgcatcacaccgtgacttgaggagagcgagagctgcagcattgaacattgtcccgaccagcactggtgcagcaaaggctgtgtctctagtgctacctcagctcaagggaaagcttaatggaattgctctccgagtgccaacacctaatgtttcggttgttgaccttgttataaatgttgaaaagaaaggaatttcagctgaagatgtcaatgcagctttcagaaaggcagctgacggtccgttgaatggcatattggctgtttgtgatgagcctcttgtgtcagttgacttccgatgcagtgatgtttccaccaccatcgactcctcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="3896" stop="2342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3596" g_stop="3558" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3557" i_stop="3367" i_length="191">
            <donor d_prob="0.981" d_score="0.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3366" g_stop="3305" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="101" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3304" i_stop="3122" i_length="183">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3121" g_stop="3072" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="151" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3071" i_stop="2984" i_length="88">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2983" g_stop="2642" g_length="342"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="493" r_length="342" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E281778" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281778" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3596" e_stop="3558"/>
          <exon e_start="3366" e_stop="3305"/>
          <exon e_start="3121" e_stop="3072"/>
          <exon e_start="2983" e_stop="2642"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAGGTCAGTGCAATTTATGTGAACGTGTTTGACTGGACACATAGTTTAAAAAAATAAAGCAAGATTTTTGAAAAAAAGGATCATTCTTTTGTGAACGGACTAAAAATGAAATTGTGTCACATAAATTTGGACGGAGGGAGTATATTTAATGTTCAAGAAGACATTGAAGTAATGTTCTACCTTTGTAAATGCAGCAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTGGTAAGCAGAAGATTAATACTGTTCAAATTTATGTGGTTTTAAATGTTCGATTATTTATATCATCGGAAACAGACTCTCTACCTTCACAAATTAGGGGTAAGGCTGTGTACGCACCACCTTCCCAGATCTCACTTGTAGGATTACACTGCGTATGTTGTTTGACTATTTTCATTCACTTTGTAGGTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAGGTAATCATGATATACGATACAACAGGGGAATTTGTGAAAACGTGCACCTTACAGTGACGCTGAATGGATTTGATTATGTTGTATGCAGAGGCTTCTGGATGCATCACACCGTGACTTGAGGAGAGCGAGAGCTGCAGCATTGAACATTGTCCCGACCAGCACTGGTGCAGCAAAGGCTGTGTCTCTAGTGCTACCTCAGCTCAAGGGAAAGCTTAATGGAATTGCTCTCCGAGTGCCAACACCTAATGTTTCGGTTGTTGACCTTGTTATAAATGTTGAAAAGAAAGGAATTTCAGCTGAAGATGTCAATGCAGCTTTCAGAAAGGCAGCTGACGGTCCGTTGAATGGCATATTGGCTGTTTGTGATGAGCCTCTTGTGTCAGTTGACTTCCGATGCAGTGATGTTTCCACCACCATCGACTCCTCTTTA</genome_strand>
        <mrna_strand>TGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAG...............................................................................................................................................................................................CAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTG.......................................................................................................................................................................................GTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAG........................................................................................AGGCTTCTGGATGCATCACACCGTGACTTGAGGAGAGCGAGAGCTGCAGCATTGAACATTGTCCCGACCAGCACTGGTGCAGCAAAGGCTGTGTCTCTAGTGCTACCTCAGCTCAAGGGAAAGCTTAATGGAATTGCTCTCCGAGTGCCAACACCTAATGTTTCGGTTGTTGACCTTGTTATAAATGTTGAAAAGAAAGGAATTTCAGCTGAAGATGTCAATGCAGCTTTCAGAAAGGCAGCTGACGGTCCGTTGAATGGCATATTGGCTGTTTGTGATGAGCCTCTTGTGTCAGTTGACTTCCGATGCAGTGATGTTTCCACCACCATCGACTCCTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E727730" ref_strand="+" ref_description="SGN-E727730 [LA15CC11]">
      <seq>taagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgacattgttatcgagggaaccggtgtgttcgttgatggtccgggtgctgggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgatattcctacatatgttgttggagtgaatgaacaagactactctcacgaggttgccaatatcgtaagcaatgcctcttgcaccaccaactgcttggccccttttgcaaaaatcctggatgaagaatttggtattgttaagggaactatgacaacaactcactcttacaccggagatcagaggcttctggatgcatcacaccgtgacttgaggagagcgagagctgcagcattgaacattgtcccgaccagcactggtgcagcaaaggctgtgtctctagtgctacctcagctcaagggaaagcttaatggaattgctctccgagtgccaacacctaatgtttcggttgttgaccttgttataaatgttgaaaagaaaggaatttcagctgaagatgtcaatgcagctttcagaaaggcagctgacggtccgttgaatggcatattggctgtttgtgatgagcctcttgtgtcagttgacttccgatgcagtgatgtttccaccaccatcgactcctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="4581" stop="2346"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4390" g_stop="4384" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="0.857"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4273" g_stop="4106" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="175" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4105" i_stop="3719" i_length="387">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3718" g_stop="3558" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="336" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3557" i_stop="3367" i_length="191">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3366" g_stop="3305" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="398" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3304" i_stop="3122" i_length="183">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3121" g_stop="3072" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="448" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3071" i_stop="2984" i_length="88">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2983" g_stop="2646" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="786" r_length="338" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E727730" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4390" e_stop="4384"/>
          <exon e_start="4273" e_stop="4106"/>
          <exon e_start="3718" e_stop="3558"/>
          <exon e_start="3366" e_stop="3305"/>
          <exon e_start="3121" e_stop="3072"/>
          <exon e_start="2983" e_stop="2646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAGGTAAACTACGCGTTAATAGCATTTTTGATCCCTCGGTTATTGGTAGATTCTACTTTTAGTACTCGTAATATCTAAGCCGAGGGTCTATCAGAAACAGTCTCTCTGCCTTCACAAGGTCCCTTGACCTTTCATGCTAATATACATAACTAACGTAGCGAATGTCATAATTCATCCTATCATAACATTTGACTGATGCATACCTATGTTGCTCGGACCCTTCAAAAATGTTGTCAGATATGTGCCTGATTCTCCAAAAGTTACTCATTATTTGCTTAACGAGATAAAATCAACGAGATTGATCAATACAAGTCCAGCACTTTCAACATGATGAATCCTGAGAAAAGATGCTGATTAAATTACCTAATAATGTTGTTCGAAAACTTACAGGGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAGGTCAGTGCAATTTATGTGAACGTGTTTGACTGGACACATAGTTTAAAAAAATAAAGCAAGATTTTTGAAAAAAAGGATCATTCTTTTGTGAACGGACTAAAAATGAAATTGTGTCACATAAATTTGGACGGAGGGAGTATATTTAATGTTCAAGAAGACATTGAAGTAATGTTCTACCTTTGTAAATGCAGCAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTGGTAAGCAGAAGATTAATACTGTTCAAATTTATGTGGTTTTAAATGTTCGATTATTTATATCATCGGAAACAGACTCTCTACCTTCACAAATTAGGGGTAAGGCTGTGTACGCACCACCTTCCCAGATCTCACTTGTAGGATTACACTGCGTATGTTGTTTGACTATTTTCATTCACTTTGTAGGTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAGGTAATCATGATATACGATACAACAGGGGAATTTGTGAAAACGTGCACCTTACAGTGACGCTGAATGGATTTGATTATGTTGTATGCAGAGGCTTCTGGATGCATCACACCGTGACTTGAGGAGAGCGAGAGCTGCAGCATTGAACATTGTCCCGACCAGCACTGGTGCAGCAAAGGCTGTGTCTCTAGTGCTACCTCAGCTCAAGGGAAAGCTTAATGGAATTGCTCTCCGAGTGCCAACACCTAATGTTTCGGTTGTTGACCTTGTTATAAATGTTGAAAAGAAAGGAATTTCAGCTGAAGATGTCAATGCAGCTTTCAGAAAGGCAGCTGACGGTCCGTTGAATGGCATATTGGCTGTTTGTGATGAGCCTCTTGTGTCAGTTGACTTCCGATGCAGTGATGTTTCCACCACCATCGACTCCTC</genome_strand>
        <mrna_strand>TAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................GGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAG...............................................................................................................................................................................................CAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTG.......................................................................................................................................................................................GTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAG........................................................................................AGGCTTCTGGATGCATCACACCGTGACTTGAGGAGAGCGAGAGCTGCAGCATTGAACATTGTCCCGACCAGCACTGGTGCAGCAAAGGCTGTGTCTCTAGTGCTACCTCAGCTCAAGGGAAAGCTTAATGGAATTGCTCTCCGAGTGCCAACACCTAATGTTTCGGTTGTTGACCTTGTTATAAATGTTGAAAAGAAAGGAATTTCAGCTGAAGATGTCAATGCAGCTTTCAGAAAGGCAGCTGACGGTCCGTTGAATGGCATATTGGCTGTTTGTGATGAGCCTCTTGTGTCAGTTGACTTCCGATGCAGTGATGTTTCCACCACCATCGACTCCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E735349" ref_strand="+" ref_description="SGN-E735349 [LC01AF09]">
      <seq>cgctctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgttaagggaactatgacaacaactcactcttacaccggagatcagaggcttctggatgcatcacaccgtgacttgaggagagcgagagctgcagcattgaacattgtcccgaccagcactggtgcagcaaaggctgtgtctctagtgctacctcagctcaagggaaagcttaatggaattgctctccgagtgccaacacctaatgtttcggttgttgaccttgttataaatgttgaaaaagaaggaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5660" stop="2480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5360" g_stop="5278" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="87" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="195" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="360" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4126" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="508" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4125" i_stop="3122" i_length="1004">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3121" g_stop="3072" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="558" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3071" i_stop="2984" i_length="88">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="2983" g_stop="2780" g_length="204"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="762" r_length="204" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E735349" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5360" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4126"/>
          <exon e_start="3121" e_stop="3072"/>
          <exon e_start="2983" e_stop="2780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAGGTAAACTACGCGTTAATAGCATTTTTGATCCCTCGGTTATTGGTAGATTCTACTTTTAGTACTCGTAATATCTAAGCCGAGGGTCTATCAGAAACAGTCTCTCTGCCTTCACAAGGTCCCTTGACCTTTCATGCTAATATACATAACTAACGTAGCGAATGTCATAATTCATCCTATCATAACATTTGACTGATGCATACCTATGTTGCTCGGACCCTTCAAAAATGTTGTCAGATATGTGCCTGATTCTCCAAAAGTTACTCATTATTTGCTTAACGAGATAAAATCAACGAGATTGATCAATACAAGTCCAGCACTTTCAACATGATGAATCCTGAGAAAAGATGCTGATTAAATTACCTAATAATGTTGTTCGAAAACTTACAGGGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAGGTCAGTGCAATTTATGTGAACGTGTTTGACTGGACACATAGTTTAAAAAAATAAAGCAAGATTTTTGAAAAAAAGGATCATTCTTTTGTGAACGGACTAAAAATGAAATTGTGTCACATAAATTTGGACGGAGGGAGTATATTTAATGTTCAAGAAGACATTGAAGTAATGTTCTACCTTTGTAAATGCAGCAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTGGTAAGCAGAAGATTAATACTGTTCAAATTTATGTGGTTTTAAATGTTCGATTATTTATATCATCGGAAACAGACTCTCTACCTTCACAAATTAGGGGTAAGGCTGTGTACGCACCACCTTCCCAGATCTCACTTGTAGGATTACACTGCGTATGTTGTTTGACTATTTTCATTCACTTTGTAGGTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAGGTAATCATGATATACGATACAACAGGGGAATTTGTGAAAACGTGCACCTTACAGTGACGCTGAATGGATTTGATTATGTTGTATGCAGAGGCTTCTGGATGCATCACACCGTGACTTGAGGAGAGCGAGAGCTGCAGCATTGAACATTGTCCCGACCAGCACTGGTGCAGCAAAGGCTGTGTCTCTAGTGCTACCTCAGCTCAAGGGAAAGCTTAATGGAATTGCTCTCCGAGTGCCAACACCTAATGTTTCGGTTGTTGACCTTGTTATAAATGTTGAAAAGAAAGGAATT</genome_strand>
        <mrna_strand>CTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAG........................................................................................AGGCTTCTGGATGCATCACACCGTGACTTGAGGAGAGCGAGAGCTGCAGCATTGAACATTGTCCCGACCAGCACTGGTGCAGCAAAGGCTGTGTCTCTAGTGCTACCTCAGCTCAAGGGAAAGCTTAATGGAATTGCTCTCCGAGTGCCAACACCTAATGTTTCGGTTGTTGACCTTGTTATAAATGTTGAAAAAGAAGGAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E281867" ref_strand="+" ref_description="SGN-E281867 [cLES-2-K14]">
      <seq>gatggtccggctgctgggaagcacatccaagctggtgccaagaaagatatcatcactgcaccagcaaaaggtgctgatattcctacatatgctgccggagtgaatgaacaagactactctcacgaggctgccaatatacgaagcaatgcctcttgcaccaccaactgcttggccccttttgcaaacatcctggatgaagaatatggctttggtaaaggaactatgacaacaactcactcttacaccggagatcagaggcttctggatgcatcacaccgtgacttgaggagagctagagctgcagcatcgaacattgtcccgaccagcactggtgcagcatacgctgtgtctctagtgctacctcagctcaagggaaagcttaatggaattgctctccgagtgccaacacctaatgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="4000" stop="2522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3700" g_stop="3558" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="143" r_length="143" r_score="0.937"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3557" i_stop="3367" i_length="191">
            <donor d_prob="0.981" d_score="0.88"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3366" g_stop="3305" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="205" r_length="62" r_score="0.968"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3304" i_stop="3122" i_length="183">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3121" g_stop="3072" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="255" r_length="50" r_score="0.920"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3071" i_stop="2984" i_length="88">
            <donor d_prob="0.924" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2983" g_stop="2821" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="418" r_length="163" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E281867" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281867" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3700" e_stop="3558"/>
          <exon e_start="3366" e_stop="3305"/>
          <exon e_start="3121" e_stop="3072"/>
          <exon e_start="2983" e_stop="2821"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAGGTCAGTGCAATTTATGTGAACGTGTTTGACTGGACACATAGTTTAAAAAAATAAAGCAAGATTTTTGAAAAAAAGGATCATTCTTTTGTGAACGGACTAAAAATGAAATTGTGTCACATAAATTTGGACGGAGGGAGTATATTTAATGTTCAAGAAGACATTGAAGTAATGTTCTACCTTTGTAAATGCAGCAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTGGTAAGCAGAAGATTAATACTGTTCAAATTTATGTGGTTTTAAATGTTCGATTATTTATATCATCGGAAACAGACTCTCTACCTTCACAAATTAGGGGTAAGGCTGTGTACGCACCACCTTCCCAGATCTCACTTGTAGGATTACACTGCGTATGTTGTTTGACTATTTTCATTCACTTTGTAGGTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAGGTAATCATGATATACGATACAACAGGGGAATTTGTGAAAACGTGCACCTTACAGTGACGCTGAATGGATTTGATTATGTTGTATGCAGAGGCTTCTGGATGCATCACACCGTGACTTGAGGAGAGCGAGAGCTGCAGCATTGAACATTGTCCCGACCAGCACTGGTGCAGCAAAGGCTGTGTCTCTAGTGCTACCTCAGCTCAAGGGAAAGCTTAATGGAATTGCTCTCCGAGTGCCAACACCTAATGTTT</genome_strand>
        <mrna_strand>GATGGTCCGGCTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGATATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGCTGCCGGAGTGAATGAACAAGACTACTCTCACGAGGCTGCCAATATACGAAG...............................................................................................................................................................................................CAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAACATCCTGGATGAAGAATATG.......................................................................................................................................................................................GCTTTGGTAAAGGAACTATGACAACAACTCACTCTTACACCGGAGATCAG........................................................................................AGGCTTCTGGATGCATCACACCGTGACTTGAGGAGAGCTAGAGCTGCAGCATCGAACATTGTCCCGACCAGCACTGGTGCAGCATACGCTGTGTCTCTAGTGCTACCTCAGCTCAAGGGAAAGCTTAATGGAATTGCTCTCCGAGTGCCAACACCTAATGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E316411" ref_strand="+" ref_description="SGN-E316411 [cTOA-25-J3]">
      <seq>tggcattgacattgttattgagggaactggtgtgtttgttgatggtccaggtgcagggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgacattccaacctatgttgttggagtgaacgagcaagactactctcatgagattgctaacatcataagcaatgcctcttgcaccactaactgcttggctccatttgtgaaagtcatggatgaagaacttggaattgtgaagggtacaatgacaacaactcactcttacaccggagatcagaggcttctcgatgcttcacaccgtgacttaaggagagcgagagcagcagcattgaacattgtcccaaccagtactggtgcagccaaggcagtgtctttagtgctacctcacctcaaggggaagctgaatggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="4020" stop="2553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3718" g_stop="3558" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="183" r_length="161" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="3557" i_stop="3367" i_length="191">
            <donor d_prob="0.981" d_score="0.86"/>
            <acceptor a_prob="0.988" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3366" g_stop="3305" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="184" r_stop="245" r_length="62" r_score="0.871"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3304" i_stop="3122" i_length="183">
            <donor d_prob="0.997" d_score="0.84"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3121" g_stop="3072" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="295" r_length="50" r_score="0.920"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3071" i_stop="2984" i_length="88">
            <donor d_prob="0.924" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="2983" g_stop="2852" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="427" r_length="132" r_score="0.902"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E316411" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316411" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3718" e_stop="3558"/>
          <exon e_start="3366" e_stop="3305"/>
          <exon e_start="3121" e_stop="3072"/>
          <exon e_start="2983" e_stop="2852"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAGGTCAGTGCAATTTATGTGAACGTGTTTGACTGGACACATAGTTTAAAAAAATAAAGCAAGATTTTTGAAAAAAAGGATCATTCTTTTGTGAACGGACTAAAAATGAAATTGTGTCACATAAATTTGGACGGAGGGAGTATATTTAATGTTCAAGAAGACATTGAAGTAATGTTCTACCTTTGTAAATGCAGCAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTGGTAAGCAGAAGATTAATACTGTTCAAATTTATGTGGTTTTAAATGTTCGATTATTTATATCATCGGAAACAGACTCTCTACCTTCACAAATTAGGGGTAAGGCTGTGTACGCACCACCTTCCCAGATCTCACTTGTAGGATTACACTGCGTATGTTGTTTGACTATTTTCATTCACTTTGTAGGTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAGGTAATCATGATATACGATACAACAGGGGAATTTGTGAAAACGTGCACCTTACAGTGACGCTGAATGGATTTGATTATGTTGTATGCAGAGGCTTCTGGATGCATCACACCGTGACTTGAGGAGAGCGAGAGCTGCAGCATTGAACATTGTCCCGACCAGCACTGGTGCAGCAAAGGCTGTGTCTCTAGTGCTACCTCAGCTCAAGGGAAAGCTTAATGGA</genome_strand>
        <mrna_strand>GGAACTGGTGTGTTTGTTGATGGTCCAGGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAG...............................................................................................................................................................................................CAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTG.......................................................................................................................................................................................GAATTGTGAAGGGTACAATGACAACAACTCACTCTTACACCGGAGATCAG........................................................................................AGGCTTCTCGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAGCATTGAACATTGTCCCAACCAGTACTGGTGCAGCCAAGGCAGTGTCTTTAGTGCTACCTCACCTCAAGGGGAAGCTGAATGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E738128" ref_strand="+" ref_description="SGN-E738128 [LC12CA01]">
      <seq>gcaatccatggcttctcatgcagctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgacattgttatcgagggaaccggtgtgttcgttgatggtccgggtgctgggaagcacatccaggctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgatattcctacatatgttgttggagtgaatgaacaagactactctcacgaggttgccaatatcgtaagcaatgcctcttgcaccaccaactgcttggccccttttgcaaaaatcctggatgaagaatttggtattgttaagggaactatgacaacaactcactcttacaccggagatcagaggcttctggatgcatcacaccgtgacttgaggagagcgagagctgcagcattgaacattgtcccgaccagcactggtgcagcaaaggctgtgtctctagtgctacttcagctcagggaaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5681" stop="2559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5383" g_stop="5278" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="214" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="379" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4106" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="547" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4105" i_stop="3719" i_length="387">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3718" g_stop="3558" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="708" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3557" i_stop="3367" i_length="191">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3366" g_stop="3305" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="770" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3304" i_stop="3122" i_length="183">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3121" g_stop="3072" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="771" r_stop="820" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="3071" i_stop="2984" i_length="88">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2983" g_stop="2859" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="821" r_stop="944" r_length="124" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E738128" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>945</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5383" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4106"/>
          <exon e_start="3718" e_stop="3558"/>
          <exon e_start="3366" e_stop="3305"/>
          <exon e_start="3121" e_stop="3072"/>
          <exon e_start="2983" e_stop="2859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCATGGCTTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAGGTAAACTACGCGTTAATAGCATTTTTGATCCCTCGGTTATTGGTAGATTCTACTTTTAGTACTCGTAATATCTAAGCCGAGGGTCTATCAGAAACAGTCTCTCTGCCTTCACAAGGTCCCTTGACCTTTCATGCTAATATACATAACTAACGTAGCGAATGTCATAATTCATCCTATCATAACATTTGACTGATGCATACCTATGTTGCTCGGACCCTTCAAAAATGTTGTCAGATATGTGCCTGATTCTCCAAAAGTTACTCATTATTTGCTTAACGAGATAAAATCAACGAGATTGATCAATACAAGTCCAGCACTTTCAACATGATGAATCCTGAGAAAAGATGCTGATTAAATTACCTAATAATGTTGTTCGAAAACTTACAGGGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAGGTCAGTGCAATTTATGTGAACGTGTTTGACTGGACACATAGTTTAAAAAAATAAAGCAAGATTTTTGAAAAAAAGGATCATTCTTTTGTGAACGGACTAAAAATGAAATTGTGTCACATAAATTTGGACGGAGGGAGTATATTTAATGTTCAAGAAGACATTGAAGTAATGTTCTACCTTTGTAAATGCAGCAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTGGTAAGCAGAAGATTAATACTGTTCAAATTTATGTGGTTTTAAATGTTCGATTATTTATATCATCGGAAACAGACTCTCTACCTTCACAAATTAGGGGTAAGGCTGTGTACGCACCACCTTCCCAGATCTCACTTGTAGGATTACACTGCGTATGTTGTTTGACTATTTTCATTCACTTTGTAGGTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAGGTAATCATGATATACGATACAACAGGGGAATTTGTGAAAACGTGCACCTTACAGTGACGCTGAATGGATTTGATTATGTTGTATGCAGAGGCTTCTGGATGCATCACACCGTGACTTGAGGAGAGCGAGAGCTGCAGCATTGAACATTGTCCCGACCAGCACTGGTGCAGCAAAGGCTGTGTCTCTAGTGCTACCTCAGCTCAAGGGAAAGCT</genome_strand>
        <mrna_strand>GCAATCCATGGCTTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................GGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAGGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAG...............................................................................................................................................................................................CAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTG.......................................................................................................................................................................................GTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAG........................................................................................AGGCTTCTGGATGCATCACACCGTGACTTGAGGAGAGCGAGAGCTGCAGCATTGAACATTGTCCCGACCAGCACTGGTGCAGCAAAGGCTGTGTCTCTAGTGCTACTTCAGCTC-AGGGAAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E738081" ref_strand="+" ref_description="SGN-E738081 [LC12BC01]">
      <seq>ctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacatgatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgacattgttatcgagggaaccggtgtgttcgttgatggtccgggtgctgggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgatattcctacatatgttgttggagtgaatgaacaagactactctcacgaggttgccaatatcgtaagcaatgcctcttgcaccaccaactgcttggccccttttgcaaaaatcctggatgaagaatttggtattgttaagggaactatgacaacaactcactcttacaccggagatcagaggcttctggatgcatcacaccgtgacttgaggagagcgagagctgcagcattgaacattgtcccgaccagcactggtgcagcaaaggctgtgtctctagtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5660" stop="2580"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5360" g_stop="5278" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="191" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="356" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4106" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="524" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4105" i_stop="3719" i_length="387">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3718" g_stop="3558" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="685" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3557" i_stop="3367" i_length="191">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3366" g_stop="3305" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="747" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3304" i_stop="3122" i_length="183">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3121" g_stop="3072" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="748" r_stop="797" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="3071" i_stop="2984" i_length="88">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2983" g_stop="2880" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="798" r_stop="901" r_length="104" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E738081" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>901</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738081" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5360" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4106"/>
          <exon e_start="3718" e_stop="3558"/>
          <exon e_start="3366" e_stop="3305"/>
          <exon e_start="3121" e_stop="3072"/>
          <exon e_start="2983" e_stop="2880"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAGGTAAACTACGCGTTAATAGCATTTTTGATCCCTCGGTTATTGGTAGATTCTACTTTTAGTACTCGTAATATCTAAGCCGAGGGTCTATCAGAAACAGTCTCTCTGCCTTCACAAGGTCCCTTGACCTTTCATGCTAATATACATAACTAACGTAGCGAATGTCATAATTCATCCTATCATAACATTTGACTGATGCATACCTATGTTGCTCGGACCCTTCAAAAATGTTGTCAGATATGTGCCTGATTCTCCAAAAGTTACTCATTATTTGCTTAACGAGATAAAATCAACGAGATTGATCAATACAAGTCCAGCACTTTCAACATGATGAATCCTGAGAAAAGATGCTGATTAAATTACCTAATAATGTTGTTCGAAAACTTACAGGGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAGGTCAGTGCAATTTATGTGAACGTGTTTGACTGGACACATAGTTTAAAAAAATAAAGCAAGATTTTTGAAAAAAAGGATCATTCTTTTGTGAACGGACTAAAAATGAAATTGTGTCACATAAATTTGGACGGAGGGAGTATATTTAATGTTCAAGAAGACATTGAAGTAATGTTCTACCTTTGTAAATGCAGCAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTGGTAAGCAGAAGATTAATACTGTTCAAATTTATGTGGTTTTAAATGTTCGATTATTTATATCATCGGAAACAGACTCTCTACCTTCACAAATTAGGGGTAAGGCTGTGTACGCACCACCTTCCCAGATCTCACTTGTAGGATTACACTGCGTATGTTGTTTGACTATTTTCATTCACTTTGTAGGTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAGGTAATCATGATATACGATACAACAGGGGAATTTGTGAAAACGTGCACCTTACAGTGACGCTGAATGGATTTGATTATGTTGTATGCAGAGGCTTCTGGATGCATCACACCGTGACTTGAGGAGAGCGAGAGCTGCAGCATTGAACATTGTCCCGACCAGCACTGGTGCAGCAAAGGCTGTGTCTCTAGTGCT</genome_strand>
        <mrna_strand>CTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACATGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................GGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAG...............................................................................................................................................................................................CAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTG.......................................................................................................................................................................................GTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAG........................................................................................AGGCTTCTGGATGCATCACACCGTGACTTGAGGAGAGCGAGAGCTGCAGCATTGAACATTGTCCCGACCAGCACTGGTGCAGCAAAGGCTGTGTCTCTAGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E287921" ref_strand="+" ref_description="SGN-E287921 [cLES-19-P7]">
      <seq>gaacattcaaagctgatgtcaaaatagtggataatgaaaccattagtgttgatggaaagcacatcaaggtagtttctagcagggatcccctcaagcttccttgggctgaacttggcattgacattgttattgagggaactggtgtgtttgttgatggtccacgtgcagggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgacattccaacctatgttgttggagtgaacgagcaagactactctcatgagattgctaacatcataagcaatgcctcttgcaccactaactgcttggctccatttgtgaaagtcatggatgaagaacttggaattgtgaagggtacaatgacaacaactcactcttacaccggagatcagaggcttctcgatgcttcacaccgtgacttaaggagagcgagagcagcagcattgaacattgtcccaaccagtactggtgcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="4539" stop="2602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4239" g_stop="4106" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="0.903"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4105" i_stop="3719" i_length="387">
            <donor d_prob="0.986" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3718" g_stop="3558" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="295" r_length="161" r_score="0.907"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3557" i_stop="3367" i_length="191">
            <donor d_prob="0.981" d_score="0.86"/>
            <acceptor a_prob="0.988" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3366" g_stop="3305" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="357" r_length="62" r_score="0.871"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3304" i_stop="3122" i_length="183">
            <donor d_prob="0.997" d_score="0.84"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3121" g_stop="3072" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="407" r_length="50" r_score="0.920"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3071" i_stop="2984" i_length="88">
            <donor d_prob="0.924" d_score="0.92"/>
            <acceptor a_prob="0.995" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2983" g_stop="2902" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="489" r_length="82" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E287921" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287921" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4239" e_stop="4106"/>
          <exon e_start="3718" e_stop="3558"/>
          <exon e_start="3366" e_stop="3305"/>
          <exon e_start="3121" e_stop="3072"/>
          <exon e_start="2983" e_stop="2902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAGGTAAACTACGCGTTAATAGCATTTTTGATCCCTCGGTTATTGGTAGATTCTACTTTTAGTACTCGTAATATCTAAGCCGAGGGTCTATCAGAAACAGTCTCTCTGCCTTCACAAGGTCCCTTGACCTTTCATGCTAATATACATAACTAACGTAGCGAATGTCATAATTCATCCTATCATAACATTTGACTGATGCATACCTATGTTGCTCGGACCCTTCAAAAATGTTGTCAGATATGTGCCTGATTCTCCAAAAGTTACTCATTATTTGCTTAACGAGATAAAATCAACGAGATTGATCAATACAAGTCCAGCACTTTCAACATGATGAATCCTGAGAAAAGATGCTGATTAAATTACCTAATAATGTTGTTCGAAAACTTACAGGGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAGGTCAGTGCAATTTATGTGAACGTGTTTGACTGGACACATAGTTTAAAAAAATAAAGCAAGATTTTTGAAAAAAAGGATCATTCTTTTGTGAACGGACTAAAAATGAAATTGTGTCACATAAATTTGGACGGAGGGAGTATATTTAATGTTCAAGAAGACATTGAAGTAATGTTCTACCTTTGTAAATGCAGCAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTGGTAAGCAGAAGATTAATACTGTTCAAATTTATGTGGTTTTAAATGTTCGATTATTTATATCATCGGAAACAGACTCTCTACCTTCACAAATTAGGGGTAAGGCTGTGTACGCACCACCTTCCCAGATCTCACTTGTAGGATTACACTGCGTATGTTGTTTGACTATTTTCATTCACTTTGTAGGTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAGGTAATCATGATATACGATACAACAGGGGAATTTGTGAAAACGTGCACCTTACAGTGACGCTGAATGGATTTGATTATGTTGTATGCAGAGGCTTCTGGATGCATCACACCGTGACTTGAGGAGAGCGAGAGCTGCAGCATTGAACATTGTCCCGACCAGCACTGGTGCAG</genome_strand>
        <mrna_strand>GAACATTCAAAGCTGATGTCAAAATAGTGGATAATGAAACCATTAGTGTTGATGGAAAGCACATCAAGGTAGTTTCTAGCAGGGATCCCCTCAAGCTTCCTTGGGCTGAACTTGGCATTGACATTGTTATTGAG...................................................................................................................................................................................................................................................................................................................................................................................................GGAACTGGTGTGTTTGTTGATGGTCCACGTGCAGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGACATTCCAACCTATGTTGTTGGAGTGAACGAGCAAGACTACTCTCATGAGATTGCTAACATCATAAG...............................................................................................................................................................................................CAATGCCTCTTGCACCACTAACTGCTTGGCTCCATTTGTGAAAGTCATGGATGAAGAACTTG.......................................................................................................................................................................................GAATTGTGAAGGGTACAATGACAACAACTCACTCTTACACCGGAGATCAG........................................................................................AGGCTTCTCGATGCTTCACACCGTGACTTAAGGAGAGCGAGAGCAGCAGCATTGAACATTGTCCCAACCAGTACTGGTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E740611" ref_strand="+" ref_description="SGN-E740611 [LC22AG06]">
      <seq>aaaaaccatggcttctcatgcagctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgacattgttatcgagggaaccggtgtgttcgttgatggtccgggtgctgggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgatattcctacatatgttgttggagtgaatgaacaagactactctcacgaggttgccaatatcgtaagcaatgcctcttgcaccaccaactgcttggccccttttgcnaaaatcctggatgaagaatttggtattgttaagggaactatgacaacaactcactcttacaccggagatcagaggcttctggatgcatcacaccgtgacttgaggagagcgagagctgcagcattgaacattgtcccgaccagcactggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5683" stop="2606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5383" g_stop="5278" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="214" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="379" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4106" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="547" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4105" i_stop="3719" i_length="387">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3718" g_stop="3558" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="708" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3557" i_stop="3367" i_length="191">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3366" g_stop="3305" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="770" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3304" i_stop="3122" i_length="183">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3121" g_stop="3072" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="771" r_stop="820" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="3071" i_stop="2984" i_length="88">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2983" g_stop="2906" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="821" r_stop="898" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E740611" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>898</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5383" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4106"/>
          <exon e_start="3718" e_stop="3558"/>
          <exon e_start="3366" e_stop="3305"/>
          <exon e_start="3121" e_stop="3072"/>
          <exon e_start="2983" e_stop="2906"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCATGGCTTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAGGTAAACTACGCGTTAATAGCATTTTTGATCCCTCGGTTATTGGTAGATTCTACTTTTAGTACTCGTAATATCTAAGCCGAGGGTCTATCAGAAACAGTCTCTCTGCCTTCACAAGGTCCCTTGACCTTTCATGCTAATATACATAACTAACGTAGCGAATGTCATAATTCATCCTATCATAACATTTGACTGATGCATACCTATGTTGCTCGGACCCTTCAAAAATGTTGTCAGATATGTGCCTGATTCTCCAAAAGTTACTCATTATTTGCTTAACGAGATAAAATCAACGAGATTGATCAATACAAGTCCAGCACTTTCAACATGATGAATCCTGAGAAAAGATGCTGATTAAATTACCTAATAATGTTGTTCGAAAACTTACAGGGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAGGTCAGTGCAATTTATGTGAACGTGTTTGACTGGACACATAGTTTAAAAAAATAAAGCAAGATTTTTGAAAAAAAGGATCATTCTTTTGTGAACGGACTAAAAATGAAATTGTGTCACATAAATTTGGACGGAGGGAGTATATTTAATGTTCAAGAAGACATTGAAGTAATGTTCTACCTTTGTAAATGCAGCAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTGGTAAGCAGAAGATTAATACTGTTCAAATTTATGTGGTTTTAAATGTTCGATTATTTATATCATCGGAAACAGACTCTCTACCTTCACAAATTAGGGGTAAGGCTGTGTACGCACCACCTTCCCAGATCTCACTTGTAGGATTACACTGCGTATGTTGTTTGACTATTTTCATTCACTTTGTAGGTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAGGTAATCATGATATACGATACAACAGGGGAATTTGTGAAAACGTGCACCTTACAGTGACGCTGAATGGATTTGATTATGTTGTATGCAGAGGCTTCTGGATGCATCACACCGTGACTTGAGGAGAGCGAGAGCTGCAGCATTGAACATTGTCCCGACCAGCACTGGT</genome_strand>
        <mrna_strand>AAAAACCATGGCTTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................GGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAG...............................................................................................................................................................................................CAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCNAAAATCCTGGATGAAGAATTTG.......................................................................................................................................................................................GTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAG........................................................................................AGGCTTCTGGATGCATCACACCGTGACTTGAGGAGAGCGAGAGCTGCAGCATTGAACATTGTCCCGACCAGCACTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E299436" ref_strand="+" ref_description="SGN-E299436 [cLET-43-H1]">
      <seq>tgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgacattgttatcgagggaaccggtgtgttcgttgatggtccgggtgctgggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgatattcctacatatgttgttggagtgaatgaacaagactactctcacgaggtggccaatatcgtaagcaatgcctcttgcaccaccaactgcttggccccttttgcaaaaatcctggatgaagaatttggtattgttaagggaactatgacaacaactcactcttacaccggagatcagaggcttctggatgcatcacaccgcgacttgaggagagcgagagctgcagcattgaacattgttccgaccagcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="4505" stop="2609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4205" g_stop="4106" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4105" i_stop="3719" i_length="387">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3718" g_stop="3558" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="261" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3557" i_stop="3367" i_length="191">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3366" g_stop="3305" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="323" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3304" i_stop="3122" i_length="183">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3121" g_stop="3072" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="373" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="3071" i_stop="2984" i_length="88">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="2983" g_stop="2909" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="448" r_length="75" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E299436" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E299436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4205" e_stop="4106"/>
          <exon e_start="3718" e_stop="3558"/>
          <exon e_start="3366" e_stop="3305"/>
          <exon e_start="3121" e_stop="3072"/>
          <exon e_start="2983" e_stop="2909"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAGGTAAACTACGCGTTAATAGCATTTTTGATCCCTCGGTTATTGGTAGATTCTACTTTTAGTACTCGTAATATCTAAGCCGAGGGTCTATCAGAAACAGTCTCTCTGCCTTCACAAGGTCCCTTGACCTTTCATGCTAATATACATAACTAACGTAGCGAATGTCATAATTCATCCTATCATAACATTTGACTGATGCATACCTATGTTGCTCGGACCCTTCAAAAATGTTGTCAGATATGTGCCTGATTCTCCAAAAGTTACTCATTATTTGCTTAACGAGATAAAATCAACGAGATTGATCAATACAAGTCCAGCACTTTCAACATGATGAATCCTGAGAAAAGATGCTGATTAAATTACCTAATAATGTTGTTCGAAAACTTACAGGGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAGGTCAGTGCAATTTATGTGAACGTGTTTGACTGGACACATAGTTTAAAAAAATAAAGCAAGATTTTTGAAAAAAAGGATCATTCTTTTGTGAACGGACTAAAAATGAAATTGTGTCACATAAATTTGGACGGAGGGAGTATATTTAATGTTCAAGAAGACATTGAAGTAATGTTCTACCTTTGTAAATGCAGCAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTGGTAAGCAGAAGATTAATACTGTTCAAATTTATGTGGTTTTAAATGTTCGATTATTTATATCATCGGAAACAGACTCTCTACCTTCACAAATTAGGGGTAAGGCTGTGTACGCACCACCTTCCCAGATCTCACTTGTAGGATTACACTGCGTATGTTGTTTGACTATTTTCATTCACTTTGTAGGTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAGGTAATCATGATATACGATACAACAGGGGAATTTGTGAAAACGTGCACCTTACAGTGACGCTGAATGGATTTGATTATGTTGTATGCAGAGGCTTCTGGATGCATCACACCGTGACTTGAGGAGAGCGAGAGCTGCAGCATTGAACATTGTCCCGACCAGCACT</genome_strand>
        <mrna_strand>TGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................GGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTGGCCAATATCGTAAG...............................................................................................................................................................................................CAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTG.......................................................................................................................................................................................GTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAG........................................................................................AGGCTTCTGGATGCATCACACCGCGACTTGAGGAGAGCGAGAGCTGCAGCATTGAACATTGTTCCGACCAGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E740151" ref_strand="+" ref_description="SGN-E740151 [LC20BB12]">
      <seq>ctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacatgatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgacattgttatcgagggaaccggtgtgttcgttgatggtccgggtgctgggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgatattcctacatatgttgttggagtgaatgaacaagactactctcacgaggttgccaatatcgtaagcaatgcctcttgcaccaccaactgcttggccccttttgcaaaaatcctggatgaagaatttggtattgttaagggaactatgacaacaactcactcttacaccggagatcagaggcttctggatgcatcacaccgtgacttgaggagagcgagagctgcagcattgaacattgtcccgaccagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5660" stop="2611"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5360" g_stop="5278" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="191" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="356" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4106" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="524" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4105" i_stop="3719" i_length="387">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3718" g_stop="3558" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="685" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3557" i_stop="3367" i_length="191">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3366" g_stop="3305" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="747" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3304" i_stop="3122" i_length="183">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3121" g_stop="3072" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="748" r_stop="797" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="3071" i_stop="2984" i_length="88">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2983" g_stop="2911" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="798" r_stop="870" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E740151" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>870</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E740151" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5360" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4106"/>
          <exon e_start="3718" e_stop="3558"/>
          <exon e_start="3366" e_stop="3305"/>
          <exon e_start="3121" e_stop="3072"/>
          <exon e_start="2983" e_stop="2911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAGGTAAACTACGCGTTAATAGCATTTTTGATCCCTCGGTTATTGGTAGATTCTACTTTTAGTACTCGTAATATCTAAGCCGAGGGTCTATCAGAAACAGTCTCTCTGCCTTCACAAGGTCCCTTGACCTTTCATGCTAATATACATAACTAACGTAGCGAATGTCATAATTCATCCTATCATAACATTTGACTGATGCATACCTATGTTGCTCGGACCCTTCAAAAATGTTGTCAGATATGTGCCTGATTCTCCAAAAGTTACTCATTATTTGCTTAACGAGATAAAATCAACGAGATTGATCAATACAAGTCCAGCACTTTCAACATGATGAATCCTGAGAAAAGATGCTGATTAAATTACCTAATAATGTTGTTCGAAAACTTACAGGGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAGGTCAGTGCAATTTATGTGAACGTGTTTGACTGGACACATAGTTTAAAAAAATAAAGCAAGATTTTTGAAAAAAAGGATCATTCTTTTGTGAACGGACTAAAAATGAAATTGTGTCACATAAATTTGGACGGAGGGAGTATATTTAATGTTCAAGAAGACATTGAAGTAATGTTCTACCTTTGTAAATGCAGCAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTGGTAAGCAGAAGATTAATACTGTTCAAATTTATGTGGTTTTAAATGTTCGATTATTTATATCATCGGAAACAGACTCTCTACCTTCACAAATTAGGGGTAAGGCTGTGTACGCACCACCTTCCCAGATCTCACTTGTAGGATTACACTGCGTATGTTGTTTGACTATTTTCATTCACTTTGTAGGTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAGGTAATCATGATATACGATACAACAGGGGAATTTGTGAAAACGTGCACCTTACAGTGACGCTGAATGGATTTGATTATGTTGTATGCAGAGGCTTCTGGATGCATCACACCGTGACTTGAGGAGAGCGAGAGCTGCAGCATTGAACATTGTCCCGACCAGCA</genome_strand>
        <mrna_strand>CTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACATGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................GGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAG...............................................................................................................................................................................................CAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTG.......................................................................................................................................................................................GTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAG........................................................................................AGGCTTCTGGATGCATCACACCGTGACTTGAGGAGAGCGAGAGCTGCAGCATTGAACATTGTCCCGACCAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E737903" ref_strand="+" ref_description="SGN-E737903 [LC11CF05]">
      <seq>ctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacatgatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgacattgttatcgagggaaccggtgtgttcgttgatggtccgggtgctgggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgatattcctacatatgttgttggagtgaatgaacaagactactctcacgaggttgccaatatcgtaagcaatgcctcttgcaccaccaactgcttggccccttttgcaaaaatcctggatgaagaatttggtattgttaagggaactatgacaacaactcactcttacaccggagatcagaggcttctggatgcatcacaccgttgacttgaggagagcgagagctgcaccattgaaccttgtcccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5660" stop="2617"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5360" g_stop="5278" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="191" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="356" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4106" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="524" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4105" i_stop="3719" i_length="387">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3718" g_stop="3558" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="685" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3557" i_stop="3367" i_length="191">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3366" g_stop="3305" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="686" r_stop="747" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3304" i_stop="3122" i_length="183">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3121" g_stop="3072" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="748" r_stop="797" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="3071" i_stop="2984" i_length="88">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2983" g_stop="2917" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="798" r_stop="865" r_length="68" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E737903" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>864</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5360" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4106"/>
          <exon e_start="3718" e_stop="3558"/>
          <exon e_start="3366" e_stop="3305"/>
          <exon e_start="3121" e_stop="3072"/>
          <exon e_start="2983" e_stop="2917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAGGTAAACTACGCGTTAATAGCATTTTTGATCCCTCGGTTATTGGTAGATTCTACTTTTAGTACTCGTAATATCTAAGCCGAGGGTCTATCAGAAACAGTCTCTCTGCCTTCACAAGGTCCCTTGACCTTTCATGCTAATATACATAACTAACGTAGCGAATGTCATAATTCATCCTATCATAACATTTGACTGATGCATACCTATGTTGCTCGGACCCTTCAAAAATGTTGTCAGATATGTGCCTGATTCTCCAAAAGTTACTCATTATTTGCTTAACGAGATAAAATCAACGAGATTGATCAATACAAGTCCAGCACTTTCAACATGATGAATCCTGAGAAAAGATGCTGATTAAATTACCTAATAATGTTGTTCGAAAACTTACAGGGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAGGTCAGTGCAATTTATGTGAACGTGTTTGACTGGACACATAGTTTAAAAAAATAAAGCAAGATTTTTGAAAAAAAGGATCATTCTTTTGTGAACGGACTAAAAATGAAATTGTGTCACATAAATTTGGACGGAGGGAGTATATTTAATGTTCAAGAAGACATTGAAGTAATGTTCTACCTTTGTAAATGCAGCAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTGGTAAGCAGAAGATTAATACTGTTCAAATTTATGTGGTTTTAAATGTTCGATTATTTATATCATCGGAAACAGACTCTCTACCTTCACAAATTAGGGGTAAGGCTGTGTACGCACCACCTTCCCAGATCTCACTTGTAGGATTACACTGCGTATGTTGTTTGACTATTTTCATTCACTTTGTAGGTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAGGTAATCATGATATACGATACAACAGGGGAATTTGTGAAAACGTGCACCTTACAGTGACGCTGAATGGATTTGATTATGTTGTATGCAGAGGCTTCTGGATGCATCACACCG-TGACTTGAGGAGAGCGAGAGCTGCAGCATTGAACATTGTCCCGA</genome_strand>
        <mrna_strand>CTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACATGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................GGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAG...............................................................................................................................................................................................CAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTG.......................................................................................................................................................................................GTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAG........................................................................................AGGCTTCTGGATGCATCACACCGTTGACTTGAGGAGAGCGAGAGCTGCACCATTGAACCTTGTCCCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E731797" ref_strand="+" ref_description="SGN-E731797 [LA28AH05]">
      <seq>agaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgacattgttatcgagggaaccggtgtgttcgttgatggtccgggtgctgggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgatattcctacatatgttgttggagtgaatgaacaagactactctcacgaggttgccaatatcgtaagcaatgcctcttgcaccaccaactgcttggccccttttgcaaaaatcctggatgaagaatttggtattgttaagggaactatgacaacaactcactcttacaccggagatcagaggcttctggatgcatcacaccgtgacttgaggagagcgagagctgcagcattgaacattgtcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5646" stop="2618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5346" g_stop="5278" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="177" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="342" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4106" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="510" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4105" i_stop="3719" i_length="387">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3718" g_stop="3558" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="671" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3557" i_stop="3367" i_length="191">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3366" g_stop="3305" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="733" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3304" i_stop="3122" i_length="183">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3121" g_stop="3072" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="734" r_stop="783" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="3071" i_stop="2984" i_length="88">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2983" g_stop="2918" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="784" r_stop="849" r_length="66" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E731797" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>849</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5346" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4106"/>
          <exon e_start="3718" e_stop="3558"/>
          <exon e_start="3366" e_stop="3305"/>
          <exon e_start="3121" e_stop="3072"/>
          <exon e_start="2983" e_stop="2918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAGGTAAACTACGCGTTAATAGCATTTTTGATCCCTCGGTTATTGGTAGATTCTACTTTTAGTACTCGTAATATCTAAGCCGAGGGTCTATCAGAAACAGTCTCTCTGCCTTCACAAGGTCCCTTGACCTTTCATGCTAATATACATAACTAACGTAGCGAATGTCATAATTCATCCTATCATAACATTTGACTGATGCATACCTATGTTGCTCGGACCCTTCAAAAATGTTGTCAGATATGTGCCTGATTCTCCAAAAGTTACTCATTATTTGCTTAACGAGATAAAATCAACGAGATTGATCAATACAAGTCCAGCACTTTCAACATGATGAATCCTGAGAAAAGATGCTGATTAAATTACCTAATAATGTTGTTCGAAAACTTACAGGGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAGGTCAGTGCAATTTATGTGAACGTGTTTGACTGGACACATAGTTTAAAAAAATAAAGCAAGATTTTTGAAAAAAAGGATCATTCTTTTGTGAACGGACTAAAAATGAAATTGTGTCACATAAATTTGGACGGAGGGAGTATATTTAATGTTCAAGAAGACATTGAAGTAATGTTCTACCTTTGTAAATGCAGCAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTGGTAAGCAGAAGATTAATACTGTTCAAATTTATGTGGTTTTAAATGTTCGATTATTTATATCATCGGAAACAGACTCTCTACCTTCACAAATTAGGGGTAAGGCTGTGTACGCACCACCTTCCCAGATCTCACTTGTAGGATTACACTGCGTATGTTGTTTGACTATTTTCATTCACTTTGTAGGTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAGGTAATCATGATATACGATACAACAGGGGAATTTGTGAAAACGTGCACCTTACAGTGACGCTGAATGGATTTGATTATGTTGTATGCAGAGGCTTCTGGATGCATCACACCGTGACTTGAGGAGAGCGAGAGCTGCAGCATTGAACATTGTCCCG</genome_strand>
        <mrna_strand>AGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................GGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAG...............................................................................................................................................................................................CAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTG.......................................................................................................................................................................................GTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAG........................................................................................AGGCTTCTGGATGCATCACACCGTGACTTGAGGAGAGCGAGAGCTGCAGCATTGAACATTGTCCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E731253" ref_strand="+" ref_description="SGN-E731253 [LA26CD05]">
      <seq>caagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgacattgttatcgagggaaccggtgtgttcgttgatggtccgggtgctgggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgatattcctacatatgttgttggagtgaatgaacaagactactctcacgaggttgccaatatcgtaagcaatgcctcttgcaccaccaactgcttggccccttttgcaaaaatcctggatgaagaatttggtattgttaagggaactatgacaacaactcactcttacaccggagatcagaggcttctggatgcatcacaccgtgacttgangagagcgagagctgcagcattgaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5648" stop="2626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5348" g_stop="5278" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="179" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="344" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4106" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="512" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4105" i_stop="3719" i_length="387">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3718" g_stop="3558" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="513" r_stop="673" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3557" i_stop="3367" i_length="191">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3366" g_stop="3305" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="735" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3304" i_stop="3122" i_length="183">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3121" g_stop="3072" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="785" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="3071" i_stop="2984" i_length="88">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2983" g_stop="2926" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="786" r_stop="843" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E731253" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5348" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4106"/>
          <exon e_start="3718" e_stop="3558"/>
          <exon e_start="3366" e_stop="3305"/>
          <exon e_start="3121" e_stop="3072"/>
          <exon e_start="2983" e_stop="2926"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAGGTAAACTACGCGTTAATAGCATTTTTGATCCCTCGGTTATTGGTAGATTCTACTTTTAGTACTCGTAATATCTAAGCCGAGGGTCTATCAGAAACAGTCTCTCTGCCTTCACAAGGTCCCTTGACCTTTCATGCTAATATACATAACTAACGTAGCGAATGTCATAATTCATCCTATCATAACATTTGACTGATGCATACCTATGTTGCTCGGACCCTTCAAAAATGTTGTCAGATATGTGCCTGATTCTCCAAAAGTTACTCATTATTTGCTTAACGAGATAAAATCAACGAGATTGATCAATACAAGTCCAGCACTTTCAACATGATGAATCCTGAGAAAAGATGCTGATTAAATTACCTAATAATGTTGTTCGAAAACTTACAGGGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAGGTCAGTGCAATTTATGTGAACGTGTTTGACTGGACACATAGTTTAAAAAAATAAAGCAAGATTTTTGAAAAAAAGGATCATTCTTTTGTGAACGGACTAAAAATGAAATTGTGTCACATAAATTTGGACGGAGGGAGTATATTTAATGTTCAAGAAGACATTGAAGTAATGTTCTACCTTTGTAAATGCAGCAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTGGTAAGCAGAAGATTAATACTGTTCAAATTTATGTGGTTTTAAATGTTCGATTATTTATATCATCGGAAACAGACTCTCTACCTTCACAAATTAGGGGTAAGGCTGTGTACGCACCACCTTCCCAGATCTCACTTGTAGGATTACACTGCGTATGTTGTTTGACTATTTTCATTCACTTTGTAGGTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAGGTAATCATGATATACGATACAACAGGGGAATTTGTGAAAACGTGCACCTTACAGTGACGCTGAATGGATTTGATTATGTTGTATGCAGAGGCTTCTGGATGCATCACACCGTGACTTGAGGAGAGCGAGAGCTGCAGCATTGAACA</genome_strand>
        <mrna_strand>CAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................GGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAG...............................................................................................................................................................................................CAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTG.......................................................................................................................................................................................GTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAG........................................................................................AGGCTTCTGGATGCATCACACCGTGACTTGANGAGAGCGAGAGCTGCAGCATTGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E738842" ref_strand="+" ref_description="SGN-E738842 [LC15AF09]">
      <seq>ggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgacattgttatcgagggaaccggtgtgttcgttgatggtccgggtgctgggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgatattcctacatatgttgttggagtgaatgaacaagactactctcacgaggttgccaatatcgtaagcaatgcctcttgcaccaccaactgcttggccccttttgcaaaaatcctggatgaagaatttggtattgttaagggaactatgacaacaactcactcttacaccggagatcagaggcttctggatgcatcacaccgtgacttgaggagagcgagagctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5656" stop="2638"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5356" g_stop="5278" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="187" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="352" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4106" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="520" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4105" i_stop="3719" i_length="387">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3718" g_stop="3558" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="681" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3557" i_stop="3367" i_length="191">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3366" g_stop="3305" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="743" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3304" i_stop="3122" i_length="183">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3121" g_stop="3072" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="744" r_stop="793" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="3071" i_stop="2984" i_length="88">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2983" g_stop="2938" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="794" r_stop="839" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E738842" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>839</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5356" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4106"/>
          <exon e_start="3718" e_stop="3558"/>
          <exon e_start="3366" e_stop="3305"/>
          <exon e_start="3121" e_stop="3072"/>
          <exon e_start="2983" e_stop="2938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAGGTAAACTACGCGTTAATAGCATTTTTGATCCCTCGGTTATTGGTAGATTCTACTTTTAGTACTCGTAATATCTAAGCCGAGGGTCTATCAGAAACAGTCTCTCTGCCTTCACAAGGTCCCTTGACCTTTCATGCTAATATACATAACTAACGTAGCGAATGTCATAATTCATCCTATCATAACATTTGACTGATGCATACCTATGTTGCTCGGACCCTTCAAAAATGTTGTCAGATATGTGCCTGATTCTCCAAAAGTTACTCATTATTTGCTTAACGAGATAAAATCAACGAGATTGATCAATACAAGTCCAGCACTTTCAACATGATGAATCCTGAGAAAAGATGCTGATTAAATTACCTAATAATGTTGTTCGAAAACTTACAGGGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAGGTCAGTGCAATTTATGTGAACGTGTTTGACTGGACACATAGTTTAAAAAAATAAAGCAAGATTTTTGAAAAAAAGGATCATTCTTTTGTGAACGGACTAAAAATGAAATTGTGTCACATAAATTTGGACGGAGGGAGTATATTTAATGTTCAAGAAGACATTGAAGTAATGTTCTACCTTTGTAAATGCAGCAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTGGTAAGCAGAAGATTAATACTGTTCAAATTTATGTGGTTTTAAATGTTCGATTATTTATATCATCGGAAACAGACTCTCTACCTTCACAAATTAGGGGTAAGGCTGTGTACGCACCACCTTCCCAGATCTCACTTGTAGGATTACACTGCGTATGTTGTTTGACTATTTTCATTCACTTTGTAGGTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAGGTAATCATGATATACGATACAACAGGGGAATTTGTGAAAACGTGCACCTTACAGTGACGCTGAATGGATTTGATTATGTTGTATGCAGAGGCTTCTGGATGCATCACACCGTGACTTGAGGAGAGCGAGAGCTG</genome_strand>
        <mrna_strand>GGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................GGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAG...............................................................................................................................................................................................CAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTG.......................................................................................................................................................................................GTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAG........................................................................................AGGCTTCTGGATGCATCACACCGTGACTTGAGGAGAGCGAGAGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E736233" ref_strand="+" ref_description="SGN-E736233 [LC04DE02]">
      <seq>aaaaaccatggcttctcatgcagctttggctccttggggagtccctacaagcacaaggcttctatcaaagaactcttaatctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtctgcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgacattgttatcgagggaaccggtgtgttcgttgatggtccgggtgctgggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgatattcctacatatgttgttggagtgaatgaacaagactactctcacgaagttgccaatatcgtaagcaatgcctcttgcaccaccaactgcttggccccttttgcaaaaatcctggatgaagaatttggtattgttaagggaactatgacaacaactcactcttacaccggagatcagaggcttctggatgcatcacaccgtgacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5683" stop="2653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5383" g_stop="5278" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="214" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="379" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4106" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="547" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4105" i_stop="3719" i_length="387">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3718" g_stop="3558" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="708" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3557" i_stop="3367" i_length="191">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3366" g_stop="3305" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="709" r_stop="770" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3304" i_stop="3122" i_length="183">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3121" g_stop="3072" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="771" r_stop="820" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="3071" i_stop="2984" i_length="88">
            <donor d_prob="0.924" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2983" g_stop="2953" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="821" r_stop="851" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E736233" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>851</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5383" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4106"/>
          <exon e_start="3718" e_stop="3558"/>
          <exon e_start="3366" e_stop="3305"/>
          <exon e_start="3121" e_stop="3072"/>
          <exon e_start="2983" e_stop="2953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCATGGCTTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAGGTAAACTACGCGTTAATAGCATTTTTGATCCCTCGGTTATTGGTAGATTCTACTTTTAGTACTCGTAATATCTAAGCCGAGGGTCTATCAGAAACAGTCTCTCTGCCTTCACAAGGTCCCTTGACCTTTCATGCTAATATACATAACTAACGTAGCGAATGTCATAATTCATCCTATCATAACATTTGACTGATGCATACCTATGTTGCTCGGACCCTTCAAAAATGTTGTCAGATATGTGCCTGATTCTCCAAAAGTTACTCATTATTTGCTTAACGAGATAAAATCAACGAGATTGATCAATACAAGTCCAGCACTTTCAACATGATGAATCCTGAGAAAAGATGCTGATTAAATTACCTAATAATGTTGTTCGAAAACTTACAGGGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAGGTCAGTGCAATTTATGTGAACGTGTTTGACTGGACACATAGTTTAAAAAAATAAAGCAAGATTTTTGAAAAAAAGGATCATTCTTTTGTGAACGGACTAAAAATGAAATTGTGTCACATAAATTTGGACGGAGGGAGTATATTTAATGTTCAAGAAGACATTGAAGTAATGTTCTACCTTTGTAAATGCAGCAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTGGTAAGCAGAAGATTAATACTGTTCAAATTTATGTGGTTTTAAATGTTCGATTATTTATATCATCGGAAACAGACTCTCTACCTTCACAAATTAGGGGTAAGGCTGTGTACGCACCACCTTCCCAGATCTCACTTGTAGGATTACACTGCGTATGTTGTTTGACTATTTTCATTCACTTTGTAGGTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAGGTAATCATGATATACGATACAACAGGGGAATTTGTGAAAACGTGCACCTTACAGTGACGCTGAATGGATTTGATTATGTTGTATGCAGAGGCTTCTGGATGCATCACACCGTGACTTGA</genome_strand>
        <mrna_strand>AAAAACCATGGCTTCTCATGCAGCTTTGGCTCCTTGGGGAGTCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTAATCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTGCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................GGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAAGTTGCCAATATCGTAAG...............................................................................................................................................................................................CAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTG.......................................................................................................................................................................................GTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAG........................................................................................AGGCTTCTGGATGCATCACACCGTGACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E735885" ref_strand="+" ref_description="SGN-E735885 [LC03CB06]">
      <seq>gtagctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgacattgttatcgagggaaccggtgtgttcgttgatggtccgggtgctgggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgatattcctacatatgttgttggagtgaatgaacaagactactctcacgaggttgccaatatcgtaagcaatgcctcttgcaccaccaactgcttggccccttttgcaaaaatcctggatgaagaatttggtattgttaagggaactatgacaacaactcactcttacaccggagatcaaaggcttctggatgcatcacaccgtgacttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5664" stop="2653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5364" g_stop="5278" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="195" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="360" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4106" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="528" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4105" i_stop="3719" i_length="387">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3718" g_stop="3558" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="689" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3557" i_stop="3367" i_length="191">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3366" g_stop="3305" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="751" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3304" i_stop="3122" i_length="183">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3121" g_stop="3072" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="752" r_stop="801" r_length="50" r_score="0.980"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="3071" i_stop="2984" i_length="88">
            <donor d_prob="0.924" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="2983" g_stop="2953" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="802" r_stop="832" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E735885" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5364" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4106"/>
          <exon e_start="3718" e_stop="3558"/>
          <exon e_start="3366" e_stop="3305"/>
          <exon e_start="3121" e_stop="3072"/>
          <exon e_start="2983" e_stop="2953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAGGTAAACTACGCGTTAATAGCATTTTTGATCCCTCGGTTATTGGTAGATTCTACTTTTAGTACTCGTAATATCTAAGCCGAGGGTCTATCAGAAACAGTCTCTCTGCCTTCACAAGGTCCCTTGACCTTTCATGCTAATATACATAACTAACGTAGCGAATGTCATAATTCATCCTATCATAACATTTGACTGATGCATACCTATGTTGCTCGGACCCTTCAAAAATGTTGTCAGATATGTGCCTGATTCTCCAAAAGTTACTCATTATTTGCTTAACGAGATAAAATCAACGAGATTGATCAATACAAGTCCAGCACTTTCAACATGATGAATCCTGAGAAAAGATGCTGATTAAATTACCTAATAATGTTGTTCGAAAACTTACAGGGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAGGTCAGTGCAATTTATGTGAACGTGTTTGACTGGACACATAGTTTAAAAAAATAAAGCAAGATTTTTGAAAAAAAGGATCATTCTTTTGTGAACGGACTAAAAATGAAATTGTGTCACATAAATTTGGACGGAGGGAGTATATTTAATGTTCAAGAAGACATTGAAGTAATGTTCTACCTTTGTAAATGCAGCAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTGGTAAGCAGAAGATTAATACTGTTCAAATTTATGTGGTTTTAAATGTTCGATTATTTATATCATCGGAAACAGACTCTCTACCTTCACAAATTAGGGGTAAGGCTGTGTACGCACCACCTTCCCAGATCTCACTTGTAGGATTACACTGCGTATGTTGTTTGACTATTTTCATTCACTTTGTAGGTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAGGTAATCATGATATACGATACAACAGGGGAATTTGTGAAAACGTGCACCTTACAGTGACGCTGAATGGATTTGATTATGTTGTATGCAGAGGCTTCTGGATGCATCACACCGTGACTTGA</genome_strand>
        <mrna_strand>GTAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................GGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAG...............................................................................................................................................................................................CAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTG.......................................................................................................................................................................................GTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAA........................................................................................AGGCTTCTGGATGCATCACACCGTGACTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E281051" ref_strand="+" ref_description="SGN-E281051 [cLER-7-L6]">
      <seq>gtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgacattgttatcgaaggaaccggtgtgttcgttgatggtccgggtgctgggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgatattcctacatatgttgttggagtgaatgaacaagactactctcacgaggttgccaatatcgtaagcaatgcctcttgcaccaccaactgcttggccccttttgcaaaaatcctggatgaagaatttggtattgttaagggaactatgacaacaactcactcttacaccggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="4513" stop="2776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4213" g_stop="4106" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="108" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4105" i_stop="3719" i_length="387">
            <donor d_prob="0.986" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="3718" g_stop="3558" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="269" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="3557" i_stop="3367" i_length="191">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3366" g_stop="3305" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="331" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="3304" i_stop="3122" i_length="183">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="3121" g_stop="3076" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="377" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E281051" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281051" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4213" e_stop="4106"/>
          <exon e_start="3718" e_stop="3558"/>
          <exon e_start="3366" e_stop="3305"/>
          <exon e_start="3121" e_stop="3076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAGGTAAACTACGCGTTAATAGCATTTTTGATCCCTCGGTTATTGGTAGATTCTACTTTTAGTACTCGTAATATCTAAGCCGAGGGTCTATCAGAAACAGTCTCTCTGCCTTCACAAGGTCCCTTGACCTTTCATGCTAATATACATAACTAACGTAGCGAATGTCATAATTCATCCTATCATAACATTTGACTGATGCATACCTATGTTGCTCGGACCCTTCAAAAATGTTGTCAGATATGTGCCTGATTCTCCAAAAGTTACTCATTATTTGCTTAACGAGATAAAATCAACGAGATTGATCAATACAAGTCCAGCACTTTCAACATGATGAATCCTGAGAAAAGATGCTGATTAAATTACCTAATAATGTTGTTCGAAAACTTACAGGGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAGGTCAGTGCAATTTATGTGAACGTGTTTGACTGGACACATAGTTTAAAAAAATAAAGCAAGATTTTTGAAAAAAAGGATCATTCTTTTGTGAACGGACTAAAAATGAAATTGTGTCACATAAATTTGGACGGAGGGAGTATATTTAATGTTCAAGAAGACATTGAAGTAATGTTCTACCTTTGTAAATGCAGCAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTGGTAAGCAGAAGATTAATACTGTTCAAATTTATGTGGTTTTAAATGTTCGATTATTTATATCATCGGAAACAGACTCTCTACCTTCACAAATTAGGGGTAAGGCTGTGTACGCACCACCTTCCCAGATCTCACTTGTAGGATTACACTGCGTATGTTGTTTGACTATTTTCATTCACTTTGTAGGTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGA</genome_strand>
        <mrna_strand>GTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAA...................................................................................................................................................................................................................................................................................................................................................................................................GGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAG...............................................................................................................................................................................................CAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTG.......................................................................................................................................................................................GTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E736153" ref_strand="+" ref_description="SGN-E736153 [LC04CC01]">
      <seq>tggcttctcatgcagctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgacattgttatcgagggaaccggtgtgttcgttgatggtccgggtgctgggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgatattcctacatatgttgttggagtgaatgaacaagactactctcacgaggttgccaatatcgtaagcaatgcctcttgcaccaccaactgcttggccccttttgcaaaaatcctggatgaagaatttggtattgttaagggaactatgacaacaactcactcttacaccgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5675" stop="2779"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5375" g_stop="5278" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="206" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="371" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4106" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="539" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4105" i_stop="3719" i_length="387">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3718" g_stop="3558" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="540" r_stop="700" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3557" i_stop="3367" i_length="191">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3366" g_stop="3305" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="762" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3304" i_stop="3122" i_length="183">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3121" g_stop="3079" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="763" r_stop="805" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E736153" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E736153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5375" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4106"/>
          <exon e_start="3718" e_stop="3558"/>
          <exon e_start="3366" e_stop="3305"/>
          <exon e_start="3121" e_stop="3079"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCTTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAGGTAAACTACGCGTTAATAGCATTTTTGATCCCTCGGTTATTGGTAGATTCTACTTTTAGTACTCGTAATATCTAAGCCGAGGGTCTATCAGAAACAGTCTCTCTGCCTTCACAAGGTCCCTTGACCTTTCATGCTAATATACATAACTAACGTAGCGAATGTCATAATTCATCCTATCATAACATTTGACTGATGCATACCTATGTTGCTCGGACCCTTCAAAAATGTTGTCAGATATGTGCCTGATTCTCCAAAAGTTACTCATTATTTGCTTAACGAGATAAAATCAACGAGATTGATCAATACAAGTCCAGCACTTTCAACATGATGAATCCTGAGAAAAGATGCTGATTAAATTACCTAATAATGTTGTTCGAAAACTTACAGGGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAGGTCAGTGCAATTTATGTGAACGTGTTTGACTGGACACATAGTTTAAAAAAATAAAGCAAGATTTTTGAAAAAAAGGATCATTCTTTTGTGAACGGACTAAAAATGAAATTGTGTCACATAAATTTGGACGGAGGGAGTATATTTAATGTTCAAGAAGACATTGAAGTAATGTTCTACCTTTGTAAATGCAGCAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTGGTAAGCAGAAGATTAATACTGTTCAAATTTATGTGGTTTTAAATGTTCGATTATTTATATCATCGGAAACAGACTCTCTACCTTCACAAATTAGGGGTAAGGCTGTGTACGCACCACCTTCCCAGATCTCACTTGTAGGATTACACTGCGTATGTTGTTTGACTATTTTCATTCACTTTGTAGGTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGG</genome_strand>
        <mrna_strand>TGGCTTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................GGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAG...............................................................................................................................................................................................CAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTG.......................................................................................................................................................................................GTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E738827" ref_strand="+" ref_description="SGN-E738827 [LC15AD12]">
      <seq>cactttggcttctcatgcagctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgacattgttatcgagggaaccggtgtgttcgttgatggtccgggtgctgggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgatattcctacatatgttgttggagtgaatgaacaagactactctcacgaggttgccaatatcgtaagcaatgcctcttgcaccaccaactgcttggccccttttgcaaaaatcctggatgaagaatttggtattgttaagggaactatgacaacaactcactcttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5679" stop="2784"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5380" g_stop="5278" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="211" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="376" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4106" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="544" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4105" i_stop="3719" i_length="387">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3718" g_stop="3558" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="705" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3557" i_stop="3367" i_length="191">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3366" g_stop="3305" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="706" r_stop="767" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="3304" i_stop="3122" i_length="183">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="3121" g_stop="3084" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="768" r_stop="805" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E738827" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>805</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E738827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5380" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4106"/>
          <exon e_start="3718" e_stop="3558"/>
          <exon e_start="3366" e_stop="3305"/>
          <exon e_start="3121" e_stop="3084"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCATGGCTTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAGGTAAACTACGCGTTAATAGCATTTTTGATCCCTCGGTTATTGGTAGATTCTACTTTTAGTACTCGTAATATCTAAGCCGAGGGTCTATCAGAAACAGTCTCTCTGCCTTCACAAGGTCCCTTGACCTTTCATGCTAATATACATAACTAACGTAGCGAATGTCATAATTCATCCTATCATAACATTTGACTGATGCATACCTATGTTGCTCGGACCCTTCAAAAATGTTGTCAGATATGTGCCTGATTCTCCAAAAGTTACTCATTATTTGCTTAACGAGATAAAATCAACGAGATTGATCAATACAAGTCCAGCACTTTCAACATGATGAATCCTGAGAAAAGATGCTGATTAAATTACCTAATAATGTTGTTCGAAAACTTACAGGGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAGGTCAGTGCAATTTATGTGAACGTGTTTGACTGGACACATAGTTTAAAAAAATAAAGCAAGATTTTTGAAAAAAAGGATCATTCTTTTGTGAACGGACTAAAAATGAAATTGTGTCACATAAATTTGGACGGAGGGAGTATATTTAATGTTCAAGAAGACATTGAAGTAATGTTCTACCTTTGTAAATGCAGCAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTGGTAAGCAGAAGATTAATACTGTTCAAATTTATGTGGTTTTAAATGTTCGATTATTTATATCATCGGAAACAGACTCTCTACCTTCACAAATTAGGGGTAAGGCTGTGTACGCACCACCTTCCCAGATCTCACTTGTAGGATTACACTGCGTATGTTGTTTGACTATTTTCATTCACTTTGTAGGTATTGTTAAGGGAACTATGACAACAACTCACTCTTAC</genome_strand>
        <mrna_strand>CACTTTGGCTTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................GGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAG...............................................................................................................................................................................................CAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTG.......................................................................................................................................................................................GTATTGTTAAGGGAACTATGACAACAACTCACTCTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E339195" ref_strand="+" ref_description="SGN-E339195 [cTOF-4-C15]">
      <seq>cagctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgacattgttatcgagggaaccggtgtgttcgttgatggtccgggtgctgggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgatattcctacatatgttgtttggagtgaatgaacaagactactctcacgaggttgccaatatcgtaagcaatgcctcttgcaccaccaactgcttggccccttttgcaaaatcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5663" stop="3019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5363" g_stop="5278" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="194" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="359" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4106" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="527" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4105" i_stop="3719" i_length="387">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3718" g_stop="3558" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="528" r_stop="689" r_length="162" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3557" i_stop="3367" i_length="191">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3366" g_stop="3319" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="736" r_length="47" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E339195" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339195" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5363" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4106"/>
          <exon e_start="3718" e_stop="3558"/>
          <exon e_start="3366" e_stop="3319"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAGGTAAACTACGCGTTAATAGCATTTTTGATCCCTCGGTTATTGGTAGATTCTACTTTTAGTACTCGTAATATCTAAGCCGAGGGTCTATCAGAAACAGTCTCTCTGCCTTCACAAGGTCCCTTGACCTTTCATGCTAATATACATAACTAACGTAGCGAATGTCATAATTCATCCTATCATAACATTTGACTGATGCATACCTATGTTGCTCGGACCCTTCAAAAATGTTGTCAGATATGTGCCTGATTCTCCAAAAGTTACTCATTATTTGCTTAACGAGATAAAATCAACGAGATTGATCAATACAAGTCCAGCACTTTCAACATGATGAATCCTGAGAAAAGATGCTGATTAAATTACCTAATAATGTTGTTCGAAAACTTACAGGGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTG-TTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAGGTCAGTGCAATTTATGTGAACGTGTTTGACTGGACACATAGTTTAAAAAAATAAAGCAAGATTTTTGAAAAAAAGGATCATTCTTTTGTGAACGGACTAAAAATGAAATTGTGTCACATAAATTTGGACGGAGGGAGTATATTTAATGTTCAAGAAGACATTGAAGTAATGTTCTACCTTTGTAAATGCAGCAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCT</genome_strand>
        <mrna_strand>CAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................GGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAG...............................................................................................................................................................................................CAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGC-AAAATCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E735970" ref_strand="+" ref_description="SGN-E735970 [LC03DE06]">
      <seq>ggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgacattgttatcgagggaaccggtgtgttcgttgatggtccgggtgctgggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgatattcctacatatgttgttggagtgaatgaacaagactactctcacgaggttgcccatatcgtaagcaatgcctcttgcaccaccaactgcttggccccttttgcaaaaatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5656" stop="3020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5356" g_stop="5278" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="187" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="352" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4106" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="520" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4105" i_stop="3719" i_length="387">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3718" g_stop="3558" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="521" r_stop="681" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3557" i_stop="3367" i_length="191">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3366" g_stop="3320" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="682" r_stop="728" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E735970" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E735970" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5356" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4106"/>
          <exon e_start="3718" e_stop="3558"/>
          <exon e_start="3366" e_stop="3320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAGGTAAACTACGCGTTAATAGCATTTTTGATCCCTCGGTTATTGGTAGATTCTACTTTTAGTACTCGTAATATCTAAGCCGAGGGTCTATCAGAAACAGTCTCTCTGCCTTCACAAGGTCCCTTGACCTTTCATGCTAATATACATAACTAACGTAGCGAATGTCATAATTCATCCTATCATAACATTTGACTGATGCATACCTATGTTGCTCGGACCCTTCAAAAATGTTGTCAGATATGTGCCTGATTCTCCAAAAGTTACTCATTATTTGCTTAACGAGATAAAATCAACGAGATTGATCAATACAAGTCCAGCACTTTCAACATGATGAATCCTGAGAAAAGATGCTGATTAAATTACCTAATAATGTTGTTCGAAAACTTACAGGGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAGGTCAGTGCAATTTATGTGAACGTGTTTGACTGGACACATAGTTTAAAAAAATAAAGCAAGATTTTTGAAAAAAAGGATCATTCTTTTGTGAACGGACTAAAAATGAAATTGTGTCACATAAATTTGGACGGAGGGAGTATATTTAATGTTCAAGAAGACATTGAAGTAATGTTCTACCTTTGTAAATGCAGCAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCC</genome_strand>
        <mrna_strand>GGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................GGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCCATATCGTAAG...............................................................................................................................................................................................CAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E737764" ref_strand="+" ref_description="SGN-E737764 [LC11AF05]">
      <seq>cggcacgaggctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacatgatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgacattgttatcgagggaaccggtgtgttcgttgatggtccgggtgctgggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgatattcctacatatgttgttggagtgaatgaacaagactactctcacgaggttgccaatatcgtaagcaatgcctcttgcaccaccaactgcttggccccttttgcaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5667" stop="3024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5360" g_stop="5278" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="11" r_stop="93" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="201" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="366" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4106" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="534" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4105" i_stop="3719" i_length="387">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3718" g_stop="3558" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="695" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3557" i_stop="3367" i_length="191">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3366" g_stop="3324" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="696" r_stop="738" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E737764" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E737764" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5360" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4106"/>
          <exon e_start="3718" e_stop="3558"/>
          <exon e_start="3366" e_stop="3324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAGGTAAACTACGCGTTAATAGCATTTTTGATCCCTCGGTTATTGGTAGATTCTACTTTTAGTACTCGTAATATCTAAGCCGAGGGTCTATCAGAAACAGTCTCTCTGCCTTCACAAGGTCCCTTGACCTTTCATGCTAATATACATAACTAACGTAGCGAATGTCATAATTCATCCTATCATAACATTTGACTGATGCATACCTATGTTGCTCGGACCCTTCAAAAATGTTGTCAGATATGTGCCTGATTCTCCAAAAGTTACTCATTATTTGCTTAACGAGATAAAATCAACGAGATTGATCAATACAAGTCCAGCACTTTCAACATGATGAATCCTGAGAAAAGATGCTGATTAAATTACCTAATAATGTTGTTCGAAAACTTACAGGGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAGGTCAGTGCAATTTATGTGAACGTGTTTGACTGGACACATAGTTTAAAAAAATAAAGCAAGATTTTTGAAAAAAAGGATCATTCTTTTGTGAACGGACTAAAAATGAAATTGTGTCACATAAATTTGGACGGAGGGAGTATATTTAATGTTCAAGAAGACATTGAAGTAATGTTCTACCTTTGTAAATGCAGCAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAA</genome_strand>
        <mrna_strand>CTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACATGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................GGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAG...............................................................................................................................................................................................CAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E709759" ref_strand="+" ref_description="SGN-E709759 [FA53AB08]">
      <seq>tttggctccttcaagaatcccccctagcacatggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcacagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgacattgttatcgagggaaccggtgtgttcgttgatggtccgggtgctgggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgatattcctacatatgttgttggagtgaatgaacaagactactctcaccaggttgccaatatcgtaagcaatgcctcttgcaccaccaactgcttggccccttttgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5659" stop="3025"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5359" g_stop="5278" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="190" r_length="108" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="355" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4106" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="523" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4105" i_stop="3719" i_length="387">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3718" g_stop="3558" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="524" r_stop="684" r_length="161" r_score="0.994"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3557" i_stop="3367" i_length="191">
            <donor d_prob="0.981" d_score="0.98"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3366" g_stop="3325" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="685" r_stop="726" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E709759" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>726</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5359" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4106"/>
          <exon e_start="3718" e_stop="3558"/>
          <exon e_start="3366" e_stop="3325"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAGGTAAACTACGCGTTAATAGCATTTTTGATCCCTCGGTTATTGGTAGATTCTACTTTTAGTACTCGTAATATCTAAGCCGAGGGTCTATCAGAAACAGTCTCTCTGCCTTCACAAGGTCCCTTGACCTTTCATGCTAATATACATAACTAACGTAGCGAATGTCATAATTCATCCTATCATAACATTTGACTGATGCATACCTATGTTGCTCGGACCCTTCAAAAATGTTGTCAGATATGTGCCTGATTCTCCAAAAGTTACTCATTATTTGCTTAACGAGATAAAATCAACGAGATTGATCAATACAAGTCCAGCACTTTCAACATGATGAATCCTGAGAAAAGATGCTGATTAAATTACCTAATAATGTTGTTCGAAAACTTACAGGGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAGGTCAGTGCAATTTATGTGAACGTGTTTGACTGGACACATAGTTTAAAAAAATAAAGCAAGATTTTTGAAAAAAAGGATCATTCTTTTGTGAACGGACTAAAAATGAAATTGTGTCACATAAATTTGGACGGAGGGAGTATATTTAATGTTCAAGAAGACATTGAAGTAATGTTCTACCTTTGTAAATGCAGCAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAA</genome_strand>
        <mrna_strand>TTTGGCTCCTTCAAGAATCCCCCCTAGCACATGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCACAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................GGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACCAGGTTGCCAATATCGTAAG...............................................................................................................................................................................................CAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E345992" ref_strand="+" ref_description="SGN-E345992 [cTOF-24-I7]">
      <seq>tgcagctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgnacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgacattgttatcgagggaaccggtgtgttcgttgatggtcccgggtgctgggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgatattctacatatgttgtttggagtgaatgaacaagactactctcacgaggttgccaatatcgtaagcaatgcctcttgcaccaccaactgcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5665" stop="3039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5365" g_stop="5278" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="196" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="362" r_length="166" r_score="0.988"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="0.96"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4106" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="530" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4105" i_stop="3719" i_length="387">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3718" g_stop="3558" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="692" r_length="162" r_score="0.969"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3557" i_stop="3367" i_length="191">
            <donor d_prob="0.981" d_score="0.96"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3366" g_stop="3339" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="720" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E345992" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E345992" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5365" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4106"/>
          <exon e_start="3718" e_stop="3558"/>
          <exon e_start="3366" e_stop="3339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATG-ACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAGGTAAACTACGCGTTAATAGCATTTTTGATCCCTCGGTTATTGGTAGATTCTACTTTTAGTACTCGTAATATCTAAGCCGAGGGTCTATCAGAAACAGTCTCTCTGCCTTCACAAGGTCCCTTGACCTTTCATGCTAATATACATAACTAACGTAGCGAATGTCATAATTCATCCTATCATAACATTTGACTGATGCATACCTATGTTGCTCGGACCCTTCAAAAATGTTGTCAGATATGTGCCTGATTCTCCAAAAGTTACTCATTATTTGCTTAACGAGATAAAATCAACGAGATTGATCAATACAAGTCCAGCACTTTCAACATGATGAATCCTGAGAAAAGATGCTGATTAAATTACCTAATAATGTTGTTCGAAAACTTACAGGGAACCGGTGTGTTCGTTGATGGT-CCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTG-TTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAGGTCAGTGCAATTTATGTGAACGTGTTTGACTGGACACATAGTTTAAAAAAATAAAGCAAGATTTTTGAAAAAAAGGATCATTCTTTTGTGAACGGACTAAAAATGAAATTGTGTCACATAAATTTGGACGGAGGGAGTATATTTAATGTTCAAGAAGACATTGAAGTAATGTTCTACCTTTGTAAATGCAGCAATGCCTCTTGCACCACCAACTGCTTG</genome_strand>
        <mrna_strand>TGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGNACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................GGAACCGGTGTGTTCGTTGATGGTCCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATT-CTACATATGTTGTTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAG...............................................................................................................................................................................................CAATGCCTCTTGCACCACCAACTGCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E730364" ref_strand="+" ref_description="SGN-E730364 [LA23DF02]">
      <seq>gcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgacattgttatcgagggaaccggtgtgttcgttgatggtccgggtgctgggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgatattcctacatatgttgttggagtgaatgaacaagactactctcacgaggttgccaatatcgtaagcaatgcctcttgcaccaccaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5633" stop="3046"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5333" g_stop="5278" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="164" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="329" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4106" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="497" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4105" i_stop="3719" i_length="387">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3718" g_stop="3558" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="658" r_length="161" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="3557" i_stop="3367" i_length="191">
            <donor d_prob="0.981" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="3366" g_stop="3346" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="659" r_stop="679" r_length="21" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E730364" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730364" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5333" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4106"/>
          <exon e_start="3718" e_stop="3558"/>
          <exon e_start="3366" e_stop="3346"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAGGTAAACTACGCGTTAATAGCATTTTTGATCCCTCGGTTATTGGTAGATTCTACTTTTAGTACTCGTAATATCTAAGCCGAGGGTCTATCAGAAACAGTCTCTCTGCCTTCACAAGGTCCCTTGACCTTTCATGCTAATATACATAACTAACGTAGCGAATGTCATAATTCATCCTATCATAACATTTGACTGATGCATACCTATGTTGCTCGGACCCTTCAAAAATGTTGTCAGATATGTGCCTGATTCTCCAAAAGTTACTCATTATTTGCTTAACGAGATAAAATCAACGAGATTGATCAATACAAGTCCAGCACTTTCAACATGATGAATCCTGAGAAAAGATGCTGATTAAATTACCTAATAATGTTGTTCGAAAACTTACAGGGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAGGTCAGTGCAATTTATGTGAACGTGTTTGACTGGACACATAGTTTAAAAAAATAAAGCAAGATTTTTGAAAAAAAGGATCATTCTTTTGTGAACGGACTAAAAATGAAATTGTGTCACATAAATTTGGACGGAGGGAGTATATTTAATGTTCAAGAAGACATTGAAGTAATGTTCTACCTTTGTAAATGCAGCAATGCCTCTTGCACCACCAA</genome_strand>
        <mrna_strand>GCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................GGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAG...............................................................................................................................................................................................CAATGCCTCTTGCACCACCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E373408" ref_strand="+" ref_description="SGN-E373408 [TUS-31-D14]">
      <seq>gcttctcatgcagctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgacattgttatcgagggaaccggtgtgttcgttgatggtccgggtgctgggaagcacatccaagctggtgccaagaaagttatcatcactgcaccagcaaaaggtgctgatattcctacatatgttgttggagtgaatgaacaagactactctcacgaggttgccaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5673" stop="3265"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5373" g_stop="5278" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="204" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="369" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4106" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="537" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4105" i_stop="3719" i_length="387">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3718" g_stop="3565" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="691" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E373408" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373408" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5373" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4106"/>
          <exon e_start="3718" e_stop="3565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAGGTAAACTACGCGTTAATAGCATTTTTGATCCCTCGGTTATTGGTAGATTCTACTTTTAGTACTCGTAATATCTAAGCCGAGGGTCTATCAGAAACAGTCTCTCTGCCTTCACAAGGTCCCTTGACCTTTCATGCTAATATACATAACTAACGTAGCGAATGTCATAATTCATCCTATCATAACATTTGACTGATGCATACCTATGTTGCTCGGACCCTTCAAAAATGTTGTCAGATATGTGCCTGATTCTCCAAAAGTTACTCATTATTTGCTTAACGAGATAAAATCAACGAGATTGATCAATACAAGTCCAGCACTTTCAACATGATGAATCCTGAGAAAAGATGCTGATTAAATTACCTAATAATGTTGTTCGAAAACTTACAGGGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATA</genome_strand>
        <mrna_strand>GCTTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................GGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E327719" ref_strand="+" ref_description="SGN-E327719 [cTOC-20-A20]">
      <seq>tctcatgcagctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgacattgttatcgagggaaccggtgtgttcgttgatggtccgggtgctgggaagcacatccaagctggtgcccagaaagttatcatcactgcaccagcaaaaggtgctgatattcctacatatgttgttggagtgaatgaaacagactactct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5670" stop="3281"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5370" g_stop="5278" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="201" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="366" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4106" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="534" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4105" i_stop="3719" i_length="387">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3718" g_stop="3581" g_length="138"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="672" r_length="138" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E327719" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5370" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4106"/>
          <exon e_start="3718" e_stop="3581"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAGGTAAACTACGCGTTAATAGCATTTTTGATCCCTCGGTTATTGGTAGATTCTACTTTTAGTACTCGTAATATCTAAGCCGAGGGTCTATCAGAAACAGTCTCTCTGCCTTCACAAGGTCCCTTGACCTTTCATGCTAATATACATAACTAACGTAGCGAATGTCATAATTCATCCTATCATAACATTTGACTGATGCATACCTATGTTGCTCGGACCCTTCAAAAATGTTGTCAGATATGTGCCTGATTCTCCAAAAGTTACTCATTATTTGCTTAACGAGATAAAATCAACGAGATTGATCAATACAAGTCCAGCACTTTCAACATGATGAATCCTGAGAAAAGATGCTGATTAAATTACCTAATAATGTTGTTCGAAAACTTACAGGGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCT</genome_strand>
        <mrna_strand>TCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................GGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCCAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAAACAGACTACTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E300604" ref_strand="+" ref_description="SGN-E300604 [cLET-45-O20]">
      <seq>gaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcattgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgacattgttatcgagggaaccggtgtgttcgttgatggtccgggtgctgggaagcacatccaagctggtgccaagaaagttatcatcactgcacagcaaaaggtgctgatattcctacatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="4849" stop="3310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4549" g_stop="4384" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="166" r_length="166" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4273" g_stop="4106" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="334" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4105" i_stop="3719" i_length="387">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="3718" g_stop="3610" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="442" r_length="108" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E300604" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4549" e_stop="4384"/>
          <exon e_start="4273" e_stop="4106"/>
          <exon e_start="3718" e_stop="3610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAGGTAAACTACGCGTTAATAGCATTTTTGATCCCTCGGTTATTGGTAGATTCTACTTTTAGTACTCGTAATATCTAAGCCGAGGGTCTATCAGAAACAGTCTCTCTGCCTTCACAAGGTCCCTTGACCTTTCATGCTAATATACATAACTAACGTAGCGAATGTCATAATTCATCCTATCATAACATTTGACTGATGCATACCTATGTTGCTCGGACCCTTCAAAAATGTTGTCAGATATGTGCCTGATTCTCCAAAAGTTACTCATTATTTGCTTAACGAGATAAAATCAACGAGATTGATCAATACAAGTCCAGCACTTTCAACATGATGAATCCTGAGAAAAGATGCTGATTAAATTACCTAATAATGTTGTTCGAAAACTTACAGGGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATG</genome_strand>
        <mrna_strand>GACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCATTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................GGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCA-CAGCAAAAGGTGCTGATATTCCTACATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E327502" ref_strand="+" ref_description="SGN-E327502 [cTOC-19-N12]">
      <seq>tctcatgcagctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgacattgttatcgagggaaccggtgtgttcgttgatggtccgggtgctgggaagcacatcccagctggtgccnagaaagttatcatcactgcaccagcaaaaggtgctgatattcctacatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5670" stop="3311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5370" g_stop="5278" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="201" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="366" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4106" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="534" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4105" i_stop="3719" i_length="387">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3718" g_stop="3611" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="642" r_length="108" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E327502" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327502" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5370" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4106"/>
          <exon e_start="3718" e_stop="3611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAGGTAAACTACGCGTTAATAGCATTTTTGATCCCTCGGTTATTGGTAGATTCTACTTTTAGTACTCGTAATATCTAAGCCGAGGGTCTATCAGAAACAGTCTCTCTGCCTTCACAAGGTCCCTTGACCTTTCATGCTAATATACATAACTAACGTAGCGAATGTCATAATTCATCCTATCATAACATTTGACTGATGCATACCTATGTTGCTCGGACCCTTCAAAAATGTTGTCAGATATGTGCCTGATTCTCCAAAAGTTACTCATTATTTGCTTAACGAGATAAAATCAACGAGATTGATCAATACAAGTCCAGCACTTTCAACATGATGAATCCTGAGAAAAGATGCTGATTAAATTACCTAATAATGTTGTTCGAAAACTTACAGGGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATAT</genome_strand>
        <mrna_strand>TCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................GGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCCAGCTGGTGCCNAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E342491" ref_strand="+" ref_description="SGN-E342491 [cTOF-8-J9]">
      <seq>tcatgcagctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgacattgttatcgagggaaccggtgtgttcgttgatggtcccggttgctgggaagcacatccaagctggggccaggaaggtatcatcactgcaccagcaaaaggtgctgatattcctacatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5668" stop="3311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5368" g_stop="5278" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="199" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="364" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4106" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="531" r_length="167" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4105" i_stop="3719" i_length="387">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3718" g_stop="3611" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="639" r_length="108" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E342491" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5368" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4106"/>
          <exon e_start="3718" e_stop="3611"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAGGTAAACTACGCGTTAATAGCATTTTTGATCCCTCGGTTATTGGTAGATTCTACTTTTAGTACTCGTAATATCTAAGCCGAGGGTCTATCAGAAACAGTCTCTCTGCCTTCACAAGGTCCCTTGACCTTTCATGCTAATATACATAACTAACGTAGCGAATGTCATAATTCATCCTATCATAACATTTGACTGATGCATACCTATGTTGCTCGGACCCTTCAAAAATGTTGTCAGATATGTGCCTGATTCTCCAAAAGTTACTCATTATTTGCTTAACGAGATAAAATCAACGAGATTGATCAATACAAGTCCAGCACTTTCAACATGATGAATCCTGAGAAAAGATGCTGATTAAATTACCTAATAATGTTGTTCGAAAACTTACAGGGAACCGGTGTGTTCGTTGATGGT-CCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATAT</genome_strand>
        <mrna_strand>TCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAG-ACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................GGAACCGGTGTGTTCGTTGATGGTCCCGGTTGCTGGGAAGCACATCCAAGCTGGGGCC-AGGAAGGTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E397204" ref_strand="+" ref_description="SGN-E397204 [TUS-44-P4]">
      <seq>gcagctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttcctttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgacattgttatcgagggaaccggtgtgttcgttgatggtccgggtgctgggaagcacatccaagctggtagcaagaaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5664" stop="3353"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5364" g_stop="5278" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="196" r_length="109" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="361" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4106" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="529" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4105" i_stop="3719" i_length="387">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3718" g_stop="3653" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="595" r_length="66" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E397204" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5364" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4106"/>
          <exon e_start="3718" e_stop="3653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCC-TTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAGGTAAACTACGCGTTAATAGCATTTTTGATCCCTCGGTTATTGGTAGATTCTACTTTTAGTACTCGTAATATCTAAGCCGAGGGTCTATCAGAAACAGTCTCTCTGCCTTCACAAGGTCCCTTGACCTTTCATGCTAATATACATAACTAACGTAGCGAATGTCATAATTCATCCTATCATAACATTTGACTGATGCATACCTATGTTGCTCGGACCCTTCAAAAATGTTGTCAGATATGTGCCTGATTCTCCAAAAGTTACTCATTATTTGCTTAACGAGATAAAATCAACGAGATTGATCAATACAAGTCCAGCACTTTCAACATGATGAATCCTGAGAAAAGATGCTGATTAAATTACCTAATAATGTTGTTCGAAAACTTACAGGGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTT</genome_strand>
        <mrna_strand>GCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................GGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTAGCAAGAAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E281636" ref_strand="+" ref_description="SGN-E281636 [cLER-14-A6]">
      <seq>ggcttctcatgcagctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgacattgttatcgagggaaccggtgtgttcgttgatggtccgggtgctgggaagcacatccaagctggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5674" stop="3364"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5374" g_stop="5278" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="205" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="370" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4106" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="538" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4105" i_stop="3719" i_length="387">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3718" g_stop="3664" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="593" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E281636" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5374" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4106"/>
          <exon e_start="3718" e_stop="3664"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAGGTAAACTACGCGTTAATAGCATTTTTGATCCCTCGGTTATTGGTAGATTCTACTTTTAGTACTCGTAATATCTAAGCCGAGGGTCTATCAGAAACAGTCTCTCTGCCTTCACAAGGTCCCTTGACCTTTCATGCTAATATACATAACTAACGTAGCGAATGTCATAATTCATCCTATCATAACATTTGACTGATGCATACCTATGTTGCTCGGACCCTTCAAAAATGTTGTCAGATATGTGCCTGATTCTCCAAAAGTTACTCATTATTTGCTTAACGAGATAAAATCAACGAGATTGATCAATACAAGTCCAGCACTTTCAACATGATGAATCCTGAGAAAAGATGCTGATTAAATTACCTAATAATGTTGTTCGAAAACTTACAGGGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTG</genome_strand>
        <mrna_strand>GGCTTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................GGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E279460" ref_strand="+" ref_description="SGN-E279460 [cLER-11-N16]">
      <seq>aatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgacattgttatcgagggaaccggtgtgttcgttgatggtccgggtgctgggaagcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5644" stop="3376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5344" g_stop="5278" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="175" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="340" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4106" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="508" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4105" i_stop="3719" i_length="387">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3718" g_stop="3676" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="551" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E279460" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279460" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5344" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4106"/>
          <exon e_start="3718" e_stop="3676"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAGGTAAACTACGCGTTAATAGCATTTTTGATCCCTCGGTTATTGGTAGATTCTACTTTTAGTACTCGTAATATCTAAGCCGAGGGTCTATCAGAAACAGTCTCTCTGCCTTCACAAGGTCCCTTGACCTTTCATGCTAATATACATAACTAACGTAGCGAATGTCATAATTCATCCTATCATAACATTTGACTGATGCATACCTATGTTGCTCGGACCCTTCAAAAATGTTGTCAGATATGTGCCTGATTCTCCAAAAGTTACTCATTATTTGCTTAACGAGATAAAATCAACGAGATTGATCAATACAAGTCCAGCACTTTCAACATGATGAATCCTGAGAAAAGATGCTGATTAAATTACCTAATAATGTTGTTCGAAAACTTACAGGGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACA</genome_strand>
        <mrna_strand>AATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................GGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E398431" ref_strand="+" ref_description="SGN-E398431 [TUS-43-O3]">
      <seq>gcagctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttcctttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgacattgttatcgagggaaccggtgtgttcgttgatggtccgggtgctgggaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5664" stop="3380"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5364" g_stop="5278" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="196" r_length="109" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="361" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4106" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="529" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4105" i_stop="3719" i_length="387">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3718" g_stop="3680" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="568" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E398431" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398431" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5364" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4106"/>
          <exon e_start="3718" e_stop="3680"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCC-TTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAGGTAAACTACGCGTTAATAGCATTTTTGATCCCTCGGTTATTGGTAGATTCTACTTTTAGTACTCGTAATATCTAAGCCGAGGGTCTATCAGAAACAGTCTCTCTGCCTTCACAAGGTCCCTTGACCTTTCATGCTAATATACATAACTAACGTAGCGAATGTCATAATTCATCCTATCATAACATTTGACTGATGCATACCTATGTTGCTCGGACCCTTCAAAAATGTTGTCAGATATGTGCCTGATTCTCCAAAAGTTACTCATTATTTGCTTAACGAGATAAAATCAACGAGATTGATCAATACAAGTCCAGCACTTTCAACATGATGAATCCTGAGAAAAGATGCTGATTAAATTACCTAATAATGTTGTTCGAAAACTTACAGGGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAG</genome_strand>
        <mrna_strand>GCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................GGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E331443" ref_strand="+" ref_description="SGN-E331443 [cTOD-9-H24]">
      <seq>gcttctcatgcagctttggctccttcaagaatccctacaagcacaaggcttcgatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgacattgttatcgagggaaccggtgtgttcgttgatggtccgggtgctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5673" stop="3384"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5373" g_stop="5278" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="204" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="369" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4106" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="537" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4105" i_stop="3719" i_length="387">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3718" g_stop="3684" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="538" r_stop="572" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E331443" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331443" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5373" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4106"/>
          <exon e_start="3718" e_stop="3684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAGGTAAACTACGCGTTAATAGCATTTTTGATCCCTCGGTTATTGGTAGATTCTACTTTTAGTACTCGTAATATCTAAGCCGAGGGTCTATCAGAAACAGTCTCTCTGCCTTCACAAGGTCCCTTGACCTTTCATGCTAATATACATAACTAACGTAGCGAATGTCATAATTCATCCTATCATAACATTTGACTGATGCATACCTATGTTGCTCGGACCCTTCAAAAATGTTGTCAGATATGTGCCTGATTCTCCAAAAGTTACTCATTATTTGCTTAACGAGATAAAATCAACGAGATTGATCAATACAAGTCCAGCACTTTCAACATGATGAATCCTGAGAAAAGATGCTGATTAAATTACCTAATAATGTTGTTCGAAAACTTACAGGGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGG</genome_strand>
        <mrna_strand>GCTTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCGATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................GGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E285307" ref_strand="+" ref_description="SGN-E285307 [cLER-20-O21]">
      <seq>tctcatgcagctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgacattgttatcgagggaaccggtgtgttcgttgatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5670" stop="3396"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5370" g_stop="5278" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="201" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="366" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4106" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="534" r_length="168" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="4105" i_stop="3719" i_length="387">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="3718" g_stop="3696" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="535" r_stop="557" r_length="23" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E285307" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285307" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5370" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4106"/>
          <exon e_start="3718" e_stop="3696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAGGTAAACTACGCGTTAATAGCATTTTTGATCCCTCGGTTATTGGTAGATTCTACTTTTAGTACTCGTAATATCTAAGCCGAGGGTCTATCAGAAACAGTCTCTCTGCCTTCACAAGGTCCCTTGACCTTTCATGCTAATATACATAACTAACGTAGCGAATGTCATAATTCATCCTATCATAACATTTGACTGATGCATACCTATGTTGCTCGGACCCTTCAAAAATGTTGTCAGATATGTGCCTGATTCTCCAAAAGTTACTCATTATTTGCTTAACGAGATAAAATCAACGAGATTGATCAATACAAGTCCAGCACTTTCAACATGATGAATCCTGAGAAAAGATGCTGATTAAATTACCTAATAATGTTGTTCGAAAACTTACAGGGAACCGGTGTGTTCGTTGATGG</genome_strand>
        <mrna_strand>TCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................GGAACCGGTGTGTTCGTTGATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E327257" ref_strand="+" ref_description="SGN-E327257 [cTOC-19-G14]">
      <seq>tctcatgcagctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattgcatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcaaggatcctcttaagcttccatgggctgaaattggtattgacatttgttatcgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5670" stop="3806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5370" g_stop="5278" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="201" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="366" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4106" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="535" r_length="169" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E327257" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327257" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5370" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4106"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACA-TTGTTATCGAG</genome_strand>
        <mrna_strand>TCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTGCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAAGGATCCTCTTAAGCTTCCATGGGCTGAAATTGGTATTGACATTTGTTATCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E289144" ref_strand="+" ref_description="SGN-E289144 [cLES-18-J5]">
      <seq>atatacaaaaaccatggcttctcatgcagctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgacattgttatcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5689" stop="3807"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5389" g_stop="5278" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="220" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="385" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4107" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="552" r_length="167" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E289144" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5389" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4107"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATACAAAAACCATGGCTTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGA</genome_strand>
        <mrna_strand>ATATACAAAAACCATGGCTTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E297982" ref_strand="+" ref_description="SGN-E297982 [cLET-38-D18]">
      <seq>tcatgcagctttggctccttcaagaatccctacaagcacaatgcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcanggatcctcttaagcttccatgggctgaacttggtattgacattgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5668" stop="3810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5368" g_stop="5278" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="199" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="364" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4110" g_length="164"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="528" r_length="164" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E297982" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>528</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E297982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5368" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4110"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTAT</genome_strand>
        <mrna_strand>TCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAATGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCANGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E287930" ref_strand="+" ref_description="SGN-E287930 [cLES-7-C11]">
      <seq>tcatgcagctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5668" stop="3815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5368" g_stop="5278" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="199" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="364" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4115" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="523" r_length="159" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E287930" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5368" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4115"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATT</genome_strand>
        <mrna_strand>TCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E298706" ref_strand="+" ref_description="SGN-E298706 [cLET-44-N5]">
      <seq>accatggcttctcatgcagctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5679" stop="3817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5379" g_stop="5278" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="210" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="375" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4117" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="532" r_length="157" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E298706" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5379" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATGGCTTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACA</genome_strand>
        <mrna_strand>ACCATGGCTTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E294510" ref_strand="+" ref_description="SGN-E294510 [cLET-14-P14]">
      <seq>ctcatgcagctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5669" stop="3817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5369" g_stop="5278" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="200" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="365" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4117" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="522" r_length="157" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E294510" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294510" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5369" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACA</genome_strand>
        <mrna_strand>CTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E294511" ref_strand="+" ref_description="SGN-E294511 [cLET-14-P14]">
      <seq>ctcatgcagctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtattgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5669" stop="3817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5369" g_stop="5278" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="200" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="365" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4117" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="522" r_length="157" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E294511" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5369" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4117"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACA</genome_strand>
        <mrna_strand>CTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E283977" ref_strand="+" ref_description="SGN-E283977 [cLER-13-D14]">
      <seq>aatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctgaacttggtatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5486" stop="3821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5291" g_stop="5278" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="122" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="287" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4121" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="440" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E283977" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5291" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATT</genome_strand>
        <mrna_strand>AATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E294597" ref_strand="+" ref_description="SGN-E294597 [cLET-22-L7]">
      <seq>accatggcttctcatgcagctttggctccttcaagaatccctacaagcacaaggcttctgtgaaagaactcttactctttccctactcaatgcttctctaagaaattcgaagtagcagaggtctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgctgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgctgatggaaagaacatctaaattggctttagcagggatcctcttaagcttccatgggctgaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5679" stop="3829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5379" g_stop="5278" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="0.96"/>
            <acceptor a_prob="1.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="210" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="375" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4129" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="520" r_length="145" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E294597" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E294597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5379" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATGGCTTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAAC</genome_strand>
        <mrna_strand>ACCATGGCTTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTGTGAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTCGAAGTAGCAGAGGTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGCTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGCTGATGGAAAGAACATCTAAATTGGCTTTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E283250" ref_strand="+" ref_description="SGN-E283250 [cLER-12-A1]">
      <seq>tcatgcagctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaagaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5668" stop="3832"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5368" g_stop="5278" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="199" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="364" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4132" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="506" r_length="142" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E283250" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5368" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4132"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTG</genome_strand>
        <mrna_strand>TCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAAGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E295656" ref_strand="+" ref_description="SGN-E295656 [cLET-25-K16]">
      <seq>ggcttctcatgcagctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagcagggatcctcttaagcttccatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5674" stop="3833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5374" g_stop="5278" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="205" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="370" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4133" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="511" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E295656" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5374" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4133"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCT</genome_strand>
        <mrna_strand>GGCTTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E282398" ref_strand="+" ref_description="SGN-E282398 [cLER-18-H13]">
      <seq>ttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagttgtctctagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5658" stop="3859"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5358" g_stop="5278" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="189" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="354" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4159" g_length="115"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="469" r_length="115" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E282398" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5358" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4159"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCA</genome_strand>
        <mrna_strand>TTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E288009" ref_strand="+" ref_description="SGN-E288009 [cLES-7-D3]">
      <seq>tccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgntgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5653" stop="3869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5353" g_stop="5278" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="184" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="349" r_length="165" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4169" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="454" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E288009" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E288009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5353" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTT</genome_strand>
        <mrna_strand>TCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGNTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E300454" ref_strand="+" ref_description="SGN-E300454 [cLET-45-F13]">
      <seq>ctcatgcagctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaattcgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgcgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatggaaagaacattaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5669" stop="3873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5369" g_stop="5278" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="200" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="365" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4173" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="466" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E300454" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>466</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300454" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5369" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAA</genome_strand>
        <mrna_strand>CTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTCGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGCGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E281983" ref_strand="+" ref_description="SGN-E281983 [cLES-2-K6]">
      <seq>ttctcatgcagctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5671" stop="3886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5371" g_stop="5278" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="202" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="203" r_stop="367" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4186" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="455" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E281983" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5371" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4186"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATG</genome_strand>
        <mrna_strand>TTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E290841" ref_strand="+" ref_description="SGN-E290841 [cLET-10-M2]">
      <seq>accagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattagtgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="4831" stop="3887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="4531" g_stop="4384" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="148" r_length="148" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4273" g_stop="4187" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="235" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E290841" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>235</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="4531" e_stop="4384"/>
          <exon e_start="4273" e_stop="4187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGAT</genome_strand>
        <mrna_strand>ACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E396898" ref_strand="+" ref_description="SGN-E396898 [TUS-44-O4]">
      <seq>ttgggatccttctatactcccgacaagcattcggcttctgacgcataactcttaatctttccctattctttgcttctctaacaaatttgaagtatcaaatttctctggtcttctatcaattggatgtgtgacattttgtatcaaagagtcttcctttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggagtgtgaaactattagtgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5493" stop="3909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5359" g_stop="5278" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.768"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="0.80"/>
            <acceptor a_prob="1.000" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="191" r_length="109" r_score="0.917"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="356" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4188" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="442" r_length="86" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E396898" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5359" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4188"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCC-TTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGA</genome_strand>
        <mrna_strand>TTGGGATCCTTCTATACTCCCGACAAGCATTCGGCTTCTGACGCATAACTCTTAATCTTTCCCTATTCTTTGCTTCTCTAAC......................................................................................................AAATTTGAAGTATCAAATTTCTCTGGTCTTCTATCAATTGGATGTGTGACATTTTGTATCAAAGAGTCTTCCTTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGAGTGTGAAACTATTAGTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E283104" ref_strand="+" ref_description="SGN-E283104 [cLER-17-G5]">
      <seq>tctcatgcagctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5670" stop="3894"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5370" g_stop="5278" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="201" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="366" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4194" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="446" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E283104" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5370" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4194"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAG</genome_strand>
        <mrna_strand>TCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E286610" ref_strand="+" ref_description="SGN-E286610 [cLES-12-I12]">
      <seq>gatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgatgtgaaaatagtggataatgaaactatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5397" stop="3896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5097" g_stop="5068" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="195" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4273" g_stop="4196" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="273" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E286610" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286610" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5097" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATT</genome_strand>
        <mrna_strand>GATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E397009" ref_strand="+" ref_description="SGN-E397009 [TUS-44-P3]">
      <seq>gcagctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttcctttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaacattcaaggctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5664" stop="3923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5364" g_stop="5278" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="196" r_length="109" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="361" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4223" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="412" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E397009" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E397009" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5364" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCC-TTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGAT</genome_strand>
        <mrna_strand>GCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E312942" ref_strand="+" ref_description="SGN-E312942 [cTOA-14-G15]">
      <seq>atttaagtagtttttgtcaaatatacaaaaaccatggcttctcatgcagctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgattccatgttgggaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5709" stop="3935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5409" g_stop="5278" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="240" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="405" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4235" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="444" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E312942" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E312942" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5409" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTAAGTAGTTTTTGTCAAATATACAAAAACCATGGCTTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACA</genome_strand>
        <mrna_strand>ATTTAAGTAGTTTTTGTCAAATATACAAAAACCATGGCTTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E291679" ref_strand="+" ref_description="SGN-E291679 [cLET-6-M9]">
      <seq>ctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggtggtgtcaagaatgcatctcacttgcttaagtatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5603" stop="3950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5303" g_stop="5278" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="134" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="299" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4250" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="323" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E291679" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>323</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291679" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5303" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4250"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTTAAGTATGAT</genome_strand>
        <mrna_strand>CTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT..............................................................................................................GCATCTCACTTGCTTAAGTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E396749" ref_strand="+" ref_description="SGN-E396749 [TUS-43-P3]">
      <seq>gcagctttggctccttctttaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttcctttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcatcactggatgtcgttgttgtcgatgacagtggtggtgtaaagaatgcatctcacttgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5644" stop="4083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5364" g_stop="5278" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="196" r_length="109" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4384" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="361" r_length="165" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110">
            <donor d_prob="0.534" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="4273" g_stop="4259" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="376" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E396749" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>375</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E396749" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5364" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4384"/>
          <exon e_start="4273" e_stop="4259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCC-TTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGTGAGCATTACCTGCAAAAAGATCAGCACATTTATAGCATTTGTTGGTTTTACTATCAAACTTTTTCGCGGTACGATGCTAAATGTATTGCAAATATTATGTTAATGCAGGCATCTCACTTGCTT</genome_strand>
        <mrna_strand>GCAGCTTTGGCTCCTTCTTTAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCATCACTGGATGTCGTTGTTGTCGATGACAGTGGTGGTGTAAAGAAT..............................................................................................................GCATCTCACTTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E277247" ref_strand="+" ref_description="SGN-E277247 [cLEL-3-E20]">
      <seq>gcacgagctcatgcagctttggcttcttcaagaatccctacaagcacaagggttggatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtcgttgttgtcaatgacagtggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5669" stop="4096"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5360" g_stop="5278" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="99" r_length="83" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="207" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4396" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="360" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E277247" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>344</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5360" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4396"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGT</genome_strand>
        <mrna_strand>CTTTGGCTTCTTCAAGAATCCCTACAAGCACAAGGGTTGGATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E398589" ref_strand="+" ref_description="SGN-E398589 [TUS-43-O4]">
      <seq>gcagctttggctccttttttaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttcctttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaatgattttttcactggatgtcgttgttgtcaatgacagtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5644" stop="4097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5364" g_stop="5278" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="196" r_length="109" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4397" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="349" r_length="153" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E398589" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E398589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5364" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCC-TTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGA-CTCACCACTGGATGTCGTTGTTGTCAATGACAGTGG</genome_strand>
        <mrna_strand>GCAGCTTTGGCTCCTTTTTTAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAATGATTTTTTCACTGGATGTCGTTGTTGTCAATGACAGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E281286" ref_strand="+" ref_description="SGN-E281286 [cLEL-1-K14]">
      <seq>gcaccagcatgcagctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccactggatgtncgtntgttgtcaatgacagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5667" stop="4099"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5360" g_stop="5278" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="97" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="205" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4399" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="357" r_length="152" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E281286" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5360" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4399"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGT-CGT-TGTTGTCAATGACAGT</genome_strand>
        <mrna_strand>CTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTNCGTNTGTTGTCAATGACAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E296102" ref_strand="+" ref_description="SGN-E296102 [cLET-24-G22]">
      <seq>aaaaaccatggcttctcatgcagctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagcagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttcctttcttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagcgaaaggagaaacagctgccacattgaaggttgccatcaatggcttcggaagaatcggcaggaacttccttcgttgttggcatggacgccaggactcaccactgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5683" stop="4122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5383" g_stop="5278" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="214" r_length="108" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4422" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="215" r_stop="341" r_length="127" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E296102" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5383" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCATGGCTTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGG</genome_strand>
        <mrna_strand>AAAAACCATGGCTTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGCAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTCTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGCGAAAGGAGAAACAGCTGCCACATTGAAGGTTGCCATCAATGGCTTCGGAAGAATCGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCCAGGACTCACCACTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E279203" ref_strand="+" ref_description="SGN-E279203 [cLEL-4-P14]">
      <seq>gcaccagcatgcagctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgttgttggcatggacgcaaggactcaccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5667" stop="4124"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5360" g_stop="5278" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="97" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="205" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4424" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="330" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E279203" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279203" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5360" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4424"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACT</genome_strand>
        <mrna_strand>CTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E213261" ref_strand="+" ref_description="SGN-E213261 [cLEC-72-P22]">
      <seq>cttctcatgcagctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaacagttgccaaattgaaggttgccatcaatggtttcggaagaattggcaggaacttccttcgntgttggcatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5672" stop="4142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5372" g_stop="5278" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="203" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4442" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="310" r_length="107" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E213261" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>310</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5372" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGG</genome_strand>
        <mrna_strand>CTTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGNTGTTGGCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E283834" ref_strand="+" ref_description="SGN-E283834 [cLES-1-L4]">
      <seq>tttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaaggagaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5659" stop="4214"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5359" g_stop="5278" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="190" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4514" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="225" r_length="35" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E283834" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>225</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5359" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4514"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAAGGAGAAAC</genome_strand>
        <mrna_strand>TTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E295373" ref_strand="+" ref_description="SGN-E295373 [cLET-23-K14]">
      <seq>accatggcttctcatgcagctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcactcccaagaccacaggatcagcaggaccagtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5679" stop="4222"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5379" g_stop="5278" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5068" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="210" r_length="108" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="4548" g_stop="4522" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="237" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E295373" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295373" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5379" e_stop="5278"/>
          <exon e_start="5175" e_stop="5068"/>
          <exon e_start="4548" e_stop="4522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATGGCTTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAGGTAAGCATTTTCACTCTTACTCAGTAAAACATCTGCTTTAGACCGTGAAGCAAAACACTAAACACAATAGAATATTGATCTTTTCGATACTTATGACTAAACACTCTTCCCTCATTAGTCTGTTTTGAGAAGAATGACATATTTCTATATCTGTATCCTTTTCACCATAAACGTCTCATTTTACTGTTATTGGCATGTTTAAACGTAACAAGCTCTAAAAAGATTGTTCTTTTTTCACTACGTTGTCATATGGAGTGAAACATGAGATAAGAAATGCAGTGTTTCATCACTAAGATATCAAATAGTAGTCTCGAATTCAAGGTGTGTTATGTTTTCATTGCTAATAACCAATTTGATCTCGAGGCAAGGAATAATCAGTTACGCTAAAAGTTATAATTAACACAGCCAGAACCATACGCGGGTACCCAAATGAAGTTCTGACCATCTATCATATAACGGAAAAACAGTAGTGTTTTGTACCTTTCTTCCTGAAACTCATTTACTTTTATCTCAAATCAGACCACAGGATCAGCAGGACCAGTGAAA</genome_strand>
        <mrna_strand>ACCATGGCTTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACAGGATCAGCAGGACCAGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E291717" ref_strand="+" ref_description="SGN-E291717 [cLET-6-O18]">
      <seq>aaccatggcttctcatgcagctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaagagtcttccttttttgatgttgtgtctgctcaactcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5680" stop="4775"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5380" g_stop="5278" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5075" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="204" r_length="101" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E291717" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>204</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E291717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5380" e_stop="5278"/>
          <exon e_start="5175" e_stop="5075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCATGGCTTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCAC</genome_strand>
        <mrna_strand>AACCATGGCTTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E202808" ref_strand="+" ref_description="SGN-E202808 [cLEB-1-K17]">
      <seq>gcaccagcatgcagctttggctccttcaagaatccctacaagcacaaggcttctatcaaagaactcttactctttccctactcaatgcttctctaagaaatttgaagtagcagagttctctggtcttcgatcgagtggatgtgtgacattttgtaacaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="5667" stop="4811"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="5360" g_stop="5278" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="97" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102">
            <donor d_prob="0.626" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="5175" g_stop="5111" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="162" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E202808" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>148</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202808" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="5360" e_stop="5278"/>
          <exon e_start="5175" e_stop="5111"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAGGTCTTTGCTTTCTTCCCAAAAAAAAAAAAAAAGTCGAAAAAAAAGAAGATTTTTCTTCTAGTAAATGTGTTGTTGTTGTTGATTTATCTGTTGTTTTTGTAGAAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGA</genome_strand>
        <mrna_strand>CTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG......................................................................................................AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E347616" ref_strand="+" ref_description="SGN-E347616 [cTOF-26-H5]">
      <seq>tcactcttcctacgccggccggccgccgtcctccgccgttgattcatttttccggtgactgtcttccacctcacttttacccacttcccctaaccttacaggatgatagctatttcgaactctttgcttttatcaacaaccccttctctgcatttcacttcagggtccagtttgaagtcggcagataaaagtgtcggtggcaccaccaaattggccttcagtccaaggcacggaggaaaatcatcctcatctagaagatcattaaccgttcaagcagaatatagtgatggggggaggccaagcaattcaagcatctttgtaggtggctttcttttaggaggagtaatcgttggtgcacttggttgtatcttcgcaccagagattagcaaggcattagccgaaacagataggaaggacctcatgagaaaactgccaaagtttatatatgatgaagaaaaagcattggagaagcaacgcaagatactaacggagaagatagtccaattgaatgatgctattgacgacatctccaaccagttaaggtccggggatgcagaaaatggagctgcagtgaacctagatgaagttgaaagtgttatataaacaacacttacaattggttttcatgtaaatgaataaactttctgaacacattgatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="11121" stop="6424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10821" g_stop="10659" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10658" i_stop="8911" i_length="1748">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.793" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8910" g_stop="8790" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="284" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8789" i_stop="8441" i_length="349">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8440" g_stop="8344" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="381" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8343" i_stop="8143" i_length="201">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8142" g_stop="8056" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="468" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8055" i_stop="6919" i_length="1137">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6918" g_stop="6724" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="469" r_stop="663" r_length="195" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E347616" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E347616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10821" e_stop="10659"/>
          <exon e_start="8910" e_stop="8790"/>
          <exon e_start="8440" e_stop="8344"/>
          <exon e_start="8142" e_stop="8056"/>
          <exon e_start="6918" e_stop="6724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCTCTTCCTACGCCGGCCGGCCGCCGTCCTCCGCCGTTGATTCATTTTTCCGGTGACTGTCTTCCACCTCACTTTTACCCACTTCCCCTAACCTTACAGGATGATAGCTATTTCGAACTCTTTGCTTTTATCAACAACCCCTTCTCTGCATTTCACTTCAGGTAATTCTTTAAATCTTCTAAAGTTTACATTTTTATTCATGGGGTTTGGATTATTTGTTGTAATTTGCTGTTTTTGATGCACCCTTTAAAGTGATTTCGAATATGGTATGTTGATTAGTTGGTATTTGAGCTTAATTTACCCTGTGTGTTCACTAATCGAGCTTCGTAATAGCATAATTGAATGATTATTTCAAGATTTGTGTTTTGTTCTCTACTGATTTTAGCTTTGATATGCTTTACTCGAGTCGAGGGTGTTAGGTAGGCCTACGCACCACCCTACTCGGACTCCACTTGTGGGATTACACTGTGTTGTTGTTGTTGCTGTTCTCTATTGATTTTAGGTTTGAGATGCTTTAGTTGAACCGAGAATCTACCCTCTCTACCTTCACAAGCATAAGGTAGGTGTAAGGTATGTGTACACATCATACTCCCCGGATATATCCCACTTGTGTGATTACACTTGGTATGTTGTTGTTACCTACTGATTTTAGCGTTGGTAGGGTAATGTCTGCGTACACACCTCCCTTCCTAAACCTCACTTGTGGGATTACGCTGTGTATGTTTTTGCTGTTGTTTACTGATATTAACTGATAAAGTAGTAAACTAACTGCTGCATAGTGTGATTTGTGTCTCGAAAGAAGTTAGCTAAGAACAAAGCAAAATGGCCTCAAGAGCTATAGGCTATTGGATAAAGGATCTTTATTGTTGTAATACCTCCGTTAAGTTGTTTTTTCGCTCTGATCAGAGGCTTGTATGTGATAAGTATGACATATATTGAACATCCAGTTTTAAGGAACACCAATTTGCTTTAGAAACTAGGTGATTTCTTTTGATAGGCTTGTAGTCGGAGTTGTTAGGTACAACTCTAGGTACCTGACTTGGTGGGAGATAGCAGGTATTCGGTGGAATTAGTCACGGTGCACAAGTTGTCACTATCATGAAAGAGATATTCATTTCCTTCATATTATTTGGTGGTGTTTTGCTGGATACGAAGTTTAAGAAATAGAGAAACACTATCCTTAGATTGCACTATCTTCATTTCAACGTTCGTATTTTATCTTTAATGACACACTTATAGGAATGACATGTTTAAGATACAAGATTCAGAGGGTAGTTTTGGTATGTTAACATCTCTAATTTAAGTCCACAAGATTCAATAGTTCTCCAAACATGTTTAAGCAAAATGGTGCATATGTTTGTTTCAATACTACATTAAAATAAGGTGCATGATAAGATTCAGAGGGTAGTTTTGGTATGTTAACATCTCTAATTTAAGTCCACAAGATTCAATAGTTCTCCAAACATGTTTAAGCAAAATGGTGCATATGTTTGTTTCAATACTACATTAAAATAAGGTGCATGATAAGATTCAGAGGGTAGTTTTGGTATGTTAACATCTCTAATTTAAGTCCACAAGATTCAATAGTTCTCCAAACATGTTTAAGCAAAATGGTGCATATGTTTGTTTCAATACTACATTAAAATAAGGTGCATGATAAGATTCAAAGACCTTCCATGCTTCTTATTCAATTCTTTAAGCATAACATCTAAATGAAAATTGTTGGATTCAAAATGAATTGTGTGTTTTTTTGTTCGAATTATTTGTGGAACTGCATGAAGCTAAAAATTCTCATGACTAATATGATTGGTTTTAGTAGTACATGATCATATGCTGCATTGATGGCTCCCTCTTCACCCAAACCTACATGAGTGATGTGATATAAGTCCAGTAACTTTTGATGTGCTAGGGTCCAGTTTGAAGTCGGCAGATAAAAGTGTCGGTGGCACCACCAAATTGGCCTTCAGTCCAAGGCACGGAGGAAAATCATCCTCATCTAGAAGATCATTAACCGTTCAAGCAGAATATAGGTACTGCTTCTCTTGTTCTTACGTGCTCTACTCGTGCAACTTATACATTGATGATATACCACACTTCTTTTTGTTTGGTTGTCACACTCACTTGTCTTTCTTGTAGATGATATTTTCATCTCAATAAGTTAGTGTGAGCTTTAATTAGACCAAATCAACTCAAAAGAACCTTCCTGCTCCTTCAATTATTTAGTTTTCTCTGACCGTTGTTCTGCAAAACTATAAATCCAATTGATTCCTGAGTGACAGAAGCAAACCTGGCTCTTGCCATTAAATAGGAAAAAGAGTGTTGTAGTTCTGTTTCTTTCATACATTGGTGATCCACCGAGTCTTTCTTGTTAATTGGCAGTGATGGGGGGAGGCCAAGCAATTCAAGCATCTTTGTAGGTGGCTTTCTTTTAGGAGGAGTAATCGTTGGTGCACTTGGTTGTATCTTCGCACCAGAGGTAATCATTTTATGCTAAAACTAACTTATTTTCGGGTAAAATGCAGTAGCACTTGTATTAGTCACTGCCTTTGGTCGTCTTTGCTCGTTAATACTTGTGAATTTGCCACATCACTCATTGATTAATGCCTTCTCCACATTTCATCTCTTGCGGTGTACCTGGGAGCAGTAAGCTGACTGCCCTTTAATTTCTCTTCTACAGATTAGCAAGGCATTAGCCGAAACAGATAGGAAGGACCTCATGAGAAAACTGCCAAAGTTTATATATGATGAAGAAAAAGCATTGGAGGTAAGTTAATATTATGTACGTCTTTTATTAGGAAGCAGTAAGAAAGAGAAATAGTGTCTTTTTTTTGGTCGTGCACGCTCGCGCTTCGTGCGAGTGTAGAGACACACAACAAACACACATATTATATCAGAGTCCTCTATTCTGGCTGATTAAATCCCTCCTTACAAGTGTAATCCTCTAAGTTGTAGCTATCTGTCGCTTTGGAGTCTTCCTTCGTGGATCTTCAAATGGTCCTGAATCCTGATTGCTGAGATTTGGTAGTTTATGTAAGTTCCGTTTTGTAGTCATGAACTTATGAGACGAAGTACCTTGCAAGAGATATAAAGACAAAGGCTAGAGAAGATACTCTGTGACCAGTCATTGCTAAGATTTGAAGCACCCCCAACCAAGGATGTTCTACAGTGTTTTTTGATAACCTTGGTGTCCGGTCCAGCTTACATGCACCTCAATTAAGTCCACGGGATACTTTTCACTTCCCACTAGCATCAAGTACCAAGTACCATGTAATTGGGATAAATGAGAAGAAATCACCTTGTGTTTTTTGTCTCCCCTGGATTTGAACTTGAGACCTCGTGGTTCTCACCCCACTTTATTAACAACTAGGCCACACCTCTGGGTGAAAATGTTCGATTGTTTTAGAACTGAAGTTTTGTTTGATTACTAGTTAAATGATGCTTTGATACTCCCTTTTTAGAAAACTTTCGTTTTAACTATATATAGATGCTACTCTTCGTCTTCTTTTTTTTTGTTAAGTAAGATGTTTCATTACTGGCATCTAGAGATGCAAAACGTACAACAGTAGCAACTGTTAGCTGCAATACAATCTGACTTATTCAACCTCCGGGAGCTAGACGATGTTTTTCTTGGTCTTTAAATGAACCTAGTTAGGTGTTCTATACAAGAAAGTCGTGCTTTCTTCTCCAGGGTTTCTCTCTCTTTGTCAATTGCAAGAAAGAGGAGCAGGCTTGTTGCATCAAACCTATCACCTTTATCTAAGTTTGTTACTTTGCTTGAATCATATAGTTCCGGGAGGATACAAAAAAAGCTGCCGAAGGACTAAAGATCTAAGTTTGAGAAAACAATATTCTTATTCCTGTTTCAAGTTCTTCTAATGTATGCATGCTGTTTCGTCTGCAGAAGCAACGCAAGATACTAACGGAGAAGATAGTCCAATTGAATGATGCTATTGACGACATCTCCAACCAGTTAAGGTCCGGGGATGCAGAAAATGGAGCTGCAGTGAACCTAGATGAAGTTGAAAGTGTTATATAAACAACACTTACAATTGGTTTTCATGTAAATGAATAAACTTTCTGAACACATTGATCTAAT</genome_strand>
        <mrna_strand>TCACTCTTCCTACGCCGGCCGGCCGCCGTCCTCCGCCGTTGATTCATTTTTCCGGTGACTGTCTTCCACCTCACTTTTACCCACTTCCCCTAACCTTACAGGATGATAGCTATTTCGAACTCTTTGCTTTTATCAACAACCCCTTCTCTGCATTTCACTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCAGTTTGAAGTCGGCAGATAAAAGTGTCGGTGGCACCACCAAATTGGCCTTCAGTCCAAGGCACGGAGGAAAATCATCCTCATCTAGAAGATCATTAACCGTTCAAGCAGAATATAG.............................................................................................................................................................................................................................................................................................................................................................TGATGGGGGGAGGCCAAGCAATTCAAGCATCTTTGTAGGTGGCTTTCTTTTAGGAGGAGTAATCGTTGGTGCACTTGGTTGTATCTTCGCACCAGAG.........................................................................................................................................................................................................ATTAGCAAGGCATTAGCCGAAACAGATAGGAAGGACCTCATGAGAAAACTGCCAAAGTTTATATATGATGAAGAAAAAGCATTGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAACGCAAGATACTAACGGAGAAGATAGTCCAATTGAATGATGCTATTGACGACATCTCCAACCAGTTAAGGTCCGGGGATGCAGAAAATGGAGCTGCAGTGAACCTAGATGAAGTTGAAAGTGTTATATAAACAACACTTACAATTGGTTTTCATGTAAATGAATAAACTTTCTGAACACATTGATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E285351" ref_strand="+" ref_description="SGN-E285351 [cLER-20-D13]">
      <seq>gccggccggccgccgtcctccgccgttgattcatttttccggtgactgtcttccacctcacttttacccacttcccctaaccttacaggatgatagctatttcgaactctttgcttttatcaacaaccccttctctgcatttcacttcagggtccagtttgaagtcggcagataaaagtgtcggtggcaccaccaaattggccttcagtccaaggcacggaggaaaatcatcctcatctagaagatcattaaccgttcaagcagaatatagtgatggggggaggccaagcaattcaagcatctttgtaggtggctttcttttaggaggagtaatcgttggtgcacttggttgtatcttcgcaccagagattagcaaggcattagccgaaacagataggaaggacctcatgagaaaactgccaaagtttatatatgatgaagaaaaagcattggagaagcaacgcaagatactaacggagaagatagtccaattgaatgatgctattgacgacatctccaaccagttaaggtccggggatgcagaaaatggagctgcagtgaacctagatgaagttgaaagtgttatataaacaacacttacaattggttttcatgtaaatgaataaactttctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="11108" stop="6440"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10808" g_stop="10659" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10658" i_stop="8911" i_length="1748">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.793" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8910" g_stop="8790" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="271" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8789" i_stop="8441" i_length="349">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8440" g_stop="8344" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="368" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8343" i_stop="8143" i_length="201">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8142" g_stop="8056" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="455" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8055" i_stop="6919" i_length="1137">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6918" g_stop="6740" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="634" r_length="179" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E285351" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>634</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10808" e_stop="10659"/>
          <exon e_start="8910" e_stop="8790"/>
          <exon e_start="8440" e_stop="8344"/>
          <exon e_start="8142" e_stop="8056"/>
          <exon e_start="6918" e_stop="6740"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGCCGGCCGCCGTCCTCCGCCGTTGATTCATTTTTCCGGTGACTGTCTTCCACCTCACTTTTACCCACTTCCCCTAACCTTACAGGATGATAGCTATTTCGAACTCTTTGCTTTTATCAACAACCCCTTCTCTGCATTTCACTTCAGGTAATTCTTTAAATCTTCTAAAGTTTACATTTTTATTCATGGGGTTTGGATTATTTGTTGTAATTTGCTGTTTTTGATGCACCCTTTAAAGTGATTTCGAATATGGTATGTTGATTAGTTGGTATTTGAGCTTAATTTACCCTGTGTGTTCACTAATCGAGCTTCGTAATAGCATAATTGAATGATTATTTCAAGATTTGTGTTTTGTTCTCTACTGATTTTAGCTTTGATATGCTTTACTCGAGTCGAGGGTGTTAGGTAGGCCTACGCACCACCCTACTCGGACTCCACTTGTGGGATTACACTGTGTTGTTGTTGTTGCTGTTCTCTATTGATTTTAGGTTTGAGATGCTTTAGTTGAACCGAGAATCTACCCTCTCTACCTTCACAAGCATAAGGTAGGTGTAAGGTATGTGTACACATCATACTCCCCGGATATATCCCACTTGTGTGATTACACTTGGTATGTTGTTGTTACCTACTGATTTTAGCGTTGGTAGGGTAATGTCTGCGTACACACCTCCCTTCCTAAACCTCACTTGTGGGATTACGCTGTGTATGTTTTTGCTGTTGTTTACTGATATTAACTGATAAAGTAGTAAACTAACTGCTGCATAGTGTGATTTGTGTCTCGAAAGAAGTTAGCTAAGAACAAAGCAAAATGGCCTCAAGAGCTATAGGCTATTGGATAAAGGATCTTTATTGTTGTAATACCTCCGTTAAGTTGTTTTTTCGCTCTGATCAGAGGCTTGTATGTGATAAGTATGACATATATTGAACATCCAGTTTTAAGGAACACCAATTTGCTTTAGAAACTAGGTGATTTCTTTTGATAGGCTTGTAGTCGGAGTTGTTAGGTACAACTCTAGGTACCTGACTTGGTGGGAGATAGCAGGTATTCGGTGGAATTAGTCACGGTGCACAAGTTGTCACTATCATGAAAGAGATATTCATTTCCTTCATATTATTTGGTGGTGTTTTGCTGGATACGAAGTTTAAGAAATAGAGAAACACTATCCTTAGATTGCACTATCTTCATTTCAACGTTCGTATTTTATCTTTAATGACACACTTATAGGAATGACATGTTTAAGATACAAGATTCAGAGGGTAGTTTTGGTATGTTAACATCTCTAATTTAAGTCCACAAGATTCAATAGTTCTCCAAACATGTTTAAGCAAAATGGTGCATATGTTTGTTTCAATACTACATTAAAATAAGGTGCATGATAAGATTCAGAGGGTAGTTTTGGTATGTTAACATCTCTAATTTAAGTCCACAAGATTCAATAGTTCTCCAAACATGTTTAAGCAAAATGGTGCATATGTTTGTTTCAATACTACATTAAAATAAGGTGCATGATAAGATTCAGAGGGTAGTTTTGGTATGTTAACATCTCTAATTTAAGTCCACAAGATTCAATAGTTCTCCAAACATGTTTAAGCAAAATGGTGCATATGTTTGTTTCAATACTACATTAAAATAAGGTGCATGATAAGATTCAAAGACCTTCCATGCTTCTTATTCAATTCTTTAAGCATAACATCTAAATGAAAATTGTTGGATTCAAAATGAATTGTGTGTTTTTTTGTTCGAATTATTTGTGGAACTGCATGAAGCTAAAAATTCTCATGACTAATATGATTGGTTTTAGTAGTACATGATCATATGCTGCATTGATGGCTCCCTCTTCACCCAAACCTACATGAGTGATGTGATATAAGTCCAGTAACTTTTGATGTGCTAGGGTCCAGTTTGAAGTCGGCAGATAAAAGTGTCGGTGGCACCACCAAATTGGCCTTCAGTCCAAGGCACGGAGGAAAATCATCCTCATCTAGAAGATCATTAACCGTTCAAGCAGAATATAGGTACTGCTTCTCTTGTTCTTACGTGCTCTACTCGTGCAACTTATACATTGATGATATACCACACTTCTTTTTGTTTGGTTGTCACACTCACTTGTCTTTCTTGTAGATGATATTTTCATCTCAATAAGTTAGTGTGAGCTTTAATTAGACCAAATCAACTCAAAAGAACCTTCCTGCTCCTTCAATTATTTAGTTTTCTCTGACCGTTGTTCTGCAAAACTATAAATCCAATTGATTCCTGAGTGACAGAAGCAAACCTGGCTCTTGCCATTAAATAGGAAAAAGAGTGTTGTAGTTCTGTTTCTTTCATACATTGGTGATCCACCGAGTCTTTCTTGTTAATTGGCAGTGATGGGGGGAGGCCAAGCAATTCAAGCATCTTTGTAGGTGGCTTTCTTTTAGGAGGAGTAATCGTTGGTGCACTTGGTTGTATCTTCGCACCAGAGGTAATCATTTTATGCTAAAACTAACTTATTTTCGGGTAAAATGCAGTAGCACTTGTATTAGTCACTGCCTTTGGTCGTCTTTGCTCGTTAATACTTGTGAATTTGCCACATCACTCATTGATTAATGCCTTCTCCACATTTCATCTCTTGCGGTGTACCTGGGAGCAGTAAGCTGACTGCCCTTTAATTTCTCTTCTACAGATTAGCAAGGCATTAGCCGAAACAGATAGGAAGGACCTCATGAGAAAACTGCCAAAGTTTATATATGATGAAGAAAAAGCATTGGAGGTAAGTTAATATTATGTACGTCTTTTATTAGGAAGCAGTAAGAAAGAGAAATAGTGTCTTTTTTTTGGTCGTGCACGCTCGCGCTTCGTGCGAGTGTAGAGACACACAACAAACACACATATTATATCAGAGTCCTCTATTCTGGCTGATTAAATCCCTCCTTACAAGTGTAATCCTCTAAGTTGTAGCTATCTGTCGCTTTGGAGTCTTCCTTCGTGGATCTTCAAATGGTCCTGAATCCTGATTGCTGAGATTTGGTAGTTTATGTAAGTTCCGTTTTGTAGTCATGAACTTATGAGACGAAGTACCTTGCAAGAGATATAAAGACAAAGGCTAGAGAAGATACTCTGTGACCAGTCATTGCTAAGATTTGAAGCACCCCCAACCAAGGATGTTCTACAGTGTTTTTTGATAACCTTGGTGTCCGGTCCAGCTTACATGCACCTCAATTAAGTCCACGGGATACTTTTCACTTCCCACTAGCATCAAGTACCAAGTACCATGTAATTGGGATAAATGAGAAGAAATCACCTTGTGTTTTTTGTCTCCCCTGGATTTGAACTTGAGACCTCGTGGTTCTCACCCCACTTTATTAACAACTAGGCCACACCTCTGGGTGAAAATGTTCGATTGTTTTAGAACTGAAGTTTTGTTTGATTACTAGTTAAATGATGCTTTGATACTCCCTTTTTAGAAAACTTTCGTTTTAACTATATATAGATGCTACTCTTCGTCTTCTTTTTTTTTGTTAAGTAAGATGTTTCATTACTGGCATCTAGAGATGCAAAACGTACAACAGTAGCAACTGTTAGCTGCAATACAATCTGACTTATTCAACCTCCGGGAGCTAGACGATGTTTTTCTTGGTCTTTAAATGAACCTAGTTAGGTGTTCTATACAAGAAAGTCGTGCTTTCTTCTCCAGGGTTTCTCTCTCTTTGTCAATTGCAAGAAAGAGGAGCAGGCTTGTTGCATCAAACCTATCACCTTTATCTAAGTTTGTTACTTTGCTTGAATCATATAGTTCCGGGAGGATACAAAAAAAGCTGCCGAAGGACTAAAGATCTAAGTTTGAGAAAACAATATTCTTATTCCTGTTTCAAGTTCTTCTAATGTATGCATGCTGTTTCGTCTGCAGAAGCAACGCAAGATACTAACGGAGAAGATAGTCCAATTGAATGATGCTATTGACGACATCTCCAACCAGTTAAGGTCCGGGGATGCAGAAAATGGAGCTGCAGTGAACCTAGATGAAGTTGAAAGTGTTATATAAACAACACTTACAATTGGTTTTCATGTAAATGAATAAACTTTCTG</genome_strand>
        <mrna_strand>GCCGGCCGGCCGCCGTCCTCCGCCGTTGATTCATTTTTCCGGTGACTGTCTTCCACCTCACTTTTACCCACTTCCCCTAACCTTACAGGATGATAGCTATTTCGAACTCTTTGCTTTTATCAACAACCCCTTCTCTGCATTTCACTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCAGTTTGAAGTCGGCAGATAAAAGTGTCGGTGGCACCACCAAATTGGCCTTCAGTCCAAGGCACGGAGGAAAATCATCCTCATCTAGAAGATCATTAACCGTTCAAGCAGAATATAG.............................................................................................................................................................................................................................................................................................................................................................TGATGGGGGGAGGCCAAGCAATTCAAGCATCTTTGTAGGTGGCTTTCTTTTAGGAGGAGTAATCGTTGGTGCACTTGGTTGTATCTTCGCACCAGAG.........................................................................................................................................................................................................ATTAGCAAGGCATTAGCCGAAACAGATAGGAAGGACCTCATGAGAAAACTGCCAAAGTTTATATATGATGAAGAAAAAGCATTGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAACGCAAGATACTAACGGAGAAGATAGTCCAATTGAATGATGCTATTGACGACATCTCCAACCAGTTAAGGTCCGGGGATGCAGAAAATGGAGCTGCAGTGAACCTAGATGAAGTTGAAAGTGTTATATAAACAACACTTACAATTGGTTTTCATGTAAATGAATAAACTTTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E296042" ref_strand="+" ref_description="SGN-E296042 [cLET-27-J21]">
      <seq>gccggccggccgccgtcctccgccgttgattcatttttccggtgactgtcttccacctcacttttacccacttcccctaaccttacaggatgatagctatttcgaactctttgcttttatcaacaaccccttctctgcatttcacttcagggtccagtttgaagtcggcagataaaagtgtcggtggcaccaccaaattggccttcagtccaaggcacggaggaaaatcatcctcatctagaagatcattaaccgttcaagcagaatatagtgatggggggaggccaagcaattcaagcatctttgtaggtggctttcttttaggaggagtaatcgttggtgcacttggttgtatcttcgcaccagagattagcaaggcattagccgaaacagataggaaggacctcatgagaaaactgccaaagtttatatatgatgaagaaaaagcattggagaagcaacgcaagatactaacggagaagatagtccaattgaatgatgctattgacgacatctccaaccagtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="11108" stop="6547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10808" g_stop="10659" g_length="150"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="150" r_length="150" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10658" i_stop="8911" i_length="1748">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.793" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8910" g_stop="8790" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="271" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8789" i_stop="8441" i_length="349">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8440" g_stop="8344" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="368" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8343" i_stop="8143" i_length="201">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8142" g_stop="8056" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="455" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8055" i_stop="6919" i_length="1137">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6918" g_stop="6847" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="527" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E296042" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296042" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10808" e_stop="10659"/>
          <exon e_start="8910" e_stop="8790"/>
          <exon e_start="8440" e_stop="8344"/>
          <exon e_start="8142" e_stop="8056"/>
          <exon e_start="6918" e_stop="6847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGCCGGCCGCCGTCCTCCGCCGTTGATTCATTTTTCCGGTGACTGTCTTCCACCTCACTTTTACCCACTTCCCCTAACCTTACAGGATGATAGCTATTTCGAACTCTTTGCTTTTATCAACAACCCCTTCTCTGCATTTCACTTCAGGTAATTCTTTAAATCTTCTAAAGTTTACATTTTTATTCATGGGGTTTGGATTATTTGTTGTAATTTGCTGTTTTTGATGCACCCTTTAAAGTGATTTCGAATATGGTATGTTGATTAGTTGGTATTTGAGCTTAATTTACCCTGTGTGTTCACTAATCGAGCTTCGTAATAGCATAATTGAATGATTATTTCAAGATTTGTGTTTTGTTCTCTACTGATTTTAGCTTTGATATGCTTTACTCGAGTCGAGGGTGTTAGGTAGGCCTACGCACCACCCTACTCGGACTCCACTTGTGGGATTACACTGTGTTGTTGTTGTTGCTGTTCTCTATTGATTTTAGGTTTGAGATGCTTTAGTTGAACCGAGAATCTACCCTCTCTACCTTCACAAGCATAAGGTAGGTGTAAGGTATGTGTACACATCATACTCCCCGGATATATCCCACTTGTGTGATTACACTTGGTATGTTGTTGTTACCTACTGATTTTAGCGTTGGTAGGGTAATGTCTGCGTACACACCTCCCTTCCTAAACCTCACTTGTGGGATTACGCTGTGTATGTTTTTGCTGTTGTTTACTGATATTAACTGATAAAGTAGTAAACTAACTGCTGCATAGTGTGATTTGTGTCTCGAAAGAAGTTAGCTAAGAACAAAGCAAAATGGCCTCAAGAGCTATAGGCTATTGGATAAAGGATCTTTATTGTTGTAATACCTCCGTTAAGTTGTTTTTTCGCTCTGATCAGAGGCTTGTATGTGATAAGTATGACATATATTGAACATCCAGTTTTAAGGAACACCAATTTGCTTTAGAAACTAGGTGATTTCTTTTGATAGGCTTGTAGTCGGAGTTGTTAGGTACAACTCTAGGTACCTGACTTGGTGGGAGATAGCAGGTATTCGGTGGAATTAGTCACGGTGCACAAGTTGTCACTATCATGAAAGAGATATTCATTTCCTTCATATTATTTGGTGGTGTTTTGCTGGATACGAAGTTTAAGAAATAGAGAAACACTATCCTTAGATTGCACTATCTTCATTTCAACGTTCGTATTTTATCTTTAATGACACACTTATAGGAATGACATGTTTAAGATACAAGATTCAGAGGGTAGTTTTGGTATGTTAACATCTCTAATTTAAGTCCACAAGATTCAATAGTTCTCCAAACATGTTTAAGCAAAATGGTGCATATGTTTGTTTCAATACTACATTAAAATAAGGTGCATGATAAGATTCAGAGGGTAGTTTTGGTATGTTAACATCTCTAATTTAAGTCCACAAGATTCAATAGTTCTCCAAACATGTTTAAGCAAAATGGTGCATATGTTTGTTTCAATACTACATTAAAATAAGGTGCATGATAAGATTCAGAGGGTAGTTTTGGTATGTTAACATCTCTAATTTAAGTCCACAAGATTCAATAGTTCTCCAAACATGTTTAAGCAAAATGGTGCATATGTTTGTTTCAATACTACATTAAAATAAGGTGCATGATAAGATTCAAAGACCTTCCATGCTTCTTATTCAATTCTTTAAGCATAACATCTAAATGAAAATTGTTGGATTCAAAATGAATTGTGTGTTTTTTTGTTCGAATTATTTGTGGAACTGCATGAAGCTAAAAATTCTCATGACTAATATGATTGGTTTTAGTAGTACATGATCATATGCTGCATTGATGGCTCCCTCTTCACCCAAACCTACATGAGTGATGTGATATAAGTCCAGTAACTTTTGATGTGCTAGGGTCCAGTTTGAAGTCGGCAGATAAAAGTGTCGGTGGCACCACCAAATTGGCCTTCAGTCCAAGGCACGGAGGAAAATCATCCTCATCTAGAAGATCATTAACCGTTCAAGCAGAATATAGGTACTGCTTCTCTTGTTCTTACGTGCTCTACTCGTGCAACTTATACATTGATGATATACCACACTTCTTTTTGTTTGGTTGTCACACTCACTTGTCTTTCTTGTAGATGATATTTTCATCTCAATAAGTTAGTGTGAGCTTTAATTAGACCAAATCAACTCAAAAGAACCTTCCTGCTCCTTCAATTATTTAGTTTTCTCTGACCGTTGTTCTGCAAAACTATAAATCCAATTGATTCCTGAGTGACAGAAGCAAACCTGGCTCTTGCCATTAAATAGGAAAAAGAGTGTTGTAGTTCTGTTTCTTTCATACATTGGTGATCCACCGAGTCTTTCTTGTTAATTGGCAGTGATGGGGGGAGGCCAAGCAATTCAAGCATCTTTGTAGGTGGCTTTCTTTTAGGAGGAGTAATCGTTGGTGCACTTGGTTGTATCTTCGCACCAGAGGTAATCATTTTATGCTAAAACTAACTTATTTTCGGGTAAAATGCAGTAGCACTTGTATTAGTCACTGCCTTTGGTCGTCTTTGCTCGTTAATACTTGTGAATTTGCCACATCACTCATTGATTAATGCCTTCTCCACATTTCATCTCTTGCGGTGTACCTGGGAGCAGTAAGCTGACTGCCCTTTAATTTCTCTTCTACAGATTAGCAAGGCATTAGCCGAAACAGATAGGAAGGACCTCATGAGAAAACTGCCAAAGTTTATATATGATGAAGAAAAAGCATTGGAGGTAAGTTAATATTATGTACGTCTTTTATTAGGAAGCAGTAAGAAAGAGAAATAGTGTCTTTTTTTTGGTCGTGCACGCTCGCGCTTCGTGCGAGTGTAGAGACACACAACAAACACACATATTATATCAGAGTCCTCTATTCTGGCTGATTAAATCCCTCCTTACAAGTGTAATCCTCTAAGTTGTAGCTATCTGTCGCTTTGGAGTCTTCCTTCGTGGATCTTCAAATGGTCCTGAATCCTGATTGCTGAGATTTGGTAGTTTATGTAAGTTCCGTTTTGTAGTCATGAACTTATGAGACGAAGTACCTTGCAAGAGATATAAAGACAAAGGCTAGAGAAGATACTCTGTGACCAGTCATTGCTAAGATTTGAAGCACCCCCAACCAAGGATGTTCTACAGTGTTTTTTGATAACCTTGGTGTCCGGTCCAGCTTACATGCACCTCAATTAAGTCCACGGGATACTTTTCACTTCCCACTAGCATCAAGTACCAAGTACCATGTAATTGGGATAAATGAGAAGAAATCACCTTGTGTTTTTTGTCTCCCCTGGATTTGAACTTGAGACCTCGTGGTTCTCACCCCACTTTATTAACAACTAGGCCACACCTCTGGGTGAAAATGTTCGATTGTTTTAGAACTGAAGTTTTGTTTGATTACTAGTTAAATGATGCTTTGATACTCCCTTTTTAGAAAACTTTCGTTTTAACTATATATAGATGCTACTCTTCGTCTTCTTTTTTTTTGTTAAGTAAGATGTTTCATTACTGGCATCTAGAGATGCAAAACGTACAACAGTAGCAACTGTTAGCTGCAATACAATCTGACTTATTCAACCTCCGGGAGCTAGACGATGTTTTTCTTGGTCTTTAAATGAACCTAGTTAGGTGTTCTATACAAGAAAGTCGTGCTTTCTTCTCCAGGGTTTCTCTCTCTTTGTCAATTGCAAGAAAGAGGAGCAGGCTTGTTGCATCAAACCTATCACCTTTATCTAAGTTTGTTACTTTGCTTGAATCATATAGTTCCGGGAGGATACAAAAAAAGCTGCCGAAGGACTAAAGATCTAAGTTTGAGAAAACAATATTCTTATTCCTGTTTCAAGTTCTTCTAATGTATGCATGCTGTTTCGTCTGCAGAAGCAACGCAAGATACTAACGGAGAAGATAGTCCAATTGAATGATGCTATTGACGACATCTCCAACCAGTTA</genome_strand>
        <mrna_strand>GCCGGCCGGCCGCCGTCCTCCGCCGTTGATTCATTTTTCCGGTGACTGTCTTCCACCTCACTTTTACCCACTTCCCCTAACCTTACAGGATGATAGCTATTTCGAACTCTTTGCTTTTATCAACAACCCCTTCTCTGCATTTCACTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCAGTTTGAAGTCGGCAGATAAAAGTGTCGGTGGCACCACCAAATTGGCCTTCAGTCCAAGGCACGGAGGAAAATCATCCTCATCTAGAAGATCATTAACCGTTCAAGCAGAATATAG.............................................................................................................................................................................................................................................................................................................................................................TGATGGGGGGAGGCCAAGCAATTCAAGCATCTTTGTAGGTGGCTTTCTTTTAGGAGGAGTAATCGTTGGTGCACTTGGTTGTATCTTCGCACCAGAG.........................................................................................................................................................................................................ATTAGCAAGGCATTAGCCGAAACAGATAGGAAGGACCTCATGAGAAAACTGCCAAAGTTTATATATGATGAAGAAAAAGCATTGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAACGCAAGATACTAACGGAGAAGATAGTCCAATTGAATGATGCTATTGACGACATCTCCAACCAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E277347" ref_strand="+" ref_description="SGN-E277347 [cLER-3-I7]">
      <seq>tgatatttattatctctcttctctgctctccaactgtcactcttcctacgccggccggccgccgtcctccgccgttgattcatttttccggtgactgtcttccacctcacttttacccacttcccctaaccttacaggatgatagctatttcgaactctttgcttttatcaacaaccccttctctgcatttcacttcagggtccagtttgaagtcggcagataaaagtgtcggtggcaccaccaaattggccttcagtccaaggcacggaggaaaatcatcctcatctagaagatcattaaccgttcaagcagaatatagtgatggggggaggccaagcaattcaagcatctttgtaggtggctttcttttaggaggagtaatcgttggtgcacttggttgtatcttcgcaccagagattagcaaggcattagccgaaacagataggaaggacctcatgagaaaactgccaaagtttatatatgatgaagaaaaagcattggagaagcaacgcaagatactaacggagaagatagtccaattgaatgatgctattgacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="11157" stop="6564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10857" g_stop="10659" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10658" i_stop="8911" i_length="1748">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.793" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="8910" g_stop="8790" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="320" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="8789" i_stop="8441" i_length="349">
            <donor d_prob="0.863" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="8440" g_stop="8344" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="417" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="8343" i_stop="8143" i_length="201">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.858" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="8142" g_stop="8056" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="504" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="8055" i_stop="6919" i_length="1137">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="6918" g_stop="6864" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="559" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E277347" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10857" e_stop="10659"/>
          <exon e_start="8910" e_stop="8790"/>
          <exon e_start="8440" e_stop="8344"/>
          <exon e_start="8142" e_stop="8056"/>
          <exon e_start="6918" e_stop="6864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATATTTATTATCTCTCTTCTCTGCTCTCCAACTGTCGCTCTTCCTACGCCGGCCGGCCGCCGTCCTCCGCCGTTGATTCATTTTTCCGGTGACTGTCTTCCACCTCACTTTTACCCACTTCCCCTAACCTTACAGGATGATAGCTATTTCGAACTCTTTGCTTTTATCAACAACCCCTTCTCTGCATTTCACTTCAGGTAATTCTTTAAATCTTCTAAAGTTTACATTTTTATTCATGGGGTTTGGATTATTTGTTGTAATTTGCTGTTTTTGATGCACCCTTTAAAGTGATTTCGAATATGGTATGTTGATTAGTTGGTATTTGAGCTTAATTTACCCTGTGTGTTCACTAATCGAGCTTCGTAATAGCATAATTGAATGATTATTTCAAGATTTGTGTTTTGTTCTCTACTGATTTTAGCTTTGATATGCTTTACTCGAGTCGAGGGTGTTAGGTAGGCCTACGCACCACCCTACTCGGACTCCACTTGTGGGATTACACTGTGTTGTTGTTGTTGCTGTTCTCTATTGATTTTAGGTTTGAGATGCTTTAGTTGAACCGAGAATCTACCCTCTCTACCTTCACAAGCATAAGGTAGGTGTAAGGTATGTGTACACATCATACTCCCCGGATATATCCCACTTGTGTGATTACACTTGGTATGTTGTTGTTACCTACTGATTTTAGCGTTGGTAGGGTAATGTCTGCGTACACACCTCCCTTCCTAAACCTCACTTGTGGGATTACGCTGTGTATGTTTTTGCTGTTGTTTACTGATATTAACTGATAAAGTAGTAAACTAACTGCTGCATAGTGTGATTTGTGTCTCGAAAGAAGTTAGCTAAGAACAAAGCAAAATGGCCTCAAGAGCTATAGGCTATTGGATAAAGGATCTTTATTGTTGTAATACCTCCGTTAAGTTGTTTTTTCGCTCTGATCAGAGGCTTGTATGTGATAAGTATGACATATATTGAACATCCAGTTTTAAGGAACACCAATTTGCTTTAGAAACTAGGTGATTTCTTTTGATAGGCTTGTAGTCGGAGTTGTTAGGTACAACTCTAGGTACCTGACTTGGTGGGAGATAGCAGGTATTCGGTGGAATTAGTCACGGTGCACAAGTTGTCACTATCATGAAAGAGATATTCATTTCCTTCATATTATTTGGTGGTGTTTTGCTGGATACGAAGTTTAAGAAATAGAGAAACACTATCCTTAGATTGCACTATCTTCATTTCAACGTTCGTATTTTATCTTTAATGACACACTTATAGGAATGACATGTTTAAGATACAAGATTCAGAGGGTAGTTTTGGTATGTTAACATCTCTAATTTAAGTCCACAAGATTCAATAGTTCTCCAAACATGTTTAAGCAAAATGGTGCATATGTTTGTTTCAATACTACATTAAAATAAGGTGCATGATAAGATTCAGAGGGTAGTTTTGGTATGTTAACATCTCTAATTTAAGTCCACAAGATTCAATAGTTCTCCAAACATGTTTAAGCAAAATGGTGCATATGTTTGTTTCAATACTACATTAAAATAAGGTGCATGATAAGATTCAGAGGGTAGTTTTGGTATGTTAACATCTCTAATTTAAGTCCACAAGATTCAATAGTTCTCCAAACATGTTTAAGCAAAATGGTGCATATGTTTGTTTCAATACTACATTAAAATAAGGTGCATGATAAGATTCAAAGACCTTCCATGCTTCTTATTCAATTCTTTAAGCATAACATCTAAATGAAAATTGTTGGATTCAAAATGAATTGTGTGTTTTTTTGTTCGAATTATTTGTGGAACTGCATGAAGCTAAAAATTCTCATGACTAATATGATTGGTTTTAGTAGTACATGATCATATGCTGCATTGATGGCTCCCTCTTCACCCAAACCTACATGAGTGATGTGATATAAGTCCAGTAACTTTTGATGTGCTAGGGTCCAGTTTGAAGTCGGCAGATAAAAGTGTCGGTGGCACCACCAAATTGGCCTTCAGTCCAAGGCACGGAGGAAAATCATCCTCATCTAGAAGATCATTAACCGTTCAAGCAGAATATAGGTACTGCTTCTCTTGTTCTTACGTGCTCTACTCGTGCAACTTATACATTGATGATATACCACACTTCTTTTTGTTTGGTTGTCACACTCACTTGTCTTTCTTGTAGATGATATTTTCATCTCAATAAGTTAGTGTGAGCTTTAATTAGACCAAATCAACTCAAAAGAACCTTCCTGCTCCTTCAATTATTTAGTTTTCTCTGACCGTTGTTCTGCAAAACTATAAATCCAATTGATTCCTGAGTGACAGAAGCAAACCTGGCTCTTGCCATTAAATAGGAAAAAGAGTGTTGTAGTTCTGTTTCTTTCATACATTGGTGATCCACCGAGTCTTTCTTGTTAATTGGCAGTGATGGGGGGAGGCCAAGCAATTCAAGCATCTTTGTAGGTGGCTTTCTTTTAGGAGGAGTAATCGTTGGTGCACTTGGTTGTATCTTCGCACCAGAGGTAATCATTTTATGCTAAAACTAACTTATTTTCGGGTAAAATGCAGTAGCACTTGTATTAGTCACTGCCTTTGGTCGTCTTTGCTCGTTAATACTTGTGAATTTGCCACATCACTCATTGATTAATGCCTTCTCCACATTTCATCTCTTGCGGTGTACCTGGGAGCAGTAAGCTGACTGCCCTTTAATTTCTCTTCTACAGATTAGCAAGGCATTAGCCGAAACAGATAGGAAGGACCTCATGAGAAAACTGCCAAAGTTTATATATGATGAAGAAAAAGCATTGGAGGTAAGTTAATATTATGTACGTCTTTTATTAGGAAGCAGTAAGAAAGAGAAATAGTGTCTTTTTTTTGGTCGTGCACGCTCGCGCTTCGTGCGAGTGTAGAGACACACAACAAACACACATATTATATCAGAGTCCTCTATTCTGGCTGATTAAATCCCTCCTTACAAGTGTAATCCTCTAAGTTGTAGCTATCTGTCGCTTTGGAGTCTTCCTTCGTGGATCTTCAAATGGTCCTGAATCCTGATTGCTGAGATTTGGTAGTTTATGTAAGTTCCGTTTTGTAGTCATGAACTTATGAGACGAAGTACCTTGCAAGAGATATAAAGACAAAGGCTAGAGAAGATACTCTGTGACCAGTCATTGCTAAGATTTGAAGCACCCCCAACCAAGGATGTTCTACAGTGTTTTTTGATAACCTTGGTGTCCGGTCCAGCTTACATGCACCTCAATTAAGTCCACGGGATACTTTTCACTTCCCACTAGCATCAAGTACCAAGTACCATGTAATTGGGATAAATGAGAAGAAATCACCTTGTGTTTTTTGTCTCCCCTGGATTTGAACTTGAGACCTCGTGGTTCTCACCCCACTTTATTAACAACTAGGCCACACCTCTGGGTGAAAATGTTCGATTGTTTTAGAACTGAAGTTTTGTTTGATTACTAGTTAAATGATGCTTTGATACTCCCTTTTTAGAAAACTTTCGTTTTAACTATATATAGATGCTACTCTTCGTCTTCTTTTTTTTTGTTAAGTAAGATGTTTCATTACTGGCATCTAGAGATGCAAAACGTACAACAGTAGCAACTGTTAGCTGCAATACAATCTGACTTATTCAACCTCCGGGAGCTAGACGATGTTTTTCTTGGTCTTTAAATGAACCTAGTTAGGTGTTCTATACAAGAAAGTCGTGCTTTCTTCTCCAGGGTTTCTCTCTCTTTGTCAATTGCAAGAAAGAGGAGCAGGCTTGTTGCATCAAACCTATCACCTTTATCTAAGTTTGTTACTTTGCTTGAATCATATAGTTCCGGGAGGATACAAAAAAAGCTGCCGAAGGACTAAAGATCTAAGTTTGAGAAAACAATATTCTTATTCCTGTTTCAAGTTCTTCTAATGTATGCATGCTGTTTCGTCTGCAGAAGCAACGCAAGATACTAACGGAGAAGATAGTCCAATTGAATGATGCTATTGACG</genome_strand>
        <mrna_strand>TGATATTTATTATCTCTCTTCTCTGCTCTCCAACTGTCACTCTTCCTACGCCGGCCGGCCGCCGTCCTCCGCCGTTGATTCATTTTTCCGGTGACTGTCTTCCACCTCACTTTTACCCACTTCCCCTAACCTTACAGGATGATAGCTATTTCGAACTCTTTGCTTTTATCAACAACCCCTTCTCTGCATTTCACTTCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCCAGTTTGAAGTCGGCAGATAAAAGTGTCGGTGGCACCACCAAATTGGCCTTCAGTCCAAGGCACGGAGGAAAATCATCCTCATCTAGAAGATCATTAACCGTTCAAGCAGAATATAG.............................................................................................................................................................................................................................................................................................................................................................TGATGGGGGGAGGCCAAGCAATTCAAGCATCTTTGTAGGTGGCTTTCTTTTAGGAGGAGTAATCGTTGGTGCACTTGGTTGTATCTTCGCACCAGAG.........................................................................................................................................................................................................ATTAGCAAGGCATTAGCCGAAACAGATAGGAAGGACCTCATGAGAAAACTGCCAAAGTTTATATATGATGAAGAAAAAGCATTGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAACGCAAGATACTAACGGAGAAGATAGTCCAATTGAATGATGCTATTGACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E251518" ref_strand="-" ref_description="SGN-E251518 [cLEG-9-I5]">
      <seq>ggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttccaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14174" stop="4946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13970" g_stop="13960" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="79" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="173" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13522" g_stop="13225" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="471" r_length="298" r_score="0.997"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13224" i_stop="11737" i_length="1488">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="11736" g_stop="11716" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="492" r_length="21" r_score="0.762"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E251518" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251518" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="13970" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13225"/>
          <exon e_start="11736" e_stop="11716"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGTATCTCAGCTTGATTGATTATGTTTGAACAATTTTTTCATTACACAAGAAGATCAAGGAAGGTGAAATAGGTCCTTAAGAATGTAACCTATCGTGTGGGGGAGTTTCACTGATACGACTAGACTATAAGCTTTGACTGTGCCAGAGTATGGGTTATGTTGTTTTACTTGAGTGGAGAATTTATCTGAAATAACATCTCTATCTTTACAAGATCGGGGAAAGAGTTCATATACAACATTCTCTCTAGACTCCACTTGTGAGACTATGATTTATATGTTGTTGTAGTATGAGTTGTGTGCGGTTTGAGATACAGTTTTAAGTTGGGAAACTTGCATATACCATACTAGTTTATGAACTAATTACTAAGTTACACTCTAGTTTGCAATATTACGAGTCTTACCATATTTTGTGCGTCCAGAGACTTATATCTCAGATACATCATGTCAAATTCAGGTGTAATTTTTTTCTAGATACATTTTGTACAAGTGAATTTGTATGTATATGTGATATATAACAAATCTCGCTAGTCTCCCTCCGTTCCGCTTACCACTTTTCTTTGTATATGGTATCCCAAATCACATTAGATCCGTACAGATATATGTATCTAGGTGTGAATCACATGTATTTGGAATATATTAGTATCTCACTCTCCTTCCTCCCTATCTCGCTTGTCTCTTTCCAAATTATAATGTATATAGTATCAAAAATACATGTAATAAATTAAAAGTACAAGTAGTAATAATGTACTTCCTCTGTCCCTATTCAGTTGTCTACTTTAGAAATGACACACATATTAAGATAACAATAATTAGCAAAGTGAAGTTATAATTTTACCCTTGTTAATTATGATTTCAAAAATGATGAATTAAAACTTGGAAACTTTCAAGAAGTTTAAATGAGGGTATAATAGAAAAATCCCTAGCAATACAAAGTGATTGATGTTACTGTTATCCGTTTGTAGACATGTTAAATTGTTGCGGACTTATTAAAATATTTATTTATCGATTGTTATAATTATTAGTTGGGAAAAGGGTCTGATATACCCCTCAACTTTGTCATTTAGAGCTGATATACCCCTTGTTATGAAAGTGGCTCATATATACCCCTACTTGTAAACAAATGGCTCACATATACCATTTTCCTCTAACGGAAATGAAAAAAATAACAATTTTTATTTAAATTTTTATTATTTTTTTCTAAAAAATATAATCTCATATGAGTAAATTTAATCCTTGCCAAACATATTTTTTTTGACTTTTTTTTGTTTCAATGACTAATTTATAATTATTATTTTGATAATCAAATTTATTTGTGTTTCACTAATATTCTTGTAAAACTTATTGTAGATAACCAAATTTTTTCTTCGAATACGAAATTAAATTACAATACACAAAAAATAGTTTAATTTTTTATTCTTTAAACTAAGGAATGAAAGAAAACAACAAAATAAGAATAA</genome_strand>
        <mrna_strand>GGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E734035" ref_strand="+" ref_description="SGN-E734035 [LB11CD11]">
      <seq>gttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttcactttggtgcttggagaacacactctcaatttcaataatatcactttcatttcagtaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14762" stop="12869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14462" g_stop="14138" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="415" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="483" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="484" r_stop="577" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13162" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="938" r_length="361" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E734035" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>938</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734035" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14462" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGTATCTCAGC</genome_strand>
        <mrna_strand>GTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGGAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E351892" ref_strand="+" ref_description="SGN-E351892 [cTOS-8-F23]">
      <seq>tgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgntcactttggtgcttgaagacacactctncatttcataatatcactttcatttcagtaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14558" stop="12869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14258" g_stop="14138" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="211" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="279" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="373" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13162" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="732" r_length="359" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E351892" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>734</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14258" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13162"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGTATCTCAGC</genome_strand>
        <mrna_strand>TGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGNTCACTTTGGTGCTTGAAG-ACACACTCTNCATTTC-ATAATATCACTTTCATTTCAGTAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E714574" ref_strand="+" ref_description="SGN-E714574 [FB11DC11]">
      <seq>catcttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgtgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttcactttggtgcttgaagaacacactctcaatttcaataatatcactttcatttcagtatctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14152" stop="12864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13852" g_stop="13805" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="142" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13522" g_stop="13164" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="501" r_length="359" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E714574" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13852" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGTATCTCA</genome_strand>
        <mrna_strand>CATCTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGTGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGTATCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E234849" ref_strand="-" ref_description="SGN-E234849 [cLEL-6-M6]">
      <seq>aaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttcactttggtgcttgaagaacacactctcaatttcaataatatcactttcatttcagtatctcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="13751" stop="12864"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13451" g_stop="13164" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="288" r_length="288" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="289" polyA_stop="304"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E234849" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E234849" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="13451" e_stop="13164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGTATCTCA</genome_strand>
        <mrna_strand>AAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGTATCTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E744514" ref_strand="+" ref_description="SGN-E744514 [GI|170397]">
      <seq>ctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttcactttggtgcttgaagaacacactctcaatttcaataatatcactttcatttcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17059" stop="12870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16759" g_stop="16713" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="144" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="422" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14138" g_length="777"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="1199" r_length="777" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1200" r_stop="1289" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1290" r_stop="1357" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1358" r_stop="1451" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="13522" g_stop="13170" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1452" r_stop="1804" r_length="353" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E744514" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1804</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744514" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16759" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGT</genome_strand>
        <mrna_strand>CTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E714010" ref_strand="+" ref_description="SGN-E714010 [FB10BB01]">
      <seq>ccctagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtaaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgtttgagtcttgttcactttggtgctttgagaacacactctcaatttcaataatatcactttcatttcagtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14702" stop="12869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14403" g_stop="14138" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="266" r_length="266" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="356" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="424" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="518" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13170" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="519" r_stop="871" r_length="353" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="872" polyA_stop="889"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E714010" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>871</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14403" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATG-TTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGT</genome_strand>
        <mrna_strand>CCCTAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTAAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTTGAG-TCTTGTTCACTTTGGTGCTTTGAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E339523" ref_strand="+" ref_description="SGN-E339523 [cTOE-16-O17]">
      <seq>cagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatngtgagttcttgttcactttggtgcttgaagaacacactctcaatttcaataatatcactttcatttcagtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14521" stop="12869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14221" g_stop="14138" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="174" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="242" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="336" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13170" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="689" r_length="353" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="690" polyA_stop="701"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E339523" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339523" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14221" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGT</genome_strand>
        <mrna_strand>CAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATNGTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E249324" ref_strand="-" ref_description="SGN-E249324 [cLEF-50-K11]">
      <seq>tgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttcactttggtgcttgaagaacacactctcaatttcaataatatcactttcatttcagtaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14463" stop="12869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14163" g_stop="14138" g_length="26"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="116" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="184" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="278" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13170" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="631" r_length="353" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="632" polyA_stop="642"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E249324" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249324" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14163" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGT</genome_strand>
        <mrna_strand>TGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E349302" ref_strand="+" ref_description="SGN-E349302 [cTOS-1-A15]">
      <seq>tgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttcactttggtgcttgaagaacacactctcaatttcaataatatcactttcatttcagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14319" stop="12869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14019" g_stop="13960" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="128" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="222" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13522" g_stop="13170" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="575" r_length="353" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="576" polyA_stop="585"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E349302" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349302" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14019" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGT</genome_strand>
        <mrna_strand>TGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E354457" ref_strand="+" ref_description="SGN-E354457 [cTOS-17-B20]">
      <seq>tgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttcactttggtgcttgaagaacacactctcaatttcaataatatcactttcatttcagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14319" stop="12869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14019" g_stop="13960" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="128" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="222" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13522" g_stop="13170" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="575" r_length="353" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="576" polyA_stop="585"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E354457" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14019" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGT</genome_strand>
        <mrna_strand>TGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E714738" ref_strand="+" ref_description="SGN-E714738 [FB12BB12]">
      <seq>gctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttcactttggtgcttgaagaacacactctcaatttcaataatatcactttcatttcagtanaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14310" stop="12869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14010" g_stop="13960" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="119" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="213" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13522" g_stop="13170" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="566" r_length="353" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="567" polyA_stop="597"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E714738" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714738" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14010" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGT</genome_strand>
        <mrna_strand>GCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E369671" ref_strand="-" ref_description="SGN-E369671 [TUS-25-N2]">
      <seq>attgtgtcattccaaaagaaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacaaatacatcaacaaatgggttgagtctttatccgatccacgagtcactcattagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcaaaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaaactgcaaatgttgaaggaataatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttaaatgtcttgtgtttttactataataatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttcactttggtgcttgaagaacacactctcaatttcaataatatcactttcatttcagtaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14174" stop="12869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13961" g_stop="13960" g_length="2"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="2" r_length="2" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="71" r_length="69" r_score="0.956"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="165" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.579" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13522" g_stop="13170" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="518" r_length="353" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="519" polyA_stop="538"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E369671" ref_strand="-">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369671" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="13961" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAG-AAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGT</genome_strand>
        <mrna_strand>AT.......................................................................................TGTGTCATTCCAAAAGAAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAAATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATTAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAAAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAACTGCAAATGTTGAAGGAATAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTAAATGTCTTGTGTTTTTACTATAATAATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E715521" ref_strand="+" ref_description="SGN-E715521 [FB14CB03]">
      <seq>cctaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttcactttggtgcttgaagaacacactctcaatttcaataatatcactttcatttcagtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14163" stop="12869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13863" g_stop="13805" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="153" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13522" g_stop="13170" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="506" r_length="353" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="507" polyA_stop="516"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E715521" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>506</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13863" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGT</genome_strand>
        <mrna_strand>CCTAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E734956" ref_strand="+" ref_description="SGN-E734956 [LB14AB10]">
      <seq>gaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttcactttggtgcttgaagaacacactctcaatttcaataatatcactttcatttcagtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14157" stop="12869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13857" g_stop="13805" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="147" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13522" g_stop="13170" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="500" r_length="353" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="501" polyA_stop="512"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E734956" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13857" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGT</genome_strand>
        <mrna_strand>GAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E216987" ref_strand="-" ref_description="SGN-E216987 [cLEL-1-A3]">
      <seq>agatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttcactttggtgcttgaagaacacactcccaatttcaataatatcactttcatttcagtaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14124" stop="12869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13824" g_stop="13805" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="114" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13522" g_stop="13170" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="467" r_length="353" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="468" polyA_stop="489"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E216987" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.955" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216987" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="13824" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGT</genome_strand>
        <mrna_strand>AGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCCCAATTTCAATAATATCACTTTCATTTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E274505" ref_strand="-" ref_description="SGN-E274505 [cLEN-11-F23]">
      <seq>agatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttcactttggtgcttgaagaacacactctcaatttcaataatatcactttcatttcagtaaaaaaaaaaaaaaaaaactcgagactagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14124" stop="12869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13824" g_stop="13805" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="114" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13522" g_stop="13170" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="467" r_length="353" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="468" polyA_stop="486"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E274505" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>467</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274505" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="13824" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGT</genome_strand>
        <mrna_strand>AGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E356515" ref_strand="+" ref_description="SGN-E356515 [cTOS-21-G13]">
      <seq>ctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttaaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttcactttggtgcttgaagaacacactctcaatttcaataatatcactttcatttcagtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14017" stop="12869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13811" g_stop="13805" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="101" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13522" g_stop="13170" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="454" r_length="353" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="455" polyA_stop="468"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E356515" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>454</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356515" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13811" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGT</genome_strand>
        <mrna_strand>CTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTAAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E217310" ref_strand="-" ref_description="SGN-E217310 [cLEL-21-H10]">
      <seq>aatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttcactttggtgcttgaagaacacactctcaatttcaataatatcactttcatttcagtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="13994" stop="12869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13694" g_stop="13621" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13522" g_stop="13170" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="427" r_length="353" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="428" polyA_stop="444"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E217310" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217310" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="13694" e_stop="13621"/>
          <exon e_start="13522" e_stop="13170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGT</genome_strand>
        <mrna_strand>AATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E218637" ref_strand="-" ref_description="SGN-E218637 [cLEL-18-L21]">
      <seq>gagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttcactttggtgcttgaagaacacactctcaatttcaataatatcactttcatttcagtaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="13986" stop="12869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13686" g_stop="13621" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13522" g_stop="13170" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="419" r_length="353" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="420" polyA_stop="442"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E218637" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E218637" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="13686" e_stop="13621"/>
          <exon e_start="13522" e_stop="13170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGT</genome_strand>
        <mrna_strand>GAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E204822" ref_strand="+" ref_description="SGN-E204822 [cLEC-14-K12]">
      <seq>agcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttcactttggtgcttgaagaacacactctcaatttcaataatatcactttcatttcagtaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="13947" stop="12869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13647" g_stop="13621" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="0.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13522" g_stop="13170" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="380" r_length="353" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="381" polyA_stop="404"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E204822" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13647" e_stop="13621"/>
          <exon e_start="13522" e_stop="13170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGT</genome_strand>
        <mrna_strand>AGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E217462" ref_strand="-" ref_description="SGN-E217462 [cLEL-21-B20]">
      <seq>cattttagcctaataaaacgcggtgattaaacaaaaccaatctttttcttcgggtgcatacattgcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttcactttggtgcttgaagaacacactctcaatttcaataatatcactttcatttcagtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="13890" stop="12869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13590" g_stop="13170" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="421" r_length="421" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="422" polyA_stop="438"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E217462" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E217462" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="13590" e_stop="13170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGT</genome_strand>
        <mrna_strand>CATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGGGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E290657" ref_strand="+" ref_description="SGN-E290657 [cLET-10-E9]">
      <seq>acaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttcactttggtgcttgaagaacacactctcaatttcaataatatcactttcatttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14174" stop="12871"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13965" g_stop="13960" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="74" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="168" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13522" g_stop="13171" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="520" r_length="352" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E290657" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13965" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13171"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAG</genome_strand>
        <mrna_strand>ACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E249330" ref_strand="-" ref_description="SGN-E249330 [cLEF-50-M15]">
      <seq>aggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttcactttggtgcttgaagaacacactctcaatttcaataatatcactttcatttcaaaaaaaaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14331" stop="12872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14031" g_stop="13960" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="140" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="234" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13522" g_stop="13172" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="585" r_length="351" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E249330" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249330" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14031" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCA</genome_strand>
        <mrna_strand>AGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E553977" ref_strand="-" ref_description="SGN-E553977 [cTSC-2-N13]">
      <seq>gatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttcactttggtgcttgaagaacacactctcaatttcaataatatcactttcatttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14325" stop="12872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14025" g_stop="13960" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="134" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="228" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13522" g_stop="13172" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="579" r_length="351" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E553977" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E553977" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14025" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCA</genome_strand>
        <mrna_strand>GATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E252152" ref_strand="+" ref_description="SGN-E252152 [cLEG-8-M6]">
      <seq>gtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttcactttggtgcttgaagaacacactctcaatttcaataatatcactttcatttcaattaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14302" stop="12870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14002" g_stop="13960" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="111" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="205" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13522" g_stop="13172" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="556" r_length="351" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="560" polyA_stop="578"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E252152" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14002" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCA</genome_strand>
        <mrna_strand>GTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E201202" ref_strand="-" ref_description="SGN-E201202 [cLEC-10-K5]">
      <seq>ggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttcactttggtgcttgaagaacacactctcaatttcaataatatcactttcatttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14174" stop="12872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13970" g_stop="13960" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="79" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="173" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13522" g_stop="13172" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="524" r_length="351" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E201202" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201202" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="13970" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCA</genome_strand>
        <mrna_strand>GGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E713281" ref_strand="+" ref_description="SGN-E713281 [FB08AH05]">
      <seq>agaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttcactttggtgcttgaagaacacactctcaatttcaataatatcactttcatttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14158" stop="12872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13858" g_stop="13805" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="148" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13522" g_stop="13172" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="499" r_length="351" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E713281" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13858" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCA</genome_strand>
        <mrna_strand>AGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E732619" ref_strand="+" ref_description="SGN-E732619 [LB02CG01]">
      <seq>tccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggtttgagttcttctcttcatttccatgattcattttagcctaataaaacgcggtgattaaacaaaaccaatctttttcttcgcgtgcatacattgcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttcactttggtgcttgaagaacacactctcaatttcaataatatcactttcatttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="13972" stop="12872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13672" g_stop="13172" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="502" polyA_stop="511"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E732619" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13672" e_stop="13172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCA</genome_strand>
        <mrna_strand>TCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E301760" ref_strand="+" ref_description="SGN-E301760 [cLEX-9-N16]">
      <seq>acaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttcactttggtgcttgaagaacacactctcaatttcaataatatcactttcatttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="13818" stop="12872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13518" g_stop="13172" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="347" r_length="347" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="348" polyA_stop="358"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E301760" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E301760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13518" e_stop="13172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCA</genome_strand>
        <mrna_strand>ACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E255097" ref_strand="+" ref_description="SGN-E255097 [cLEG-31-N19]">
      <seq>ttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttcactttggtgcttgaagaacacactctcaatttcaataatatcactttcatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14327" stop="12873"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14027" g_stop="13960" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="136" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="137" r_stop="230" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13522" g_stop="13173" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="580" r_length="350" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E255097" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255097" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14027" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13173"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTC</genome_strand>
        <mrna_strand>TTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E210005" ref_strand="+" ref_description="SGN-E210005 [cLEC-40-P19]">
      <seq>atgaaagtgatattattgaaattgagagtgtgtgcttcaagcaccaaagtgaacaagaactcaacataattacataactttagaaagtgaaacattgaacatacaactgtgaacttattcaggttccaacatcattatagtaaaaacacaagacatcgaaattcgatacaaaatacaacattacgattgaaaaagaagtacagtttatagcacaacgcggacgtttttttgcattagtccttcaacatttgcagcttgaaaccatttcaactattttcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="12876" stop="13756"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13176" g_stop="13456" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="281" r_length="281" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E210005" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>281</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13176" e_stop="13456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAAGTGATATTATTGAAATTGAGAGTGTGTTCTTCAAGCACCAAAGTGAACAAGAACTCAACATAATTACATAACTTTAGAAAGTGAAACATTGAACATACAACTGTGAACTTATTCAGGTTCCAACATCATTATAGTAAAAACACAAGACATCGAAATTCGATACAAAATACAACATTACGATTGAAAAAGAAGTACAGTTTATAGCACAACGCGGACGTTTTTTTGCATTAGTCCTTCAACATTTGCAGCTTGAAACCATTTCAACTATTTTCATT</genome_strand>
        <mrna_strand>ATGAAAGTGATATTATTGAAATTGAGAGTGTGTGCTTCAAGCACCAAAGTGAACAAGAACTCAACATAATTACATAACTTTAGAAAGTGAAACATTGAACATACAACTGTGAACTTATTCAGGTTCCAACATCATTATAGTAAAAACACAAGACATCGAAATTCGATACAAAATACAACATTACGATTGAAAAAGAAGTACAGTTTATAGCACAACGCGGACGTTTTTTTGCATTAGTCCTTCAACATTTGCAGCTTGAAACCATTTCAACTATTTTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E267653" ref_strand="+" ref_description="SGN-E267653 [cLEI-12-A15]">
      <seq>atgaaagtgatattattgaaattgagagtgtgttgggcaatctccaaagtgaacaagaactcaacataattacataactttagaaagtgaaacattgaacatacaactgtgaacttattcaggttccaacatcattatagtaaaaacacaagacatcgaaattcgatacaaaatacaacattacgattgaaaaaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="12876" stop="13671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13176" g_stop="13371" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E267653" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>196</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E267653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13176" e_stop="13371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGAAAGTGATATTATTGAAATTGAGAGTGTGTTCTTCAAGCACCAAAGTGAACAAGAACTCAACATAATTACATAACTTTAGAAAGTGAAACATTGAACATACAACTGTGAACTTATTCAGGTTCCAACATCATTATAGTAAAAACACAAGACATCGAAATTCGATACAAAATACAACATTACGATTGAAAAAGA</genome_strand>
        <mrna_strand>ATGAAAGTGATATTATTGAAATTGAGAGTGTGTTGGGCAATCTCCAAAGTGAACAAGAACTCAACATAATTACATAACTTTAGAAAGTGAAACATTGAACATACAACTGTGAACTTATTCAGGTTCCAACATCATTATAGTAAAAACACAAGACATCGAAATTCGATACAAAATACAACATTACGATTGAAAAAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E203495" ref_strand="-" ref_description="SGN-E203495 [cLEC-15-H6]">
      <seq>agatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttcactttggtgcttgaagaacacactctcaatttcaataatatcactttca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14007" stop="12877"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13707" g_stop="13621" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13522" g_stop="13177" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="433" r_length="346" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E203495" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203495" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="13707" e_stop="13621"/>
          <exon e_start="13522" e_stop="13177"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCA</genome_strand>
        <mrna_strand>AGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E293818" ref_strand="+" ref_description="SGN-E293818 [cLET-37-K24]">
      <seq>gaaagtgatattattgaaattgagagtgtgttcttcaagcaccaaagtgaacaagaactcaacataattacataactttagaaagtgaaacattgaacatacaactgtgaacttattcaggttccaacatcattatagtaaaaacacaagacatcgaaattcgataca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="12878" stop="13645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13178" g_stop="13345" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="168" r_length="168" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E293818" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>168</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293818" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13178" e_stop="13345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGTGATATTATTGAAATTGAGAGTGTGTTCTTCAAGCACCAAAGTGAACAAGAACTCAACATAATTACATAACTTTAGAAAGTGAAACATTGAACATACAACTGTGAACTTATTCAGGTTCCAACATCATTATAGTAAAAACACAAGACATCGAAATTCGATACA</genome_strand>
        <mrna_strand>GAAAGTGATATTATTGAAATTGAGAGTGTGTTCTTCAAGCACCAAAGTGAACAAGAACTCAACATAATTACATAACTTTAGAAAGTGAAACATTGAACATACAACTGTGAACTTATTCAGGTTCCAACATCATTATAGTAAAAACACAAGACATCGAAATTCGATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E283079" ref_strand="-" ref_description="SGN-E283079 [cLER-17-N10]">
      <seq>aaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttccctttctaaagttatgtaattatgttgagttcttgttcactttggtgcttgaaaaaaaaaaaaaaaaaaaaaaaaaannactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="13762" stop="12904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13462" g_stop="13208" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="255" r_length="255" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="256" polyA_stop="277"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E283079" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>255</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283079" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="13462" e_stop="13208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAA</genome_strand>
        <mrna_strand>AAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCCCTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E717908" ref_strand="+" ref_description="SGN-E717908 [FC03AD04]">
      <seq>acttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttcactttggtgctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14664" stop="12914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14364" g_stop="14138" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="317" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="385" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="479" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13214" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="788" r_length="309" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E717908" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>788</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717908" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14364" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTT</genome_strand>
        <mrna_strand>ACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E352198" ref_strand="+" ref_description="SGN-E352198 [cTOS-13-B7]">
      <seq>tgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatngtgagttcttgttcactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14558" stop="12920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14258" g_stop="14138" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="211" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="279" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="373" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13220" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="676" r_length="303" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E352198" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14258" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTG</genome_strand>
        <mrna_strand>TGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATNGTGAGTTCTTGTTCACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E352476" ref_strand="+" ref_description="SGN-E352476 [cTOS-9-I21]">
      <seq>tgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagntgtatgttcaatgtttcactttctaaagntatgtaattatgttgagttcttgttcactttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14558" stop="12920"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14258" g_stop="14138" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="211" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="279" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="373" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13220" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="676" r_length="303" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E352476" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>676</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352476" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14258" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13220"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTG</genome_strand>
        <mrna_strand>TGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGNTGTATGTTCAATGTTTCACTTTCTAAAGNTATGTAATTATGTTGAGTTCTTGTTCACTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E350211" ref_strand="+" ref_description="SGN-E350211 [cTOS-4-M22]">
      <seq>gtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14564" stop="12925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14264" g_stop="14138" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="217" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="285" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="379" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13223" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="679" r_length="300" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E350211" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350211" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14264" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACT</genome_strand>
        <mrna_strand>GTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E700241" ref_strand="+" ref_description="SGN-E700241 [FA12CC08]">
      <seq>ggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaaacctgaataagttcacagntgtatgttcaatgtttcacttttctaagttatgtaattatgttgaagtcttgttcaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14821" stop="12925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14521" g_stop="14138" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="474" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="542" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="636" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13225" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="637" r_stop="935" r_length="299" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="936" polyA_stop="949"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E700241" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>934</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700241" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14521" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGG-AACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCA</genome_strand>
        <mrna_strand>GGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAAACCTGAATAAGTTCACAGNTGTATGTTCAATGTTTCACTTTTCTAAGTTATGTAATTATGTTGAAGTCTTGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E734253" ref_strand="+" ref_description="SGN-E734253 [LB12AG04]">
      <seq>tgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttcaaaananaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14618" stop="12925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14318" g_stop="14138" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="271" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="339" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="433" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13225" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="731" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="738" polyA_stop="748"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E734253" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E734253" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14318" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCA</genome_strand>
        <mrna_strand>TGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E350018" ref_strand="+" ref_description="SGN-E350018 [cTOS-4-E18]">
      <seq>ttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14511" stop="12925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14211" g_stop="14138" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="164" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="232" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="326" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13225" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="624" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E350018" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14211" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCA</genome_strand>
        <mrna_strand>TTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E356272" ref_strand="+" ref_description="SGN-E356272 [cTOS-20-N22]">
      <seq>ttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttcaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14511" stop="12925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14211" g_stop="14138" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="164" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="232" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="233" r_stop="326" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13225" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="624" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="625" polyA_stop="635"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E356272" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14211" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCA</genome_strand>
        <mrna_strand>TTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E257084" ref_strand="-" ref_description="SGN-E257084 [cLEG-44-N1]">
      <seq>catcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttcaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14479" stop="12925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14179" g_stop="14138" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="132" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="200" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="294" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13225" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="592" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="593" polyA_stop="613"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E257084" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257084" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14179" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCA</genome_strand>
        <mrna_strand>CATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E732865" ref_strand="+" ref_description="SGN-E732865 [LB03BD09]">
      <seq>actatatgttgcaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14363" stop="12925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14063" g_stop="13960" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="172" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="266" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13522" g_stop="13225" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="564" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="565" polyA_stop="574"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E732865" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14063" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCA</genome_strand>
        <mrna_strand>ACTATATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E732171" ref_strand="+" ref_description="SGN-E732171 [LB01BH04]">
      <seq>gagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14307" stop="12925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14007" g_stop="13960" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="116" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="210" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13522" g_stop="13225" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="508" r_length="298" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E732171" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E732171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14007" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCA</genome_strand>
        <mrna_strand>GAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E704616" ref_strand="+" ref_description="SGN-E704616 [FA24DB04]">
      <seq>agagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14654" stop="12929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14354" g_stop="14138" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="307" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="308" r_stop="375" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="469" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13229" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="763" r_length="294" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E704616" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14354" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTG</genome_strand>
        <mrna_strand>AGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E713542" ref_strand="+" ref_description="SGN-E713542 [FB08DF11]">
      <seq>cctgacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatggtgagttcttggtcaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14732" stop="12925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14435" g_stop="14138" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="388" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="389" r_stop="456" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="550" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13230" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="843" r_length="293" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="848" polyA_stop="870"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E713542" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>843</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E713542" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14435" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTT</genome_strand>
        <mrna_strand>CCTGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGGTGAGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E350101" ref_strand="+" ref_description="SGN-E350101 [cTOS-4-H4]">
      <seq>gtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaaatagttcacagttgtatgttcaatgtttcactttctaaagttatgtatttatgttgagttcttgttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14564" stop="12925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14264" g_stop="14138" g_length="127"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="217" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="285" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="379" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13230" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="672" r_length="293" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="676" polyA_stop="685"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E350101" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E350101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14264" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTT</genome_strand>
        <mrna_strand>GTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAAATAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTATTTATGTTGAGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E249321" ref_strand="-" ref_description="SGN-E249321 [cLEF-50-I15]">
      <seq>ggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgagttcttgttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14470" stop="12925"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14170" g_stop="14138" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="123" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="191" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="285" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13230" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="578" r_length="293" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E249321" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249321" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14170" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13230"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTT</genome_strand>
        <mrna_strand>GGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E353705" ref_strand="+" ref_description="SGN-E353705 [cTOS-10-E3]">
      <seq>tgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctatnaactgtacttctttttcaatcgtaatggtgtattttgtatcgaaattcgatngtctgtggttttactataatgatngtggaacccctgatagttcacagttgtatggtcaatgtttcacttttctaagtatgtaatttatgttgagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14558" stop="12934"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14258" g_stop="14138" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="211" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="279" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="373" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13233" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="663" r_length="290" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E353705" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353705" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14258" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13233"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGAT-GTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAA-TTATGTTGAGTT</genome_strand>
        <mrna_strand>TGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATNAACTGTACTTCTTTTTCAATCGTAATGGTGTATTTTGTATCGAAATTCGATNGTC-TGTGGTTTTACTATAATGATNGTGGAACCCCTGATAGTTCACAGTTGTATGGTCAATGTTTCACTTTTCTAAG-TATGTAATTTATGTTGAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E285193" ref_strand="+" ref_description="SGN-E285193 [cLER-20-H3]">
      <seq>catcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14479" stop="12935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14179" g_stop="14138" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="132" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="200" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="201" r_stop="294" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13235" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="582" r_length="288" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E285193" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E285193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14179" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAG</genome_strand>
        <mrna_strand>CATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E349316" ref_strand="+" ref_description="SGN-E349316 [cTOS-1-K13]">
      <seq>gcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14566" stop="12936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14266" g_stop="14138" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="219" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="287" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="381" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13236" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="668" r_length="287" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E349316" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14266" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGA</genome_strand>
        <mrna_strand>GCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E353404" ref_strand="+" ref_description="SGN-E353404 [cTOS-15-N19]">
      <seq>tgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttgggacctgaataagttcacagttgtatgttcaatgtttcactttctaagttatgtaattatgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14558" stop="12936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14258" g_stop="14138" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="211" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="279" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="373" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13236" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="659" r_length="286" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E353404" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353404" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14258" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGA</genome_strand>
        <mrna_strand>TGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGGACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCT-AAGTTATGTAATTATGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E349345" ref_strand="+" ref_description="SGN-E349345 [cTOS-1-E6]">
      <seq>tgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgaaaaaaaaaaaaaaanaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14339" stop="12936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14039" g_stop="13960" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="148" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="242" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13522" g_stop="13236" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="529" r_length="287" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="530" polyA_stop="553"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E349345" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14039" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGA</genome_strand>
        <mrna_strand>TGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E355246" ref_strand="+" ref_description="SGN-E355246 [cTOS-18-M2]">
      <seq>tgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatgttgaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14339" stop="12936"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14039" g_stop="13960" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="148" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="242" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13522" g_stop="13236" g_length="287"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="529" r_length="287" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E355246" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14039" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13236"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGA</genome_strand>
        <mrna_strand>TGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E290246" ref_strand="+" ref_description="SGN-E290246 [cLET-5-D21]">
      <seq>aggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatntcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagntgtatgttcaatgtttcactttctaaaagtatgtaattaatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14351" stop="12939"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14051" g_stop="13960" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="160" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="254" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13522" g_stop="13237" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="540" r_length="286" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E290246" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14051" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13237"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTG</genome_strand>
        <mrna_strand>AGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATNTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGNTGTATGTTCAATGTTTCACTTTCTAAAAGTATGTAATTAATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E255627" ref_strand="+" ref_description="SGN-E255627 [cLEG-36-F21]">
      <seq>gcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaagctgacaagtcctgtggtcagaaagtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14503" stop="12940"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14204" g_stop="14138" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="157" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="225" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="319" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.579" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13240" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="602" r_length="283" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E255627" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255627" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14204" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATG</genome_strand>
        <mrna_strand>GCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAA..................................................................................................GCTGACAAGTCCTGTGGTCAGAAAGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E349172" ref_strand="+" ref_description="SGN-E349172 [cTOS-2-A8]">
      <seq>tgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaagttatgtaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14339" stop="12943"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14039" g_stop="13960" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="148" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="242" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13522" g_stop="13243" g_length="280"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="522" r_length="280" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E349172" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E349172" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14039" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13243"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATT</genome_strand>
        <mrna_strand>TGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E712577" ref_strand="+" ref_description="SGN-E712577 [FB05AH12]">
      <seq>catgtacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgtttcactttctaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14459" stop="12954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14159" g_stop="14138" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="0.909"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="113" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="181" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="275" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13254" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="276" r_stop="544" r_length="269" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="545" polyA_stop="555"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E712577" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14159" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATG-ACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAA</genome_strand>
        <mrna_strand>CATGTACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E352995" ref_strand="+" ref_description="SGN-E352995 [cTOS-14-E8]">
      <seq>agctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacggatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttcttttttcatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatngtggaacctgaataagttcacagttgtatgttcaatgtttcactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14520" stop="12960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14220" g_stop="14138" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="173" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="241" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="335" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13260" g_length="263"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="598" r_length="263" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E352995" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14220" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTT</genome_strand>
        <mrna_strand>AGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACGGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTTCATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATNGTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E335556" ref_strand="+" ref_description="SGN-E335556 [cTOE-2-L7]">
      <seq>attgtcccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgcctgatacctcagagacaccgtattggaccaaactatatgccagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgncccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtccttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttcaatgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14620" stop="12965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14320" g_stop="14138" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="0.956"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="277" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="345" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="439" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13265" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="699" r_length="260" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E335556" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14320" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13265"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGT-CCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATG-CTGATA-CTCAGAGACACCGTATTGGACCAAACTATATG-CAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGT-CCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGT-CTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTT</genome_strand>
        <mrna_strand>ATTGTCCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCCTGATACCTCAGAGACACCGTATTGGACCAAACTATATGCCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGNCCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E270403" ref_strand="+" ref_description="SGN-E270403 [cLEM-1-P18]">
      <seq>tttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtatgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14341" stop="12972"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14041" g_stop="13960" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="150" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="244" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13522" g_stop="13272" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="495" r_length="251" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E270403" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E270403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14041" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13272"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTC</genome_strand>
        <mrna_strand>TTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E309758" ref_strand="+" ref_description="SGN-E309758 [cLEY-26-D16]">
      <seq>tcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttcacagttgtnaaanaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14480" stop="12978"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14180" g_stop="14138" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="133" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="201" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="202" r_stop="295" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13278" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="540" r_length="245" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E309758" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14180" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGT</genome_strand>
        <mrna_strand>TCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E239127" ref_strand="-" ref_description="SGN-E239127 [cLEL-9-D2]">
      <seq>tccccgagtcactcatagaattcgcagcatatggataacaaacttgtctccggctgacaagtcctgtggtcaaaaggtcacttctcgtctcactgtgaagcctacaatgtgcaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggcctaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttccatcgtaatgttgtattttgtatcacatttcgatgtcttgtgtttttactataatgatgttggaacctgaataagttccccgttgtaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="13972" stop="12977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13672" g_stop="13621" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="0.865"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="0.86"/>
            <acceptor a_prob="0.579" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13522" g_stop="13278" g_length="245"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="297" r_length="245" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="298" polyA_stop="315"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E239127" ref_strand="-">
        <total_alignment_score>0.946</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239127" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="13672" e_stop="13621"/>
          <exon e_start="13522" e_stop="13278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGT</genome_strand>
        <mrna_strand>TCCCCGAGTCACTCATAGAATTCGCAGCATATGGATAACAAACTTGTCTCCG..................................................................................................GCTGACAAGTCCTGTGGTCAAAAGGTCACTTCTCGTCTCACTGTGAAGCCTACAATGTGCAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGCCTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCCATCGTAATGTTGTATTTTGTATCACATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCCCCGTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E239214" ref_strand="-" ref_description="SGN-E239214 [cLEL-9-D2]">
      <seq>tcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgtcggaacctgaataagttcncagttgataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14121" stop="12977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13821" g_stop="13805" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="0.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="111" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13522" g_stop="13280" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="354" r_length="243" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="356" polyA_stop="375"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E239214" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.944" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239214" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="13821" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13280"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTT</genome_strand>
        <mrna_strand>TCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTCGGAACCTGAATAAGTTCNCAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E238911" ref_strand="-" ref_description="SGN-E238911 [cLEL-9-P11]">
      <seq>gtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggtttgagttcttctcttcatttccatgattcattttagcctaataaaacgcggtgattaaacaaaacccaatctttttcttcgcgtgcatacattgcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataaccatgttggaacctgaataagttcaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="13984" stop="12983"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13684" g_stop="13283" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="403" r_length="403" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="404" polyA_stop="420"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E238911" ref_strand="-">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238911" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="13684" e_stop="13283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAA-CCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACA</genome_strand>
        <mrna_strand>GTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAACCATGTTGGAACCTGAATAAGTTCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E239107" ref_strand="-" ref_description="SGN-E239107 [cLEL-9-P23]">
      <seq>gcttctcgtctccctgtaaagcctccaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgctaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgcacttctttttcaatcgtaatgttgtattttgtatcgaatttcaccgtcctgtgtttttacaatacccctgttggaacctgaataagttcgtaaaaaaataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="13795" stop="12986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13495" g_stop="13283" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="213" r_length="213" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="214" polyA_stop="230"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E239107" ref_strand="-">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>213</cumulative_length_of_scored_exons>
        <coverage percentage="0.926" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239107" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="13495" e_stop="13283"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACA</genome_strand>
        <mrna_strand>GCTTCTCGTCTCCCTGTAAAGCCTCCAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCTAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGCACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCACCGTCCTGTGTTTTTACAATACCCCTGTTGGAACCTGAATAAGTTCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E352706" ref_strand="+" ref_description="SGN-E352706 [cTOS-11-D17]">
      <seq>tgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14558" stop="12999"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14258" g_stop="14138" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="211" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="279" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="373" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13299" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="597" r_length="224" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E352706" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14258" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13299"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAA</genome_strand>
        <mrna_strand>TGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E211396" ref_strand="+" ref_description="SGN-E211396 [cLEC-67-O11]">
      <seq>agctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgttgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14520" stop="13000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14220" g_stop="14138" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="173" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="241" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="242" r_stop="335" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13300" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="558" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E211396" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14220" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGA</genome_strand>
        <mrna_strand>AGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E286721" ref_strand="+" ref_description="SGN-E286721 [cLES-14-H9]">
      <seq>tatatgcagcttccagttaatgctccgatttgtggtcatcacaacaatcatcgcgagggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcagaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14527" stop="13003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14227" g_stop="14138" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="180" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="248" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="342" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13303" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="562" r_length="220" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E286721" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E286721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14227" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTT</genome_strand>
        <mrna_strand>TATATGCAGCTTCCAGTTAATGCTCCGATTTGTGGTCATCACAACAATCATCGCGAGGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAGAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E715065" ref_strand="+" ref_description="SGN-E715065 [FB13AH11]">
      <seq>cttttctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgtttttactataatgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14747" stop="13004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14451" g_stop="14138" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="404" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="472" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="566" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13304" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="785" r_length="219" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E715065" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>785</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E715065" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14451" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13304"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGT</genome_strand>
        <mrna_strand>CTTTTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E379895" ref_strand="-" ref_description="SGN-E379895 [TUS-3-N4]">
      <seq>gcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaatgttgtattttgtatcgaatttcgatgtcttgtgaattactataatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14656" stop="13006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14356" g_stop="14138" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="219" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="309" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="377" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="471" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13306" g_length="217"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="687" r_length="216" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E379895" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379895" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="14356" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGAT</genome_strand>
        <mrna_strand>GCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTG-AATTACTATAATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E267896" ref_strand="+" ref_description="SGN-E267896 [cLEI-12-L17]">
      <seq>cagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttctttttcaatcgtaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14581" stop="13055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14281" g_stop="14138" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="234" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="302" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="396" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13355" g_length="168"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="564" r_length="168" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E267896" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14281" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAAT</genome_strand>
        <mrna_strand>CAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E702178" ref_strand="+" ref_description="SGN-E702178 [FA18AA10]">
      <seq>aagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtcccgcgtgtgctataaactgtacttctttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14961" stop="13064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14661" g_stop="14138" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="614" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="615" r_stop="682" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="683" r_stop="776" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13364" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="777" r_stop="935" r_length="159" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E702178" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>935</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702178" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14661" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTC</genome_strand>
        <mrna_strand>AAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCCGCGTGTGCTATAAACTGTACTTCTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E707267" ref_strand="+" ref_description="SGN-E707267 [FA32CB02]">
      <seq>gtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatccttagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggttttcagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgctataaactgtacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14941" stop="13070"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14641" g_stop="14138" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="594" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="662" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="756" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13370" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="757" r_stop="909" r_length="153" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E707267" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>909</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14641" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13370"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTC</genome_strand>
        <mrna_strand>GTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTTAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTTCAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E209798" ref_strand="+" ref_description="SGN-E209798 [cLEC-52-P9]">
      <seq>acaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgttgtgcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14645" stop="13083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14345" g_stop="14138" g_length="208"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="298" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="366" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="460" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13383" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="461" r_stop="600" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E209798" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14345" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13383"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTA</genome_strand>
        <mrna_strand>ACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E296558" ref_strand="+" ref_description="SGN-E296558 [cLET-19-L8]">
      <seq>acaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatgcaaaaaaacgtccgcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14174" stop="13090"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13965" g_stop="13960" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="74" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="168" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13522" g_stop="13390" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="169" r_stop="301" r_length="133" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E296558" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13965" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13390"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGT</genome_strand>
        <mrna_strand>ACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E296412" ref_strand="+" ref_description="SGN-E296412 [cLET-19-J8]">
      <seq>aacaggcatgggagaggtacagatcatgggaacctgacaggctatacagatacatcaacaaatgggttgagtgtttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgactcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacactgtgaaaaatcaatgaaaatagttgaaatggttgcaagctgcaaatgttgaacgactaatgcagaaaaacgtcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14144" stop="13094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13844" g_stop="13805" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="134" r_length="94" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13522" g_stop="13394" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="263" r_length="129" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E296412" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E296412" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13844" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCC</genome_strand>
        <mrna_strand>AACAGGCATGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCTATACAGATACATCAACAAATGGGTTGAGTGTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGACTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACACTGTGAAAAATCAATGAAAATAGTTGAAATGGTTGCAAGCTGCAAATGTTGAACGACTAATGCAGAAAAACGTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E357638" ref_strand="+" ref_description="SGN-E357638 [cTOS-24-M3]">
      <seq>tgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgaaattcccagcatatggatatcatacttgtctcagggtgaccaatcctgtgggcagaaaggcgcttctcctctcactgggaagcctaccatgggaaaaatccatgaaaatagttgaaatgggttccagcttccaatggtgaaaggattattgcaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14339" stop="13100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14039" g_stop="13960" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="148" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="242" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="0.96"/>
            <acceptor a_prob="0.579" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13522" g_stop="13400" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="366" r_length="124" r_score="0.837"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E357638" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>365</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14039" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTG-AAGGACTAATGCAAAAAA</genome_strand>
        <mrna_strand>TGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAAATTCCCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GGTGACCAATCCTGTGGGCAGAAAGGCGCTTCTCCTCTCACTGGGAAGCCTACCATGGGAAAAATCCATGAAAATAGTTGAAATGGGTTCCAGCTTCCAATGGTGAAAGGATTATTGCAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E259320" ref_strand="+" ref_description="SGN-E259320 [cLEG-43-K3]">
      <seq>tcgcgtttaaccctggacatattgtcccctggtatttactattccgaggataagccttctccagactaggatattcgcgtatgcctgatactcagagacacccgtattggacccaaactatatgccagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgcctatgaaccatgacaccatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagccagtaccccgattccttcttgtgtcttgaatggaaggcgtaccaaattgtgtcattccgaaagaaaaccaaccttcaaacaggcaggggagaggtaccagatcatgggaaccctgaccaggcaagacagataccatcaaccaaatgggttgagtctttatcccatccaccgagtcactcatgagattcgcagcatatggatatcataccttgtctcaggcctgaccagtccctgggtcagaaggtcgcttctcgtctcactgtgaagccctcaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggactaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14640" stop="13107"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14340" g_stop="14138" g_length="203"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="0.911"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="0.87"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="305" r_length="93" r_score="0.933"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="0.87"/>
            <acceptor a_prob="0.998" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="378" r_length="73" r_score="0.853"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="0.83"/>
            <acceptor a_prob="0.990" a_score="0.85"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="476" r_length="98" r_score="0.904"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="0.92"/>
            <acceptor a_prob="0.579" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13407" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="477" r_stop="593" r_length="117" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E259320" ref_strand="+">
        <total_alignment_score>0.911</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14340" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13407"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCGTTTAACCCTGGACATATTGT-CCCTGGTATTTACTATTCCGAGGATAAG-CTTCTCCAGACTAGGATATTCGCGTATGC-TGATACTCAGAGACA-CCGTATTGGA-CCAAACTATATG-CAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTG-CTATGAA-CATGACA-CATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAG-CAGTA-CCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTA-CAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAA-CAA-CTTCAAACAGGCAGGGGAGAGGTA-CAGATCATGGGAA-CCTGA-CAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATA-CATCAA-CAAATGGGTTGAGTCTTTATCCGATCCA-CGAGTCACTCATGAGATTCGCAGCATATGGATATCATA-CTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGG-CTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATG</genome_strand>
        <mrna_strand>TCGCGTTTAACCCTGGACATATTGTCCCCTGGTATTTACTATTCCGAGGATAAGCCTTCTCCAGACTAGGATATTCGCGTATGCCTGATACTCAGAGACACCCGTATTGGACCCAAACTATATGCCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCCTATGAACCATGACACCATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCCAGTACCCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACCAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACCAACCTTCAAACAGGCAGGGGAGAGGTACCAGATCATGGGAACCCTGACCAG..........................................................................................GCAAGACAGATACCATCAACCAAATGGGTTGAGTCTTTATCCCATCCACCGAGTCACTCATGAGATTCGCAGCATATGGATATCATACCTTGTCTCAG..................................................................................................GCCTGACCAGTCCCTGGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCCTCAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E704529" ref_strand="+" ref_description="SGN-E704529 [FA24CB11]">
      <seq>aaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaagtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttgaaggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14908" stop="13111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14608" g_stop="14138" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="471" r_length="471" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="561" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="562" r_stop="629" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="630" r_stop="723" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13411" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="835" r_length="112" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E704529" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>835</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14608" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACT</genome_strand>
        <mrna_strand>AAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAAGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E256039" ref_strand="+" ref_description="SGN-E256039 [cLEG-35-P7]">
      <seq>agcactacgatatccgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctgtgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcactacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcagggcatatggaccgatcatggtaacctgactcgcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcacagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaatggtttcaagctgcaaatgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14580" stop="13118"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14280" g_stop="14138" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="234" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="302" r_length="68" r_score="0.882"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="0.84"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="396" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13418" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="501" r_length="105" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E256039" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14280" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13418"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AG-ACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTG</genome_strand>
        <mrna_strand>AGCACTACGATATCCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTGTGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCACTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGCATATGGACCGATCATGGTAACCTGACTC..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCACAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E215072" ref_strand="+" ref_description="SGN-E215072 [cLEC-78-M18]">
      <seq>ccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaaatcatgaaaatagttgaaatggtttcaagctgcaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14701" stop="13123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14401" g_stop="14138" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="354" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="422" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="516" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13423" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="616" r_length="100" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E215072" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14401" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13423"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAA</genome_strand>
        <mrna_strand>CCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAAATCATGAAAATAGTTGAAATGGTTTCAAGCTGCAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E338071" ref_strand="+" ref_description="SGN-E338071 [cTOE-14-N8]">
      <seq>ttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14662" stop="13139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14362" g_stop="14138" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="225" r_length="225" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="226" r_stop="315" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="383" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="477" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13439" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="561" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E338071" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>561</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338071" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14362" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAAT</genome_strand>
        <mrna_strand>TTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E228094" ref_strand="+" ref_description="SGN-E228094 [cLED-2-J21]">
      <seq>acatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14624" stop="13139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14324" g_stop="14138" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="277" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="345" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="439" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13439" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="523" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E228094" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228094" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14324" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAAT</genome_strand>
        <mrna_strand>ACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E267946" ref_strand="+" ref_description="SGN-E267946 [cLEI-12-N8]">
      <seq>aaccctggacatattgtccctggtatttactattgcgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaatagttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14632" stop="13140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14332" g_stop="14138" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="285" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="353" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="447" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13440" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="530" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E267946" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14332" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAA</genome_strand>
        <mrna_strand>AACCCTGGACATATTGTCCCTGGTATTTACTATTGCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E252833" ref_strand="+" ref_description="SGN-E252833 [cLEG-16-C10]">
      <seq>acatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14731" stop="13149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14431" g_stop="14138" g_length="294"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="294" r_length="294" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="384" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="452" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="453" r_stop="546" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13449" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="620" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E252833" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14431" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAA</genome_strand>
        <mrna_strand>ACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E209966" ref_strand="+" ref_description="SGN-E209966 [cLEC-40-K1]">
      <seq>tgatcccagtcggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaagtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14706" stop="13150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14406" g_stop="14138" g_length="269"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="269" r_length="269" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="359" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="427" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="521" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13450" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="594" r_length="73" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E209966" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14406" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAA</genome_strand>
        <mrna_strand>TGATCCCAGTCGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAAGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E255827" ref_strand="+" ref_description="SGN-E255827 [cLEG-35-O9]">
      <seq>tgatacctcagagacacccgtattggaccaaactatatgcagcttccagttaatgccttcccaagtgtggtcatcaccaacaatcatcgcgatggtgctatgaacatgacaccatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtaccaaattgtgtcattccgaaagaaaacaacttcaaaccggccaggggagaggtccagatcatgggaacctgaccaggcaagacagatacatcaacaaatgggttgagtctttatcccatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgaccagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14558" stop="13151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14258" g_stop="14138" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="127" r_length="127" r_score="0.893"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="218" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="288" r_length="70" r_score="0.912"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="0.88"/>
            <acceptor a_prob="0.990" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="382" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13451" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="454" r_length="72" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E255827" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255827" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14258" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13451"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATA-CTCAGAGACAC-CGTATTGGACCAAACTATATGCAGCTCCCAGTTAATG-C-TCCCAAGTGTGGTCATCA-CAACAATCATCGCGATGGTGCTATGAACATGACA-CATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTA-CAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGG-CAGGGGAGAGGTACAGATCATGGGAACCTGA-CAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAA</genome_strand>
        <mrna_strand>TGATACCTCAGAGACACCCGTATTGGACCAAACTATATGCAGCTTCCAGTTAATGCCTTCCCAAGTGTGGTCATCACCAACAATCATCGCGATGGTGCTATGAACATGACACCATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACCAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACCGGCCAGGGGAGAGGTCCAGATCATGGGAACCTGACCAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCCATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACCAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E720449" ref_strand="+" ref_description="SGN-E720449 [FC10DD06]">
      <seq>aatcggccgaattggaaagcacattatgtgaatttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaaaatcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14955" stop="13154"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14669" g_stop="14138" g_length="532"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="532" r_stop="621" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="689" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="690" r_stop="783" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13454" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="784" r_stop="852" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E720449" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720449" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14669" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAAT</genome_strand>
        <mrna_strand>AATCGGCCGA-ATTGGAAAGCACATTATGTGAATTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E708123" ref_strand="+" ref_description="SGN-E708123 [FA34DF08]">
      <seq>cgatggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgacaagtcctgtggtcagaaggtcgcttctcgtctcactgtgaagcctacaatgtgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14998" stop="13161"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14699" g_stop="14138" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="562" r_length="562" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="652" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="653" r_stop="720" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="721" r_stop="814" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13461" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="815" r_stop="876" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E708123" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E708123" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14699" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13461"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAA</genome_strand>
        <mrna_strand>CGATGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E248231" ref_strand="+" ref_description="SGN-E248231 [cLEF-55-G3]">
      <seq>tggtatttactattccgaggataagcttctccagactaagatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaagctgacaagtcctgtggtcagaaagtcgcttctcgtctcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14612" stop="13182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14312" g_stop="14138" g_length="175"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="175" r_length="175" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="265" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="333" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="427" r_length="94" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="0.98"/>
            <acceptor a_prob="0.579" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13482" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="468" r_length="41" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E248231" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248231" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14312" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCAC</genome_strand>
        <mrna_strand>TGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAAGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAA..................................................................................................GCTGACAAGTCCTGTGGTCAGAAAGTCGCTTCTCGTCTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E253746" ref_strand="+" ref_description="SGN-E253746 [cLEG-32-C16]">
      <seq>caatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14787" stop="13315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14487" g_stop="14138" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="440" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="508" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="602" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13516" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="609" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E253746" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>609</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14487" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACA</genome_strand>
        <mrna_strand>CAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E235922" ref_strand="+" ref_description="SGN-E235922 [cLED-16-P19]">
      <seq>acatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14624" stop="13315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14324" g_stop="14138" g_length="187"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="187" r_length="187" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="188" r_stop="277" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="345" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="439" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13516" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="446" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E235922" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E235922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14324" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACA</genome_strand>
        <mrna_strand>ACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E728464" ref_strand="+" ref_description="SGN-E728464 [LA17DF06]">
      <seq>gtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14941" stop="13315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14641" g_stop="14138" g_length="504"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="504" r_length="504" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="594" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="662" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="756" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13518" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="757" r_stop="761" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E728464" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728464" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14641" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGA</genome_strand>
        <mrna_strand>GTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E274205" ref_strand="+" ref_description="SGN-E274205 [cLEN-8-H6]">
      <seq>tattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgacctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaactgcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14602" stop="13315"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14302" g_stop="14138" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="255" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="323" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="417" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98">
            <donor d_prob="0.971" d_score="1.00"/>
            <acceptor a_prob="0.579" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="13522" g_stop="13518" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="422" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E274205" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14302" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
          <exon e_start="13522" e_stop="13518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGA</genome_strand>
        <mrna_strand>TATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGACCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTGCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG..................................................................................................GCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E213070" ref_strand="+" ref_description="SGN-E213070 [cLEC-72-B10]">
      <seq>agctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatgggtgctatgaacatgacacatcgcgatgaagaggtggattattgcccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattcccttctgtgtcttgaatggaagcgtacaaattgtgtcattccgaaagaaacaacttcaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctcaggctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14802" stop="13318"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14502" g_stop="14138" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="366" r_length="366" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="455" r_length="89" r_score="0.933"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="521" r_length="66" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13621" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="522" r_stop="615" r_length="94" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E213070" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14502" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13621"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGAT-GGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG</genome_strand>
        <mrna_strand>AGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTGCCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCCTTCTGTGTCTTGAATGGAA-GCGTACAAAT.......................................................................................TGTGTCATTCCGAAAG-AAACAACTTC-AACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E258923" ref_strand="+" ref_description="SGN-E258923 [cLEG-41-B9]">
      <seq>ccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14582" stop="13323"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14282" g_stop="14138" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="145" r_length="145" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="235" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="303" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13623" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="395" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E258923" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258923" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14282" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13623"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTC</genome_strand>
        <mrna_strand>CCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E263199" ref_strand="+" ref_description="SGN-E263199 [cLEG-62-H11]">
      <seq>ggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14928" stop="13324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14628" g_stop="14138" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="581" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="582" r_stop="648" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13624" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="649" r_stop="739" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E263199" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263199" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14628" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCT</genome_strand>
        <mrna_strand>GGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAG-AAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E214984" ref_strand="+" ref_description="SGN-E214984 [cLEC-78-L18]">
      <seq>ccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14701" stop="13324"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14401" g_stop="14138" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="264" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="354" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="422" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13624" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="513" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E214984" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14401" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13624"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCT</genome_strand>
        <mrna_strand>CCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E257817" ref_strand="+" ref_description="SGN-E257817 [cLEG-39-C6]">
      <seq>tcgattttgatcctctggatgcaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14760" stop="13325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14460" g_stop="14138" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="413" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="481" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13625" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="571" r_length="90" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E257817" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14460" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13625"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTC</genome_strand>
        <mrna_strand>TCGATTTTGATCCTCTGGATGCAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E253628" ref_strand="+" ref_description="SGN-E253628 [cLEG-32-C6]">
      <seq>caatggacctttaggatgtattctangttcgattttgatcctgtggatgtaagcgagacatggcctgaggatctcttgcccttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14775" stop="13327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14487" g_stop="14138" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="351" r_length="351" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="352" r_stop="441" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="509" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13627" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="510" r_stop="597" r_length="88" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E253628" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253628" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14487" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATGGACCCCGAGGATGTAGAC-AAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTG</genome_strand>
        <mrna_strand>CAATGGACCTTTAGGATGTATTCTANGTTCGATTTTGATCCTGTGGATGTAAGCGAGACATGGCCTGAGGATCTCTTGCCCTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E369672" ref_strand="+" ref_description="SGN-E369672 [TUS-25-N2]">
      <seq>ggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagatttgcagcatatggatatcatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14821" stop="13328"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14521" g_stop="14138" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="474" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="542" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13628" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="543" r_stop="629" r_length="87" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E369672" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14521" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13628"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTT</genome_strand>
        <mrna_strand>GGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTTGCAGCATATGGATATCATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E275204" ref_strand="+" ref_description="SGN-E275204 [cLEN-9-C19]">
      <seq>ggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14774" stop="13330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14474" g_stop="14138" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="427" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="495" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13630" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="580" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E275204" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14474" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATAC</genome_strand>
        <mrna_strand>GGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E275242" ref_strand="+" ref_description="SGN-E275242 [cLEN-9-G2]">
      <seq>ggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14774" stop="13330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14474" g_stop="14138" g_length="337"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="337" r_length="337" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="338" r_stop="427" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="495" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13630" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="580" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E275242" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275242" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14474" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATAC</genome_strand>
        <mrna_strand>GGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E254601" ref_strand="+" ref_description="SGN-E254601 [cLEG-29-P16]">
      <seq>tcgattttgatcctctggatgcaacccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctgacaggcaagacagatacatcaacaaatgggttgagtctttatccgatccacgagtcactcatgagattcgcagcatatggatatcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14760" stop="13330"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14460" g_stop="14138" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="414" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="482" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13630" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="567" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E254601" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254601" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14460" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13630"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTTTGATCCTCTGGATGTAA-CCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATAC</genome_strand>
        <mrna_strand>TCGATTTTGATCCTCTGGATGCAACCCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E699171" ref_strand="+" ref_description="SGN-E699171 [FA08DG11]">
      <seq>cgcttccactggaagcccacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatcccaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcccgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcactacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagacaacaacttccaacaggcaggggagaggtacagatcatgggaacctgaccggcaagacagatacatcaacaaatgggttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14935" stop="13386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14638" g_stop="14138" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="591" r_length="90" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13805" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="592" r_stop="659" r_length="68" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90">
            <donor d_prob="0.916" d_score="0.96"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="13714" g_stop="13686" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="688" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E699171" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14638" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13805"/>
          <exon e_start="13714" e_stop="13686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGTACTAATTTGGTTCATCTATCATACAATTTATCGCCAATTCACCCCCTCGTAAACACACGATGATAACTGATTATCCTTGTTATTTCAGGCAAGACAGATACATCAACAAATGGGTTG</genome_strand>
        <mrna_strand>CGCTTCCACTGGAAGCCCACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCCAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCCCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCACTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGACAACAACTTCCAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACCG..........................................................................................GCAAGACAGATACATCAACAAATGGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E699385" ref_strand="+" ref_description="SGN-E699385 [FA09DD12]">
      <seq>cccataatatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaacgcgcacaaattgtgtcattccgaaagaaaacaccttcaaacaggcaggggagaggtacagatcatgggaacctgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15008" stop="13506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14710" g_stop="14138" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="662" r_length="90" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13806" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="729" r_length="67" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E699385" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>730</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699385" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14710" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACA</genome_strand>
        <mrna_strand>CCCATA-ATATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAACGCGCACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACACCTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E275274" ref_strand="+" ref_description="SGN-E275274 [cLEN-9-D3]">
      <seq>cacgcgaccaaagatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14857" stop="13508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14557" g_stop="14138" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="510" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13808" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="575" r_length="65" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E275274" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E275274" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14557" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGA</genome_strand>
        <mrna_strand>CACGCGACCAAAGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E700789" ref_strand="+" ref_description="SGN-E700789 [FA14AF10]">
      <seq>gctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatccttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15163" stop="13509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14863" g_stop="14138" g_length="726"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="726" r_length="726" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="727" r_stop="816" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13809" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="817" r_stop="880" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E700789" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14863" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTG</genome_strand>
        <mrna_strand>GCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E699956" ref_strand="+" ref_description="SGN-E699956 [FA11CG11]">
      <seq>ccccgttaaaggggtgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattcccaaagaaaacaacttcaaacaggcagggggaaaggacagatcatgggaacctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15030" stop="13509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14738" g_stop="14138" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="603" r_stop="692" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13809" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="756" r_length="64" r_score="0.922"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E699956" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699956" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14738" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACGATGAT-GTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTG</genome_strand>
        <mrna_strand>CCCCGTTAAAGGGGTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCCAAAGAAAACAACTTCAAACAGGCAGGGGGAAAGGACAGATCATGGGAACCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E210504" ref_strand="+" ref_description="SGN-E210504 [cLEC-35-D21]">
      <seq>gaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccactcttcctttgatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatgggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14909" stop="13512"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14609" g_stop="14138" g_length="472"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="472" r_length="472" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="562" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13812" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="623" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E210504" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210504" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14609" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13812"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAAC</genome_strand>
        <mrna_strand>GAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACTCTTCCTTTGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E699493" ref_strand="+" ref_description="SGN-E699493 [FA10BC04]">
      <seq>gattagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaacttcaaacaggcaggggagaggtacagatcatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15061" stop="13515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14764" g_stop="14138" g_length="627"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="718" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13815" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="719" r_stop="776" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E699493" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>775</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14764" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13815"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GA-GAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGG</genome_strand>
        <mrna_strand>GATTAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E255500" ref_strand="+" ref_description="SGN-E255500 [cLEG-30-B15]">
      <seq>ggtggaaactatcctgagtggaagctttttatccaatcaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattccgaaagaaaacaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14824" stop="13549"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14524" g_stop="14138" g_length="387"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="387" r_length="387" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="477" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13849" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="501" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E255500" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255500" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14524" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13849"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAAAGAAAACAAC</genome_strand>
        <mrna_strand>GGTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAATCAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAAAGAAAACAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E210969" ref_strand="+" ref_description="SGN-E210969 [cLEC-69-P3]">
      <seq>gacttagcatcacgattatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattcccttctgtgtcttgaatggaaggcgtacaaattgtgtcattccgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15041" stop="13652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14746" g_stop="14138" g_length="609"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="700" r_length="90" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13859" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="701" r_stop="714" r_length="14" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E210969" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14746" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTTCTTCT-ACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTCCGAA</genome_strand>
        <mrna_strand>GACTTAGCATCACGATTATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCCTTCTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTCCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E257347" ref_strand="+" ref_description="SGN-E257347 [cLEG-45-E13]">
      <seq>cactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14932" stop="13652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14632" g_stop="14138" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="585" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13863" g_length="10"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="595" r_length="10" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E257347" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257347" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14632" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATTC</genome_strand>
        <mrna_strand>CACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E203468" ref_strand="+" ref_description="SGN-E203468 [cLEC-15-K10]">
      <seq>aaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14953" stop="13652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14653" g_stop="14138" g_length="516"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="516" r_length="516" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="606" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13864" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="607" r_stop="615" r_length="9" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E203468" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14653" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCATT</genome_strand>
        <mrna_strand>AAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E256935" ref_strand="+" ref_description="SGN-E256935 [cLEG-44-C12]">
      <seq>gcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgtacaaattgtgtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14854" stop="13657"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14554" g_stop="14138" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13960" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="507" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87">
            <donor d_prob="0.441" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13872" g_stop="13866" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="508" r_stop="514" r_length="7" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E256935" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256935" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14554" e_stop="14138"/>
          <exon e_start="14049" e_stop="13960"/>
          <exon e_start="13872" e_stop="13866"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAATGTGAGACAAATCTTTGTTATTCTTCGTCTGAATGATCTACGAATGAGTTTAACGTTCACTTACATATATACAATGTTGTTTTTTCAGTGTGTCA</genome_strand>
        <mrna_strand>GCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT.......................................................................................TGTGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E208244" ref_strand="+" ref_description="SGN-E208244 [cLEC-37-H15]">
      <seq>agagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatggaaggcgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14881" stop="13665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14581" g_stop="14138" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13965" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="529" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E208244" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14581" e_stop="14138"/>
          <exon e_start="14049" e_stop="13965"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTA</genome_strand>
        <mrna_strand>AGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E210656" ref_strand="+" ref_description="SGN-E210656 [cLEC-68-D17]">
      <seq>gatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaagtttgatccttgtcgtcctgctgagcagtacccgatcccttcttgtgtcttgaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15031" stop="13673"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14731" g_stop="14138" g_length="594"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="594" r_length="594" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13973" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="671" r_length="77" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E210656" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14731" e_stop="14138"/>
          <exon e_start="14049" e_stop="13973"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGG</genome_strand>
        <mrna_strand>GATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAAGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATCCCTTCTTGTGTCTTGAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E259384" ref_strand="+" ref_description="SGN-E259384 [cLEG-43-P15]">
      <seq>cactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14932" stop="13674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14632" g_stop="14138" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13974" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="571" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E259384" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259384" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14632" e_stop="14138"/>
          <exon e_start="14049" e_stop="13974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATG</genome_strand>
        <mrna_strand>CACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E266656" ref_strand="+" ref_description="SGN-E266656 [cLEI-5-K12]">
      <seq>acgcgaccaatgatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattccttcttgtgtcttgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14856" stop="13674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14556" g_stop="14138" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13974" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="495" r_length="76" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E266656" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266656" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14556" e_stop="14138"/>
          <exon e_start="14049" e_stop="13974"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATG</genome_strand>
        <mrna_strand>ACGCGACCAATGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E211287" ref_strand="+" ref_description="SGN-E211287 [cLEC-70-M16]">
      <seq>tacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaagtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgattcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15090" stop="13690"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14790" g_stop="14138" g_length="653"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="653" r_length="653" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13990" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="713" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E211287" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14790" e_stop="14138"/>
          <exon e_start="14049" e_stop="13990"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCT</genome_strand>
        <mrna_strand>TACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAA........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E244598" ref_strand="+" ref_description="SGN-E244598 [cLED-38-B24]">
      <seq>ttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14798" stop="13693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14498" g_stop="14138" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13993" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="418" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E244598" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14498" e_stop="14138"/>
          <exon e_start="14049" e_stop="13993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATT</genome_strand>
        <mrna_strand>TTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E257651" ref_strand="+" ref_description="SGN-E257651 [cLEG-39-E9]">
      <seq>cactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14932" stop="13695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14632" g_stop="14138" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13995" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="496" r_stop="550" r_length="55" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E257651" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14632" e_stop="14138"/>
          <exon e_start="14049" e_stop="13995"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGA</genome_strand>
        <mrna_strand>CACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E258532" ref_strand="+" ref_description="SGN-E258532 [cLEG-47-M10]">
      <seq>cactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgccgttaacccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaagtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14932" stop="13696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14632" g_stop="14138" g_length="495"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="496" r_length="496" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13996" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="550" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E258532" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14632" e_stop="14138"/>
          <exon e_start="14049" e_stop="13996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCG-CGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCG</genome_strand>
        <mrna_strand>CACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCCGTTAACCCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAA........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E276793" ref_strand="+" ref_description="SGN-E276793 [cLEN-14-O15]">
      <seq>agaagctattagagtcggtggtactaatcataaccacgctaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagcagtacccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14891" stop="13696"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14591" g_stop="14138" g_length="454"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="454" r_length="454" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="13996" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="508" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E276793" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>508</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276793" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14591" e_stop="14138"/>
          <exon e_start="14049" e_stop="13996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCG</genome_strand>
        <mrna_strand>AGAAGCTATTAGAGTCGGTGGTACTAATCATAACCACGCTACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E273478" ref_strand="+" ref_description="SGN-E273478 [cLEN-3-B14]">
      <seq>gtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagctggtcgattggtgttgaacatgaacattgataacttcttcgcacagaatgaacaactcgcgtttaaccctgtacatatacgtccctggtatttactattccgaggataagcttgttcagactaggatattcgcgtatgctgatactcagagacaccgtgttgcaccaaactatatgcagctcccagataatgcttcccccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatccttgtcgtcctgctgagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14978" stop="13704"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14678" g_stop="14138" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="14004" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="591" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E273478" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14678" e_stop="14138"/>
          <exon e_start="14049" e_stop="14004"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATAT-TGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGC-T--CCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGC</genome_strand>
        <mrna_strand>GTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGCTGGTCGATTGGTGTTGAACATGAACATTGATAACTTCTTCGCACAGAATGAACAACTCGCGTTTAACCCTGTACATATACGTCCCTGGTATTTACTATTCCGAGGATAAGCTTGTTCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTGTTGCACCAAACTATATGCAGCTCCCAGATAATGCTTCCCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E259206" ref_strand="+" ref_description="SGN-E259206 [cLEG-43-E20]">
      <seq>ttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttattcaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14935" stop="13719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14635" g_stop="14138" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="14019" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="499" r_stop="529" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E259206" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14635" e_stop="14138"/>
          <exon e_start="14049" e_stop="14019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTT</genome_strand>
        <mrna_strand>TTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATTCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E210260" ref_strand="+" ref_description="SGN-E210260 [cLEC-35-E7]">
      <seq>aagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttgccctcgaggtttgatcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14734" stop="13719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14434" g_stop="14138" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="14019" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="328" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E210260" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14434" e_stop="14138"/>
          <exon e_start="14049" e_stop="14019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTT</genome_strand>
        <mrna_strand>AAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTGCCCTCGAGGTTTGATCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E203823" ref_strand="+" ref_description="SGN-E203823 [cLEC-17-P20]">
      <seq>gatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactgtcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggccatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtggattatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14865" stop="13836"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14566" g_stop="14138" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="429" r_length="429" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88">
            <donor d_prob="0.813" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14049" g_stop="14038" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="441" r_length="12" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E203823" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>441</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14566" e_stop="14138"/>
          <exon e_start="14049" e_stop="14038"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACCAAACATTTCATTCTTCTGATGTATGACTAAATGTTGCAGGTGGATTATTTG</genome_strand>
        <mrna_strand>GATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTGTCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGCCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG........................................................................................GTGGATTATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E555371" ref_strand="+" ref_description="SGN-E555371 [cTSC-2-G1]">
      <seq>ctcagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattaaagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatgaagaggtactatgcaactcgacgattggtgctccctatgttttgccttttgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15219" stop="13789"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14919" g_stop="14089" g_length="831"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="831" r_length="831" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E555371" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>831</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E555371" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14919" e_stop="14089"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACC</genome_strand>
        <mrna_strand>CTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTAAAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCCTATGTTTTGCCTTTTGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E320552" ref_strand="+" ref_description="SGN-E320552 [cTOB-22-I10]">
      <seq>gttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14986" stop="13842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14686" g_stop="14142" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E320552" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14686" e_stop="14142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGA</genome_strand>
        <mrna_strand>GTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E265873" ref_strand="+" ref_description="SGN-E265873 [cLEI-11-H5]">
      <seq>gaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgggtgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14954" stop="13842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14654" g_stop="14142" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E265873" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14654" e_stop="14142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGA</genome_strand>
        <mrna_strand>GAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGGGTGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E246620" ref_strand="+" ref_description="SGN-E246620 [cLEF-45-L20]">
      <seq>gaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14939" stop="13842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14639" g_stop="14142" g_length="498"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="498" r_length="498" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E246620" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246620" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14639" e_stop="14142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGA</genome_strand>
        <mrna_strand>GAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E209303" ref_strand="+" ref_description="SGN-E209303 [cLEC-53-N15]">
      <seq>gaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14909" stop="13842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14609" g_stop="14142" g_length="468"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="468" r_length="468" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E209303" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>468</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209303" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14609" e_stop="14142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGA</genome_strand>
        <mrna_strand>GAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E336708" ref_strand="+" ref_description="SGN-E336708 [cTOE-5-C6]">
      <seq>gctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14887" stop="13842"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14587" g_stop="14142" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E336708" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14587" e_stop="14142"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGA</genome_strand>
        <mrna_strand>GCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E208010" ref_strand="+" ref_description="SGN-E208010 [cLEC-34-E9]">
      <seq>gatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcgcgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15031" stop="13843"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14731" g_stop="14143" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E208010" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14731" e_stop="14143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATG</genome_strand>
        <mrna_strand>GATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E274980" ref_strand="+" ref_description="SGN-E274980 [cLEN-16-M15]">
      <seq>ccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatgacacatcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15019" stop="13848"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14719" g_stop="14148" g_length="572"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E274980" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274980" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14719" e_stop="14148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCG</genome_strand>
        <mrna_strand>CCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E333657" ref_strand="+" ref_description="SGN-E333657 [cTOD-22-F16]">
      <seq>taactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15212" stop="13855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14912" g_stop="14155" g_length="758"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="758" r_length="758" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E333657" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333657" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14912" e_stop="14155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGA</genome_strand>
        <mrna_strand>TAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E211248" ref_strand="+" ref_description="SGN-E211248 [cLEC-70-L10]">
      <seq>ttgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactangatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15133" stop="13855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14833" g_stop="14155" g_length="679"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E211248" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>679</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211248" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14833" e_stop="14155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGA</genome_strand>
        <mrna_strand>TTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTANGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E213286" ref_strand="+" ref_description="SGN-E213286 [cLEC-71-A10]">
      <seq>attcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactangatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgcgatggtgctatgaacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15109" stop="13855"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14809" g_stop="14155" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E213286" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213286" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14809" e_stop="14155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGA</genome_strand>
        <mrna_strand>ATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTANGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E700724" ref_strand="+" ref_description="SGN-E700724 [FA13DH12]">
      <seq>gatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcccgatggtgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15031" stop="13865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14731" g_stop="14165" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="567" r_length="567" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E700724" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700724" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14731" e_stop="14165"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCT</genome_strand>
        <mrna_strand>GATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCCCGATGGTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E259712" ref_strand="+" ref_description="SGN-E259712 [cLEG-42-H23]">
      <seq>ttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatcatcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14991" stop="13874"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14691" g_stop="14174" g_length="518"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="518" r_length="518" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E259712" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>518</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14691" e_stop="14174"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGC</genome_strand>
        <mrna_strand>TTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E266702" ref_strand="+" ref_description="SGN-E266702 [cLEI-5-F20]">
      <seq>tctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctcccaagtgtggtcatcacaacaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15078" stop="13879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14778" g_stop="14179" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="600" r_length="600" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E266702" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14778" e_stop="14179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATC</genome_strand>
        <mrna_strand>TCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E701955" ref_strand="+" ref_description="SGN-E701955 [FA17BF06]">
      <seq>catgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatccttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtattttactattccgnaggatagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcccagttaatgctccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15509" stop="13901"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15209" g_stop="15012" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14201" g_length="714"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="913" r_length="715" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E701955" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>912</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E701955" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15209" e_stop="15012"/>
          <exon e_start="14914" e_stop="14201"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTA-TTTACTATTCCG-AGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCC</genome_strand>
        <mrna_strand>CATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTTACTATTCCGNAGGAT-AGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E212683" ref_strand="+" ref_description="SGN-E212683 [cLEC-73-E16]">
      <seq>taactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactangatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15212" stop="13915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14912" g_stop="14215" g_length="698"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E212683" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>698</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14912" e_stop="14215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCC</genome_strand>
        <mrna_strand>TAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTANGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E214548" ref_strand="+" ref_description="SGN-E214548 [cLEC-79-M10]">
      <seq>attcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15109" stop="13915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14809" g_stop="14215" g_length="595"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="595" r_length="595" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E214548" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>595</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214548" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14809" e_stop="14215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCC</genome_strand>
        <mrna_strand>ATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E725823" ref_strand="+" ref_description="SGN-E725823 [LA05DE02]">
      <seq>agtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggacaaactatatgcagctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15061" stop="13915"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14761" g_stop="14215" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E725823" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E725823" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14761" e_stop="14215"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCC</genome_strand>
        <mrna_strand>AGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGA-CAAACTATATGCAGCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E255655" ref_strand="+" ref_description="SGN-E255655 [cLEG-36-B12]">
      <seq>agaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaagatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15102" stop="13918"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14802" g_stop="14218" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="585" r_length="585" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E255655" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14802" e_stop="14218"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGC</genome_strand>
        <mrna_strand>AGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAAGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E706698" ref_strand="+" ref_description="SGN-E706698 [FA30CG03]">
      <seq>gtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatccttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctcccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactatatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15493" stop="13921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15193" g_stop="15012" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14221" g_length="694"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="877" r_length="695" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E706698" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15193" e_stop="15012"/>
          <exon e_start="14914" e_stop="14221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCT-CCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGC</genome_strand>
        <mrna_strand>GTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E706721" ref_strand="+" ref_description="SGN-E706721 [FA30DA03]">
      <seq>gtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatccttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaacccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcaaagacaccgtattggaccaaactatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15493" stop="13923"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15193" g_stop="15012" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="182" r_length="182" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14223" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="875" r_length="693" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E706721" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>874</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E706721" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15193" e_stop="15012"/>
          <exon e_start="14914" e_stop="14223"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAA-CCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATAT</genome_strand>
        <mrna_strand>GTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAAAGACACCGTATTGGACCAAACTATAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E282676" ref_strand="+" ref_description="SGN-E282676 [cLER-15-D13]">
      <seq>ttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggaccaaactata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14935" stop="13924"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14635" g_stop="14224" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E282676" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282676" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14635" e_stop="14224"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATA</genome_strand>
        <mrna_strand>TTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E265054" ref_strand="+" ref_description="SGN-E265054 [cLEI-2-K10]">
      <seq>ccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactcagagacaccgtattggacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15121" stop="13931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14821" g_stop="14231" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E265054" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14821" e_stop="14231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCA</genome_strand>
        <mrna_strand>CCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E252851" ref_strand="+" ref_description="SGN-E252851 [cLEG-16-K10]">
      <seq>taaaaaaaaaaaaaaaactcgagagttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="23459" stop="13951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14879" g_stop="14251" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="629" r_length="629" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E252851" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>629</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14879" e_stop="14251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTC</genome_strand>
        <mrna_strand>TAAAAAAAAAAAAAAAACTCGAGAGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E246015" ref_strand="+" ref_description="SGN-E246015 [cLEF-54-O18]">
      <seq>gattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15143" stop="13951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14843" g_stop="14251" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E246015" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14843" e_stop="14251"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTC</genome_strand>
        <mrna_strand>GATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E330326" ref_strand="+" ref_description="SGN-E330326 [cTOD-4-F18]">
      <seq>ttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15178" stop="13953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14878" g_stop="14253" g_length="626"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="626" r_length="626" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E330326" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330326" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14878" e_stop="14253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATAC</genome_strand>
        <mrna_strand>TTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E251545" ref_strand="+" ref_description="SGN-E251545 [cLEG-9-E14]">
      <seq>tctacgatgatgtttgtctcccaacggattacagacacatggaaggttgtggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgctgatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15039" stop="13953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14739" g_stop="14253" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E251545" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14739" e_stop="14253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATAC</genome_strand>
        <mrna_strand>TCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTGTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E320520" ref_strand="+" ref_description="SGN-E320520 [cTOB-22-K9]">
      <seq>gttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctgtacatattgtccctggtatatactattccgaggataagcttctgcagactatgatattcgcgtatgctgata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14986" stop="13954"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14686" g_stop="14254" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E320520" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E320520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14686" e_stop="14254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATA</genome_strand>
        <mrna_strand>GTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGTACATATTGTCCCTGGTATATACTATTCCGAGGATAAGCTTCTGCAGACTATGATATTCGCGTATGCTGATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E238468" ref_strand="+" ref_description="SGN-E238468 [cLED-17-C9]">
      <seq>ctggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagcttctccagactaggatattcgcgtatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15098" stop="13958"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14798" g_stop="14258" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E238468" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14798" e_stop="14258"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCT</genome_strand>
        <mrna_strand>CTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E265346" ref_strand="+" ref_description="SGN-E265346 [cLEI-9-F12]">
      <seq>tttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaggccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattccgaggataagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15175" stop="13986"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14875" g_stop="14286" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E265346" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265346" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14875" e_stop="14286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCT</genome_strand>
        <mrna_strand>TTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAGGCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E266704" ref_strand="+" ref_description="SGN-E266704 [cLEI-5-F24]">
      <seq>tctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataactgcttcgcagagaatgaacaactcgcgtgtaaccctggacatattgtccgtggtatttactattccgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15078" stop="13994"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14778" g_stop="14294" g_length="485"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="485" r_length="485" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E266704" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266704" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14778" e_stop="14294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAG</genome_strand>
        <mrna_strand>TCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTGCTTCGCAGAGAATGAACAACTCGCGTGTAACCCTGGACATATTGTCCGTGGTATTTACTATTCCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E697613" ref_strand="+" ref_description="SGN-E697613 [FA03CD02]">
      <seq>cttaccaggtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatccttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattacagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaacccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcccacaaaatgaacaactcgcgtttaaccctggacatattgtccctggcatttactattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15383" stop="13998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15093" g_stop="15012" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14298" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="698" r_length="618" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E697613" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E697613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15093" e_stop="15012"/>
          <exon e_start="14914" e_stop="14298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAA-CCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTC</genome_strand>
        <mrna_strand>CT-TAC-CAGGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTACAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCCCACAAAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGCATTTACTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E214834" ref_strand="+" ref_description="SGN-E214834 [cLEC-78-C13]">
      <seq>ggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15371" stop="13998"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15071" g_stop="15012" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14298" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="677" r_length="617" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E214834" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15071" e_stop="15012"/>
          <exon e_start="14914" e_stop="14298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTC</genome_strand>
        <mrna_strand>GGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E256655" ref_strand="+" ref_description="SGN-E256655 [cLEG-40-I23]">
      <seq>ttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaagatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaacccttggacatatttgtccctggtatttactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15174" stop="14000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14874" g_stop="14300" g_length="575"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="577" r_length="577" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E256655" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>575</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14874" e_stop="14300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCC-TGGACATA-TTGTCCCTGGTATTTACTAT</genome_strand>
        <mrna_strand>TTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAAGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTTGGACATATTTGTCCCTGGTATTTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E265653" ref_strand="+" ref_description="SGN-E265653 [cLEI-14-B6]">
      <seq>tcgtgcattgaaaccaaatccaaagtcacacattgaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15140" stop="14000"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14840" g_stop="14300" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E265653" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265653" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14840" e_stop="14300"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTAT</genome_strand>
        <mrna_strand>TCGTGCATTGAAACCAAATCCAAAGTCACACATTGAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E214322" ref_strand="+" ref_description="SGN-E214322 [cLEC-77-N24]">
      <seq>tcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15355" stop="14001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15055" g_stop="15012" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14301" g_length="614"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="658" r_length="614" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E214322" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>658</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214322" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15055" e_stop="15012"/>
          <exon e_start="14914" e_stop="14301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTA</genome_strand>
        <mrna_strand>TCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E298064" ref_strand="+" ref_description="SGN-E298064 [cLEW-12-A21]">
      <seq>tttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15208" stop="14001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14908" g_stop="14301" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E298064" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E298064" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14908" e_stop="14301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTA</genome_strand>
        <mrna_strand>TTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E253124" ref_strand="+" ref_description="SGN-E253124 [cLEG-25-L4]">
      <seq>ttaatcgtgattctaagtcgttctctgacacgattcgtgcattgaaaccaaatgcaaagttacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15174" stop="14001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14874" g_stop="14301" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E253124" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14874" e_stop="14301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTA</genome_strand>
        <mrna_strand>TTAATCGTGATTCTAAGTCGTTCTCTGACACGATTCGTGCATTGAAACCAAATGCAAAGTTACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E259607" ref_strand="+" ref_description="SGN-E259607 [cLEG-42-A17]">
      <seq>aactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgaatggaagcttgatatccaatcactggaacccgacgatgtgaacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15100" stop="14001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14800" g_stop="14301" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E259607" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E259607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14800" e_stop="14301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTA</genome_strand>
        <mrna_strand>AACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAATGGAAGCTTGATATCCAATCACTGGAACCCGACGATGTGAACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E338310" ref_strand="+" ref_description="SGN-E338310 [cTOE-13-J5]">
      <seq>tttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcaaagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15027" stop="14001"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14727" g_stop="14301" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="427" r_length="427" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E338310" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14727" e_stop="14301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTA</genome_strand>
        <mrna_strand>TTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAAAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E256142" ref_strand="+" ref_description="SGN-E256142 [cLEG-37-P22]">
      <seq>tcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaagatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaagatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctggtatttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15157" stop="14002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14857" g_stop="14302" g_length="556"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="556" r_length="556" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E256142" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E256142" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14857" e_stop="14302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACT</genome_strand>
        <mrna_strand>TCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAAGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAAGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E204003" ref_strand="+" ref_description="SGN-E204003 [cLEC-22-G19]">
      <seq>tacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtgcctggtatttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15037" stop="14003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14737" g_stop="14303" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E204003" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204003" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14737" e_stop="14303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTAC</genome_strand>
        <mrna_strand>TACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTGCCTGGTATTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E213006" ref_strand="+" ref_description="SGN-E213006 [cLEC-72-I22]">
      <seq>cgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacatattgtccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15431" stop="14011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15131" g_stop="15012" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14311" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="724" r_length="604" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E213006" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15131" e_stop="15012"/>
          <exon e_start="14914" e_stop="14311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTG</genome_strand>
        <mrna_strand>CGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E250291" ref_strand="+" ref_description="SGN-E250291 [cLEG-6-E12]">
      <seq>gagaactggaggatactggatttcttctcgttccttcctgagagtttgcatacattctccttctggtacgatgatgtttgtcttccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaataggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggaggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtatacgagttcgattttgatcctatggatgtaacgccaaaaaacacatgggctgaggatctcttgccgatgatcccagatggtcgattggtgttgaacaggaacattgataacttcttcgcaaanaatgaacaactagcgtttaaccctgtacatattgtccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15103" stop="14011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14803" g_stop="14311" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E250291" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250291" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14803" e_stop="14311"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAA--CC----AAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTG</genome_strand>
        <mrna_strand>GAGAACTGGAGGATACTGGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCTCCTTCTGGTACGATGATGTTTGTCTTCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAATAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGAGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTATACGAGTTCGATTTTGATCCTATGGATGTAACGCCAAAAAACACATGGGCTGAGGATCTCTTGCCGATGATCCCAGATGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAAANAATGAACAACTAGCGTTTAACCCTGTACATATTGTCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E204221" ref_strand="+" ref_description="SGN-E204221 [cLEC-13-D19]">
      <seq>taactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15212" stop="14020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14912" g_stop="14320" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="593" r_length="593" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E204221" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14912" e_stop="14320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATA</genome_strand>
        <mrna_strand>TAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E338175" ref_strand="+" ref_description="SGN-E338175 [cTOE-13-B22]">
      <seq>ttgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14971" stop="14020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14671" g_stop="14320" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="352" r_length="352" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E338175" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>352</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338175" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14671" e_stop="14320"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATA</genome_strand>
        <mrna_strand>TTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E251281" ref_strand="+" ref_description="SGN-E251281 [cLEG-10-L19]">
      <seq>tttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgtttaaccctggaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15338" stop="14022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15038" g_stop="15012" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14322" g_length="593"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="620" r_length="593" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E251281" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15038" e_stop="15012"/>
          <exon e_start="14914" e_stop="14322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACA</genome_strand>
        <mrna_strand>TTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E213771" ref_strand="+" ref_description="SGN-E213771 [cLEC-76-I3]">
      <seq>cctggttaaacgcgagttgttcattctctgcgaagaagttatcaatgttcctgttcaacaccaatcgaccaactgggatcaacggcaagagatcctcaggccatgtcttggttacatccagaggatcaaaatcgaacttgtctacatcctcggggtccattgtttggataaaaagcttccactcaggatagtttccagcagcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14029" stop="14830"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14326" g_stop="14530" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E213771" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>205</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213771" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14326" e_stop="14530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGGTTAAACGCGAGTTGTTCATTCTCTGCGAAGAAGTTATCAATGTTCCTGTTCAACACCAATCGACCAACTGGGATCAACGGCAAGAGATCCTCAGGCCATGTCTTGGTTACATCCAGAGGATCAAAATCGAACTTGTCTACATCCTCGGGGTCCATTGTTTGGATAAAAAGCTTCCACTCAGGATAGTTTCCAGCAGCAAT</genome_strand>
        <mrna_strand>CCTGGTTAAACGCGAGTTGTTCATTCTCTGCGAAGAAGTTATCAATGTTCCTGTTCAACACCAATCGACCAACTGGGATCAACGGCAAGAGATCCTCAGGCCATGTCTTGGTTACATCCAGAGGATCAAAATCGAACTTGTCTACATCCTCGGGGTCCATTGTTTGGATAAAAAGCTTCCACTCAGGATAGTTTCCAGCAGCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E282099" ref_strand="+" ref_description="SGN-E282099 [cLES-4-E7]">
      <seq>aaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagaaaatgaacaactcgcgttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15119" stop="14033"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14819" g_stop="14333" g_length="487"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="487" r_length="487" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E282099" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E282099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14819" e_stop="14333"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTT</genome_strand>
        <mrna_strand>AAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAAAATGAACAACTCGCGTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E204008" ref_strand="+" ref_description="SGN-E204008 [cLEC-22-K15]">
      <seq>attcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgcagagaatgaacaactcgcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15109" stop="14035"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14809" g_stop="14335" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="475" r_length="475" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E204008" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>475</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14809" e_stop="14335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGT</genome_strand>
        <mrna_strand>ATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E707998" ref_strand="+" ref_description="SGN-E707998 [FA34CC03]">
      <seq>ctgtttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatccttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaataggaacatttgataacttcttctcagagaatgaacaactcgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15342" stop="14036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15043" g_stop="15012" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="0.938"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14336" g_length="579"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="612" r_length="580" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E707998" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15043" e_stop="15012"/>
          <exon e_start="14914" e_stop="14336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACA-TTGATAACTTCTTCGCAGAGAATGAACAACTCGCG</genome_strand>
        <mrna_strand>CTGTTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAATAGGAACATTTGATAACTTCTTCTCAGAGAATGAACAACTCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E205439" ref_strand="+" ref_description="SGN-E205439 [cLEC-28-P13]">
      <seq>caaagtcacacattcaggagaactgggggatacttgacttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaagaagaagctattagagtcggcggttctaatcatagccacgcgaccaaggatctttacgatacaattgctgctggaaactatcttgagtggaagctatttatccacacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggactgaggatctcttgccgttgatcccagttggtcgattggagttgaacaggaacattgataacttcttcgcacagaatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15120" stop="14045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14820" g_stop="14345" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="476" r_length="476" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E205439" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205439" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14820" e_stop="14345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAA</genome_strand>
        <mrna_strand>CAAAGTCACACATTCAGGAGAACTGGGGGATACTTGACTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAAGAAGAAGCTATTAGAGTCGGCGGTTCTAATCATAGCCACGCGACCAAGGATCTTTACGATACAATTGCTGCTGGAAACTATCTTGAGTGGAAGCTATTTATCCACACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGACTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGAGTTGAACAGGAACATTGATAACTTCTTCGCACAGAATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E255535" ref_strand="+" ref_description="SGN-E255535 [cLEG-30-D4]">
      <seq>gaacgtggaagccccgagtctatcagggatattcgtggttttgctgtcaagttgtacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaggaacattgataacttcttcgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15377" stop="14055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15077" g_stop="15012" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14355" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="626" r_length="560" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E255535" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15077" e_stop="15012"/>
          <exon e_start="14914" e_stop="14355"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGC</genome_strand>
        <mrna_strand>GAACGTGGAAGCCCCGAGTCTATCAGGGATATTCGTGGTTTTGCTGTCAAGTTGTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E212093" ref_strand="+" ref_description="SGN-E212093 [cLEC-75-M9]">
      <seq>tgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgatgggtgttgaacaggaacattgataacttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15492" stop="14060"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15192" g_stop="15012" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="181" r_length="181" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14360" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="735" r_length="554" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E212093" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>736</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212093" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15192" e_stop="15012"/>
          <exon e_start="14914" e_stop="14360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTC</genome_strand>
        <mrna_strand>TGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGT-ACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATGGGTGTTGAACAGGAACATTGATAACTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E245766" ref_strand="+" ref_description="SGN-E245766 [cLEF-48-E21]">
      <seq>gtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaaggcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaagatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttgaacaagaacattgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15168" stop="14066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14868" g_stop="14366" g_length="503"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="503" r_length="503" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E245766" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14868" e_stop="14366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGAT</genome_strand>
        <mrna_strand>GTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGGCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAAGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAAGAACATTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E244888" ref_strand="+" ref_description="SGN-E244888 [cLEF-2-B18]">
      <seq>tacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgcgaaatgtatgtcagaggaagaagctattacagtcggaggtactaatcatatccacagcgaccaaggatctttacgattcaattgctgatggaaactatcctgagtggaagctttttattcaaacaatggacccagaggatgtagacaagttcgattttgatcctctggatgttaccaatacatggcctgaggatctcttgccgttgatcccaattggtcgattggtgttgaacagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15037" stop="14075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14737" g_stop="14375" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E244888" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14737" e_stop="14375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCAC-GCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGG</genome_strand>
        <mrna_strand>TACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGCGAAATGTATGTCAGAGGAAGAAGCTATTACAGTCGGAGGTACTAATCATATCCACAGCGACCAAGGATCTTTACGATTCAATTGCTGATGGAAACTATCCTGAGTGGAAGCTTTTTATTCAAACAATGGACCCAGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTTACCAATACATGGCCTGAGGATCTCTTGCCGTTGATCCCAATTGGTCGATTGGTGTTGAACAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E205766" ref_strand="+" ref_description="SGN-E205766 [cLEC-21-L8]">
      <seq>ggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgattggtgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15371" stop="14081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15071" g_stop="15012" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14381" g_length="534"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="594" r_length="534" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E205766" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15071" e_stop="15012"/>
          <exon e_start="14914" e_stop="14381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTG</genome_strand>
        <mrna_strand>GGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E302874" ref_strand="+" ref_description="SGN-E302874 [cLEW-26-I1]">
      <seq>tgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatcccagttggtcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15387" stop="14089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15087" g_stop="15012" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14389" g_length="526"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="602" r_length="526" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E302874" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15087" e_stop="15012"/>
          <exon e_start="14914" e_stop="14389"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGAT</genome_strand>
        <mrna_strand>TGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E202285" ref_strand="+" ref_description="SGN-E202285 [cLEC-6-A14]">
      <seq>tttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgccgttgatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15338" stop="14100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15038" g_stop="15012" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14400" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="542" r_length="515" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E202285" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15038" e_stop="15012"/>
          <exon e_start="14914" e_stop="14400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCC</genome_strand>
        <mrna_strand>TTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E206433" ref_strand="+" ref_description="SGN-E206433 [cLEC-23-I7]">
      <seq>caagttctacaccagagagggtaactttgatcttgttggaaacaatgggcgcgtgttctttaatcgtgatgctaactcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaagatctcttgccgttgatccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15330" stop="14100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15030" g_stop="15012" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14400" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="534" r_length="515" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E206433" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206433" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15030" e_stop="15012"/>
          <exon e_start="14914" e_stop="14400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCC</genome_strand>
        <mrna_strand>CAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGGGCGCGTGTTCTTTAATCGTGATGCTAACTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAAGATCTCTTGCCGTTGATCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E379535" ref_strand="+" ref_description="SGN-E379535 [TUS-3-N4]">
      <seq>gaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15531" stop="14110"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15231" g_stop="15012" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="220" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14410" g_length="505"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="725" r_length="505" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E379535" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15231" e_stop="15012"/>
          <exon e_start="14914" e_stop="14410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGC</genome_strand>
        <mrna_strand>GAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E215112" ref_strand="+" ref_description="SGN-E215112 [cLEC-78-P11]">
      <seq>ttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15026" stop="14111"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14726" g_stop="14411" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E215112" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>316</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14726" e_stop="14411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTG</genome_strand>
        <mrna_strand>TTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E265119" ref_strand="+" ref_description="SGN-E265119 [cLEI-2-C13]">
      <seq>agctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15429" stop="14114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15129" g_stop="15012" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14414" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="619" r_length="501" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E265119" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15129" e_stop="15012"/>
          <exon e_start="14914" e_stop="14414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTC</genome_strand>
        <mrna_strand>AGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E276119" ref_strand="+" ref_description="SGN-E276119 [cLEN-12-B18]">
      <seq>tctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaaccaagacatggcctgaggatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15177" stop="14114"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14877" g_stop="14414" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="464" r_length="464" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E276119" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14877" e_stop="14414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTC</genome_strand>
        <mrna_strand>TCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E213436" ref_strand="+" ref_description="SGN-E213436 [cLEC-71-F1]">
      <seq>acattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatcaaacaatggaccccgaggatgtagacnagttcgattttgatcctctggatgtaaccaagacatggcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15349" stop="14122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15049" g_stop="15012" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="38" r_length="38" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14422" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="39" r_stop="530" r_length="492" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E213436" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213436" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15049" e_stop="15012"/>
          <exon e_start="14914" e_stop="14422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTG</genome_strand>
        <mrna_strand>ACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTAT-CAAACAATGGACCCCGAGGATGTAGACNAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E287501" ref_strand="+" ref_description="SGN-E287501 [cLES-9-G24]">
      <seq>acgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacacgacacatggaaggttttggcgttcacgcgtctccattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggagtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagtgcgattttgatcctctggatgtaaccaagacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15145" stop="14128"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14845" g_stop="14428" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="419" r_length="419" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E287501" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E287501" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14845" e_stop="14428"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACA-GACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACAT</genome_strand>
        <mrna_strand>ACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACACGACACATGGAAGGTTTTGGCGTTCACGCGTCTCCATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGAGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTGCGATTTTGATCCTCTGGATGTAACCAAGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E277027" ref_strand="+" ref_description="SGN-E277027 [cLEN-22-G12]">
      <seq>aaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15415" stop="14136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15115" g_stop="15012" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14436" g_length="479"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="583" r_length="479" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E277027" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277027" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15115" e_stop="15012"/>
          <exon e_start="14914" e_stop="14436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAAC</genome_strand>
        <mrna_strand>AAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E325517" ref_strand="+" ref_description="SGN-E325517 [cTOC-15-E1]">
      <seq>aaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaaagcttttatccaaacaatggnaccccgagatgtagacnagttcgattttgatcctctggatgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15415" stop="14138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15115" g_stop="15012" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14437" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="582" r_length="478" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E325517" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E325517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15115" e_stop="15012"/>
          <exon e_start="14914" e_stop="14437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGG-ACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAA</genome_strand>
        <mrna_strand>AAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAAGCTTTTATCCAAACAATGGNACCCCGA-GATGTAGACNAGTTCGATTTTGATCCTCTGGATGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E211157" ref_strand="+" ref_description="SGN-E211157 [cLEC-70-E20]">
      <seq>ctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgtacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15523" stop="14134"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15223" g_stop="15012" g_length="212"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="212" r_length="212" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14439" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="213" r_stop="687" r_length="475" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E211157" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15223" e_stop="15012"/>
          <exon e_start="14914" e_stop="14439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGT</genome_strand>
        <mrna_strand>CTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCC-AACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E247493" ref_strand="+" ref_description="SGN-E247493 [cLEF-42-E17]">
      <seq>cgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15420" stop="14139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15120" g_stop="15012" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14439" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="585" r_length="476" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E247493" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15120" e_stop="15012"/>
          <exon e_start="14914" e_stop="14439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGT</genome_strand>
        <mrna_strand>CGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E251799" ref_strand="+" ref_description="SGN-E251799 [cLEG-14-A11]">
      <seq>tcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15399" stop="14139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15099" g_stop="15012" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14439" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="564" r_length="476" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E251799" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251799" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15099" e_stop="15012"/>
          <exon e_start="14914" e_stop="14439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGT</genome_strand>
        <mrna_strand>TCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E207906" ref_strand="+" ref_description="SGN-E207906 [cLEC-34-K20]">
      <seq>tcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15345" stop="14139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15045" g_stop="15012" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14439" g_length="476"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="510" r_length="476" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E207906" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207906" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15045" e_stop="15012"/>
          <exon e_start="14914" e_stop="14439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGT</genome_strand>
        <mrna_strand>TCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E321154" ref_strand="+" ref_description="SGN-E321154 [cTOB-13-H3]">
      <seq>ttgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgacgaagaaactattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15133" stop="14139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14833" g_stop="14439" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="395" r_length="395" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E321154" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14833" e_stop="14439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGT</genome_strand>
        <mrna_strand>TTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGACGAAGAAACTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E206355" ref_strand="+" ref_description="SGN-E206355 [cLEC-23-H3]">
      <seq>agaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15102" stop="14139"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14802" g_stop="14439" g_length="364"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="364" r_length="364" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E206355" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>364</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206355" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14802" e_stop="14439"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGT</genome_strand>
        <mrna_strand>AGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E204695" ref_strand="+" ref_description="SGN-E204695 [cLEC-14-J21]">
      <seq>ggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15341" stop="14140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15041" g_stop="15012" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14440" g_length="475"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="505" r_length="475" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E204695" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>505</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15041" e_stop="15012"/>
          <exon e_start="14914" e_stop="14440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATG</genome_strand>
        <mrna_strand>GGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E240406" ref_strand="+" ref_description="SGN-E240406 [cLED-25-L23]">
      <seq>ccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15183" stop="14140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14883" g_stop="14440" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E240406" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14883" e_stop="14440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATG</genome_strand>
        <mrna_strand>CCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E249902" ref_strand="+" ref_description="SGN-E249902 [cLEF-57-H2]">
      <seq>ttaatcgagatgctaagtcgatccctgacacgaatcctgcattgaaaccaaatgcaaagtcacacattcaagagaactggaagatacttgatttcttctcgttccttcctgagaggttgcatacattcaccttcttctacgatgatgtttgtctcccaacggattacacacacatggaaggttttggcgttcacacgtatcaattgattaacaaagaggggaaagcacattatgtgaagtttcactggaagccaacttgtggtgtgaaatgtatgtctgaagaagaaactattaaagtcggtggtactaatcatagcctccccgaccaaagatctttacgactcaattgctgctggaaactatactgagtggaagctttttatcccaacaatggaccccgacgatgtagacaagctcgattttgatcctctggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15174" stop="14140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14874" g_stop="14440" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="436" r_length="436" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E249902" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249902" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14874" e_stop="14440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCC-ACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATG</genome_strand>
        <mrna_strand>TTAATCGAGATGCTAAGTCGATCCCTGACACGAATCCTGCATTGAAACCAAATGCAAAGTCACACATTCAAGAGAACTGGAAGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGGTTGCATACATTCACCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACACACACATGGAAGGTTTTGGCGTTCACACGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTTCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAAGAAGAAACTATTAAAGTCGGTGGTACTAATCATAGCCTCCCCGACCAAAGATCTTTACGACTCAATTGCTGCTGGAAACTATACTGAGTGGAAGCTTTTTATCCCAACAATGGACCCCGACGATGTAGACAAGCTCGATTTTGATCCTCTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E335932" ref_strand="+" ref_description="SGN-E335932 [cTOE-6-K19]">
      <seq>gcacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15146" stop="14140"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14847" g_stop="14440" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="408" r_length="408" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E335932" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335932" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14847" e_stop="14440"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATG</genome_strand>
        <mrna_strand>GCACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E335707" ref_strand="+" ref_description="SGN-E335707 [cTOE-8-K24]">
      <seq>tttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15175" stop="14141"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14875" g_stop="14441" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="435" r_length="435" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E335707" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14875" e_stop="14441"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGAT</genome_strand>
        <mrna_strand>TTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E211467" ref_strand="+" ref_description="SGN-E211467 [cLEC-67-F5]">
      <seq>cgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcctctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15431" stop="14142"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15131" g_stop="15012" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14442" g_length="473"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="593" r_length="473" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E211467" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>593</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15131" e_stop="15012"/>
          <exon e_start="14914" e_stop="14442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGA</genome_strand>
        <mrna_strand>CGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E337900" ref_strand="+" ref_description="SGN-E337900 [cTOE-14-M24]">
      <seq>ttccctgacacgattcatgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattacagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15154" stop="14148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14854" g_stop="14448" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E337900" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337900" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14854" e_stop="14448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCC</genome_strand>
        <mrna_strand>TTCCCTGACACGATTCATGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTACAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E205844" ref_strand="+" ref_description="SGN-E205844 [cLEC-20-M18]">
      <seq>aagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15369" stop="14149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15069" g_stop="15012" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14449" g_length="466"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="524" r_length="466" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E205844" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15069" e_stop="15012"/>
          <exon e_start="14914" e_stop="14449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATC</genome_strand>
        <mrna_strand>AAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E201985" ref_strand="+" ref_description="SGN-E201985 [cLEC-7-K2]">
      <seq>gatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgattttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15166" stop="14150"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14866" g_stop="14450" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E201985" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14866" e_stop="14450"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGAT</genome_strand>
        <mrna_strand>GATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E231301" ref_strand="+" ref_description="SGN-E231301 [cLED-5-P14]">
      <seq>gacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgaggatgtagacaagttcgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15350" stop="14156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15050" g_stop="15012" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14456" g_length="459"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="498" r_length="459" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E231301" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15050" e_stop="15012"/>
          <exon e_start="14914" e_stop="14456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGAT</genome_strand>
        <mrna_strand>GACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E207134" ref_strand="+" ref_description="SGN-E207134 [cLEC-30-I7]">
      <seq>atttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgaatggaagctttttatccaaacaatggaccccgaggatgtagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15404" stop="14165"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15104" g_stop="15012" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="93" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14465" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="543" r_length="450" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E207134" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15104" e_stop="15012"/>
          <exon e_start="14914" e_stop="14465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGAC</genome_strand>
        <mrna_strand>ATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAATGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E310410" ref_strand="+" ref_description="SGN-E310410 [cTOA-10-O2]">
      <seq>ttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattaaagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccccgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15073" stop="14172"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14773" g_stop="14472" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E310410" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>302</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14773" e_stop="14472"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGA</genome_strand>
        <mrna_strand>TTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAAAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E704219" ref_strand="+" ref_description="SGN-E704219 [FA23CG03]">
      <seq>ctgtttatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatccttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattncattgctgctggaaactatcctgagtggaagctttttatcaaacaatggaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17080" stop="14178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16780" g_stop="16713" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="165" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="443" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14478" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="879" r_length="436" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E704219" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>880</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704219" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16780" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCC</genome_strand>
        <mrna_strand>CTGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTNCATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTAT-CAAACAATGGACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E214773" ref_strand="+" ref_description="SGN-E214773 [cLEC-79-A16]">
      <seq>gctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaagatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15428" stop="14178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15128" g_stop="15012" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14478" g_length="437"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="554" r_length="437" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E214773" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214773" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15128" e_stop="15012"/>
          <exon e_start="14914" e_stop="14478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCC</genome_strand>
        <mrna_strand>GCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAAGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E201206" ref_strand="+" ref_description="SGN-E201206 [cLEC-10-K23]">
      <seq>ggttttggcgttcacgcctctcaattgattaacaaagaggggaaagcacattatgtgaagtttcactggaagccaacttgtggcgtgaaatgtatgtctgatgaagaagctattaaagtcggtggtactaattataaccacgcgaccaaggatctttaccagttaattgctgctggaaactatcctgcgtgggagctttttatccaaacaatggaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="14995" stop="14178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14695" g_stop="14478" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E201206" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>218</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201206" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14695" e_stop="14478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCC</genome_strand>
        <mrna_strand>GGTTTTGGCGTTCACGCCTCTCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTTCACTGGAAGCCAACTTGTGGCGTGAAATGTATGTCTGATGAAGAAGCTATTAAAGTCGGTGGTACTAATTATAACCACGCGACCAAGGATCTTTACCAGTTAATTGCTGCTGGAAACTATCCTGCGTGGGAGCTTTTTATCCAAACAATGGACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E238505" ref_strand="+" ref_description="SGN-E238505 [cLED-17-O9]">
      <seq>tcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15417" stop="14180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15117" g_stop="15012" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14480" g_length="435"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="541" r_length="435" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E238505" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238505" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15117" e_stop="15012"/>
          <exon e_start="14914" e_stop="14480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGAC</genome_strand>
        <mrna_strand>TCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E245746" ref_strand="+" ref_description="SGN-E245746 [cLEF-48-O6]">
      <seq>gtggaagccccgagtctatcagggacattcgtggttttgctgtcaaggtctacaccagagaggtaatttcgtgttaattacttgaacatgaacttaggtcacggaatctttgattgggttttttgtttaaaatgtaatgttttgaattgattgactcagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagccacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaagatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15373" stop="14182"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15073" g_stop="14482" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="592" r_length="592" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E245746" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245746" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15073" e_stop="14482"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGG</genome_strand>
        <mrna_strand>GTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGGTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGCCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAAGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E707718" ref_strand="+" ref_description="SGN-E707718 [FA33DB08]">
      <seq>ccataaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatccttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17068" stop="14184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16769" g_stop="16713" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="154" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="432" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14484" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="863" r_length="431" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E707718" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>863</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16769" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAAT</genome_strand>
        <mrna_strand>CCATAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E207170" ref_strand="+" ref_description="SGN-E207170 [cLEC-30-G14]">
      <seq>ttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15478" stop="14184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15178" g_stop="15012" g_length="167"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="167" r_length="167" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14484" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="598" r_length="431" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E207170" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15178" e_stop="15012"/>
          <exon e_start="14914" e_stop="14484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAAT</genome_strand>
        <mrna_strand>TTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E202005" ref_strand="+" ref_description="SGN-E202005 [cLEC-7-B3]">
      <seq>ggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgctccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatccaaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15341" stop="14184"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15041" g_stop="15012" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14484" g_length="431"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="461" r_length="431" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E202005" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>461</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202005" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15041" e_stop="15012"/>
          <exon e_start="14914" e_stop="14484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAAT</genome_strand>
        <mrna_strand>GGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGCTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E709198" ref_strand="+" ref_description="SGN-E709198 [FA51AA02]">
      <seq>cgatggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatccttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaaactattagagtcggtggtactaatcatagccacgcgaccaagaatctttaccattcaattgctgctggaaactatcctgagtggaagctttttatccaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17065" stop="14189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16767" g_stop="16713" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="0.945"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="152" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="430" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14488" g_length="427"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="857" r_length="427" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E709198" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>857</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E709198" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16767" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14488"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAA</genome_strand>
        <mrna_strand>CGATGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAACTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGAATCTTTACCATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E707320" ref_strand="+" ref_description="SGN-E707320 [FA32CG01]">
      <seq>ccaataggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatccttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaagatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17068" stop="14192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16769" g_stop="16713" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.965"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="154" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="432" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14492" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="855" r_length="423" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E707320" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>855</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707320" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16769" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATC</genome_strand>
        <mrna_strand>CCAATAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAAGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E269124" ref_strand="+" ref_description="SGN-E269124 [cLEI-16-K1]">
      <seq>cgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggtttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15431" stop="14192"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15131" g_stop="15012" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14492" g_length="423"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="544" r_length="424" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E269124" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15131" e_stop="15012"/>
          <exon e_start="14914" e_stop="14492"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGG-TTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATC</genome_strand>
        <mrna_strand>CGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E205898" ref_strand="+" ref_description="SGN-E205898 [cLEC-20-H6]">
      <seq>aacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagcccgcgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagcttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15414" stop="14194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15114" g_stop="15012" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14494" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="525" r_length="421" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E205898" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15114" e_stop="15012"/>
          <exon e_start="14914" e_stop="14494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCC-CGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTA</genome_strand>
        <mrna_strand>AACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCGCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E281720" ref_strand="+" ref_description="SGN-E281720 [cLER-14-A21]">
      <seq>gaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagcttttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15377" stop="14194"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15077" g_stop="15012" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14494" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="487" r_length="421" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E281720" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>487</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E281720" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15077" e_stop="15012"/>
          <exon e_start="14914" e_stop="14494"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTA</genome_strand>
        <mrna_strand>GAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E265209" ref_strand="+" ref_description="SGN-E265209 [cLEI-2-N9]">
      <seq>cgagctcctggcgctcaaacgcctgttatttgtggattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagtggaagctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15431" stop="14196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15131" g_stop="15012" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14496" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="539" r_length="419" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E265209" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15131" e_stop="15012"/>
          <exon e_start="14914" e_stop="14496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTT</genome_strand>
        <mrna_strand>CGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTGGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E276884" ref_strand="+" ref_description="SGN-E276884 [cLEN-14-B10]">
      <seq>cgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaagatctttacgattcaattgctgctggaaactatcctgagtggaagctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15431" stop="14196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15131" g_stop="15012" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="120" r_length="120" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14496" g_length="419"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="539" r_length="419" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E276884" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15131" e_stop="15012"/>
          <exon e_start="14914" e_stop="14496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTT</genome_strand>
        <mrna_strand>CGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAAGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E335631" ref_strand="+" ref_description="SGN-E335631 [cTOE-8-M14]">
      <seq>tttaattgagatgcttagtcgttccctgacacgatttgagcattgaaaccaaattcaaagtcacacattcaggagaactggaggatacttgatttcttctagttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtcttccaacggattacagacacatggaaggttatggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgagatgtatgtctgacgaagaagctattagagtcggtggtgctaatcatagccacgcgaccaaggatgtttacgagtcaattgctgctggaaactatcctgagtggaagctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15175" stop="14196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14875" g_stop="14496" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="380" r_length="380" r_score="0.963"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E335631" ref_strand="+">
        <total_alignment_score>0.963</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14875" e_stop="14496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTT</genome_strand>
        <mrna_strand>TTTAATTGAGATGCTTAGTCGTTCCCTGACACGATTTGAGCATTGAAACCAAATTCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTAGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTTCCAACGGATTACAGACACATGGAAGGTTATGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAGATGTATGTCTGACGAAGAAGCTATTAGAGTCGGTGGTGCTAATCATAGCCACGCGACCAAGGATGTTTACGAGTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E704458" ref_strand="+" ref_description="SGN-E704458 [FA24BD10]">
      <seq>agatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatccttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgacccaagatctttacgattcaattgctgctggaaactatcctgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17072" stop="14205"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16772" g_stop="16713" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="157" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="435" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14505" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="845" r_length="410" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E704458" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>845</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16772" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14505"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTG</genome_strand>
        <mrna_strand>AGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCCAAGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E272111" ref_strand="+" ref_description="SGN-E272111 [cLEN-4-K15]">
      <seq>tcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15453" stop="14206"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15153" g_stop="15012" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14506" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="551" r_length="409" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E272111" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>551</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15153" e_stop="15012"/>
          <exon e_start="14914" e_stop="14506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGT</genome_strand>
        <mrna_strand>TCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E722478" ref_strand="+" ref_description="SGN-E722478 [FC17BF02]">
      <seq>attggcggccaaatcggccgaaatgacaccaaacataaactctttatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatccttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattgctgctggaaactatcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17094" stop="14209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16794" g_stop="16713" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="107" r_length="82" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="204" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="482" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14509" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="888" r_length="406" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E722478" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>863</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E722478" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16794" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCAAACATAAACTGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTG</genome_strand>
        <mrna_strand>ACACCAAACATAAACTCTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E700052" ref_strand="+" ref_description="SGN-E700052 [FA11DH07]">
      <seq>ttatatatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatccttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaagaaaaaactattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgaattcattgctgctggaaactat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17076" stop="14213"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16776" g_stop="16713" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="161" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="439" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14513" g_length="402"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="841" r_length="402" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E700052" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700052" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16776" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTAT</genome_strand>
        <mrna_strand>TTATATATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAAGAAAAAACTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGAATTCATTGCTGCTGGAAACTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E739791" ref_strand="+" ref_description="SGN-E739791 [LC18DE02]">
      <seq>ccaattagctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttccgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatccttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattaaagtcggtggtactaatcataaccacgccaccaaggatctttacgattcaattgctgctgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17062" stop="14219"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16769" g_stop="16713" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="154" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="432" r_length="278" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14519" g_length="396"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="828" r_length="396" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E739791" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>828</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E739791" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16769" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14519"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGA</genome_strand>
        <mrna_strand>CCAATTAGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCCGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAAAGTCGGTGGTACTAATCATAACCACGCCACCAAGGATCTTTACGATTCAATTGCTGCTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E205834" ref_strand="+" ref_description="SGN-E205834 [cLEC-20-I16]">
      <seq>ctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15434" stop="14227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15134" g_stop="15012" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14527" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="511" r_length="388" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E205834" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15134" e_stop="15012"/>
          <exon e_start="14914" e_stop="14527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTG</genome_strand>
        <mrna_strand>CTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E204048" ref_strand="+" ref_description="SGN-E204048 [cLEC-22-K6]">
      <seq>aaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcgggggtactaatcatagccacgcgaccaatgatctttacgattcaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15415" stop="14227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15115" g_stop="15012" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14527" g_length="388"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="492" r_length="388" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E204048" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204048" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15115" e_stop="15012"/>
          <exon e_start="14914" e_stop="14527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTG</genome_strand>
        <mrna_strand>AAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGGGGTACTAATCATAGCCACGCGACCAATGATCTTTACGATTCAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E279987" ref_strand="+" ref_description="SGN-E279987 [cLEL-7-E3]">
      <seq>gcacgaggtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgacttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattaaagtcngtggtactaatcatagccacgcgacccaggatctttacgattcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15162" stop="14228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14865" g_stop="14528" g_length="338"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="338" r_length="338" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E279987" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>338</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E279987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14865" e_stop="14528"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATT</genome_strand>
        <mrna_strand>GCACGAGGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGACTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAAAGTCNGTGGTACTAATCATAGCCACGCGACCCAGGATCTTTACGATTCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E274742" ref_strand="+" ref_description="SGN-E274742 [cLEN-13-B10]">
      <seq>tatttgtcgattctctactgttgtccatgagcgtggaagccccgagtctatcanggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15405" stop="14230"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15105" g_stop="15012" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="94" r_length="94" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14530" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="479" r_length="385" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E274742" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274742" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15105" e_stop="15012"/>
          <exon e_start="14914" e_stop="14530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAA</genome_strand>
        <mrna_strand>TATTTGTCGATTCTCTACTGTTGTCCATGAGCGTGGAAGCCCCGAGTCTATCANGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E207559" ref_strand="+" ref_description="SGN-E207559 [cLEC-32-C3]">
      <seq>tactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacgcgaccaaggatctttacgattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15390" stop="14232"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15090" g_stop="15012" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14532" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="462" r_length="383" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E207559" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15090" e_stop="15012"/>
          <exon e_start="14914" e_stop="14532"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTC</genome_strand>
        <mrna_strand>TACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E201882" ref_strand="+" ref_description="SGN-E201882 [cLEC-18-C21]">
      <seq>gagaagatacctgaacgtgttgttcatgctagaggtgcgtagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15533" stop="14254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15233" g_stop="15012" g_length="222"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14554" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="584" r_length="361" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E201882" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>583</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15233" e_stop="15012"/>
          <exon e_start="14914" e_stop="14554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGC-TAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACG</genome_strand>
        <mrna_strand>GAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCGTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E266114" ref_strand="+" ref_description="SGN-E266114 [cLEI-6-J1]">
      <seq>tcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcatagccacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15399" stop="14254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15099" g_stop="15012" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14554" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="449" r_length="361" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E266114" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>449</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15099" e_stop="15012"/>
          <exon e_start="14914" e_stop="14554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACG</genome_strand>
        <mrna_strand>TCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E201021" ref_strand="+" ref_description="SGN-E201021 [cLEC-5-D20]">
      <seq>attcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagcggtggtactaatcatagcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15109" stop="14257"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14809" g_stop="14557" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="252" r_length="252" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E201021" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>253</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E201021" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14809" e_stop="14557"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCC</genome_strand>
        <mrna_strand>ATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAG-CGGTGGTACTAATCATAGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E302013" ref_strand="+" ref_description="SGN-E302013 [cLEX-3-G20]">
      <seq>cgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattagagtcggtggtactaatcata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15420" stop="14260"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15120" g_stop="15012" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14560" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="464" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E302013" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15120" e_stop="15012"/>
          <exon e_start="14914" e_stop="14560"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATA</genome_strand>
        <mrna_strand>CGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E702871" ref_strand="+" ref_description="SGN-E702871 [FA19DG02]">
      <seq>gtttatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatccttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttcccactggaacccaacttgtggtgtgaaatgtatgtctgaggaagaagctattaaagtcggtggtactaatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17078" stop="14261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16778" g_stop="16713" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="163" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="441" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14561" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="442" r_stop="796" r_length="355" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E702871" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>795</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702871" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16778" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTT-CCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCAT</genome_strand>
        <mrna_strand>GTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCCACTGGAACCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAAAGTCGGTGGTACTAATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E703405" ref_strand="+" ref_description="SGN-E703405 [FA21BF05]">
      <seq>ttatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatccttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaaaaaactattagagtcggtggtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17076" stop="14268"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16776" g_stop="16713" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="161" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="439" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14568" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="786" r_length="347" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E703405" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>786</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E703405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16776" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14568"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTAC</genome_strand>
        <mrna_strand>TTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAAAAACTATTAGAGTCGGTGGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E245683" ref_strand="+" ref_description="SGN-E245683 [cLEF-48-I13]">
      <seq>ggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctattag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15371" stop="14280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15071" g_stop="15012" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14580" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="395" r_length="335" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E245683" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15071" e_stop="15012"/>
          <exon e_start="14914" e_stop="14580"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAG</genome_strand>
        <mrna_strand>GGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E243689" ref_strand="+" ref_description="SGN-E243689 [cLED-35-A15]">
      <seq>ggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgactcccaacggattacagacacatggaaggatttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagctatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15351" stop="14282"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15051" g_stop="15012" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14582" g_length="333"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="373" r_length="333" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E243689" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>373</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15051" e_stop="15012"/>
          <exon e_start="14914" e_stop="14582"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATT</genome_strand>
        <mrna_strand>GGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGACTCCCAACGGATTACAGACACATGGAAGGATTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E253244" ref_strand="+" ref_description="SGN-E253244 [cLEG-26-C11]">
      <seq>gctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15506" stop="14284"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15206" g_stop="15012" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="195" r_length="195" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14584" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="196" r_stop="526" r_length="331" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E253244" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15206" e_stop="15012"/>
          <exon e_start="14914" e_stop="14584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTA</genome_strand>
        <mrna_strand>GCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E278985" ref_strand="+" ref_description="SGN-E278985 [cLER-2-P11]">
      <seq>tctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgaggaagaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15394" stop="14286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15094" g_stop="15012" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14586" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="412" r_length="329" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E278985" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>412</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E278985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15094" e_stop="15012"/>
          <exon e_start="14914" e_stop="14586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGC</genome_strand>
        <mrna_strand>TCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E249574" ref_strand="+" ref_description="SGN-E249574 [cLEF-56-L22]">
      <seq>tttgatcgcgagaagataccaggacgtgtgtttaatgctttaggtgcccccgctcacggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaagatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaagttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagtttcactggaagccaactggtggtgtgaaatgtatgtctgaggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15542" stop="14291"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15242" g_stop="15012" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14591" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="555" r_length="324" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E249574" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E249574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15242" e_stop="15012"/>
          <exon e_start="14914" e_stop="14591"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAA</genome_strand>
        <mrna_strand>TTTGATCGCGAGAAGATACCAGGACGTGTGTTTAATGCTTTAGGTGCCCCCGCTCACGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAAGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAAGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTTCACTGGAAGCCAACTGGTGGTGTGAAATGTATGTCTGAGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E726916" ref_strand="+" ref_description="SGN-E726916 [LA13AG08]">
      <seq>cgattactgtttatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatccttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17081" stop="14292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16786" g_stop="16713" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="171" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="449" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14592" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="772" r_length="323" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E726916" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726916" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16786" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATAAACTGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGA</genome_strand>
        <mrna_strand>CGATTACTGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E212509" ref_strand="+" ref_description="SGN-E212509 [cLEC-74-O23]">
      <seq>gctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagattgcatacattcgccttcttctaccatgatgtttgtctccccacggattacagacacatggaaggttttggcgttcacccctatcaattgattaacaaagagggggaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctgagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15428" stop="14292"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15128" g_stop="15012" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14592" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="440" r_length="323" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E212509" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>440</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15128" e_stop="15012"/>
          <exon e_start="14914" e_stop="14592"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGA</genome_strand>
        <mrna_strand>GCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGATTGCATACATTCGCCTTCTTCTACCATGATGTTTGTCTCCCCACGGATTACAGACACATGGAAGGTTTTGGCGTTCACCCCTATCAATTGATTAACAAAGAGGGGGAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E723589" ref_strand="+" ref_description="SGN-E723589 [FC20DH06]">
      <seq>aatcggccgaattgacaccaaacataaaccgtttatagatcaaaaggctctctcttcaattcttctttcatctccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatccttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17094" stop="14296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16794" g_stop="16713" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="96" r_length="82" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="193" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="471" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14596" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="790" r_length="319" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E723589" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>776</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16794" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCAAACATAAACTGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTG</genome_strand>
        <mrna_strand>ACACCAAACATAAACCGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATCTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E717718" ref_strand="+" ref_description="SGN-E717718 [FC02CB08]">
      <seq>gggcgattggcggccaatcggccgaattgaccaaacataaactgtttatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaaaatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccaaagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatccttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacaatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17092" stop="14296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16792" g_stop="16713" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="109" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="206" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="207" r_stop="484" r_length="278" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14596" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="803" r_length="319" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E717718" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16792" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAACATAAACTGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTG</genome_strand>
        <mrna_strand>ACCAAACATAAACTGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAAATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAAAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACAATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E704267" ref_strand="+" ref_description="SGN-E704267 [FA23DC07]">
      <seq>aactgtttatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatccttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17082" stop="14296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16782" g_stop="16713" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="167" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="445" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14596" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="764" r_length="319" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E704267" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704267" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16782" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTG</genome_strand>
        <mrna_strand>AACTGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E699506" ref_strand="+" ref_description="SGN-E699506 [FA10BD06]">
      <seq>cgtttatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatccttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17078" stop="14296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16779" g_stop="16713" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="164" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="442" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14596" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="761" r_length="319" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E699506" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>761</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E699506" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16779" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTG</genome_strand>
        <mrna_strand>CGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E717613" ref_strand="+" ref_description="SGN-E717613 [FC02AH12]">
      <seq>cccctttcttgcaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatccttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15771" stop="14296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15471" g_stop="15400" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="349" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14914" g_stop="14596" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="668" r_length="319" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E717613" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>669</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E717613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15471" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTG</genome_strand>
        <mrna_strand>CCCCTTTCTTG-CAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E209930" ref_strand="+" ref_description="SGN-E209930 [cLEC-52-H8]">
      <seq>gcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaaagtatgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15535" stop="14296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15235" g_stop="15012" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="224" r_length="224" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14596" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="543" r_length="319" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E209930" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209930" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15235" e_stop="15012"/>
          <exon e_start="14914" e_stop="14596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTG</genome_strand>
        <mrna_strand>GCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAAAGTATGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E214418" ref_strand="+" ref_description="SGN-E214418 [cLEC-77-O8]">
      <seq>atgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15508" stop="14296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15208" g_stop="15012" g_length="197"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="197" r_length="197" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14596" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="198" r_stop="516" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E214418" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15208" e_stop="15012"/>
          <exon e_start="14914" e_stop="14596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTG</genome_strand>
        <mrna_strand>ATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E245554" ref_strand="+" ref_description="SGN-E245554 [cLEF-43-N24]">
      <seq>tgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15507" stop="14296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15207" g_stop="15012" g_length="196"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="196" r_length="196" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14596" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="515" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E245554" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245554" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15207" e_stop="15012"/>
          <exon e_start="14914" e_stop="14596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTG</genome_strand>
        <mrna_strand>TGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E253446" ref_strand="+" ref_description="SGN-E253446 [cLEG-24-D24]">
      <seq>gctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgccctgttatttgtcgattctctactgttgtccatgaaccgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctaccaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacaccatggaaggttttggcgttcacgccgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15506" stop="14296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15206" g_stop="15012" g_length="195"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14596" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="519" r_length="321" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E253446" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15206" e_stop="15012"/>
          <exon e_start="14914" e_stop="14596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACG-CCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAA-CGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTA-CACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACA-CATGGAAGGTTTTGGCGTTCACG-CGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTG</genome_strand>
        <mrna_strand>GCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACCGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACCACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACCATGGAAGGTTTTGGCGTTCACGCCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E214973" ref_strand="+" ref_description="SGN-E214973 [cLEC-78-H12]">
      <seq>tagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15495" stop="14296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15195" g_stop="15012" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="184" r_length="184" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14596" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="503" r_length="319" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E214973" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214973" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15195" e_stop="15012"/>
          <exon e_start="14914" e_stop="14596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTG</genome_strand>
        <mrna_strand>TAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E209073" ref_strand="+" ref_description="SGN-E209073 [cLEC-38-L18]">
      <seq>tttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttggatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15403" stop="14296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15103" g_stop="15012" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14596" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="412" r_length="320" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E209073" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209073" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15103" e_stop="15012"/>
          <exon e_start="14914" e_stop="14596"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTT-GATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTG</genome_strand>
        <mrna_strand>TTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E378491" ref_strand="+" ref_description="SGN-E378491 [TUS-14-M14]">
      <seq>agtatagatcaaaaggctctctcttctattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17075" stop="14297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16777" g_stop="16713" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.954"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="162" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="440" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14597" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="758" r_length="318" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E378491" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>758</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E378491" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16777" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCT</genome_strand>
        <mrna_strand>AGTATAGATCAAAAGGCTCTCTCTTCTATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E205759" ref_strand="+" ref_description="SGN-E205759 [cLEC-21-J4]">
      <seq>gattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15440" stop="14297"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15140" g_stop="15012" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14597" g_length="318"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="447" r_length="318" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E205759" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15140" e_stop="15012"/>
          <exon e_start="14914" e_stop="14597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCT</genome_strand>
        <mrna_strand>GATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E718424" ref_strand="+" ref_description="SGN-E718424 [FC04CE07]">
      <seq>atcggccgaattgacaccaaacataaactgtttatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatccttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17094" stop="14298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16794" g_stop="16713" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="95" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="192" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="470" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14598" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="787" r_length="317" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E718424" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16794" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCAAACATAAACTGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTC</genome_strand>
        <mrna_strand>ACACCAAACATAAACTGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E720819" ref_strand="+" ref_description="SGN-E720819 [FC11DG10]">
      <seq>aatcggccgaattgaccaaacataaactgtttatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatccttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17092" stop="14298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16792" g_stop="16713" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="94" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="191" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="469" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14598" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="470" r_stop="786" r_length="317" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E720819" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720819" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16792" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAACATAAACTGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTC</genome_strand>
        <mrna_strand>ACCAAACATAAACTGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E723239" ref_strand="+" ref_description="SGN-E723239 [FC19DF01]">
      <seq>aatcggccgaattgacccaaacataaactcgttatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgaaaagatacctgaacgtgttgttcatgctaaaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccaaagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcgggagaactggaggatccttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacaatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17094" stop="14298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16790" g_stop="16713" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="95" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="192" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="470" r_length="278" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14598" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="787" r_length="317" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E723239" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>770</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723239" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16790" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACATAAACTGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTC</genome_strand>
        <mrna_strand>CAAACATAAACTCGTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAAAAGATACCTGAACGTGTTGTTCATGCTAAAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAAAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCGGGAGAACTGGAGGATCCTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACAATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E730598" ref_strand="+" ref_description="SGN-E730598 [LA24CE02]">
      <seq>ccatcagaggaaaaggntctctcttcaattcttctttcatttccttcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatccttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17074" stop="14298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16776" g_stop="16713" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="162" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="440" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14598" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="757" r_length="317" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E730598" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E730598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16776" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAT-AGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTC</genome_strand>
        <mrna_strand>CCATCAGAGGAAAAGGNTCTCTCTTCAATTCTTCTTTCATTTCCTTCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E719377" ref_strand="+" ref_description="SGN-E719377 [FC07CG01]">
      <seq>caaaaggctctctcttcaattcttctttcattctcataaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatccttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcanttgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17068" stop="14298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16768" g_stop="16713" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="153" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="431" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14598" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="748" r_length="317" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E719377" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719377" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16768" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTC</genome_strand>
        <mrna_strand>CAAAAGGCTCTCTCTTCAATTCTTCTTTCATTCTCATAACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCANTTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E290463" ref_strand="+" ref_description="SGN-E290463 [cLES-20-J20]">
      <seq>gacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15546" stop="14298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15246" g_stop="15012" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="235" r_length="235" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14598" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="552" r_length="317" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E290463" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E290463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15246" e_stop="15012"/>
          <exon e_start="14914" e_stop="14598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTC</genome_strand>
        <mrna_strand>GACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E208494" ref_strand="+" ref_description="SGN-E208494 [cLEC-39-K21]">
      <seq>cgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagtttcactggaagccaacttgtggtgtgaaatgtatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15420" stop="14298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15120" g_stop="15012" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="109" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14598" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="426" r_length="317" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E208494" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208494" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15120" e_stop="15012"/>
          <exon e_start="14914" e_stop="14598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTC</genome_strand>
        <mrna_strand>CGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTTCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E200987" ref_strand="+" ref_description="SGN-E200987 [cLEC-5-A10]">
      <seq>ccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttgtggtgtgaaatgtatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15364" stop="14298"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15064" g_stop="15012" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14598" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="370" r_length="317" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E200987" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15064" e_stop="15012"/>
          <exon e_start="14914" e_stop="14598"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTC</genome_strand>
        <mrna_strand>CCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E267148" ref_strand="+" ref_description="SGN-E267148 [cLEI-4-N4]">
      <seq>agatacttgatttcttctcgttccttcctgagagattgcatacattcgccttcttctgcgatgatgtctgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacactcacgggaaagcacattatgtgaagtaccactggaagccaacttgtggtgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15092" stop="14308"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14793" g_stop="14608" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E267148" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>186</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E267148" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14793" e_stop="14608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGA</genome_strand>
        <mrna_strand>AGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGATTGCATACATTCGCCTTCTTCTGCGATGATGTCTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACACTCACGGGAAAGCACATTATGTGAAGTACCACTGGAAGCCAACTTGTGGTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E202015" ref_strand="+" ref_description="SGN-E202015 [cLEC-7-F3]">
      <seq>ggttttgctgacaagttcttctaccagagagggtaactttgatcttggtggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaaggtccactggaagccaacttgtggtgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15216" stop="14309"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15041" g_stop="15012" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14609" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="337" r_length="306" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E202015" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>336</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15041" e_stop="15012"/>
          <exon e_start="14914" e_stop="14609"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTTTTGCTGTCAAGTTCTAC-ACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTG</genome_strand>
        <mrna_strand>GGTTTTGCTGACAAGTTCTTCTACCAGAGAG.................................................................................................GGTAACTTTGATCTTGGTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGGTCCACTGGAAGCCAACTTGTGGTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E723917" ref_strand="+" ref_description="SGN-E723917 [FC22BG07]">
      <seq>cggccgaattgaccaaacataaactgtttatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcaattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccaaagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatccttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaaaccaacttgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17092" stop="14313"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16792" g_stop="16713" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="91" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="188" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="466" r_length="278" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14613" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="467" r_stop="768" r_length="302" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E723917" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>757</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16792" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14613"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCAAACATAAACTGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGG</genome_strand>
        <mrna_strand>ACCAAACATAAACTGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCAATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAAAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAACCAACTTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E718004" ref_strand="+" ref_description="SGN-E718004 [FC03BE06]">
      <seq>aatcggccgaattgacaccaaacataaactgtttatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctaaaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccaagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtgaaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatccttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17094" stop="14316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16794" g_stop="16713" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="96" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="193" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="194" r_stop="471" r_length="278" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14616" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="770" r_length="299" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E718004" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>756</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718004" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16794" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACCAAACATAAACTGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTG</genome_strand>
        <mrna_strand>ACACCAAACATAAACTGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAAAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCAAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGAAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E338146" ref_strand="+" ref_description="SGN-E338146 [cTOE-13-F13]">
      <seq>agtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtattaattgattaacaaagaggggaaagcacattatgtgaagttccactggaagccaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15361" stop="14319"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15061" g_stop="15012" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14619" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="346" r_length="296" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E338146" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338146" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15061" e_stop="15012"/>
          <exon e_start="14914" e_stop="14619"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAAC</genome_strand>
        <mrna_strand>AGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATTAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E269153" ref_strand="+" ref_description="SGN-E269153 [cLEI-16-E16]">
      <seq>cgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15547" stop="14336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15247" g_stop="15012" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14636" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="515" r_length="279" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E269153" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E269153" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15247" e_stop="15012"/>
          <exon e_start="14914" e_stop="14636"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAG</genome_strand>
        <mrna_strand>CGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E252458" ref_strand="+" ref_description="SGN-E252458 [cLEG-12-P22]">
      <seq>tgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgcgagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15558" stop="14338"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15258" g_stop="15012" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14638" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="524" r_length="277" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E252458" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252458" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15258" e_stop="15012"/>
          <exon e_start="14914" e_stop="14638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGA</genome_strand>
        <mrna_strand>TGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCGAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E212751" ref_strand="+" ref_description="SGN-E212751 [cLEC-73-D24]">
      <seq>ttatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaagttttggcgttcacgcgtatcaattgattaacaaagaggggaaagcacattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17076" stop="14341"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16776" g_stop="16713" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="161" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="439" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14641" g_length="274"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="713" r_length="274" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E212751" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16776" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14641"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATG</genome_strand>
        <mrna_strand>TTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAAGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E334975" ref_strand="+" ref_description="SGN-E334975 [cTOE-9-N21]">
      <seq>tctaagtatcgcccatcaagcgcacacgccacccctttcttgaaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagaaacctgaacgtgttgttcatgcctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagcctcctggcgctcaaaccgcctgttatttgtcgattctctcctgttgtccatgaacgtggaagccccgagtctatcagggaccattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatngtccccgtgttctttaatcgtgatgctaaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctaccgatgatgtttgtctcccaacggattacagaccatggaagggttttggcgtccacgcgtatcaattgattaacaagaggggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15798" stop="14350"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15502" g_stop="15400" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.942"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="384" r_length="282" r_score="0.964"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14914" g_stop="14650" g_length="265"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="651" r_length="267" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E334975" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15502" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATG-CTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAG-CTCCTGGCGCTCAAA-CGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGA-CATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAAT-GTCCCCGTGTTCTTTAATCGTGATGCT-AAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTA-CGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAA-GGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAG</genome_strand>
        <mrna_strand>TCTAAGTATCGCCCATCAAGCGCACACGCCACCCCTTTCTTGA-AACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGAAACCTGAACGTGTTGTTCATGCCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCCTCCTGGCGCTCAAACCGCCTGTTATTTGTCGATTCTCTCCTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACCATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATNGTCCCCGTGTTCTTTAATCGTGATGCTAAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACCGATGATGTTTGTCTCCCAACGGATTACAGAC-CATGGAAGGGTTTTGGCGTCCACGCGTATCAATTGATTAAC-AAGAGGGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E231026" ref_strand="+" ref_description="SGN-E231026 [cLED-5-O14]">
      <seq>gacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaattgattaacaaagagggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15350" stop="14354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15050" g_stop="15012" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14654" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="300" r_length="261" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E231026" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>300</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15050" e_stop="15012"/>
          <exon e_start="14914" e_stop="14654"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGG</genome_strand>
        <mrna_strand>GACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E209015" ref_strand="+" ref_description="SGN-E209015 [cLEC-38-F9]">
      <seq>tttctccgagctcctggcgctcaaacgcctgttatttgtcgattctgtactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgagatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgattgttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtgtcaattgattaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15437" stop="14361"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15137" g_stop="15012" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="126" r_length="126" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14661" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="380" r_length="254" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E209015" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15137" e_stop="15012"/>
          <exon e_start="14914" e_stop="14661"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAA</genome_strand>
        <mrna_strand>TTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTGTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGAGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATTGTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTGTCAATTGATTAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E215047" ref_strand="+" ref_description="SGN-E215047 [cLEC-78-C16]">
      <seq>ttatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcacgcgtatcaaattgattaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17076" stop="14363"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16776" g_stop="16713" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="161" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="439" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14663" g_length="252"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="692" r_length="253" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E215047" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E215047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16776" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATC-AATTGATTAAC</genome_strand>
        <mrna_strand>TTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAAATTGATTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E322589" ref_strand="+" ref_description="SGN-E322589 [cTOB-26-A21]">
      <seq>agatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcangagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaaggtttggcgttcacgcgtatcaattgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17072" stop="14366"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16772" g_stop="16713" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="157" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="435" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14666" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="684" r_length="249" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E322589" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E322589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16772" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATT</genome_strand>
        <mrna_strand>AGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCANGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAAGGTTTGGCGTTCACGCGTATCAATTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E719317" ref_strand="+" ref_description="SGN-E719317 [FC07BH11]">
      <seq>gacaccaaacataaaccgtttatagatcaaaaggctctctcttcaattcttctttcacttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaaaaaacctgaaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaaatcattccctgacacgattcatgcattgaaaccaaatccaaagtcacacattcaggacaactggaggatccttgatttcttctcgttccttcctgagagtttgcatacattcnccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttggcgttcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17094" stop="14381"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16795" g_stop="16713" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="83" r_length="83" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="84" r_stop="180" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="459" r_length="279" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14681" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="460" r_stop="693" r_length="234" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E719317" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E719317" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16795" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACACCAAACATAAACTGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTG-AACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCAC</genome_strand>
        <mrna_strand>GACACCAAACATAAACCGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCACTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAAAAACCTGAAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAATCATTCCCTGACACGATTCATGCATTGAAACCAAATCCAAAGTCACACATTCAGGACAACTGGAGGATCCTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCNCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E718012" ref_strand="+" ref_description="SGN-E718012 [FC03BF03]">
      <seq>aaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctaaagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctaaaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccaagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtgaaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagaaagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatccttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatggaaggttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17066" stop="14388"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16766" g_stop="16713" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="151" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="429" r_length="278" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14688" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="656" r_length="227" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E718012" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718012" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16766" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14688"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGG</genome_strand>
        <mrna_strand>AAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAAAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAAAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCAAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGAAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAAAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATCCTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E339517" ref_strand="+" ref_description="SGN-E339517 [cTOE-16-M15]">
      <seq>tcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattacagacacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17069" stop="14399"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16769" g_stop="16713" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="154" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="432" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14699" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="648" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E339517" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339517" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16769" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14699"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATG</genome_strand>
        <mrna_strand>TCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E335409" ref_strand="+" ref_description="SGN-E335409 [cTOE-2-F15]">
      <seq>atagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17074" stop="14408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16774" g_stop="16713" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="159" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="437" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14708" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="644" r_length="207" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E335409" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>644</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16774" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTAC</genome_strand>
        <mrna_strand>ATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E339670" ref_strand="+" ref_description="SGN-E339670 [cTOE-16-I3]">
      <seq>aaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17067" stop="14408"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16767" g_stop="16713" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="152" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="430" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14708" g_length="207"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="637" r_length="207" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E339670" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E339670" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16767" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTAC</genome_strand>
        <mrna_strand>AAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E328394" ref_strand="+" ref_description="SGN-E328394 [cTOC-21-B13]">
      <seq>tttatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaacggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17077" stop="14410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16777" g_stop="16713" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="162" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="440" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14710" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="645" r_length="205" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E328394" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E328394" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16777" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATT</genome_strand>
        <mrna_strand>TTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E342630" ref_strand="+" ref_description="SGN-E342630 [cTOF-7-B15]">
      <seq>cttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggaggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaacggattctttgaagttactcatgacatttctcatcttacttgtgctgattttatacgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgatggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgagcatcgaaaccaaatccaaagtcacacattcacgagaactggaggatacttgatttcttctcgttccttactgagagtctgcatacattcgccttcttctacgatgatgattgactaccaacggatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17047" stop="14410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16747" g_stop="16713" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="132" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="410" r_length="278" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14710" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="615" r_length="205" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E342630" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>615</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342630" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16747" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATT</genome_strand>
        <mrna_strand>CTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGAGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAACGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTATACGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGATGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGAGCATCGAAACCAAATCCAAAGTCACACATTCACGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTACTGAGAGTCTGCATACATTCGCCTTCTTCTACGATGATGATTGACTACCAACGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E331974" ref_strand="+" ref_description="SGN-E331974 [cTOD-16-D15]">
      <seq>tttatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgtctcccaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17077" stop="14415"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16777" g_stop="16713" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="162" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="440" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14715" g_length="200"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="640" r_length="200" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E331974" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E331974" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16777" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14715"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAAC</genome_strand>
        <mrna_strand>TTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E211316" ref_strand="+" ref_description="SGN-E211316 [cLEC-70-L15]">
      <seq>aaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggangatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgtttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17065" stop="14423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16765" g_stop="16713" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="150" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="151" r_stop="428" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14723" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="620" r_length="192" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E211316" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211316" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16765" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGT</genome_strand>
        <mrna_strand>AAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGANGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E247917" ref_strand="+" ref_description="SGN-E247917 [cLEF-47-N11]">
      <seq>atagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17074" stop="14427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16774" g_stop="16713" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="159" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="437" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14727" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="625" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E247917" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247917" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16774" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGT</genome_strand>
        <mrna_strand>ATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E246426" ref_strand="+" ref_description="SGN-E246426 [cLEF-52-I4]">
      <seq>aaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttctacgatgatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17066" stop="14427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16766" g_stop="16713" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="151" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="429" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14727" g_length="188"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="617" r_length="188" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E246426" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246426" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16766" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGT</genome_strand>
        <mrna_strand>AAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E327664" ref_strand="+" ref_description="SGN-E327664 [cTOC-20-L20]">
      <seq>atagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggtattgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcangagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17074" stop="14436"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16774" g_stop="16713" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="159" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="437" r_length="278" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14736" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="616" r_length="179" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E327664" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16774" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTA</genome_strand>
        <mrna_strand>ATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTATTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCANGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E317788" ref_strand="+" ref_description="SGN-E317788 [cTOA-30-I6]">
      <seq>tgtttatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttcctttcctgagagtttgcatacattcgccttcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17079" stop="14438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16779" g_stop="16713" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="164" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="442" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14738" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="620" r_length="178" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E317788" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E317788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16779" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCC-TTCCTGAGAGTTTGCATACATTCGCCTTCTTC</genome_strand>
        <mrna_strand>TGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTTCCTGAGAGTTTGCATACATTCGCCTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E207682" ref_strand="+" ref_description="SGN-E207682 [cLEC-32-H14]">
      <seq>ttatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttcctgagagtttgcatacattcgccttcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17076" stop="14438"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16776" g_stop="16713" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="161" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="439" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14738" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="616" r_length="177" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E207682" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>616</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16776" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14738"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTC</genome_strand>
        <mrna_strand>TTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E723853" ref_strand="+" ref_description="SGN-E723853 [FC22AG08]">
      <seq>gaccaaacataaactgtctatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatgaatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttgaacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcaagaacatacctgaacgtgttgttcatgctacaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgagctgattttctccgagctcctggcgctcaaacacctgttatttgtcaattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccatagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgagatgctaaaccgttccctgacacaattcgtgcattgaaaccaaatccaaagtcacacattcaggaaaactggaggaaccttgatttcttctcgttccttcccgaaagtttgcatacattcgccttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17092" stop="14441"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16793" g_stop="16713" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="178" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="456" r_length="278" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14741" g_length="174"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="630" r_length="174" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E723853" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>630</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E723853" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16793" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14741"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCAAACATAAACTGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTC</genome_strand>
        <mrna_strand>GACCAAACATAAACTGTCTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGAATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGAACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCAAGAACATACCTGAACGTGTTGTTCATGCTACAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGAGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACACCTGTTATTTGTCAATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCATAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGAGATGCTAAACCGTTCCCTGACACAATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAAAACTGGAGGAACCTTGATTTCTTCTCGTTCCTTCCCGAAAGTTTGCATACATTCGCCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E212752" ref_strand="+" ref_description="SGN-E212752 [cLEC-73-F4]">
      <seq>ttatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaacccaaatcaaagtcacacattcangagaactggangatacttgatttcttctcgttccttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17076" stop="14464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16776" g_stop="16713" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="161" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="439" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14764" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="590" r_length="151" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E212752" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>590</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16776" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTG</genome_strand>
        <mrna_strand>TTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCCAAATCAAAGTCACACATTCANGAGAACTGGANGATACTTGATTTCTTCTCGTTCCTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E718765" ref_strand="+" ref_description="SGN-E718765 [FC05DA02]">
      <seq>tatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctaaagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaaaatacctgaacgtgttgttcatgctaaaggtgctaatgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgacaattctctactgttgtccatgaacgtggaagccccgagtctatcaggaacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcttgatgctaagtcgttccctgacacaattcgtgcattgaaaccaaatccaaagtcacacattcaggaaaactgaaggatccttgatttcttctcgttccttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15796" stop="14464"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="375" r_length="278" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14914" g_stop="14764" g_length="151"/>
          <reference_exon_boundary r_type="cDNA" r_start="376" r_stop="526" r_length="151" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E718765" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E718765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14764"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTG</genome_strand>
        <mrna_strand>TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAAAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAAATACCTGAACGTGTTGTTCATGCTAAAGGTGCTAATGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGACAATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGAACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCTTGATGCTAAGTCGTTCCCTGACACAATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAAAACTGAAGGATCCTTGATTTCTTCTCGTTCCTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E335311" ref_strand="+" ref_description="SGN-E335311 [cTOE-1-D20]">
      <seq>gatcaaaaggctctctcttcaattcttctttcatttccccaccatggatccctctaagtatcgcccatcaagccgcactacgacaccccctttcttgacaaaaacgctggtggtcctgtgtaaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggactactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaaccgccctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcgttccttctgaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17071" stop="14459"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16771" g_stop="16713" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="0.83"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="156" r_length="98" r_score="0.907"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="436" r_length="280" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14768" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="583" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E335311" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335311" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16771" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAG-CGCA-TACGACA-CCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAA-CG-CCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTT</genome_strand>
        <mrna_strand>GATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCC-CCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCCGCACTACGACACCCCCTTTCTTGACAA-AAACGCTGGTGGTCCTGTGTA-AACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGACTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACCGCCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E248380" ref_strand="+" ref_description="SGN-E248380 [cLEG-1-M3]">
      <seq>tcaattcttctttcatttccatcaccatggatccctgtaagtattgnccatcaagcgcataccacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccacagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaaatcacacattcaagagaactggaggatacttgatttcttctcgttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17053" stop="14471"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16753" g_stop="16713" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="138" r_length="97" r_score="0.969"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="416" r_length="278" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14771" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="560" r_length="144" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E248380" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248380" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16753" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTC</genome_strand>
        <mrna_strand>TCAATTCTTCTTTCATTTCCATCACCATGGATCCCTGTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGNCCATCAAGCGCATACCACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCACAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAATCACACATTCAAGAGAACTGGAGGATACTTGATTTCTTCTCGTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E338503" ref_strand="+" ref_description="SGN-E338503 [cTOE-15-H4]">
      <seq>tggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15798" stop="14474"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="111" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="389" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14914" g_stop="14774" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="530" r_length="141" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E338503" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338503" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14774"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCG</genome_strand>
        <mrna_strand>TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E340951" ref_strand="+" ref_description="SGN-E340951 [cTOF-5-K16]">
      <seq>aactgttcatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgtagctcatgctagaggtgctagtgctaacggattctttgaagctactcatgacatttctcatcttacttgtgctgagtttctccgagctcctggcgctcaaacgcctggtattagtacattctctactgatgtccatgaacgaggaagccccgagtctatcaaggacattcgagggtttgctgtcaagttctacaccacagagggtaactgtgatcttgttggaaacactgtgcccgtgatctttaatcgtgatgctaagtcgttccctgacacgactcgtgcattgaaaccagatccgaagtcacacattcaggagaactggaggatactagatatcttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17082" stop="14475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16782" g_stop="16713" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="167" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="445" r_length="278" r_score="0.946"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14775" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="585" r_length="140" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E340951" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E340951" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16782" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTC</genome_strand>
        <mrna_strand>AACTGTTCATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTAGCTCATGCTAGAGGTGCTAGTGCTAACGGATTCTTTGAAGCTACTCATGACATTTCTCATCTTACTTGTGCTGAGTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGGTATTAGTACATTCTCTACTGATGTCCATGAACGAGGAAGCCCCGAGTCTATCAAGGACATTCGAGGGTTTGCTGTCAAGTTCTACACCACAGAG.................................................................................................GGTAACTGTGATCTTGTTGGAAACACTGTGCCCGTGATCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGACTCGTGCATTGAAACCAGATCCGAAGTCACACATTCAGGAGAACTGGAGGATACTAGATATCTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E246706" ref_strand="+" ref_description="SGN-E246706 [cLEF-45-O4]">
      <seq>ttatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatttttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17076" stop="14475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16776" g_stop="16713" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="161" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="439" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14775" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="579" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E246706" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>579</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246706" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16776" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTC</genome_strand>
        <mrna_strand>TTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATTTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E243026" ref_strand="+" ref_description="SGN-E243026 [cLEF-1-J7]">
      <seq>atagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatactngatttcttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17074" stop="14475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16774" g_stop="16713" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="159" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="437" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14775" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="577" r_length="140" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E243026" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243026" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16774" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTC</genome_strand>
        <mrna_strand>ATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTNGATTTCTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E245718" ref_strand="+" ref_description="SGN-E245718 [cLEF-48-G6]">
      <seq>atagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17074" stop="14475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16774" g_stop="16713" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="159" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="437" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14775" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="577" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E245718" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16774" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTC</genome_strand>
        <mrna_strand>ATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E206607" ref_strand="+" ref_description="SGN-E206607 [cLEC-31-M14]">
      <seq>tcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15743" stop="14475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15443" g_stop="15400" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="322" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14914" g_stop="14775" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="462" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E206607" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206607" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15443" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTC</genome_strand>
        <mrna_strand>TCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E200228" ref_strand="+" ref_description="SGN-E200228 [cLEC-12-D16]">
      <seq>tgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttcttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15387" stop="14475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15087" g_stop="15012" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="76" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14775" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="77" r_stop="216" r_length="140" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E200228" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>216</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15087" e_stop="15012"/>
          <exon e_start="14914" e_stop="14775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTC</genome_strand>
        <mrna_strand>TGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E213247" ref_strand="+" ref_description="SGN-E213247 [cLEC-72-J24]">
      <seq>ttatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcangagaactggangatacttgatttcttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17076" stop="14476"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16776" g_stop="16713" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="161" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="439" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14776" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="578" r_length="139" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E213247" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>578</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213247" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16776" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCT</genome_strand>
        <mrna_strand>TTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCANGAGAACTGGANGATACTTGATTTCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E336938" ref_strand="+" ref_description="SGN-E336938 [cTOE-5-K23]">
      <seq>atagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaagagaactggaggatacttgatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17074" stop="14480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16774" g_stop="16713" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="159" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="437" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14780" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="572" r_length="135" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E336938" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>572</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16774" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTC</genome_strand>
        <mrna_strand>ATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAAGAGAACTGGAGGATACTTGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E292751" ref_strand="+" ref_description="SGN-E292751 [cLET-11-D10]">
      <seq>aagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15785" stop="14480"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15485" g_stop="15400" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="364" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14914" g_stop="14780" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="499" r_length="135" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E292751" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292751" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15485" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTC</genome_strand>
        <mrna_strand>AAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E206133" ref_strand="+" ref_description="SGN-E206133 [cLEC-29-D12]">
      <seq>ccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtgctgtgtacaacaatgtttggtccttgactgttgggcgtggagggcctgttctgcgtgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaaaggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccatatccaaagtcacacattcacgagaactggaggatacttgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15790" stop="14482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15490" g_stop="15400" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="0.88"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="369" r_length="278" r_score="0.993"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14914" g_stop="14782" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="502" r_length="133" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E206133" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15490" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14782"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATT</genome_strand>
        <mrna_strand>CCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTGCTGTGTACAACAATGTTTGGTCCTTGACTGTTGGGCGTGGAG..............................................................................................................GGCCTGTTCTGCGTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAAGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCATATCCAAAGTCACACATTCACGAGAACTGGAGGATACTTGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E336118" ref_strand="+" ref_description="SGN-E336118 [cTOE-12-C7]">
      <seq>aggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaaagctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgccagaagatacctgaacgtgtagttcatgctacaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgtgctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17064" stop="14483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16764" g_stop="16713" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="52" r_length="52" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="53" r_stop="149" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="150" r_stop="427" r_length="278" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14783" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="559" r_length="132" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E336118" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16764" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGAT</genome_strand>
        <mrna_strand>AGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAAAGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCCAGAAGATACCTGAACGTGTAGTTCATGCTACAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTGCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E247202" ref_strand="+" ref_description="SGN-E247202 [cLEF-46-K9]">
      <seq>tcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggatacttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15510" stop="14483"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15210" g_stop="15012" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14783" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="331" r_length="132" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E247202" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247202" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15210" e_stop="15012"/>
          <exon e_start="14914" e_stop="14783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGAT</genome_strand>
        <mrna_strand>TCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E239969" ref_strand="+" ref_description="SGN-E239969 [cLED-29-J9]">
      <seq>tcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactggaggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15417" stop="14490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15117" g_stop="15012" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14790" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="231" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E239969" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>231</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15117" e_stop="15012"/>
          <exon e_start="14914" e_stop="14790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGAT</genome_strand>
        <mrna_strand>TCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E207179" ref_strand="+" ref_description="SGN-E207179 [cLEC-30-K14]">
      <seq>tatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17075" stop="14496"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16775" g_stop="16713" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="160" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="438" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14796" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="557" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E207179" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16775" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14796"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTG</genome_strand>
        <mrna_strand>TATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E247879" ref_strand="+" ref_description="SGN-E247879 [cLEF-47-K10]">
      <seq>atagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattcaggagaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17074" stop="14497"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16774" g_stop="16713" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="159" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="437" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14797" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="555" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E247879" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247879" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16774" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14797"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACT</genome_strand>
        <mrna_strand>ATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E292541" ref_strand="+" ref_description="SGN-E292541 [cLET-16-C20]">
      <seq>tttatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17077" stop="14505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16777" g_stop="16713" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="162" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="440" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14805" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="550" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E292541" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E292541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16777" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCA</genome_strand>
        <mrna_strand>TTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E206618" ref_strand="+" ref_description="SGN-E206618 [cLEC-31-D5]">
      <seq>tcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17069" stop="14505"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16769" g_stop="16713" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="154" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="432" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14805" g_length="110"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="542" r_length="110" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E206618" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206618" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16769" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14805"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCA</genome_strand>
        <mrna_strand>TCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E335891" ref_strand="+" ref_description="SGN-E335891 [cTOE-6-L4]">
      <seq>tttatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17077" stop="14508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16777" g_stop="16713" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="162" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="440" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14808" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="547" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E335891" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>547</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16777" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACAT</genome_strand>
        <mrna_strand>TTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E202702" ref_strand="+" ref_description="SGN-E202702 [cLEC-19-L14]">
      <seq>atagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17074" stop="14508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16774" g_stop="16713" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="159" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="437" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14808" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="544" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E202702" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16774" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACAT</genome_strand>
        <mrna_strand>ATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E276103" ref_strand="+" ref_description="SGN-E276103 [cLEN-12-L9]">
      <seq>tctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaaaggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17060" stop="14508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16760" g_stop="16713" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="145" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="146" r_stop="423" r_length="278" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14808" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="424" r_stop="530" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E276103" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276103" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16760" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACAT</genome_strand>
        <mrna_strand>TCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAAGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E247405" ref_strand="+" ref_description="SGN-E247405 [cLEF-46-P11]">
      <seq>tcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaaaggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17053" stop="14508"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16753" g_stop="16713" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="138" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="416" r_length="278" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14808" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="523" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E247405" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247405" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16753" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14808"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACAT</genome_strand>
        <mrna_strand>TCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAAGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E206886" ref_strand="+" ref_description="SGN-E206886 [cLEC-33-F22]">
      <seq>atagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaattatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaaccaaatccaaagtcacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17074" stop="14509"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16774" g_stop="16713" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="159" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="437" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14809" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="543" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E206886" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>543</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16774" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14809"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACA</genome_strand>
        <mrna_strand>ATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E212220" ref_strand="+" ref_description="SGN-E212220 [cLEC-75-A8]">
      <seq>ttatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactggtgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagaaaaggtaactttgatcttgttggaaacaatgtccccgtggtctttaatcgtgatgctaagtccttccctgacacgattcgtgcattgaaaccaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17076" stop="14522"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16776" g_stop="16713" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="161" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="439" r_length="278" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14822" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="532" r_length="93" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E212220" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212220" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16776" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14822"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAAT</genome_strand>
        <mrna_strand>TTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGGTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAAAA.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGGTCTTTAATCGTGATGCTAAGTCCTTCCCTGACACGATTCGTGCATTGAAACCAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E333227" ref_strand="+" ref_description="SGN-E333227 [cTOD-20-B23]">
      <seq>caattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17052" stop="14528"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16752" g_stop="16713" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="40" r_length="40" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="137" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="415" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14828" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="502" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E333227" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333227" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16752" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14828"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAA</genome_strand>
        <mrna_strand>CAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E336562" ref_strand="+" ref_description="SGN-E336562 [cTOE-4-K11]">
      <seq>atagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgggatgctaaatcgttccctgacacgattcgtgcattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17074" stop="14529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16774" g_stop="16713" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="159" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="437" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14829" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="523" r_length="86" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E336562" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16774" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14829"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAA</genome_strand>
        <mrna_strand>ATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGGGATGCTAAATCGTTCCCTGACACGATTCGTGCATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E308806" ref_strand="+" ref_description="SGN-E308806 [cLEZ-14-B3]">
      <seq>ttatagatcaaaaggctctctctgcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgcattga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17076" stop="14530"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16776" g_stop="16713" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="161" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="439" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14830" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="524" r_length="85" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E308806" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E308806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16776" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGA</genome_strand>
        <mrna_strand>TTATAGATCAAAAGGCTCTCTCTGCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E245351" ref_strand="+" ref_description="SGN-E245351 [cLEF-44-L20]">
      <seq>agatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgattcgtgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17072" stop="14534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16772" g_stop="16713" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="157" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="435" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14834" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="516" r_length="81" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E245351" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16772" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCA</genome_strand>
        <mrna_strand>AGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E302878" ref_strand="+" ref_description="SGN-E302878 [cLEW-26-I21]">
      <seq>gcaaaagctctctcttcaattcttcttcatttccatcaccatggatccctctaatatcgggggtcaagcgcatactacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17068" stop="14540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16769" g_stop="16713" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="151" r_length="97" r_score="0.948"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="429" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14840" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="504" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E302878" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E302878" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16769" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATT</genome_strand>
        <mrna_strand>GCAAAAG-CTCTCTCTTCAATTCTTC-TTCATTTCCATCACCATGGATCCCTCTAA-................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGGGGGTCAAGCGCATACTACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E341272" ref_strand="+" ref_description="SGN-E341272 [cTOE-22-D1]">
      <seq>ctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacgatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17061" stop="14540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16761" g_stop="16713" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="146" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="424" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14840" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="499" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E341272" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E341272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16761" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14840"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATT</genome_strand>
        <mrna_strand>CTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E207995" ref_strand="+" ref_description="SGN-E207995 [cLEC-34-L16]">
      <seq>ttatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaacggattctttgaagtgtactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctgtactgtagtccatgaacgtggaagccccgagtctatcatggacattcggggntttgctgtcaagttctacaccacagagggtaactttgatcttgttggaaacaacgtccccgtgttctttaatcgtgatgctaagtcgttccctgacacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17076" stop="14542"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16776" g_stop="16713" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="161" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="440" r_length="279" r_score="0.968"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14842" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="513" r_length="73" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E207995" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>512</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E207995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16776" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGT-TACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGA</genome_strand>
        <mrna_strand>TTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAACGGATTCTTTGAAGTGTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTGTACTGTAGTCCATGAACGTGGAAGCCCCGAGTCTATCATGGACATTCGGGGNTTTGCTGTCAAGTTCTACACCACAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAACGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E293636" ref_strand="+" ref_description="SGN-E293636 [cLET-15-N24]">
      <seq>tttatagatcaaaaggctctgtcttcaattcttctttcatttccatgaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctggtctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctggtatttgccgattctctactgctgtccatgaacgtggaagccccgagtctatcagggacattcatggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgagttctttaatcgtgatgctgagtcgttccctgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17077" stop="14545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16777" g_stop="16713" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="162" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="440" r_length="278" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14845" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="510" r_length="70" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E293636" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E293636" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16777" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACA</genome_strand>
        <mrna_strand>TTTATAGATCAAAAGGCTCTGTCTTCAATTCTTCTTTCATTTCCATGACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGGTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGGTATTTGCCGATTCTCTACTGCTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCATGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGAGTTCTTTAATCGTGATGCTGAGTCGTTCCCTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E245707" ref_strand="+" ref_description="SGN-E245707 [cLEF-48-C20]">
      <seq>ttatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17076" stop="14545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16776" g_stop="16713" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="161" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="439" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14845" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="509" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E245707" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245707" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16776" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACA</genome_strand>
        <mrna_strand>TTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E246152" ref_strand="+" ref_description="SGN-E246152 [cLEF-40-D9]">
      <seq>gatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17071" stop="14545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16771" g_stop="16713" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="156" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="434" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14845" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="504" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E246152" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>504</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246152" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16771" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACA</genome_strand>
        <mrna_strand>GATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E338671" ref_strand="+" ref_description="SGN-E338671 [cTOE-15-F18]">
      <seq>aaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17067" stop="14545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16767" g_stop="16713" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="55" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="152" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="430" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14845" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="500" r_length="70" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E338671" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16767" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACA</genome_strand>
        <mrna_strand>AAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E334891" ref_strand="+" ref_description="SGN-E334891 [cTOE-3-F8]">
      <seq>atcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtcgttccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17070" stop="14548"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16770" g_stop="16713" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="58" r_length="58" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="155" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="433" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14848" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="500" r_length="67" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E334891" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16770" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTG</genome_strand>
        <mrna_strand>ATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E205036" ref_strand="+" ref_description="SGN-E205036 [cLEC-16-N1]">
      <seq>ataaatcaaaaggctctctcttcaattcttctttcattgacatcaccatggatccctatggatatatcccatcacgcgcatactacaccccattgcttgacaacaaatgctgatggggctgtgtacaacactgtatatttcttgactgttgaacctagagggccagctctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17074" stop="14556"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16774" g_stop="16713" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.887"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="0.88"/>
            <acceptor a_prob="0.993" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="160" r_length="98" r_score="0.845"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="0.84"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="438" r_length="278" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14856" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="497" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E205036" ref_strand="+">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205036" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16774" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCC-TTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTC</genome_strand>
        <mrna_strand>ATAAATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTGACATCACCATGGATCCCTATGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATCCCATCACGCGCATACTACACCCCATTGCTTGACAACAAATGCTGATGGGGCTGTGTACAACACTGTATATTTCTTGACTGTTGAACCTAGAG..............................................................................................................GGCCAGCTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E333589" ref_strand="+" ref_description="SGN-E333589 [cTOD-22-M2]">
      <seq>tttatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgatgctaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17077" stop="14559"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16777" g_stop="16713" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="162" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="440" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14859" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="496" r_length="56" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E333589" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333589" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16777" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14859"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAA</genome_strand>
        <mrna_strand>TTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E248171" ref_strand="+" ref_description="SGN-E248171 [cLEF-55-C20]">
      <seq>tcaaaaagctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaaaggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcaaggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17069" stop="14564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16769" g_stop="16713" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="154" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="432" r_length="278" r_score="0.993"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14864" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="433" r_stop="483" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E248171" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>483</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E248171" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16769" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGAT</genome_strand>
        <mrna_strand>TCAAAAAGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAAGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAAGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E336224" ref_strand="+" ref_description="SGN-E336224 [cTOE-10-J7]">
      <seq>ccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgtgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15790" stop="14564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15490" g_stop="15400" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="369" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14914" g_stop="14864" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="420" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E336224" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>420</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15490" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14864"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGAT</genome_strand>
        <mrna_strand>CCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E205626" ref_strand="+" ref_description="SGN-E205626 [cLEC-21-N1]">
      <seq>tgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcaaggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttctttaatcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15540" stop="14567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15240" g_stop="15012" g_length="229"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="229" r_length="229" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14867" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="277" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E205626" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>277</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15240" e_stop="15012"/>
          <exon e_start="14914" e_stop="14867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGT</genome_strand>
        <mrna_strand>TGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAAGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E316001" ref_strand="+" ref_description="SGN-E316001 [cTOA-23-M11]">
      <seq>tagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgtgtatttgtcgattctctactgctgtccatgaacgtggaagccccgagtctatcaaggacattcgtgggtttgctgtcaagatctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttcttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17073" stop="14572"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16773" g_stop="16713" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="158" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="437" r_length="279" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14872" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="480" r_length="43" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E316001" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E316001" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16773" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14872"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGT-TATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTA</genome_strand>
        <mrna_strand>TAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTGTATTTGTCGATTCTCTACTGCTGTCCATGAACGTGGAAGCCCCGAGTCTATCAAGGACATTCGTGGGTTTGCTGTCAAGATCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E246645" ref_strand="+" ref_description="SGN-E246645 [cLEF-45-E17]">
      <seq>gcaggaattcggcacgagtatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtccccgtgttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17081" stop="14573"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16775" g_stop="16713" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="81" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="178" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="456" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14873" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="457" r_stop="498" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E246645" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16775" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTT</genome_strand>
        <mrna_strand>TATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E205485" ref_strand="+" ref_description="SGN-E205485 [cLEC-28-B23]">
      <seq>atagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactgtgatcttgttggaaacaatgtccccgtgttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17074" stop="14574"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16774" g_stop="16713" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="159" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="437" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14874" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="478" r_length="41" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E205485" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E205485" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16774" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14874"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTT</genome_strand>
        <mrna_strand>ATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTGTGATCTTGTTGGAAACAATGTCCCCGTGTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E253451" ref_strand="+" ref_description="SGN-E253451 [cLEG-24-F24]">
      <seq>gctaagggtttctttgaagttactcgtgacattgctcatgttacttgcgctgatatcctacgagctcctggcgctcaaacgcctgatatttgtcgattctctactgttgtccatgaacgtggcagccccgattctatcagggacattcgtggttatgctgacaagctctacaccagagagggtaactttgatcttggaggaaacaatgtccccgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15491" stop="14578"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15191" g_stop="15012" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.922"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="14914" g_stop="14878" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="217" r_length="37" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E253451" ref_strand="+">
        <total_alignment_score>0.922</total_alignment_score>
        <cumulative_length_of_scored_exons>217</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15191" e_stop="15012"/>
          <exon e_start="14914" e_stop="14878"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGT</genome_strand>
        <mrna_strand>GCTAAGGGTTTCTTTGAAGTTACTCGTGACATTGCTCATGTTACTTGCGCTGATATCCTACGAGCTCCTGGCGCTCAAACGCCTGATATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGCAGCCCCGATTCTATCAGGGACATTCGTGGTTATGCTGACAAGCTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGGAGGAAACAATGTCCCCGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E202062" ref_strand="+" ref_description="SGN-E202062 [cLEC-7-H14]">
      <seq>ttatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatcttgttggaaacaatgtcccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17076" stop="14582"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16776" g_stop="16713" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="161" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="439" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14882" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="472" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E202062" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16776" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14882"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCC</genome_strand>
        <mrna_strand>TTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E720702" ref_strand="+" ref_description="SGN-E720702 [FC11CD04]">
      <seq>ttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctaaaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctaccccatagagggtaactttgatcttgttggaaacaatgtccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15766" stop="14583"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15466" g_stop="15400" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="345" r_length="278" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="14914" g_stop="14883" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="377" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E720702" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>377</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E720702" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15466" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14883"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCC</genome_strand>
        <mrna_strand>TTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAAAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACCCCATAGAG.................................................................................................GGTAACTTTGATCTTGTTGGAAACAATGTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E247398" ref_strand="+" ref_description="SGN-E247398 [cLEF-46-J13]">
      <seq>caaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcaaggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17068" stop="14699"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16768" g_stop="16713" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="153" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="431" r_length="278" r_score="0.996"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14900" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="446" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E247398" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247398" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16768" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14900"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTT</genome_strand>
        <mrna_strand>CAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAAGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E204425" ref_strand="+" ref_description="SGN-E204425 [cLEC-13-F16]">
      <seq>atagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagagagggtaactttgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17074" stop="14705"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16774" g_stop="16713" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="159" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15012" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="437" r_length="278" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="14914" g_stop="14902" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="438" r_stop="450" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E204425" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>450</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204425" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16774" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15012"/>
          <exon e_start="14914" e_stop="14902"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATC</genome_strand>
        <mrna_strand>ATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG.................................................................................................GGTAACTTTGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E206645" ref_strand="+" ref_description="SGN-E206645 [cLEC-31-P23]">
      <seq>atagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacaccagag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17074" stop="14714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16774" g_stop="16713" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="159" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15014" g_length="276"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="435" r_length="276" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E206645" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16774" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15014"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAG</genome_strand>
        <mrna_strand>ATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E329315" ref_strand="+" ref_description="SGN-E329315 [cTOD-2-O22]">
      <seq>aactgtttatagatcaaaaggctctctcttcaattctgctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttattggtcgattctctactgttgtccatgaacgtggaagccccgagtctatcaaggacattcgtgggtttgctgtcaagttctacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17082" stop="14718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16782" g_stop="16713" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="167" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15018" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="439" r_length="272" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E329315" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>439</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E329315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16782" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACC</genome_strand>
        <mrna_strand>AACTGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTGCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTGGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAAGGACATTCGTGGGTTTGCTGTCAAGTTCTACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E245913" ref_strand="+" ref_description="SGN-E245913 [cLEF-51-A21]">
      <seq>ttatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17076" stop="14718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16776" g_stop="16713" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="161" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15018" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="433" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E245913" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245913" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16776" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACC</genome_strand>
        <mrna_strand>TTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E336825" ref_strand="+" ref_description="SGN-E336825 [cTOE-5-B20]">
      <seq>tagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17073" stop="14718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16773" g_stop="16713" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="158" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15018" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="430" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E336825" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>430</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E336825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16773" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACC</genome_strand>
        <mrna_strand>TAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E335718" ref_strand="+" ref_description="SGN-E335718 [cTOE-8-B3]">
      <seq>tcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctacacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17069" stop="14718"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16769" g_stop="16713" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="154" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15018" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="426" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E335718" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16769" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15018"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACC</genome_strand>
        <mrna_strand>TCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E334903" ref_strand="+" ref_description="SGN-E334903 [cTOE-3-J8]">
      <seq>tcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaaaccccgagtctatcaaggacattcgtggttttgctgtcaagttctacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17069" stop="14719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16769" g_stop="16713" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="154" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15019" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="425" r_length="271" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E334903" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>425</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334903" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16769" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACAC</genome_strand>
        <mrna_strand>TCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAACCCCGAGTCTATCAAGGACATTCGTGGTTTTGCTGTCAAGTTCTACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E203535" ref_strand="+" ref_description="SGN-E203535 [cLEC-15-B23]">
      <seq>atagatcaaaaggctctctcttgaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgtggttttgctgtcaagttctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17074" stop="14720"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16774" g_stop="16713" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="159" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15020" g_length="270"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="429" r_length="270" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E203535" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203535" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16774" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15020"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACA</genome_strand>
        <mrna_strand>ATAGATCAAAAGGCTCTCTCTTGAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E213113" ref_strand="+" ref_description="SGN-E213113 [cLEC-72-C21]">
      <seq>ttatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctaaaagtgctaatgctaaaggattctttgaagttactcatgacatttctcatcttacttgtgctgaatttctccgaactcctggcgctcaaacgcctggtatttggccaatctctactggtggccatgaacgtggaaacccccaatctatcaaggacattcctgggtttgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17076" stop="14733"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16776" g_stop="16713" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="161" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15033" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="418" r_length="257" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E213113" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16776" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15033"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCT</genome_strand>
        <mrna_strand>TTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAAAAGTGCTAATGCTAAAGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGAATTTCTCCGAACTCCTGGCGCTCAAACGCCTGGTATTTGGCCAATCTCTACTGGTGGCCATGAACGTGGAAACCCCCAATCTATCAAGGACATTCCTGGGTTTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E200251" ref_strand="+" ref_description="SGN-E200251 [cLEC-12-E23]">
      <seq>atagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcanggacattcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17074" stop="14742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16774" g_stop="16713" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="159" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15042" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="407" r_length="248" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E200251" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200251" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16774" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGT</genome_strand>
        <mrna_strand>ATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCANGGACATTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E337473" ref_strand="+" ref_description="SGN-E337473 [cTOE-11-D17]">
      <seq>tttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17043" stop="14742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16743" g_stop="16713" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="128" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15042" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="376" r_length="248" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E337473" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>376</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337473" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16743" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGT</genome_strand>
        <mrna_strand>TTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E206769" ref_strand="+" ref_description="SGN-E206769 [cLEC-31-D2]">
      <seq>atagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactggtgtccatgaacgtggaagccccgagtctatcagggacattcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17074" stop="14743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16774" g_stop="16713" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="159" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15043" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="406" r_length="247" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E206769" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>406</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16774" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCG</genome_strand>
        <mrna_strand>ATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGGTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E200335" ref_strand="+" ref_description="SGN-E200335 [cLEC-1-I13]">
      <seq>tagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcaagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17073" stop="14743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16773" g_stop="16713" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="158" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15043" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="405" r_length="247" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E200335" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200335" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16773" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCG</genome_strand>
        <mrna_strand>TAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCAAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E338190" ref_strand="+" ref_description="SGN-E338190 [cTOE-13-H4]">
      <seq>tagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17073" stop="14743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16773" g_stop="16713" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="158" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15043" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="405" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E338190" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E338190" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16773" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15043"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCG</genome_strand>
        <mrna_strand>TAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E202024" ref_strand="+" ref_description="SGN-E202024 [cLEC-7-H23]">
      <seq>atagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17074" stop="14744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16774" g_stop="16713" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="159" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15044" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="405" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E202024" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E202024" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16774" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTC</genome_strand>
        <mrna_strand>ATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E337949" ref_strand="+" ref_description="SGN-E337949 [cTOE-14-A23]">
      <seq>ggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15798" stop="14744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="110" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15289" g_stop="15044" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="111" r_stop="356" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E337949" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337949" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15044"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTC</genome_strand>
        <mrna_strand>TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E216981" ref_strand="+" ref_description="SGN-E216981 [cLEL-1-O21]">
      <seq>tttttcgagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatcagggacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17079" stop="14746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16779" g_stop="16713" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="164" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15046" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="408" r_length="244" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E216981" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216981" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16779" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15046"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACAT</genome_strand>
        <mrna_strand>TTTTTCGAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E212836" ref_strand="+" ref_description="SGN-E212836 [cLEC-73-G6]">
      <seq>tcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgagtctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17069" stop="14754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16769" g_stop="16713" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="154" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15054" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="390" r_length="236" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E212836" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16769" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATC</genome_strand>
        <mrna_strand>TCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E334971" ref_strand="+" ref_description="SGN-E334971 [cTOE-9-L5]">
      <seq>atggatcccctctaagtatcgccccatcaagcgcatacgacaccccctttctttgacaaccaaatgctggtggtcctgtgtaccaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgntgtccatgaacgtggaagccccgagtctatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15798" stop="14754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="17" r_stop="118" r_length="102" r_score="0.897"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15289" g_stop="15054" g_length="236"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="354" r_length="236" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E334971" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>333</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334971" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCG-CCCATCAAGCGCATACGACA-CCCCTTTC-TTGACAA-CAAATGCTGGTGGTCCTGTGTA-CAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATC</genome_strand>
        <mrna_strand>TATCGCCCCATCAAGCGCATACGACACCCCCTTTCTTTGACAACCAAATGCTGGTGGTCCTGTGTACCAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGNTGTCCATGAACGTGGAAGCCCCGAGTCTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E210422" ref_strand="+" ref_description="SGN-E210422 [cLEC-35-E15]">
      <seq>atagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgcctgatttcttcgagctcctggcgctcaaacgcctgttatttgacgattctctactgtggtccatgaacgtggaagccccgagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17074" stop="14758"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16774" g_stop="16713" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="159" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15058" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="391" r_length="232" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E210422" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E210422" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16774" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15058"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTG-CTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTC</genome_strand>
        <mrna_strand>ATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCCTGA-TTTCTTCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGACGATTCTCTACTGTGGTCCATGAACGTGGAAGCCCCGAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E204463" ref_strand="+" ref_description="SGN-E204463 [cLEC-24-E5]">
      <seq>ttatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatgaacgtggaagccccgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17076" stop="14760"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16776" g_stop="16713" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="161" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15060" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="391" r_length="230" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E204463" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>391</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16776" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15060"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAG</genome_strand>
        <mrna_strand>TTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E200812" ref_strand="+" ref_description="SGN-E200812 [cLEC-9-L11]">
      <seq>tagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttatttgtcgattctctactgttgtccatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17073" stop="14777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16773" g_stop="16713" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="158" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15077" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="371" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E200812" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>371</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E200812" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16773" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15077"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATG</genome_strand>
        <mrna_strand>TAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E324167" ref_strand="+" ref_description="SGN-E324167 [cTOC-4-K10]">
      <seq>aactgtttatagattaaaaggctgtctcttcaattcttctgggatttccatcaccaaggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatagctggtggtcctgtgtacaacaatgggttcttccttgactggtggacctagaaggcctgttctgcttgaggattactatctaattgagaagctcacgacatttgatcgcgagaagatacctgaacgtgttgttcatgctaaaggtgctagtgctaaggaattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcctgttattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17082" stop="14801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16782" g_stop="16713" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.993" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="169" r_length="99" r_score="0.928"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="0.90"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15101" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="170" r_stop="358" r_length="189" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E324167" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>356</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324167" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16782" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAAT-GCTGGTGGTCCTGTGTACAACAAT-GTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTT</genome_strand>
        <mrna_strand>AACTGTTTATAGATTAAAAGGCTGTCTCTTCAATTCTTCTGGGATTTCCATCACCAAGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATAGCTGGTGGTCCTGTGTACAACAATGGGTTCTTCCTTGACTGGTGGACCTAGAA..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCACGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAAAGGTGCTAGTGCTAAGGAATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E245940" ref_strand="+" ref_description="SGN-E245940 [cLEF-51-M5]">
      <seq>ttatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgattttctccgagctcctggcgctcaaacgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17076" stop="14808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16776" g_stop="16713" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="161" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15108" g_length="182"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="343" r_length="182" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E245940" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>343</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E245940" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16776" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCT</genome_strand>
        <mrna_strand>TTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E310798" ref_strand="+" ref_description="SGN-E310798 [cLEZ-15-E23]">
      <seq>ggctctctcttcaaatcttctttcatttccatcaccatggatccctctaagcatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaaactcgcgacattagatcgcgagaagatacctgaacgtgtagttcatgctacaggagctactgctaagggattctttgaagatactaatgacatgtctcatctaacttgtgctgattttctccgagctcctggcgctcaaacccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17063" stop="14809"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16763" g_stop="16713" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="148" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15109" g_length="181"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="329" r_length="181" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E310798" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>329</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E310798" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16763" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCC</genome_strand>
        <mrna_strand>GGCTCTCTCTTCAAATCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAACTCGCGACATTAGATCGCGAGAAGATACCTGAACGTGTAGTTCATGCTACAGGAGCTACTGCTAAGGGATTCTTTGAAGATACTAATGACATGTCTCATCTAACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E337945" ref_strand="+" ref_description="SGN-E337945 [cTOE-14-A3]">
      <seq>cccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggtgctagtgctaagggattctttgaagttactcatgacatttctcatcttacttgtgctgatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="15791" stop="14835"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15491" g_stop="15400" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15289" g_stop="15135" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="247" r_length="155" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E337945" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>247</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337945" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15491" e_stop="15400"/>
          <exon e_start="15289" e_stop="15135"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTT</genome_strand>
        <mrna_strand>CCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E206644" ref_strand="+" ref_description="SGN-E206644 [cLEC-31-P9]">
      <seq>caaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaaagtttcttccttgactgttggacctatagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctagaggggctagtgctaagggattctttgaagatactcatgacatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17068" stop="14857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16768" g_stop="16713" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="56" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="57" r_stop="153" r_length="97" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15157" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="154" r_stop="286" r_length="133" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E206644" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>286</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E206644" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16768" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTC</genome_strand>
        <mrna_strand>CAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAAAGTTTCTTCCTTGACTGTTGGACCTATAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGGGCTAGTGCTAAGGGATTCTTTGAAGATACTCATGACATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E335309" ref_strand="+" ref_description="SGN-E335309 [cTOE-1-D2]">
      <seq>tctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtaccaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttgttcatgctangagtgctagtgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17058" stop="14890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16758" g_stop="16713" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="144" r_length="98" r_score="0.979"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="0.96"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15190" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="244" r_length="100" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E335309" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>243</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E335309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16758" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15190"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTA-CAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGC</genome_strand>
        <mrna_strand>TCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACCAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTANGAGTGCTAGTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E333541" ref_strand="+" ref_description="SGN-E333541 [cTOD-22-I15]">
      <seq>tttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgaaagctcgcgactttgatcgcgagagatacctgaacgtgttgttcatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17043" stop="14904"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16743" g_stop="16713" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="128" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15204" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="211" r_length="83" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E333541" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>214</cumulative_length_of_scored_exons>
        <coverage percentage="1.014" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E333541" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16743" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15204"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCT</genome_strand>
        <mrna_strand>TTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGA-AAGCTCGCGAC-TTTGATCGCGAG-AGATACCTGAACGTGTTGTTCATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E289111" ref_strand="+" ref_description="SGN-E289111 [cLES-18-M8]">
      <seq>tatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgttggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17075" stop="14912"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16775" g_stop="16713" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="160" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15212" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="238" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E289111" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16775" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15212"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTG</genome_strand>
        <mrna_strand>TATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E203689" ref_strand="+" ref_description="SGN-E203689 [cLEC-15-N1]">
      <seq>ttatagatcaaaaggctctctcttcaattcttctttcatttccatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgatggacctagagggcctgttctgcttgaggattactatctaattgagaagctcgcgacatttgatcgcgagaagatacctgaacgtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17076" stop="14913"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16776" g_stop="16713" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="161" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15213" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="238" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E203689" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>238</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16776" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15213"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTT</genome_strand>
        <mrna_strand>TTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGATGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E265596" ref_strand="+" ref_description="SGN-E265596 [cLEI-14-A12]">
      <seq>tatagatcaaaaggctctatcttcaattcttctttcatgtacatcaccatggatccctctaagtatcgcccatcaagcgcatacgacacccctttcttgacaacaaatgctggtggtcctgtgtacaacaatgtttcttccttgactgctggacctagagggcctgttctgcttgacgattactatctaattgagaatctatccacatttgatcgcgagaaaatacctgaacgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="17075" stop="14916"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="16775" g_stop="16713" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15496" g_stop="15400" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="160" r_length="97" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110">
            <donor d_prob="0.979" d_score="0.98"/>
            <acceptor a_prob="0.973" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="15289" g_stop="15216" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="234" r_length="74" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E265596" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>234</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265596" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="16775" e_stop="16713"/>
          <exon e_start="15496" e_stop="15400"/>
          <exon e_start="15289" e_stop="15216"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAGGTATATCAATAAATTTTTTTTTGTATACAAAACTTTGTGATCCTATTTTTTTCTTAGTTGATCTTGTGTTATATAATTGGTATAATATTATAATATAAGTATATCGATCTCGTATAATACGTAAAAATACATTGTTATCGGAAGAAAAAATTCTCACTCAAAGTTTGAATTCATTTCTTTTTTTGATCACAGATAAAGAGATCTTATTCGTTACATCAAAGTATCGTCGATATAGTTATAATTTCTTTTTAAAGAACAAAACACCTTATTAAGGTGTCTTTTGTCTTTATTGATACATTTAAAATGGTTTCTCATGCATATCAAGTTTCACGTAAAGAAAAATGAAGCACTAGTCATATGAAATTGTGTTTGAATATAAATTTCATGTTTAATATTATGTAATTTTTTAAAAGAATAAAAAAAAATTCATGCATATTTAACAAAAAATTCAAATGAAAAAAAAAAAAACACCCCTCAAATTCCTTTTAAACTAACTTAGGAAAATTCAAAAAAAGCTTTTCATAAAAAAAACAAAACTAACATATCTAAAATATTATAATTTCTCAACAAAAATTGTCACGTGTGTTCTAACGCCTTTCTGAAAATAAAAATAATTTTTTTTTCAAAAAAAAACTAAACTTAAATAACTGTCCTGTAGATGCCGGAATATTCACCGACATCTGATCTGCGATCATCGCCGGCGATAATCACCGGCGATCGGAACATTTGAAGAAAAACACAAATTGTGAGCAATCCTTGCGTAATTGTTTATTACCAGGCGAATCTAGCTTTAAAGCTTTAAGTTCACGTACTCTCAGTAGCTTTTAACTAAATAACATATTTATATTAACAAATCCACTAAATATTTTTTTTAAAACCGTGAACTTAGTTATTATTGTATATTAACTTGACATCATCATAGGAACCTATAAACTTCAGATCCGTTTGAATATCAAGTTGTGAACACTCATTTTATTACATTTGGTTGTGTATTAGGAGGTGGATCTAGCCTTAAAGCTATGAGTTCACGTGATCTCAGTAGTTTTTGCTCAAATCTCATTGTATTTGTATATTTAACTATGAGTTCAGTTATTATTGTATATATGTATATATATTAGCTTGAGATCGTTGTAAGAACTCGTAAACTTCAGATTTCTCGATTTGTGTGGCATATGCAATGTATATCTTATTTTTGTTGGATATGATTGTGACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAGGTATTTTGATGTTAGACGTTGAGCTTGTTTGAATTGACTTATTTTAAGTGTTTTTAAGTCTGGATGGTATAAGATTTCGTACATTAGTTCAAAGTTCATATTTTTGGCAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGT</genome_strand>
        <mrna_strand>TATAGATCAAAAGGCTCTATCTTCAATTCTTCTTTCATGTACATCACCATGGATCCCTCTAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGCTGGACCTAGAG..............................................................................................................GGCCTGTTCTGCTTGACGATTACTATCTAATTGAGAATCTATCCACATTTGATCGCGAGAAAATACCTGAACGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E252859" ref_strand="+" ref_description="SGN-E252859 [cLEG-16-M18]">
      <seq>agagttctctttagcaccaacatttccattctgcaatatctcaattatagctaaaataggttcttctttcgatataagatttttgtttgtttcatcaatcgataagttcaaaagagccgtcacagcatgttcctgaattctagaatctggatacgatagtagatgcacgagtggtgggattcctccgcgattcactattaatgtcctattctcaggattttctttcgaaagcatcctgatctctttcacagcctttctctgcacttctaaatgactagacgataaatcttgaatcaacgacaaaactcgttcatcactttcatccgaggggctctcgggttttggagattcttgctttcgaggaagctgaaaattgttcttttcacaccattgttggatcaaattcttcagagcaaagtttggggctaatgacaagtgctccaaaatttcccccgttttcggacatgtttggcaaccggaatccaacaaatgttgaatgttctctctttcatatgtctacaaatagatgcaaagtggaaaggaaaatcagtcatacaaagcatatcgaacgagtgaatgatcaaaaaccaccacaagtattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="34014" stop="35215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34314" g_stop="34915" g_length="602"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="602" r_length="602" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E252859" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34314" e_stop="34915"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGTTCTCTTTAGCACCAACATTTCCATTCTGCAATATCTCAATTATAGCTAAAATAGGTTCTTCTTTCGATATAAGATTTTTGTTTGTTTCATCAATCGATAAGTTCAAAAGAGCCGTCACAGCATGTTCCTGAATTCTAGAATCTGGATACGATAGTAGATGCACGAGTGGTGGGATTCCTCCGCGATTCACTATTAATGTCCTATTCTCAGGATTTTCTTTCGAAAGCATCCTGATCTCTTTCACAGCCTTTCTCTGCACTTCTAAATGACTAGACGATAAATCTTGAATCAACGACAAAACTCGTTCATCACTTTCATCCGAGGGGCTCTCGGGTTTTGGAGATTCTTGCTTTCGAGGAAGCTGAAAATTGTTCTTTTCACACCATTGTTGGATCAAATTCTTCAGAGCAAAGTTTGGGGCTAATGACAAGTGCTCCAAAATTTCCCCCGTTTTCGGACATGTTTGGCAACCGGAATCCAACAAATGTTGAATGTTCTCTCTTTCATATGTCTACAAATAGATGCAAAGTGGAAAGGAAAATCAGTCATACAAAGCAAATCGAACGAGTGAATGATCAAAAACCACCACAAGTATTC</genome_strand>
        <mrna_strand>AGAGTTCTCTTTAGCACCAACATTTCCATTCTGCAATATCTCAATTATAGCTAAAATAGGTTCTTCTTTCGATATAAGATTTTTGTTTGTTTCATCAATCGATAAGTTCAAAAGAGCCGTCACAGCATGTTCCTGAATTCTAGAATCTGGATACGATAGTAGATGCACGAGTGGTGGGATTCCTCCGCGATTCACTATTAATGTCCTATTCTCAGGATTTTCTTTCGAAAGCATCCTGATCTCTTTCACAGCCTTTCTCTGCACTTCTAAATGACTAGACGATAAATCTTGAATCAACGACAAAACTCGTTCATCACTTTCATCCGAGGGGCTCTCGGGTTTTGGAGATTCTTGCTTTCGAGGAAGCTGAAAATTGTTCTTTTCACACCATTGTTGGATCAAATTCTTCAGAGCAAAGTTTGGGGCTAATGACAAGTGCTCCAAAATTTCCCCCGTTTTCGGACATGTTTGGCAACCGGAATCCAACAAATGTTGAATGTTCTCTCTTTCATATGTCTACAAATAGATGCAAAGTGGAAAGGAAAATCAGTCATACAAAGCATATCGAACGAGTGAATGATCAAAAACCACCACAAGTATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E710597" ref_strand="+" ref_description="SGN-E710597 [FA55DF10]">
      <seq>ctctttatggggcctaaaaccccaaaatcttctctaacaaatctgtatttccaataatacccctaaaccctgtcctccgcgacaccaccggaggagtcgtcaaaaatcagcaaacacgcttccgaccaccaatcatcgccgccgtatggctattccacggcggcgccaccagcatcatcacagccgtgtgcggtttctgttcccggcaatttttgctgtttccgccattatcctcttcttattcctcttcctatcaatcctcgctccgtctcctaatgatgataatcacctccgccatctccgtcgtgatgattcatcggaagggaaaagccgtagtaatgagaatagagtgagtttatctcgtgttaagatcaatgcacaagttcctaatcgtgatctctggagttcgaaaaattcaaagtttttctatggatgcagtaatgccagcagtaaatttgcaaaagccaaaacgatcacacatccgaatcgatacttgttaattgtcacaagtggaggtcttaaccaacaaagaactgggataactgatgctgttgttgctgctcgcattttaaatgccactcttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="45047" stop="47802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45346" g_stop="45664" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="319" r_length="319" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45665" i_stop="45793" i_length="129">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45794" g_stop="45844" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="370" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45845" i_stop="45942" i_length="98">
            <donor d_prob="0.871" d_score="1.00"/>
            <acceptor a_prob="0.463" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45943" g_stop="46033" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="461" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46034" i_stop="46210" i_length="177">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46211" g_stop="46287" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="462" r_stop="538" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46288" i_stop="47454" i_length="1167">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47455" g_stop="47502" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="539" r_stop="586" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E710597" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E710597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45346" e_stop="45664"/>
          <exon e_start="45794" e_stop="45844"/>
          <exon e_start="45943" e_stop="46033"/>
          <exon e_start="46211" e_stop="46287"/>
          <exon e_start="47455" e_stop="47502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCGTTATGGGGCCTAAAACCCCAAAATCTTCTCTAACAAATCTGTATTTCCAATAATACCCCTAAACCCTGTCCTCCGCGACACCACCGGAGGAGTCGTCAAAAATCAGCAAACACGCTTCCGACCACCAATCATCGCCGCCGTATGGCTATTCCACGGCGGCGCCACCAGCATCATCACAGCCGTGTGCGGTTTCTGTTCCCGGCAATTTTTGCTGTTTCCGCCATTATCCTCTTCTTATTCCTCTTCCTATCAATCCTCGCTCCGTCTCCTAATGATGATAATCACCTCCGCCATCTCCGTCGTGATGATTCATCGGTACATTAAATTAATCAATCACGCTGACGAAAAAAATGCTAAAATGTTTAATTTAATTGTGAAGTATTAATTAATTGATTAATATATGATAAAGTGTTAATTTGATTATATAATTTGTGACTTGTGTAGGAAGGGAAAAGCCGTAGTAATGAGAATAGAGTGAGTTTATCTCGTGTTAAGGTTGGGATTTAATCTGAATCTTATTGATTTCATTTGTGATTTGATTTGGTTTGGATCTAAGGTTGCTAAATGTGGTGTGGTTGATTGTTGAGTTCTAGATCAATGCAGAAGTTCATAATCGTGATCTCTGGAGTTCGAAAAATTCAAAGTTTTTCTATGGATGCAGTAATGCCAGCAGTAAATTTGCAAGTGCGTAAACTCGAAAATGAGCTCAATAGCTCAGCTTCTTTTATAGCATTTGTATTTGAAAAAAATAGAAGTAATCAGTTTTTTTTAGTATGTTTATGCAGCAGTAGTGGAGTTATTAATCAGGTTGAATTTGATCATTGAAATCTGATTGCGTATTTGTACTGTTTCAAATTGCAGAAGCCAAAACGATCACACATCCGAATCGATACTTGTTAATTGTCACAAGTGGAGGTCTTAACCAACAAAGAACTGGGGTAAGAAAATATTACCAGCTTGGTTTTTTAGAATTGAATATGGATTCTGTTTTAATTTGTTGACTAACTAGAAATGAGATTCTGGTCGAGAAACTGTTTTTTTCCAACACTTAAAGACAAATAAGGTAGTTGATTCAGTGATTGTTGTATTTTATAGGGTAGTTCAGATGACCTTGTCTTTTCTATTTTTAGATAGTTAATGCACAAGCAAGCCCGAATAAAGGTATCAGGTTGCTTTAGGTTCACAATTGTTAAAGCTAGTCTATTTATGAGGAATATCATCATTAAAATGTCTTGGGATGTGCTTTTCTAGATACGGCTACATCGGAACATGGATTGAAAAATCGGCACCCTTAATGTTCTAAAAGACAAATTACTGTGTATTGTAATAAAGAGGTCCAAATGAAGCTGGATGGATATAAAAGACTGTTTTAGCTAACTCAACTAGTTTGGTATTGAGACAGTTGTCGGTATTTTTGTAAGCACATGCACTGACAATCAAGGCATTAGATTTCACAGTGAACAACGCCACAATGCCCATTAATTAGGAGGTTCTCTATACCAGTAAGTGGAGAAGCTTTATGCAACTGGTTGGATATAACATCTTATGGTTGTTCAAGTGCTGCAGAATTTTATGTTCAGTTTGTGACTTTCTGTCATATCAATGTTGTTGATTTTTATTTTTGACTATTGCAAGATATTCTTGATATGTAAATGAGTGCAACTAATTTTGGACTGAGTTATAGTTGTTGATTGATCATTGATTCATTAGAACCTCAAGATGCACCTAATTTGATTGGACAGAGAAGTAATGATTATAAATCCCCAGTACAAAATCATATCTGGTGATAGCCAATCTGTCTGCATAATCATGCTCTGGGATTTGATGATTGCGCTATACTTATTTGCACTTTTAAGTAAATTGGCTACAGAAGATACACTTAAAAATTACCAGCCCATGCTAACTATAGGTTGTCAAATACTCCTCTATACGTAACATGATTCTGATAATTCCATCTATTTTTTTCTAATGTATGGCCCTTTGAGTTGGCACTCCTTTCTGTTACCACCCGTGTACTTTAGCTTTCTGCTGGAACCAAAATATAAGACTGTGAAGCGTGGAACCTTCTATAGTTAACGGTGTAAGCTGGTCCATCTTTATGGCAGATAACTGATGCTGTTGTTGCTGCTCGCATTTTAAATGCCACTCTTGTT</genome_strand>
        <mrna_strand>CTCTTTATGGGGCCTAAAACCCCAAAATCTTCTCTAACAAATCTGTATTTCCAATAATACCCCTAAACCCTGTCCTCCGCGACACCACCGGAGGAGTCGTCAAAAATCAGCAAACACGCTTCCGACCACCAATCATCGCCGCCGTATGGCTATTCCACGGCGGCGCCACCAGCATCATCACAGCCGTGTGCGGTTTCTGTTCCCGGCAATTTTTGCTGTTTCCGCCATTATCCTCTTCTTATTCCTCTTCCTATCAATCCTCGCTCCGTCTCCTAATGATGATAATCACCTCCGCCATCTCCGTCGTGATGATTCATCG.................................................................................................................................GAAGGGAAAAGCCGTAGTAATGAGAATAGAGTGAGTTTATCTCGTGTTAAG..................................................................................................ATCAATGCACAAGTTCCTAATCGTGATCTCTGGAGTTCGAAAAATTCAAAGTTTTTCTATGGATGCAGTAATGCCAGCAGTAAATTTGCAA.................................................................................................................................................................................AAGCCAAAACGATCACACATCCGAATCGATACTTGTTAATTGTCACAAGTGGAGGTCTTAACCAACAAAGAACTGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACTGATGCTGTTGTTGCTGCTCGCATTTTAAATGCCACTCTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E332664" ref_strand="+" ref_description="SGN-E332664 [cTOD-18-J6]">
      <seq>ctaaaaccccaaaatcttctctaacaaatctgtatttccaataatacccctaaaccctgtcctccgcgacaccaccggaggagtcgtcaaaaatcagcaaacacgcttccgaccaccaatcatcgccgccgtatggctattccacggcggcgccaccagcatcatcacagccgtgtgcggtttctgttcccggcaatttttgctgtttccgccattatcctcttcttattcctcttcctatcaatcctcgctccgtctcctaatgatgataatcacctccgccatctccgtcgtgatgattcatcggaagggaaaagccgtagtaatgagaatagagtgagtttatctcgtgttaagatcaatgcagaagttcataatcgtgatctctggagttcgaaaaattcaaagtttttctatggatgcagtaatgccagcagtaaatttgcaaaagccaaaacgatcacacatccgaatcgatacttgttaattgtcacaagtggaggtcttaaccaacaaagaactgggataactgatgctgnntgtgctgctcgcatttaaatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="45059" stop="46591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45359" g_stop="45664" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45665" i_stop="45793" i_length="129">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45794" g_stop="45844" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="357" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45845" i_stop="45942" i_length="98">
            <donor d_prob="0.871" d_score="1.00"/>
            <acceptor a_prob="0.463" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45943" g_stop="46033" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="448" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46034" i_stop="46210" i_length="177">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46211" g_stop="46287" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="449" r_stop="525" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E332664" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332664" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45359" e_stop="45664"/>
          <exon e_start="45794" e_stop="45844"/>
          <exon e_start="45943" e_stop="46033"/>
          <exon e_start="46211" e_stop="46287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAAAACCCCAAAATCTTCTCTAACAAATCTGTATTTCCAATAATACCCCTAAACCCTGTCCTCCGCGACACCACCGGAGGAGTCGTCAAAAATCAGCAAACACGCTTCCGACCACCAATCATCGCCGCCGTATGGCTATTCCACGGCGGCGCCACCAGCATCATCACAGCCGTGTGCGGTTTCTGTTCCCGGCAATTTTTGCTGTTTCCGCCATTATCCTCTTCTTATTCCTCTTCCTATCAATCCTCGCTCCGTCTCCTAATGATGATAATCACCTCCGCCATCTCCGTCGTGATGATTCATCGGTACATTAAATTAATCAATCACGCTGACGAAAAAAATGCTAAAATGTTTAATTTAATTGTGAAGTATTAATTAATTGATTAATATATGATAAAGTGTTAATTTGATTATATAATTTGTGACTTGTGTAGGAAGGGAAAAGCCGTAGTAATGAGAATAGAGTGAGTTTATCTCGTGTTAAGGTTGGGATTTAATCTGAATCTTATTGATTTCATTTGTGATTTGATTTGGTTTGGATCTAAGGTTGCTAAATGTGGTGTGGTTGATTGTTGAGTTCTAGATCAATGCAGAAGTTCATAATCGTGATCTCTGGAGTTCGAAAAATTCAAAGTTTTTCTATGGATGCAGTAATGCCAGCAGTAAATTTGCAAGTGCGTAAACTCGAAAATGAGCTCAATAGCTCAGCTTCTTTTATAGCATTTGTATTTGAAAAAAATAGAAGTAATCAGTTTTTTTTAGTATGTTTATGCAGCAGTAGTGGAGTTATTAATCAGGTTGAATTTGATCATTGAAATCTGATTGCGTATTTGTACTGTTTCAAATTGCAGAAGCCAAAACGATCACACATCCGAATCGATACTTGTTAATTGTCACAAGTGGAGGTCTTAACCAACAAAGAACTGGG</genome_strand>
        <mrna_strand>CTAAAACCCCAAAATCTTCTCTAACAAATCTGTATTTCCAATAATACCCCTAAACCCTGTCCTCCGCGACACCACCGGAGGAGTCGTCAAAAATCAGCAAACACGCTTCCGACCACCAATCATCGCCGCCGTATGGCTATTCCACGGCGGCGCCACCAGCATCATCACAGCCGTGTGCGGTTTCTGTTCCCGGCAATTTTTGCTGTTTCCGCCATTATCCTCTTCTTATTCCTCTTCCTATCAATCCTCGCTCCGTCTCCTAATGATGATAATCACCTCCGCCATCTCCGTCGTGATGATTCATCG.................................................................................................................................GAAGGGAAAAGCCGTAGTAATGAGAATAGAGTGAGTTTATCTCGTGTTAAG..................................................................................................ATCAATGCAGAAGTTCATAATCGTGATCTCTGGAGTTCGAAAAATTCAAAGTTTTTCTATGGATGCAGTAATGCCAGCAGTAAATTTGCAA.................................................................................................................................................................................AAGCCAAAACGATCACACATCCGAATCGATACTTGTTAATTGTCACAAGTGGAGGTCTTAACCAACAAAGAACTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E701658" ref_strand="+" ref_description="SGN-E701658 [FA16CD04]">
      <seq>aaaccccaaaatcttctctaacaaatctgtatttccaataatacccctaaaccctgtcctccgcgacaccaccggaggagtcgtcaaaaatcagcaaacacgcttccgaccaccaatcatcgccgccgtatggctattccacggcggcgccaccagcatcatcacagccgtgtgcggtttctgttcccggcaatttttgctgtttccgccattatcctcttcttattcctcttcctatcaatcctcgctccgtctcctaatgatgataatcacctccgccatctccgtcgtgatgattcatcggaagggaaaagccgtagtaatgagaatagagtgagtttatctcgtgttaagatcaatgcagaagttcataatcgtgatctctggagttcgaaaaattcaaagtttttctatggatgcagtaatgccagcagtaaatttgcaaaagccaaaacgatcacacatccgaatcgatacttgttaattgtcacaagtggaggtcttaaccaacaaagaactgggataactgatgctgttgttgctgctcgcattttaaatgccactcttgttgttccaaagttggacaagacgtctttctggaaagattctagtgacttctctgatatatttgatgttgattggtttataaaacatctaacaacagatgttacaattataaaagatcttccgcttaaaagagggcagatatggacaccacatagaatgcgtgttcctagaaagtgcagtgacagatgttatataaatcgtgtattgcctgtactcatgaaaagaacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="45062" stop="48179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45362" g_stop="45664" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="303" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45665" i_stop="45793" i_length="129">
            <donor d_prob="0.923" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45794" g_stop="45844" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="354" r_length="51" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="45845" i_stop="45942" i_length="98">
            <donor d_prob="0.871" d_score="1.00"/>
            <acceptor a_prob="0.463" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="45943" g_stop="46033" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="445" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46034" i_stop="46210" i_length="177">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46211" g_stop="46287" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="446" r_stop="522" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46288" i_stop="47454" i_length="1167">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.891" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="47455" g_stop="47543" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="523" r_stop="611" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="47544" i_stop="47695" i_length="152">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="47696" g_stop="47875" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="612" r_stop="791" r_length="180" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E701658" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>791</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701658" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45362" e_stop="45664"/>
          <exon e_start="45794" e_stop="45844"/>
          <exon e_start="45943" e_stop="46033"/>
          <exon e_start="46211" e_stop="46287"/>
          <exon e_start="47455" e_stop="47543"/>
          <exon e_start="47696" e_stop="47875"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACCCCAAAATCTTCTCTAACAAATCTGTATTTCCAATAATACCCCTAAACCCTGTCCTCCGCGACACCACCGGAGGAGTCGTCAAAAATCAGCAAACACGCTTCCGACCACCAATCATCGCCGCCGTATGGCTATTCCACGGCGGCGCCACCAGCATCATCACAGCCGTGTGCGGTTTCTGTTCCCGGCAATTTTTGCTGTTTCCGCCATTATCCTCTTCTTATTCCTCTTCCTATCAATCCTCGCTCCGTCTCCTAATGATGATAATCACCTCCGCCATCTCCGTCGTGATGATTCATCGGTACATTAAATTAATCAATCACGCTGACGAAAAAAATGCTAAAATGTTTAATTTAATTGTGAAGTATTAATTAATTGATTAATATATGATAAAGTGTTAATTTGATTATATAATTTGTGACTTGTGTAGGAAGGGAAAAGCCGTAGTAATGAGAATAGAGTGAGTTTATCTCGTGTTAAGGTTGGGATTTAATCTGAATCTTATTGATTTCATTTGTGATTTGATTTGGTTTGGATCTAAGGTTGCTAAATGTGGTGTGGTTGATTGTTGAGTTCTAGATCAATGCAGAAGTTCATAATCGTGATCTCTGGAGTTCGAAAAATTCAAAGTTTTTCTATGGATGCAGTAATGCCAGCAGTAAATTTGCAAGTGCGTAAACTCGAAAATGAGCTCAATAGCTCAGCTTCTTTTATAGCATTTGTATTTGAAAAAAATAGAAGTAATCAGTTTTTTTTAGTATGTTTATGCAGCAGTAGTGGAGTTATTAATCAGGTTGAATTTGATCATTGAAATCTGATTGCGTATTTGTACTGTTTCAAATTGCAGAAGCCAAAACGATCACACATCCGAATCGATACTTGTTAATTGTCACAAGTGGAGGTCTTAACCAACAAAGAACTGGGGTAAGAAAATATTACCAGCTTGGTTTTTTAGAATTGAATATGGATTCTGTTTTAATTTGTTGACTAACTAGAAATGAGATTCTGGTCGAGAAACTGTTTTTTTCCAACACTTAAAGACAAATAAGGTAGTTGATTCAGTGATTGTTGTATTTTATAGGGTAGTTCAGATGACCTTGTCTTTTCTATTTTTAGATAGTTAATGCACAAGCAAGCCCGAATAAAGGTATCAGGTTGCTTTAGGTTCACAATTGTTAAAGCTAGTCTATTTATGAGGAATATCATCATTAAAATGTCTTGGGATGTGCTTTTCTAGATACGGCTACATCGGAACATGGATTGAAAAATCGGCACCCTTAATGTTCTAAAAGACAAATTACTGTGTATTGTAATAAAGAGGTCCAAATGAAGCTGGATGGATATAAAAGACTGTTTTAGCTAACTCAACTAGTTTGGTATTGAGACAGTTGTCGGTATTTTTGTAAGCACATGCACTGACAATCAAGGCATTAGATTTCACAGTGAACAACGCCACAATGCCCATTAATTAGGAGGTTCTCTATACCAGTAAGTGGAGAAGCTTTATGCAACTGGTTGGATATAACATCTTATGGTTGTTCAAGTGCTGCAGAATTTTATGTTCAGTTTGTGACTTTCTGTCATATCAATGTTGTTGATTTTTATTTTTGACTATTGCAAGATATTCTTGATATGTAAATGAGTGCAACTAATTTTGGACTGAGTTATAGTTGTTGATTGATCATTGATTCATTAGAACCTCAAGATGCACCTAATTTGATTGGACAGAGAAGTAATGATTATAAATCCCCAGTACAAAATCATATCTGGTGATAGCCAATCTGTCTGCATAATCATGCTCTGGGATTTGATGATTGCGCTATACTTATTTGCACTTTTAAGTAAATTGGCTACAGAAGATACACTTAAAAATTACCAGCCCATGCTAACTATAGGTTGTCAAATACTCCTCTATACGTAACATGATTCTGATAATTCCATCTATTTTTTTCTAATGTATGGCCCTTTGAGTTGGCACTCCTTTCTGTTACCACCCGTGTACTTTAGCTTTCTGCTGGAACCAAAATATAAGACTGTGAAGCGTGGAACCTTCTATAGTTAACGGTGTAAGCTGGTCCATCTTTATGGCAGATAACTGATGCTGTTGTTGCTGCTCGCATTTTAAATGCCACTCTTGTTGTTCCAAAGTTGGACAAGACGTCTTTCTGGAAAGATTCTAGGTGAGTGAGTAGTATCAGAAGAATGATTTAGTATTTTCTTGCATATTGGTTTCTCCAACCATCACTCAACTTATTATTGTGTAGGTACATTTAAAATACTAATAATCCTGCTTGTAACTGTGAAAGTGAAATGATCTCCTTTTCTGTTGCAGTGACTTCTCTGATATATTTGATGTTGATTGGTTTATAAAACATCTAACAACAGATGTTACAATTATAAAAGATCTTCCGCTTAGAAGAGGGCAGATATGGACACCACATAGAATGCGTGTTCCTAGAAAGTGCAGTGACAGATGTTATATAAATCGTGTATTGCCTGTACTCATGAAAAG</genome_strand>
        <mrna_strand>AAACCCCAAAATCTTCTCTAACAAATCTGTATTTCCAATAATACCCCTAAACCCTGTCCTCCGCGACACCACCGGAGGAGTCGTCAAAAATCAGCAAACACGCTTCCGACCACCAATCATCGCCGCCGTATGGCTATTCCACGGCGGCGCCACCAGCATCATCACAGCCGTGTGCGGTTTCTGTTCCCGGCAATTTTTGCTGTTTCCGCCATTATCCTCTTCTTATTCCTCTTCCTATCAATCCTCGCTCCGTCTCCTAATGATGATAATCACCTCCGCCATCTCCGTCGTGATGATTCATCG.................................................................................................................................GAAGGGAAAAGCCGTAGTAATGAGAATAGAGTGAGTTTATCTCGTGTTAAG..................................................................................................ATCAATGCAGAAGTTCATAATCGTGATCTCTGGAGTTCGAAAAATTCAAAGTTTTTCTATGGATGCAGTAATGCCAGCAGTAAATTTGCAA.................................................................................................................................................................................AAGCCAAAACGATCACACATCCGAATCGATACTTGTTAATTGTCACAAGTGGAGGTCTTAACCAACAAAGAACTGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACTGATGCTGTTGTTGCTGCTCGCATTTTAAATGCCACTCTTGTTGTTCCAAAGTTGGACAAGACGTCTTTCTGGAAAGATTCTAG........................................................................................................................................................TGACTTCTCTGATATATTTGATGTTGATTGGTTTATAAAACATCTAACAACAGATGTTACAATTATAAAAGATCTTCCGCTTAAAAGAGGGCAGATATGGACACCACATAGAATGCGTGTTCCTAGAAAGTGCAGTGACAGATGTTATATAAATCGTGTATTGCCTGTACTCATGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E206698" ref_strand="+" ref_description="SGN-E206698 [cLEC-31-A4]">
      <seq>caaagaattaggcgtcgaaaaatccgggagaaatgctgaaggagattcatggttggaaacatggcaggaagttcttcatcaagacgaatggagcaatttagctaggatagagaggagtgcgcaaaaacaagcaaaatcgggtacagagaatgctgggtggtatgagaattggtcagaaaagtatgatgcaaagggttggacagagaaaggagcccacaagtatggtagactgaatgaacagtcgtggtgggaaaaatggggagaggaatatgatggaagaggatctgtccttaaatggactgataagtgggcagaaagtgaattgggaacaaaatgggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="55052" stop="56553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55216" g_stop="55226" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55227" i_stop="55365" i_length="139">
            <donor d_prob="0.963" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="55366" g_stop="55447" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="93" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="55448" i_stop="55574" i_length="127">
            <donor d_prob="0.929" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55575" g_stop="55652" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="94" r_stop="171" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55653" i_stop="55732" i_length="80">
            <donor d_prob="0.790" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55733" g_stop="55858" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="297" r_length="126" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="55859" i_stop="56211" i_length="353">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56212" g_stop="56253" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="339" r_length="42" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E206698" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206698" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55216" e_stop="55226"/>
          <exon e_start="55366" e_stop="55447"/>
          <exon e_start="55575" e_stop="55652"/>
          <exon e_start="55733" e_stop="55858"/>
          <exon e_start="56212" e_stop="56253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGAATTAGGTAATACTAATTTTTGTCTTGCATTTATATGTTGTAACCATATTACTCATTGATCTGAGTATTGCTTTTAGTCAAGCAATGTCACTTGTACTTCTGGGATTCATAATTTATCACGTTTTTGTTTCTTTAATGATTGTAGGCGTCGAAAAATCCGGGAGAAATGCTGAAGGAGATTCATGGTTGGAAACATGGCAGGAAGTTCTTCATCAAGACGAATGGAGGTTGTGTATCCAACTTTTTGTGATATTATATGCTGTTGAATCCTCCTGGTTATGGTGTTTAATATCATTGTATTTAACACTTTGACAAAACCGTTACACATATATAACACTGCATTTTCTACTTCAGCAATTTAGCTAGGATAGAGAGGAGTGCGCAAAAACAAGCAAAATCGGGTACAGAGAATGCTGGGTGGTATGAGAATTGGTAAGACTTGTGAAATGGAAGATTCGTAATCATGTTGTCATGAACAATGAAATAATCTGCAAATATTTATTTTGATGCAGGTCAGAAAAGTATGATGCAAAGGGTTGGACAGAGAAAGGAGCCCACAAGTATGGTAGACTGAATGAACAGTCGTGGTGGGAAAAATGGGGAGAGGAATATGATGGAAGAGGATCTGTCCTTAAATGGTATGTTGTTTTTCCATTATCCAAAATAAAAAGGTACTTATTTAATTTGTTTTCTTAAAGACGAAAAGGAGTTGCTTCAAGTTGTCAGAAACGCTGGACTTGTTGGAAATTTTTAATAAGGAAGTTGGAATATTAAACGTTACTGATTTTCAACAAAAACCTTTACTTCATAAAAATAAATATTTGAATGAGAAGCTATGATATATGCCTTCACTAATAGTATAATTGAGGTCGATAATTTGCTTTATAAGATAATAGAGTGGTTAACTGCTTATGTATGACCTATTTGTGGTTAACAAAACGATTCACCTCCGCATTTTGTTGCTTATAGAATCATATACTCTCTTTCTCAGGACTGATAAGTGGGCAGAAAGTGAATTGGGAACAAAATGGGG</genome_strand>
        <mrna_strand>CAAAGAATTAG...........................................................................................................................................GCGTCGAAAAATCCGGGAGAAATGCTGAAGGAGATTCATGGTTGGAAACATGGCAGGAAGTTCTTCATCAAGACGAATGGAG...............................................................................................................................CAATTTAGCTAGGATAGAGAGGAGTGCGCAAAAACAAGCAAAATCGGGTACAGAGAATGCTGGGTGGTATGAGAATTG................................................................................GTCAGAAAAGTATGATGCAAAGGGTTGGACAGAGAAAGGAGCCCACAAGTATGGTAGACTGAATGAACAGTCGTGGTGGGAAAAATGGGGAGAGGAATATGATGGAAGAGGATCTGTCCTTAAATG.................................................................................................................................................................................................................................................................................................................................................................GACTGATAAGTGGGCAGAAAGTGAATTGGGAACAAAATGGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E228957" ref_strand="-" ref_description="SGN-E228957 [cLEL-29-G9]">
      <seq>tatccaaacattgatttgggtcatctgtgccccagacgatgagtcccctccaactagatgatttcttctcaccgatactggagagagatagtaagtatgttggtatagtcgtgatgtatgtgcaatttggcatgaacaccatcgtaagtctcctccaacatcttctcagtgacaacgcgtcatctcattcatcacgattgattctcaagatagatagctagcttacatttttttttcaaaatttagttgtaaccttttgctagttgctacagtcagtttatttcattctttaagcgttgtggtatttgcatctgttttgtatgtttgacatgttctagagggccgtttggatctctcaagtcaaaattttggcattttttagttcaatgctcaagaatcttgcattatcgatttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="56738" stop="57759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57038" g_stop="57455" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="416" r_length="416" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="417" polyA_stop="432"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E228957" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228957" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="57038" e_stop="57455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATCCAAACATTGATTTTGGGTCATCTGTGCCTCCAGACGATGAGTCCCCTCCAACTAGATGATTTCTTCTCACCGATACTGGAGAGAGATAGTAAGTATGTTGGTATAGTCGTGATGTATGTGCAATTTGGCATGAACACCATCGTAAGTCTCCTCCAACATCTTCACAGTGACAACGCGTCATCTCATTCATCACGATTGATTCTCAAGATAGATAGCTAGCTTACATTTTTTTTTCAAAATTTAGTTGTAACCTTTTGCTAGTTGCTACAGTCAGTTTATTTCATTCTTTCAGCGTTGTGGTATTTGCATTTGTTTTGTATGTTTGACATGTTCTAGAGGTCCTTTTGGATCTCTCAAGTCAAAATTTTGACATTTTTTAGTTCAATGCTCAAGAATCTTGCATTATCGATTTCA</genome_strand>
        <mrna_strand>TATCCAAACATTGATTT-GGGTCATCTGTGCC-CCAGACGATGAGTCCCCTCCAACTAGATGATTTCTTCTCACCGATACTGGAGAGAGATAGTAAGTATGTTGGTATAGTCGTGATGTATGTGCAATTTGGCATGAACACCATCGTAAGTCTCCTCCAACATCTTCTCAGTGACAACGCGTCATCTCATTCATCACGATTGATTCTCAAGATAGATAGCTAGCTTACATTTTTTTTTCAAAATTTAGTTGTAACCTTTTGCTAGTTGCTACAGTCAGTTTATTTCATTCTTTAAGCGTTGTGGTATTTGCATCTGTTTTGTATGTTTGACATGTTCTAGAGGGCCGTTTGGATCTCTCAAGTCAAAATTTTGGCATTTTTTAGTTCAATGCTCAAGAATCTTGCATTATCGATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E228861" ref_strand="-" ref_description="SGN-E228861 [cLEL-29-G9]">
      <seq>tagtaagtatgttggtatagtcgtgatgtatgtgcaatttggcatgaacaccatcgtaagtctcctccaacatcttcacagtgacaacgcgtcatctcattcatcacgattgattctcaagatagatagctagcttacatttttttttcaaaatttagttgtaaccttttgctagttgctacagtcagtttatttcattctttcagcgttgtggtatttgcatttgttttgtatgtttgacatgttctagaggtccttttggatctctcaagtcaaaattttgacattttttagttcaatgctcaagaatcttgcattatcgatttcaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="56828" stop="57759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="57128" g_stop="57455" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="328" r_length="328" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="329" polyA_stop="344"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E228861" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228861" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="57128" e_stop="57455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTAAGTATGTTGGTATAGTCGTGATGTATGTGCAATTTGGCATGAACACCATCGTAAGTCTCCTCCAACATCTTCACAGTGACAACGCGTCATCTCATTCATCACGATTGATTCTCAAGATAGATAGCTAGCTTACATTTTTTTTTCAAAATTTAGTTGTAACCTTTTGCTAGTTGCTACAGTCAGTTTATTTCATTCTTTCAGCGTTGTGGTATTTGCATTTGTTTTGTATGTTTGACATGTTCTAGAGGTCCTTTTGGATCTCTCAAGTCAAAATTTTGACATTTTTTAGTTCAATGCTCAAGAATCTTGCATTATCGATTTCA</genome_strand>
        <mrna_strand>TAGTAAGTATGTTGGTATAGTCGTGATGTATGTGCAATTTGGCATGAACACCATCGTAAGTCTCCTCCAACATCTTCACAGTGACAACGCGTCATCTCATTCATCACGATTGATTCTCAAGATAGATAGCTAGCTTACATTTTTTTTTCAAAATTTAGTTGTAACCTTTTGCTAGTTGCTACAGTCAGTTTATTTCATTCTTTCAGCGTTGTGGTATTTGCATTTGTTTTGTATGTTTGACATGTTCTAGAGGTCCTTTTGGATCTCTCAAGTCAAAATTTTGACATTTTTTAGTTCAATGCTCAAGAATCTTGCATTATCGATTTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E707829" ref_strand="+" ref_description="SGN-E707829 [FA34AD03]">
      <seq>ctctaaagcagaacaacttcacatacgactggatagtccgaactcgagttgatggctactggtcttcaccactaggccccgaaaacttcatccccgggcgttacctcgtccctccaggttcctcctacggaggcctgaacgatcgttttggcgttggtgactacaacacatcggtgattgctctttcgaggctctccatgataccccagcttgatttagcagggcgtattcagctcaactcagaaagtgcattcaaagcccaacttacaactcaacaagtcccttacctaactatgtgccttcccttttgtgtagtaacggatcgtcagtacgaatttccaccatcccattatggcgtaccggttgcagcactttctagtcgaggccccctgagtggggccaaatgccggccgtgcacgcccgtgtgcaccgggtcatgcgttgaggttgccatgaatagactagataaaggatggagttggacggattgggccaataactctctcgagctatgcgatgctcacgctgaatgggagagcgggtgggagagagttttcgacagagtggcggggaaaaagcttgctgcagctagaagaaggattgatggaatgaaattagatcaatgtattagggaatttgctgagatgaagaataaaacttcacgttgggaggctccatcaggtacagaaatttgtagtttaggtttgttggacactccccaaagctaaaaagaaggaacccgtcctttcgagcttctagttcttctggattgcaacccacgagggcactctagagcaacctttgaacgcgttccgccttattatttagtgtatcgagttacatattgtttatttcttgaaaaaaaaagatccatttacacataataggattcttaatagttctaagtaatactgattcaagtgttaggctctactgaataatgaaatataccatccctttggtaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="70206" stop="71769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70505" g_stop="71466" g_length="962"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="961" r_length="961" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="964" polyA_stop="980"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E707829" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>962</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E707829" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70505" e_stop="71466"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAAAGCAGAACAACTTCACATACGACTGGATAGTCCGAACTCGAGTTGATGGCTACTGGTCTTCACCACTAGGCCCCGAAAACTTCATCCCCGGGCGTTACCTCGTCCCTCCAGGTTCCTCCTACGGAGGCCTGAACGATCGTTTTGGCGTTGGTGACTACAACACATCGGTGATTGCTCTTTCGAGGCTCTCCATGATACCCCAGCTTGATTTAGCAGGGCGTATTCAGCTCAACTCAGAAAGTGCATTCAAAGCCCAACTTACAACTCAACAAGTCCCTTACCTAACTATGCGCCTTCCCTTTTGTGTAGTAACGGATCGTCAGTACGAATTTCCACCATCCCATTATGGCGTACCGGTTGCAGCACTTTCTAGTCGAGGCCCCCTGAGTGGGGCCAAATGCCGGCCGTGCACGCCCGTGTGCACCGGGTCATGCGTTGAGGTTGCCATGAATAGACTAGATAAAGGATGGAGTTGGACGGATTGGGCCAATAACTCTCTCGAGCTATGCGATGCTCACGCTGAATGGGAGAGCGGGTGGGAGAGAGTTTTCGACAGAGTGGCGGGGAAAAAGCTTGCTGCAGCTAGAAGAAGGATTGATGGAATGAAATTAGATCAATGTATTAGGGAATTTGCTGAGATGAAGAATAAAACTTCACGTTGGGAGGCTCCATCAGGTACAGAAATTTGTAGTTTAGGTTTGTTGGACACTCCCCAAAGCTAAAAAGAAGGAACCCGTCCTTTCGAGCTTCTAGTTCTTCTGGATTGCAACCCACGAGGGCACTCTAGAGCAACCTTTGAACGCGTTCCGCCTTATTATTTAGTGTATCGAGTTACATATTGTTTATTTCTTGAAAAAAAAAAAGTCCATTTACACATAGTAGGATTCTTAATAGTTCTTAGTATAACTGATTCAAGTGTTAGGCTCTACTGAATAATGAAATATAGCATCACTTTG</genome_strand>
        <mrna_strand>CTCTAAAGCAGAACAACTTCACATACGACTGGATAGTCCGAACTCGAGTTGATGGCTACTGGTCTTCACCACTAGGCCCCGAAAACTTCATCCCCGGGCGTTACCTCGTCCCTCCAGGTTCCTCCTACGGAGGCCTGAACGATCGTTTTGGCGTTGGTGACTACAACACATCGGTGATTGCTCTTTCGAGGCTCTCCATGATACCCCAGCTTGATTTAGCAGGGCGTATTCAGCTCAACTCAGAAAGTGCATTCAAAGCCCAACTTACAACTCAACAAGTCCCTTACCTAACTATGTGCCTTCCCTTTTGTGTAGTAACGGATCGTCAGTACGAATTTCCACCATCCCATTATGGCGTACCGGTTGCAGCACTTTCTAGTCGAGGCCCCCTGAGTGGGGCCAAATGCCGGCCGTGCACGCCCGTGTGCACCGGGTCATGCGTTGAGGTTGCCATGAATAGACTAGATAAAGGATGGAGTTGGACGGATTGGGCCAATAACTCTCTCGAGCTATGCGATGCTCACGCTGAATGGGAGAGCGGGTGGGAGAGAGTTTTCGACAGAGTGGCGGGGAAAAAGCTTGCTGCAGCTAGAAGAAGGATTGATGGAATGAAATTAGATCAATGTATTAGGGAATTTGCTGAGATGAAGAATAAAACTTCACGTTGGGAGGCTCCATCAGGTACAGAAATTTGTAGTTTAGGTTTGTTGGACACTCCCCAAAGCTAAAAAGAAGGAACCCGTCCTTTCGAGCTTCTAGTTCTTCTGGATTGCAACCCACGAGGGCACTCTAGAGCAACCTTTGAACGCGTTCCGCCTTATTATTTAGTGTATCGAGTTACATATTGTTTATTTCTTGAAAAAAAAAGA-TCCATTTACACATAATAGGATTCTTAATAGTTCTAAGTAATACTGATTCAAGTGTTAGGCTCTACTGAATAATGAAATATACCATCCCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E277426" ref_strand="-" ref_description="SGN-E277426 [cLER-3-H7]">
      <seq>tactgtcgatcaatcccggagtctctgttcaattttctcgggaatcgtgagtatgatttcgtcggaattggaattgaaagcgatgtggagaaattgttggaggattatgagctgaatgttaagaatatggtggatttgagaggaattgctgctgatgtatatggtatgaagaatttgaagaatgctgggttgaaggaactatgcaatgtcgttctggaaaaggagattgttaagccaaaatctgttactatgggtagatgggatagtgaatggttgagtttgaatcaaatccaatatgcttgtcttgatgtgtttcttctgaaattgctaagcacttgaatgtaggtgctgcttctactcgaagatattagaatccgactatttcaaatttacgtagaaacagtatagatatagaatttgatggatgaagttttatttgagaatttgttgcgtatttactttgtcacgtttcgtttcttatatttgaatttatgaatgttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="72319" stop="71217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72019" g_stop="71520" g_length="500"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="500" r_length="500" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="501" polyA_stop="520"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E277426" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>500</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E277426" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="72019" e_stop="71520"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTGTCGATCAATCCCGGAGTCTCTGTTCAATTTTCTCGGGAATCGTGAGTATGATTTCGTCGGAATTGGAATTGAAAGCGATGTGGAGAAATTGTTGGAGGATTATGAGCTGAATGTTAAGAATATGGTGGATTTGAGAGGAATTGCTGCTGATGTATATGGTATGAAGAATTTGAAGAATGCTGGGTTGAAGGAACTATGCAATGTCGTTCTGGAAAAGGAGATTGTTAAGCCAAAATCTGTTACTATGGGTAGATGGGATAGTGAATGGTTGAGTTTGAATCAAATCCAATATGCTTGTCTTGATGTGTTTCTTCTGAAATTGCTAAGCACTTGAATGTAGGTGCTGCTTCTACTCGAAGATATTAGAATCCGACTATTTCAAATTTACGTAGAAACAGTATAGATATAGAATTTGATGGATGAAGTTTTATTTGAGAATTTGTTGCGTATTTACTTTGTCACGTTTCGTTTCTTATATTTGAATTTATGAATGTT</genome_strand>
        <mrna_strand>TACTGTCGATCAATCCCGGAGTCTCTGTTCAATTTTCTCGGGAATCGTGAGTATGATTTCGTCGGAATTGGAATTGAAAGCGATGTGGAGAAATTGTTGGAGGATTATGAGCTGAATGTTAAGAATATGGTGGATTTGAGAGGAATTGCTGCTGATGTATATGGTATGAAGAATTTGAAGAATGCTGGGTTGAAGGAACTATGCAATGTCGTTCTGGAAAAGGAGATTGTTAAGCCAAAATCTGTTACTATGGGTAGATGGGATAGTGAATGGTTGAGTTTGAATCAAATCCAATATGCTTGTCTTGATGTGTTTCTTCTGAAATTGCTAAGCACTTGAATGTAGGTGCTGCTTCTACTCGAAGATATTAGAATCCGACTATTTCAAATTTACGTAGAAACAGTATAGATATAGAATTTGATGGATGAAGTTTTATTTGAGAATTTGTTGCGTATTTACTTTGTCACGTTTCGTTTCTTATATTTGAATTTATGAATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E201511" ref_strand="+" ref_description="SGN-E201511 [cLEC-4-H3]">
      <seq>aaaacaatactcttaactatagacggagaatcccgatgatggcacagtataacaataattctaccgtcgatccaaaatccggctattcaccggcgaattcaactttctacagcaaacgtagaccaattccgtttccggcgaatgaatctattgatgtaacaactttcatttcttcacgagcacatagcgggaaaatcgctttcatcgatgctacgactggtcggaaactcagtttctccgacgtatggaacgccgttgagtcgttagctactagtttatcagttgatatgagtattcgtaaaggtgatgttggtcttctcctttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="77852" stop="78778"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78152" g_stop="78478" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="327" r_length="327" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E201511" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78152" e_stop="78478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAACAATACTCTTAACTATAGACGGAGAATCCCGATGATGGCACAGTATAACAATAATTCTACCGTCGATCCAAAATCCGGCTATTCACCGGCGAATTCAACTTTCTACAGCAAACGTAGACCAATTCCGTTTCCGGCGAATGAATCTATTGATGTAACAACTTTCATTTCTTCACGAGCACATAGCGGGAAAATCGCTTTCATCGATGCTACGACTGGTCGGAAACTCAGTTTCTCCGACGTATGGAACGCCGTTGAGTCGTTAGCTACTAGTTTATCAGTTGATATGAGTATTCGTAAAGGTGATGTTGTTCTTCTCCTTTCTC</genome_strand>
        <mrna_strand>AAAACAATACTCTTAACTATAGACGGAGAATCCCGATGATGGCACAGTATAACAATAATTCTACCGTCGATCCAAAATCCGGCTATTCACCGGCGAATTCAACTTTCTACAGCAAACGTAGACCAATTCCGTTTCCGGCGAATGAATCTATTGATGTAACAACTTTCATTTCTTCACGAGCACATAGCGGGAAAATCGCTTTCATCGATGCTACGACTGGTCGGAAACTCAGTTTCTCCGACGTATGGAACGCCGTTGAGTCGTTAGCTACTAGTTTATCAGTTGATATGAGTATTCGTAAAGGTGATGTTGGTCTTCTCCTTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E210968" ref_strand="+" ref_description="SGN-E210968 [cLEC-69-P1]">
      <seq>tcttagctatagacggagaatcccgatgatggcacagcataacaataattctaccgtcgatccaaaatccggctattcaccggcgaattcaactttctacagcaaacgtagaccaattccgtttccggcgaatgaatctattgatgtaacaactgtcatttcttcacgagcacatagcgggaaaatcgctttcatccatgctacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="77862" stop="78666"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78162" g_stop="78366" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="205" r_length="205" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E210968" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>205</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E210968" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78162" e_stop="78366"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTAACTATAGACGGAGAATCCCGATGATGGCACAGTATAACAATAATTCTACCGTCGATCCAAAATCCGGCTATTCACCGGCGAATTCAACTTTCTACAGCAAACGTAGACCAATTCCGTTTCCGGCGAATGAATCTATTGATGTAACAACTTTCATTTCTTCACGAGCACATAGCGGGAAAATCGCTTTCATCGATGCTACG</genome_strand>
        <mrna_strand>TCTTAGCTATAGACGGAGAATCCCGATGATGGCACAGCATAACAATAATTCTACCGTCGATCCAAAATCCGGCTATTCACCGGCGAATTCAACTTTCTACAGCAAACGTAGACCAATTCCGTTTCCGGCGAATGAATCTATTGATGTAACAACTGTCATTTCTTCACGAGCACATAGCGGGAAAATCGCTTTCATCCATGCTACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E268922" ref_strand="+" ref_description="SGN-E268922 [cLEM-4-D12]">
      <seq>tggcacagtataacaataattctaccgtcgatccaaaatccggctattcaccggcgaattcaactttctacagcaaacgtagaccaattccgtttccggcgaatgaatctattgatgtaacaactttcatttcttcacgagcacatagcgggaaaatcgctttcatcgatgctacgactggtcggaaactcagtttctccgacgtatggaacgccgttgagtcgttagctactagtttatcagttgatatgagtattcgtaaaggtgatgttgttcttctcctttctcctaattccattttcttccctattatttgtctcgccgttatgtcactaggagctataatcactacaacgaatccactcaacacgaacagcgaaatcgctaaacagatcaaggattcgaatcctgttctcgcttttacaatccctcaactactcccgaaactcaccggatttaatctcccggtgattttaatcgacggagtgaatgattcaaattcgaatctcaaaatcgttggggatttacagaaattgattcagagaaaacctagtgaaagcagattgaaagagagagttacacaaaacgacgtagctactctgctttactcatctggtactacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="77891" stop="79113"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78191" g_stop="78813" g_length="623"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="623" r_length="623" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E268922" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268922" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78191" e_stop="78813"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCACAGTATAACAATAATTCTACCGTCGATCCAAAATCCGGCTATTCACCGGCGAATTCAACTTTCTACAGCAAACGTAGACCAATTCCGTTTCCGGCGAATGAATCTATTGATGTAACAACTTTCATTTCTTCACGAGCACATAGCGGGAAAATCGCTTTCATCGATGCTACGACTGGTCGGAAACTCAGTTTCTCCGACGTATGGAACGCCGTTGAGTCGTTAGCTACTAGTTTATCAGTTGATATGAGTATTCGTAAAGGTGATGTTGTTCTTCTCCTTTCTCCTAATTCCATTTTCTTCCCTATTATTTGTCTCGCCGTTATGTCACTAGGAGCTATAATCACTACAACGAATCCACTCAACACGAACAGCGAAATCGCTAAACAGATCAAGGATTCGAATCCTGTTCTCGCTTTTACAATCCCTCAACTACTCCCGAAACTCACCGGATTTAATCTCCCGGTGATTTTAATCGACGGAGTGAATGATTCAAATTCGAATCTCAAAATCGTTGGGGATTTACAGAAATTGATTCAGAGAAAACCTAGTGAAAGCAGATTGAAAGAGAGAGTTACACAAAACGACGTAGCTACTCTGCTTTACTCATCTGGTACTACC</genome_strand>
        <mrna_strand>TGGCACAGTATAACAATAATTCTACCGTCGATCCAAAATCCGGCTATTCACCGGCGAATTCAACTTTCTACAGCAAACGTAGACCAATTCCGTTTCCGGCGAATGAATCTATTGATGTAACAACTTTCATTTCTTCACGAGCACATAGCGGGAAAATCGCTTTCATCGATGCTACGACTGGTCGGAAACTCAGTTTCTCCGACGTATGGAACGCCGTTGAGTCGTTAGCTACTAGTTTATCAGTTGATATGAGTATTCGTAAAGGTGATGTTGTTCTTCTCCTTTCTCCTAATTCCATTTTCTTCCCTATTATTTGTCTCGCCGTTATGTCACTAGGAGCTATAATCACTACAACGAATCCACTCAACACGAACAGCGAAATCGCTAAACAGATCAAGGATTCGAATCCTGTTCTCGCTTTTACAATCCCTCAACTACTCCCGAAACTCACCGGATTTAATCTCCCGGTGATTTTAATCGACGGAGTGAATGATTCAAATTCGAATCTCAAAATCGTTGGGGATTTACAGAAATTGATTCAGAGAAAACCTAGTGAAAGCAGATTGAAAGAGAGAGTTACACAAAACGACGTAGCTACTCTGCTTTACTCATCTGGTACTACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E268228" ref_strand="+" ref_description="SGN-E268228 [cLEM-3-A22]">
      <seq>tggcacagtataacaataattctaccgtcgatccaaaatccggctattcaccggcgaattcaactttctacagcaaacgtagaccaattccgtttccggcgaatgaatctattgatgtaacaactttcatttcttcacgagcacatagcgggaaaatcgctttcatcgatgctacgactggtcggaaactcagtttctccgacgtatggaacgccgttgagtcgttagctactagtttatcagttgatatgagtattcgtaaaggtgatgttgttcttctcctttctcctaattccattttcttccctattatttgtctcgccgttatgtcactaggagctataatcactacaacgaatccactcaacacgaacagcgaaatcgctaaacagatcaaggattcgaatcctgttctcgcttttacaatccctcaactactcccgaaactcaccggatttaatctcccggtgattttaatcgacggagtgaatgattcaaattcgaatctcaaaatcgttggggatttacagaaattgattcagagaaaacctagtgaaagcagattgaaagagagagttacacaaaacgacgtagctactctgctttactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="77891" stop="79100"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78191" g_stop="78800" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="610" r_length="610" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E268228" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268228" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78191" e_stop="78800"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGCACAGTATAACAATAATTCTACCGTCGATCCAAAATCCGGCTATTCACCGGCGAATTCAACTTTCTACAGCAAACGTAGACCAATTCCGTTTCCGGCGAATGAATCTATTGATGTAACAACTTTCATTTCTTCACGAGCACATAGCGGGAAAATCGCTTTCATCGATGCTACGACTGGTCGGAAACTCAGTTTCTCCGACGTATGGAACGCCGTTGAGTCGTTAGCTACTAGTTTATCAGTTGATATGAGTATTCGTAAAGGTGATGTTGTTCTTCTCCTTTCTCCTAATTCCATTTTCTTCCCTATTATTTGTCTCGCCGTTATGTCACTAGGAGCTATAATCACTACAACGAATCCACTCAACACGAACAGCGAAATCGCTAAACAGATCAAGGATTCGAATCCTGTTCTCGCTTTTACAATCCCTCAACTACTCCCGAAACTCACCGGATTTAATCTCCCGGTGATTTTAATCGACGGAGTGAATGATTCAAATTCGAATCTCAAAATCGTTGGGGATTTACAGAAATTGATTCAGAGAAAACCTAGTGAAAGCAGATTGAAAGAGAGAGTTACACAAAACGACGTAGCTACTCTGCTTTACTC</genome_strand>
        <mrna_strand>TGGCACAGTATAACAATAATTCTACCGTCGATCCAAAATCCGGCTATTCACCGGCGAATTCAACTTTCTACAGCAAACGTAGACCAATTCCGTTTCCGGCGAATGAATCTATTGATGTAACAACTTTCATTTCTTCACGAGCACATAGCGGGAAAATCGCTTTCATCGATGCTACGACTGGTCGGAAACTCAGTTTCTCCGACGTATGGAACGCCGTTGAGTCGTTAGCTACTAGTTTATCAGTTGATATGAGTATTCGTAAAGGTGATGTTGTTCTTCTCCTTTCTCCTAATTCCATTTTCTTCCCTATTATTTGTCTCGCCGTTATGTCACTAGGAGCTATAATCACTACAACGAATCCACTCAACACGAACAGCGAAATCGCTAAACAGATCAAGGATTCGAATCCTGTTCTCGCTTTTACAATCCCTCAACTACTCCCGAAACTCACCGGATTTAATCTCCCGGTGATTTTAATCGACGGAGTGAATGATTCAAATTCGAATCTCAAAATCGTTGGGGATTTACAGAAATTGATTCAGAGAAAACCTAGTGAAAGCAGATTGAAAGAGAGAGTTACACAAAACGACGTAGCTACTCTGCTTTACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E207424" ref_strand="+" ref_description="SGN-E207424 [cLEC-36-J16]">
      <seq>attctaccgtcgatccaaaatccggctattcaccggcgaattcaactttctacagcaaacgtagaccaattccgtttccggcgaatgaatctattgatgtaacaactttcatttcttcacgagcacatagcgggaaaatcgctttcatcgatgctacgactggtcggaaactcagtttctccgacgtatggaacgccgttgagtcgttagctactagtttatcagttgatatgagtattcgtaaaggtgatgttgttcttctcctttctcctaattccattttcttccctattatttgtctcgccgttatgtcactaggagctataatcactacaacgaatccactcaacacgaacagcgaaatcgctaaacagatcaaggattcgaatcctgttctcgcttttacaatccctcaactactcccgaaactcaccggatttaatctcccggtgattttaatcgacggagtgaatgattcaaattcgaatctcaaaatcgttggggatttacagaaattgattcagagaaaacctagtgaaagcagattgaaagagagagttacacaaaacgacgtagctactctgctttactcatctggtactaccggagcaagcaaaggagttatttcatctcacaaaaacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="77909" stop="79151"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78209" g_stop="78851" g_length="643"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="643" r_length="643" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E207424" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207424" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78209" e_stop="78851"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCTACCGTCGATCCAAAATCCGGCTATTCACCGGCGAATTCAACTTTCTACAGCAAACGTAGACCAATTCCGTTTCCGGCGAATGAATCTATTGATGTAACAACTTTCATTTCTTCACGAGCACATAGCGGGAAAATCGCTTTCATCGATGCTACGACTGGTCGGAAACTCAGTTTCTCCGACGTATGGAACGCCGTTGAGTCGTTAGCTACTAGTTTATCAGTTGATATGAGTATTCGTAAAGGTGATGTTGTTCTTCTCCTTTCTCCTAATTCCATTTTCTTCCCTATTATTTGTCTCGCCGTTATGTCACTAGGAGCTATAATCACTACAACGAATCCACTCAACACGAACAGCGAAATCGCTAAACAGATCAAGGATTCGAATCCTGTTCTCGCTTTTACAATCCCTCAACTACTCCCGAAACTCACCGGATTTAATCTCCCGGTGATTTTAATCGACGGAGTGAATGATTCAAATTCGAATCTCAAAATCGTTGGGGATTTACAGAAATTGATTCAGAGAAAACCTAGTGAAAGCAGATTGAAAGAGAGAGTTACACAAAACGACGTAGCTACTCTGCTTTACTCATCTGGTACTACCGGAGCAAGCAAAGGAGTTATTTCATCTCACAAAAACCT</genome_strand>
        <mrna_strand>ATTCTACCGTCGATCCAAAATCCGGCTATTCACCGGCGAATTCAACTTTCTACAGCAAACGTAGACCAATTCCGTTTCCGGCGAATGAATCTATTGATGTAACAACTTTCATTTCTTCACGAGCACATAGCGGGAAAATCGCTTTCATCGATGCTACGACTGGTCGGAAACTCAGTTTCTCCGACGTATGGAACGCCGTTGAGTCGTTAGCTACTAGTTTATCAGTTGATATGAGTATTCGTAAAGGTGATGTTGTTCTTCTCCTTTCTCCTAATTCCATTTTCTTCCCTATTATTTGTCTCGCCGTTATGTCACTAGGAGCTATAATCACTACAACGAATCCACTCAACACGAACAGCGAAATCGCTAAACAGATCAAGGATTCGAATCCTGTTCTCGCTTTTACAATCCCTCAACTACTCCCGAAACTCACCGGATTTAATCTCCCGGTGATTTTAATCGACGGAGTGAATGATTCAAATTCGAATCTCAAAATCGTTGGGGATTTACAGAAATTGATTCAGAGAAAACCTAGTGAAAGCAGATTGAAAGAGAGAGTTACACAAAACGACGTAGCTACTCTGCTTTACTCATCTGGTACTACCGGAGCAAGCAAAGGAGTTATTTCATCTCACAAAAACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E201304" ref_strand="+" ref_description="SGN-E201304 [cLEC-4-E21]">
      <seq>cgaattcaactttctacagcaaacgtagaccaattccgtttccggcgaatgaatctattgatgtaacaactttcatttcttcacgagcacatagcgggaaaatcgctttcatcgatgctacgactggtcggaaactcagtttctccgacgtatggaacgccgttgagtcgttagctactagtttatcagttgatatgagtattcgtaaaggtgatgttggtcttctcctttctcctaattccattttcttccctattatttgtctcgccggtatgtcactaggagctataatcactacaacgaatccactcaacacgaacagcgaaatcgctaaacagatcaaggattcgaatcctgttctcgcttttacaatccctcaactactcccgaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="77945" stop="78937"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78245" g_stop="78637" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E201304" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>393</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201304" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78245" e_stop="78637"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAATTCAACTTTCTACAGCAAACGTAGACCAATTCCGTTTCCGGCGAATGAATCTATTGATGTAACAACTTTCATTTCTTCACGAGCACATAGCGGGAAAATCGCTTTCATCGATGCTACGACTGGTCGGAAACTCAGTTTCTCCGACGTATGGAACGCCGTTGAGTCGTTAGCTACTAGTTTATCAGTTGATATGAGTATTCGTAAAGGTGATGTTGTTCTTCTCCTTTCTCCTAATTCCATTTTCTTCCCTATTATTTGTCTCGCCGTTATGTCACTAGGAGCTATAATCACTACAACGAATCCACTCAACACGAACAGCGAAATCGCTAAACAGATCAAGGATTCGAATCCTGTTCTCGCTTTTACAATCCCTCAACTACTCCCGAAAC</genome_strand>
        <mrna_strand>CGAATTCAACTTTCTACAGCAAACGTAGACCAATTCCGTTTCCGGCGAATGAATCTATTGATGTAACAACTTTCATTTCTTCACGAGCACATAGCGGGAAAATCGCTTTCATCGATGCTACGACTGGTCGGAAACTCAGTTTCTCCGACGTATGGAACGCCGTTGAGTCGTTAGCTACTAGTTTATCAGTTGATATGAGTATTCGTAAAGGTGATGTTGGTCTTCTCCTTTCTCCTAATTCCATTTTCTTCCCTATTATTTGTCTCGCCGGTATGTCACTAGGAGCTATAATCACTACAACGAATCCACTCAACACGAACAGCGAAATCGCTAAACAGATCAAGGATTCGAATCCTGTTCTCGCTTTTACAATCCCTCAACTACTCCCGAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E374574" ref_strand="+" ref_description="SGN-E374574 [TUS-15-H17]">
      <seq>cgttatgtcactaggagctataatcactacaacgaatccactcaacacgaacagcgaaatcgctaaacagatcaaggattcgaatcctgttctcgcttttacaatccctcaactactcccgaaactcaccggatttaatctcccggtgattttaatcgacggagtgaatgattcaaattcgaatctcaaaatcgttggggatttacagaaattgattcagagaaaacctagtgaaagcagattgaaagagagagttacacaaaacgacgtagctactctgctttactcatctggtactaccggagcaagcaaaggagttatttcatctcacaaaaacctaatcgccatggttcaaactatagtcagtcgattcaatctagatgaaggtgtacaaaccttcatttgtactgtacctatgtttcatatttacggattagcagcgtttgcagctgggttattagcatctggatctactgttgttgtattatcaaaattcgaaatggatgaaatgctctcatcgattcacaaatacaaagcaacttctctaccattagtgcctccaattctcgttgcgcttgtgaataacgctgattggattaagaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="78213" stop="79418"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78513" g_stop="79118" g_length="606"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="606" r_length="606" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E374574" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>606</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374574" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78513" e_stop="79118"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTATGTCACTAGGAGCTATAATCACTACAACGAATCCACTCAACACGAACAGCGAAATCGCTAAACAGATCAAGGATTCGAATCCTGTTCTCGCTTTTACAATCCCTCAACTACTCCCGAAACTCACCGGATTTAATCTCCCGGTGATTTTAATCGACGGAGTGAATGATTCAAATTCGAATCTCAAAATCGTTGGGGATTTACAGAAATTGATTCAGAGAAAACCTAGTGAAAGCAGATTGAAAGAGAGAGTTACACAAAACGACGTAGCTACTCTGCTTTACTCATCTGGTACTACCGGAGCAAGCAAAGGAGTTATTTCATCTCACAAAAACCTAATCGCCATGGTTCAAACTATAGTCAGTCGATTCAATCTAGATGAAGGTGTACAAACCTTCATTTGTACTGTACCTATGTTTCATATTTACGGATTAGCAGCGTTTGCAGCTGGGTTATTAGCATCTGGATCTACTGTTGTTGTATTATCAAAATTCGAAATGGATGAAATGCTCTCATCGATTCACAAATACAAAGCAACTTCTCTACCATTAGTGCCTCCAATTCTCGTTGCGCTTGTGAATAACGCTGATTGGATTAAGAAAAA</genome_strand>
        <mrna_strand>CGTTATGTCACTAGGAGCTATAATCACTACAACGAATCCACTCAACACGAACAGCGAAATCGCTAAACAGATCAAGGATTCGAATCCTGTTCTCGCTTTTACAATCCCTCAACTACTCCCGAAACTCACCGGATTTAATCTCCCGGTGATTTTAATCGACGGAGTGAATGATTCAAATTCGAATCTCAAAATCGTTGGGGATTTACAGAAATTGATTCAGAGAAAACCTAGTGAAAGCAGATTGAAAGAGAGAGTTACACAAAACGACGTAGCTACTCTGCTTTACTCATCTGGTACTACCGGAGCAAGCAAAGGAGTTATTTCATCTCACAAAAACCTAATCGCCATGGTTCAAACTATAGTCAGTCGATTCAATCTAGATGAAGGTGTACAAACCTTCATTTGTACTGTACCTATGTTTCATATTTACGGATTAGCAGCGTTTGCAGCTGGGTTATTAGCATCTGGATCTACTGTTGTTGTATTATCAAAATTCGAAATGGATGAAATGCTCTCATCGATTCACAAATACAAAGCAACTTCTCTACCATTAGTGCCTCCAATTCTCGTTGCGCTTGTGAATAACGCTGATTGGATTAAGAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E208512" ref_strand="+" ref_description="SGN-E208512 [cLEC-39-G18]">
      <seq>cgttatgtcactaggagctataatcactacaacgaatccactcaacacgaacagcgaaatcgctaaacagatcaaggattcgaatcctgttctcgcttttacaatccctcaactactcccgaaactcaccggatttaatctcccggtgattttaatcgacggagtgaatgattcaaattcgaatctcaaaatcgttggggatttacagaaattgattcagagaaaacctagtgaaagcagattgaaagagagagttacacaaaacgacgtagctactctgctttactcatctggtactaccggagcaagcaaaggagttatttcatctcacaaaaacctaatcgccatggttcaaactatagtcagtcgattcaatctagatgaaggtgtacaaaccttcatttgtactgtacctatgtttcatatttacggattagcagcgtttgcagctgggttattagcatctggatctactgttgttgtattatcaaaattcgaaatggatgaaatgctctcatcgattcacaaatacaaagcaacttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="78213" stop="79357"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78513" g_stop="79057" g_length="545"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="545" r_length="545" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E208512" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>545</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78513" e_stop="79057"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTATGTCACTAGGAGCTATAATCACTACAACGAATCCACTCAACACGAACAGCGAAATCGCTAAACAGATCAAGGATTCGAATCCTGTTCTCGCTTTTACAATCCCTCAACTACTCCCGAAACTCACCGGATTTAATCTCCCGGTGATTTTAATCGACGGAGTGAATGATTCAAATTCGAATCTCAAAATCGTTGGGGATTTACAGAAATTGATTCAGAGAAAACCTAGTGAAAGCAGATTGAAAGAGAGAGTTACACAAAACGACGTAGCTACTCTGCTTTACTCATCTGGTACTACCGGAGCAAGCAAAGGAGTTATTTCATCTCACAAAAACCTAATCGCCATGGTTCAAACTATAGTCAGTCGATTCAATCTAGATGAAGGTGTACAAACCTTCATTTGTACTGTACCTATGTTTCATATTTACGGATTAGCAGCGTTTGCAGCTGGGTTATTAGCATCTGGATCTACTGTTGTTGTATTATCAAAATTCGAAATGGATGAAATGCTCTCATCGATTCACAAATACAAAGCAACTTCTC</genome_strand>
        <mrna_strand>CGTTATGTCACTAGGAGCTATAATCACTACAACGAATCCACTCAACACGAACAGCGAAATCGCTAAACAGATCAAGGATTCGAATCCTGTTCTCGCTTTTACAATCCCTCAACTACTCCCGAAACTCACCGGATTTAATCTCCCGGTGATTTTAATCGACGGAGTGAATGATTCAAATTCGAATCTCAAAATCGTTGGGGATTTACAGAAATTGATTCAGAGAAAACCTAGTGAAAGCAGATTGAAAGAGAGAGTTACACAAAACGACGTAGCTACTCTGCTTTACTCATCTGGTACTACCGGAGCAAGCAAAGGAGTTATTTCATCTCACAAAAACCTAATCGCCATGGTTCAAACTATAGTCAGTCGATTCAATCTAGATGAAGGTGTACAAACCTTCATTTGTACTGTACCTATGTTTCATATTTACGGATTAGCAGCGTTTGCAGCTGGGTTATTAGCATCTGGATCTACTGTTGTTGTATTATCAAAATTCGAAATGGATGAAATGCTCTCATCGATTCACAAATACAAAGCAACTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E204448" ref_strand="+" ref_description="SGN-E204448 [cLEC-13-P18]">
      <seq>cgttatgtcactaggagctataatcactacaacgaatccactcaacacgaacagcgaaatcgctaaacagatcaaggattcgaatcctgttctcgcttttacaatccctcaactactcccgaaactcaccggatttaatctcccggtgattttaatcgacggagtgaatgattcaaattcgaatctcaaaatcgttggggatttacagaaattgattcagagaaaacctagtgaaagcagattgaaagagagagttacacaaaacgacgtagctactctgctttactcatctggtactaccggagcaagcaaaggagttatttcatctcacaaaaacctaatcgccatggttcaaactatagtcagtcgattcaatctagatgaaggtgtacaaaccttcatttgtactgtacctatgtttcatatttacggattagcagcgtttgcagctgggttattagcatctggatctactggtgttgtattatcaaaattcgaaatggatgaaatgctctcatcgattcacaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="78213" stop="79342"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78513" g_stop="79042" g_length="530"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="530" r_length="530" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E204448" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>530</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78513" e_stop="79042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTATGTCACTAGGAGCTATAATCACTACAACGAATCCACTCAACACGAACAGCGAAATCGCTAAACAGATCAAGGATTCGAATCCTGTTCTCGCTTTTACAATCCCTCAACTACTCCCGAAACTCACCGGATTTAATCTCCCGGTGATTTTAATCGACGGAGTGAATGATTCAAATTCGAATCTCAAAATCGTTGGGGATTTACAGAAATTGATTCAGAGAAAACCTAGTGAAAGCAGATTGAAAGAGAGAGTTACACAAAACGACGTAGCTACTCTGCTTTACTCATCTGGTACTACCGGAGCAAGCAAAGGAGTTATTTCATCTCACAAAAACCTAATCGCCATGGTTCAAACTATAGTCAGTCGATTCAATCTAGATGAAGGTGTACAAACCTTCATTTGTACTGTACCTATGTTTCATATTTACGGATTAGCAGCGTTTGCAGCTGGGTTATTAGCATCTGGATCTACTGTTGTTGTATTATCAAAATTCGAAATGGATGAAATGCTCTCATCGATTCACAAAT</genome_strand>
        <mrna_strand>CGTTATGTCACTAGGAGCTATAATCACTACAACGAATCCACTCAACACGAACAGCGAAATCGCTAAACAGATCAAGGATTCGAATCCTGTTCTCGCTTTTACAATCCCTCAACTACTCCCGAAACTCACCGGATTTAATCTCCCGGTGATTTTAATCGACGGAGTGAATGATTCAAATTCGAATCTCAAAATCGTTGGGGATTTACAGAAATTGATTCAGAGAAAACCTAGTGAAAGCAGATTGAAAGAGAGAGTTACACAAAACGACGTAGCTACTCTGCTTTACTCATCTGGTACTACCGGAGCAAGCAAAGGAGTTATTTCATCTCACAAAAACCTAATCGCCATGGTTCAAACTATAGTCAGTCGATTCAATCTAGATGAAGGTGTACAAACCTTCATTTGTACTGTACCTATGTTTCATATTTACGGATTAGCAGCGTTTGCAGCTGGGTTATTAGCATCTGGATCTACTGGTGTTGTATTATCAAAATTCGAAATGGATGAAATGCTCTCATCGATTCACAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E208567" ref_strand="+" ref_description="SGN-E208567 [cLEC-39-F6]">
      <seq>cgttatgtcactaggagctataatcactacaacgaatccactcaacacgaacagcgaaatcgctaaacagatcaaggattcgaatcctgttctcgcttttacaatccctcaactactcccgaaactcaccggatttaatctcccggtgattttaatcgacggagtgaatgattcaaattcgaatctcaaaatcgttggggatttacagaaattgattcagagaaaacctagtgaaagcagattgaaagagagagttacacaaaacgacgtagctactctgctttactcatctggtactaccggagcaagcaaaggagttatttcatctcacaaaaacctaatcgccatggttcaaactatagtcagtcgattcaatctagatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="78213" stop="79196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78513" g_stop="78896" g_length="384"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="384" r_length="384" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E208567" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>384</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208567" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78513" e_stop="78896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTTATGTCACTAGGAGCTATAATCACTACAACGAATCCACTCAACACGAACAGCGAAATCGCTAAACAGATCAAGGATTCGAATCCTGTTCTCGCTTTTACAATCCCTCAACTACTCCCGAAACTCACCGGATTTAATCTCCCGGTGATTTTAATCGACGGAGTGAATGATTCAAATTCGAATCTCAAAATCGTTGGGGATTTACAGAAATTGATTCAGAGAAAACCTAGTGAAAGCAGATTGAAAGAGAGAGTTACACAAAACGACGTAGCTACTCTGCTTTACTCATCTGGTACTACCGGAGCAAGCAAAGGAGTTATTTCATCTCACAAAAACCTAATCGCCATGGTTCAAACTATAGTCAGTCGATTCAATCTAGATGA</genome_strand>
        <mrna_strand>CGTTATGTCACTAGGAGCTATAATCACTACAACGAATCCACTCAACACGAACAGCGAAATCGCTAAACAGATCAAGGATTCGAATCCTGTTCTCGCTTTTACAATCCCTCAACTACTCCCGAAACTCACCGGATTTAATCTCCCGGTGATTTTAATCGACGGAGTGAATGATTCAAATTCGAATCTCAAAATCGTTGGGGATTTACAGAAATTGATTCAGAGAAAACCTAGTGAAAGCAGATTGAAAGAGAGAGTTACACAAAACGACGTAGCTACTCTGCTTTACTCATCTGGTACTACCGGAGCAAGCAAAGGAGTTATTTCATCTCACAAAAACCTAATCGCCATGGTTCAAACTATAGTCAGTCGATTCAATCTAGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E251410" ref_strand="+" ref_description="SGN-E251410 [cLEG-9-M19]">
      <seq>tacaacgaatccactcaacacgaacagcgaaatcgctaaacagatcaaggattcgggtcctgttctcgcttttacaatccctcaactactcccgaaactcaccggatttaatctcccggtgattttaatcgacggagtgaatgattcaaattcgaatctcaaaatcgttggggatttacagaaattgattcagagaaaacctagtgaaagcagattgaaagagagagttacacaaaacgacgtagctactctgctttactcatctggtactaccggagcaagcaaaggagttatttcatctcacaaaaacctaatcgccatggttcaaactatagtcagtcgattcaatctagatgaaggtgtacaaaccttcatttgtactgtacctatgtttcatatttacggattagcagcgtttgcagctggggtattagcatctggatcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="78240" stop="79285"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78540" g_stop="78985" g_length="446"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="446" r_length="446" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E251410" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78540" e_stop="78985"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAACGAATCCACTCAACACGAACAGCGAAATCGCTAAACAGATCAAGGATTCGAATCCTGTTCTCGCTTTTACAATCCCTCAACTACTCCCGAAACTCACCGGATTTAATCTCCCGGTGATTTTAATCGACGGAGTGAATGATTCAAATTCGAATCTCAAAATCGTTGGGGATTTACAGAAATTGATTCAGAGAAAACCTAGTGAAAGCAGATTGAAAGAGAGAGTTACACAAAACGACGTAGCTACTCTGCTTTACTCATCTGGTACTACCGGAGCAAGCAAAGGAGTTATTTCATCTCACAAAAACCTAATCGCCATGGTTCAAACTATAGTCAGTCGATTCAATCTAGATGAAGGTGTACAAACCTTCATTTGTACTGTACCTATGTTTCATATTTACGGATTAGCAGCGTTTGCAGCTGGGTTATTAGCATCTGGATCTA</genome_strand>
        <mrna_strand>TACAACGAATCCACTCAACACGAACAGCGAAATCGCTAAACAGATCAAGGATTCGGGTCCTGTTCTCGCTTTTACAATCCCTCAACTACTCCCGAAACTCACCGGATTTAATCTCCCGGTGATTTTAATCGACGGAGTGAATGATTCAAATTCGAATCTCAAAATCGTTGGGGATTTACAGAAATTGATTCAGAGAAAACCTAGTGAAAGCAGATTGAAAGAGAGAGTTACACAAAACGACGTAGCTACTCTGCTTTACTCATCTGGTACTACCGGAGCAAGCAAAGGAGTTATTTCATCTCACAAAAACCTAATCGCCATGGTTCAAACTATAGTCAGTCGATTCAATCTAGATGAAGGTGTACAAACCTTCATTTGTACTGTACCTATGTTTCATATTTACGGATTAGCAGCGTTTGCAGCTGGGGTATTAGCATCTGGATCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E310173" ref_strand="+" ref_description="SGN-E310173 [cLEZ-8-I12]">
      <seq>aaactcaccggatttaatctcccggtgattttaatcgacggagtgaatgattcaaattcgaatctcaaaatcgttggggatttacagaaattgattcagagaaaacctagtgaaagcagattgaaagagagagttacacaaaacgacgtagctactctgctttactcatctggtactaccggagcaagcaaaggagttatttcatctcacaaaaacctaatcgccatggttcaaactatagtcagtcgattcaatctagatgaaggtgtacaaaccttcatttgtactgtacctatgtttcatatttacggattagcagcgtttgcagctgggttattagcatctggatctactgttgttgtattatcaaaattcgaaatggatgaaatgctctcatcgattcacaaatacaaagcaacttctctaccattagtgcctccaattctcgttgcgcttgtgaataacgctgattggattaagaaaaaatatgatttaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="78334" stop="79430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78634" g_stop="79130" g_length="497"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="497" r_length="497" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E310173" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>497</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310173" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78634" e_stop="79130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTCACCGGATTTAATCTCCCGGTGATTTTAATCGACGGAGTGAATGATTCAAATTCGAATCTCAAAATCGTTGGGGATTTACAGAAATTGATTCAGAGAAAACCTAGTGAAAGCAGATTGAAAGAGAGAGTTACACAAAACGACGTAGCTACTCTGCTTTACTCATCTGGTACTACCGGAGCAAGCAAAGGAGTTATTTCATCTCACAAAAACCTAATCGCCATGGTTCAAACTATAGTCAGTCGATTCAATCTAGATGAAGGTGTACAAACCTTCATTTGTACTGTACCTATGTTTCATATTTACGGATTAGCAGCGTTTGCAGCTGGGTTATTAGCATCTGGATCTACTGTTGTTGTATTATCAAAATTCGAAATGGATGAAATGCTCTCATCGATTCACAAATACAAAGCAACTTCTCTACCATTAGTGCCTCCAATTCTCGTTGCGCTTGTGAATAACGCTGATTGGATTAAGAAAAAATATGATTTAAG</genome_strand>
        <mrna_strand>AAACTCACCGGATTTAATCTCCCGGTGATTTTAATCGACGGAGTGAATGATTCAAATTCGAATCTCAAAATCGTTGGGGATTTACAGAAATTGATTCAGAGAAAACCTAGTGAAAGCAGATTGAAAGAGAGAGTTACACAAAACGACGTAGCTACTCTGCTTTACTCATCTGGTACTACCGGAGCAAGCAAAGGAGTTATTTCATCTCACAAAAACCTAATCGCCATGGTTCAAACTATAGTCAGTCGATTCAATCTAGATGAAGGTGTACAAACCTTCATTTGTACTGTACCTATGTTTCATATTTACGGATTAGCAGCGTTTGCAGCTGGGTTATTAGCATCTGGATCTACTGTTGTTGTATTATCAAAATTCGAAATGGATGAAATGCTCTCATCGATTCACAAATACAAAGCAACTTCTCTACCATTAGTGCCTCCAATTCTCGTTGCGCTTGTGAATAACGCTGATTGGATTAAGAAAAAATATGATTTAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E310997" ref_strand="+" ref_description="SGN-E310997 [cLEZ-17-I23]">
      <seq>ttacacaaaacgacgtagctactctgctttactcatctggtactaccggagcaagcaaaggagttatttcatctcacaaaaacctaatcgccatggttcaaactatagtcagtcgattcaatctagatgaaggtgtacaaaccttcatttgtactgtacctatgtttcatatttacggattagcagcgtttgcagctgggttattagcatctggatctactgttgttgtattatcaaaattcgaaatggatgaaatgctctcatcgattcacaaatacaaagcaacttctctaccattagtgcctccaattctcgttgcgcttgtgaataacgctgattggattaagaaaaaatatgatttaagcagcttggagagtgttctctccggcggtgctccgttgagtaaggaagtgattgagggatttgtagagaagtatccatctgtgaggattttgcaagggtatgggttgacag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="78467" stop="79540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78767" g_stop="79240" g_length="474"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="474" r_length="474" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E310997" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E310997" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78767" e_stop="79240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTACACAAAACGACGTAGCTACTCTGCTTTACTCATCTGGTACTACCGGAGCAAGCAAAGGAGTTATTTCATCTCACAAAAACCTAATCGCCATGGTTCAAACTATAGTCAGTCGATTCAATCTAGATGAAGGTGTACAAACCTTCATTTGTACTGTACCTATGTTTCATATTTACGGATTAGCAGCGTTTGCAGCTGGGTTATTAGCATCTGGATCTACTGTTGTTGTATTATCAAAATTCGAAATGGATGAAATGCTCTCATCGATTCACAAATACAAAGCAACTTCTCTACCATTAGTGCCTCCAATTCTCGTTGCGCTTGTGAATAACGCTGATTGGATTAAGAAAAAATATGATTTAAGCAGCTTGGAGAGTGTTCTCTCCGGCGGTGCTCCGTTGAGTAAGGAAGTGATTGAGGGATTTGTAGAGAAGTATCCATCTGTGAGGATTTTGCAAGGGTATGGGTTGACAG</genome_strand>
        <mrna_strand>TTACACAAAACGACGTAGCTACTCTGCTTTACTCATCTGGTACTACCGGAGCAAGCAAAGGAGTTATTTCATCTCACAAAAACCTAATCGCCATGGTTCAAACTATAGTCAGTCGATTCAATCTAGATGAAGGTGTACAAACCTTCATTTGTACTGTACCTATGTTTCATATTTACGGATTAGCAGCGTTTGCAGCTGGGTTATTAGCATCTGGATCTACTGTTGTTGTATTATCAAAATTCGAAATGGATGAAATGCTCTCATCGATTCACAAATACAAAGCAACTTCTCTACCATTAGTGCCTCCAATTCTCGTTGCGCTTGTGAATAACGCTGATTGGATTAAGAAAAAATATGATTTAAGCAGCTTGGAGAGTGTTCTCTCCGGCGGTGCTCCGTTGAGTAAGGAAGTGATTGAGGGATTTGTAGAGAAGTATCCATCTGTGAGGATTTTGCAAGGGTATGGGTTGACAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E713814" ref_strand="+" ref_description="SGN-E713814 [FB09CH11]">
      <seq>tgaaatgctctcatcgtattcacaaatacaaagcaacttctctaccattagtgcctccaattctcgttgcgcttgtgaataacgctgattggattaagaaaaaatatgatttaagcagcttggagagtgttctctccggcggtgctccgttgagtaaggaagtgattgagggatttgtagagaagtatccatctgtgaggattttgcaagggtatgggttgacagagtcgaccggaatcggggcgtcgacggattctttggaggagagccggagatatggaacggcgggaatgttgtcaccgagcatggaagggaaaattgttgatccggagagtggaaaagctttgccggtgaataagaccggtgagctttggctaagaggacctaccattatgaaaggttatttcagtaatgaagaagctactgcttccactctagactctgatggatggttaagaactggagatctatgctatatagatgaagatggtttcatttttgtggttgatagattaaaggagctcatcaaatataaaggttatcaggttcctccagcagagttagaggctttattgctcactcatccagaaatttctgatgctgctgttataccgtttccggataaggaggtcggacagtttcctatggcatatgtagtacgtaaaactgggagtactatatcagagagtgcagtcatggatttcattgcgaaacaggttgctccatataaaagaattcggagagttgcatttgtggcttccataccgaagaatccttctggggaaatactcaggaaggatttgataaagctagcaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="78717" stop="82120"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79017" g_stop="79414" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79415" i_stop="80752" i_length="1338">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80753" g_stop="80898" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="545" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80899" i_stop="81327" i_length="429">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81328" g_stop="81395" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="546" r_stop="613" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81396" i_stop="81487" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81488" g_stop="81590" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="614" r_stop="716" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="81591" i_stop="81718" i_length="128">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="81719" g_stop="81820" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="717" r_stop="818" r_length="102" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E713814" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>817</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E713814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79017" e_stop="79414"/>
          <exon e_start="80753" e_stop="80898"/>
          <exon e_start="81328" e_stop="81395"/>
          <exon e_start="81488" e_stop="81590"/>
          <exon e_start="81719" e_stop="81820"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAATGCTCTCATCG-ATTCACAAATACAAAGCAACTTCTCTACCATTAGTGCCTCCAATTCTCGTTGCGCTTGTGAATAACGCTGATTGGATTAAGAAAAAATATGATTTAAGCAGCTTGGAGAGTGTTCTCTCCGGCGGTGCTCCGTTGAGTAAGGAAGTGATTGAGGGATTTGTAGAGAAGTATCCATCTGTGAGGATTTTGCAAGGGTATGGGTTGACAGAGTCGACCGGAATCGGGGCGTCGACGGATTCTTTGGAGGAGAGCCGGAGATATGGAACGGCGGGAATGTTGTCACCGAGCATGGAAGGGAAAATTGTTGATCCGGAGAGTGGAAAAGCTTTGCCGGTGAATAAGACCGGTGAGCTTTGGCTAAGAGGACCTACCATTATGAAAGGTATGACTTTTTACAAGCATACTGTATAAACATGTTATTTAACTTGTCGATACACATATCTCAAGTGACATGATAATATCGTGTAGAAGGTAAATTGCTATAAAAAATATGTGTATCTAATTGTTCAACTTTACATAATATCCTTGTTAATACATAAGACCGATTAACACGTTCAAGATATTATGATTTCTTTTGGACTTGTGTTTTGTTGTTAGTAATGATTTGAGTTACATATGGTACATGTTTGGACTAGACGGAAATAATAAAGAAGGAATTGAAAGAGATGGGCAAATATTTTATTTTTTTATTTTTATAACAGTGATGTCAGGGCTCGTTTGCATACATATAACTCATTTTATGGGGTTAGTTGTTGTTTTTCGCACCTCCGGATTAACTCTATTCACCAAAACATGGATAAATTGAAAGAAAATGTCTAATATTTTTTTGTTTTAGACTTTAAATTTGAGATATCATGGTTCTTGATTTACTCGAGCCGCTCTTTCCTTCTTGATGTGTGTCAAAAATGTTTTAACTTGAACTTCAACATGCATGTTTTTTAGCAATAAAGATAATCATGCTATGTAAGCTAAATAAAAAATTATGCAAGGTTATGATTATAAGTTTGAAATCTCTTTTTTCTTTTTTTTTGAATTTTATGCTCAATAATGCACTATCATATAAAATGAAAACTGTTGGGGTATTTTCCCTTTTTAAAAGTATCATTTTCAATTTACATGTCATTTAATTTTGATGAAATGCCTCAACACTCCTTGCTTTGAAAAAATCTTCTTCTCTGGCTAGTGAGCTCTTGTTCCTGTCCATACACTATGAAAGTGTAATGATTAATATAAAACTTGCATTATGTTTTGTCTGCCCCACTATTTACTCATAGTGCTTTGATGGTCCCATAAACTAATGGGGGACTGAAGAAATATTCAGCACTTTCTTCATTTCTTGTTTTTTTTACACCAATTGAAGTAGGGTCTTTCGGAAACTGTATATCTTCAAGAGATAGGGATAACGACTAGGTATTTGGAAATTAGTTTGATGTTTTGACCCAAGCGAGCCTTAGAGCAATGATTAAGTTATCTTGTATAATCTATAGATCAGGGAATCTTGCCACGGAAGTAATGCTTGCGGTAGACAATCTACATCACATACCTAGTGGTTGGCCCTTAATTCCCCAAACTCTGCTAAGCGAGATGCTTTGTGCACCTGGTTGCTCTTTTCTTTTCGTATCTATGCTTAGTTCATCGATAATTCACAAGTTTGTGAGAGTGATATCCATTGACCTATTATTATAGCTTTCATTCATGATTATTTTCCTGTGAAAAACAGGTTATTTCAGTAATGAAGAAGCTACTGCTTCCACTCTAGACTCTGATGGATGGTTAAGAACTGGAGATCTATGCTATATAGATGAAGATGGTTTCATTTTTGTGGTTGATAGATTAAAGGAGCTCATCAAATATAAAGGTTATCAGGTAAATGAAAACAAACTCTCTCCTTCTTCCTATATATAGTTGGCTTTTCGCGAAATCCCCTGAAACATATTTTCCACATCAATGTTATCTAAGGCGAAAAATGCAAAAAAGCTCCAAAGTCCATTGGAGGCTAGAAGTAAAGCACAAAAAATCTTAAAACAGAATACAAATATGTATATGTAGTATTTGAATGAACTGAAAAAAAATTGGTTAAGTGAAATATCAACTGTTACAACATTTCACGATTATGCTTATTGGTAAGGAAAAGTACGTATTTAAGTCTTGATGACGACATTGAAGTGGATAAGTGAGGTGAAAGATTCAACATGTCTTGCTCCTCGCTTCAGAGCTTAAGTGCGCTTTATACATGATCTGACACTTTTCTTTATAGTTAAAACTTACGAGACAACTTTTCGTATCATCTTCTAGGTTCCTCCAGCAGAGTTAGAGGCTTTATTGCTCACTCATCCAGAAATTTCTGATGCTGCTGTTATACCGTGAGTGTTACTTCAAATCGCGCTTCCTCTTATGCTTTACTGTTTCAGTATGAATTTCTGATGATCGTTTCATTGATCTCGTTGTGTTTAAGGTTTCCGGATAAGGAGGTCGGACAGTTTCCTATGGCATATGTAGTACGTAAAACTGGGAGTACTATATCAGAGAGTGCAGTCATGGATTTCATTGCGAAACAGGTAATTTTAGAATAGTCACATTCTACTAGATCAATATATATAATAAGAACTCAGACTTGAAACTGGTTTTCGATTTCTGGTCATAGAATATGTAGTGATGCTCAAATTTATCGCGTTTGTTTGTGTAGGTTGCTCCATATAAAAGAATTCGGAGAGTTGCATTTGTGGCTTCCATACCGAAGAATCCTTCTGGGAAAATACTCAGGAAGGATTTGATAAAGCTAGCAACA</genome_strand>
        <mrna_strand>TGAAATGCTCTCATCGTATTCACAAATACAAAGCAACTTCTCTACCATTAGTGCCTCCAATTCTCGTTGCGCTTGTGAATAACGCTGATTGGATTAAGAAAAAATATGATTTAAGCAGCTTGGAGAGTGTTCTCTCCGGCGGTGCTCCGTTGAGTAAGGAAGTGATTGAGGGATTTGTAGAGAAGTATCCATCTGTGAGGATTTTGCAAGGGTATGGGTTGACAGAGTCGACCGGAATCGGGGCGTCGACGGATTCTTTGGAGGAGAGCCGGAGATATGGAACGGCGGGAATGTTGTCACCGAGCATGGAAGGGAAAATTGTTGATCCGGAGAGTGGAAAAGCTTTGCCGGTGAATAAGACCGGTGAGCTTTGGCTAAGAGGACCTACCATTATGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTCAGTAATGAAGAAGCTACTGCTTCCACTCTAGACTCTGATGGATGGTTAAGAACTGGAGATCTATGCTATATAGATGAAGATGGTTTCATTTTTGTGGTTGATAGATTAAAGGAGCTCATCAAATATAAAGGTTATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTCCAGCAGAGTTAGAGGCTTTATTGCTCACTCATCCAGAAATTTCTGATGCTGCTGTTATACC............................................................................................GTTTCCGGATAAGGAGGTCGGACAGTTTCCTATGGCATATGTAGTACGTAAAACTGGGAGTACTATATCAGAGAGTGCAGTCATGGATTTCATTGCGAAACAG................................................................................................................................GTTGCTCCATATAAAAGAATTCGGAGAGTTGCATTTGTGGCTTCCATACCGAAGAATCCTTCTGGGGAAATACTCAGGAAGGATTTGATAAAGCTAGCAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E728684" ref_strand="+" ref_description="SGN-E728684 [LA18CE05]">
      <seq>attcacaaatacaaagcaacttctgtaccattagtgcctccaattctcgttgcgcttgtgaataacgctgattggattaagaaaaaatatgatttaagcagcttggagagtgttctctccggcggtgctccgttgagtaaggaagtgattgagggatttgtagagaagtatccatctgtgaggattttgcaagggtatgggttgacagagtcgaccggaatcggggcgtcgacggattctttggaggagagccggagatatggaacggcgggaatgttgtcaccgagcatggaagggaaaattgttgatccggagagtggaaaagctttgccggtgaataagaccggtgagctttggctaagaggacctaccattatgaaaggttatttcagtaatgaagaagctactgcttccactctagactctgatggatggttaagaactggagatctatgctatatagatgaagatggtttcatttttgtggttgatagattaaaggagctcatcaaatataaaggttatcaggttcctccagcagagttagaggctttattgctcactcatccagaaatttctgatgctgctgttataccgtttccggataaggaggtcggacagtttcctatggcatatgtagtacgtaaaactggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="78733" stop="81845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79033" g_stop="79414" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79415" i_stop="80752" i_length="1338">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80753" g_stop="80898" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="528" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80899" i_stop="81327" i_length="429">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81328" g_stop="81395" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="596" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81396" i_stop="81487" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81488" g_stop="81545" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="597" r_stop="654" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E728684" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728684" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79033" e_stop="79414"/>
          <exon e_start="80753" e_stop="80898"/>
          <exon e_start="81328" e_stop="81395"/>
          <exon e_start="81488" e_stop="81545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCACAAATACAAAGCAACTTCTCTACCATTAGTGCCTCCAATTCTCGTTGCGCTTGTGAATAACGCTGATTGGATTAAGAAAAAATATGATTTAAGCAGCTTGGAGAGTGTTCTCTCCGGCGGTGCTCCGTTGAGTAAGGAAGTGATTGAGGGATTTGTAGAGAAGTATCCATCTGTGAGGATTTTGCAAGGGTATGGGTTGACAGAGTCGACCGGAATCGGGGCGTCGACGGATTCTTTGGAGGAGAGCCGGAGATATGGAACGGCGGGAATGTTGTCACCGAGCATGGAAGGGAAAATTGTTGATCCGGAGAGTGGAAAAGCTTTGCCGGTGAATAAGACCGGTGAGCTTTGGCTAAGAGGACCTACCATTATGAAAGGTATGACTTTTTACAAGCATACTGTATAAACATGTTATTTAACTTGTCGATACACATATCTCAAGTGACATGATAATATCGTGTAGAAGGTAAATTGCTATAAAAAATATGTGTATCTAATTGTTCAACTTTACATAATATCCTTGTTAATACATAAGACCGATTAACACGTTCAAGATATTATGATTTCTTTTGGACTTGTGTTTTGTTGTTAGTAATGATTTGAGTTACATATGGTACATGTTTGGACTAGACGGAAATAATAAAGAAGGAATTGAAAGAGATGGGCAAATATTTTATTTTTTTATTTTTATAACAGTGATGTCAGGGCTCGTTTGCATACATATAACTCATTTTATGGGGTTAGTTGTTGTTTTTCGCACCTCCGGATTAACTCTATTCACCAAAACATGGATAAATTGAAAGAAAATGTCTAATATTTTTTTGTTTTAGACTTTAAATTTGAGATATCATGGTTCTTGATTTACTCGAGCCGCTCTTTCCTTCTTGATGTGTGTCAAAAATGTTTTAACTTGAACTTCAACATGCATGTTTTTTAGCAATAAAGATAATCATGCTATGTAAGCTAAATAAAAAATTATGCAAGGTTATGATTATAAGTTTGAAATCTCTTTTTTCTTTTTTTTTGAATTTTATGCTCAATAATGCACTATCATATAAAATGAAAACTGTTGGGGTATTTTCCCTTTTTAAAAGTATCATTTTCAATTTACATGTCATTTAATTTTGATGAAATGCCTCAACACTCCTTGCTTTGAAAAAATCTTCTTCTCTGGCTAGTGAGCTCTTGTTCCTGTCCATACACTATGAAAGTGTAATGATTAATATAAAACTTGCATTATGTTTTGTCTGCCCCACTATTTACTCATAGTGCTTTGATGGTCCCATAAACTAATGGGGGACTGAAGAAATATTCAGCACTTTCTTCATTTCTTGTTTTTTTTACACCAATTGAAGTAGGGTCTTTCGGAAACTGTATATCTTCAAGAGATAGGGATAACGACTAGGTATTTGGAAATTAGTTTGATGTTTTGACCCAAGCGAGCCTTAGAGCAATGATTAAGTTATCTTGTATAATCTATAGATCAGGGAATCTTGCCACGGAAGTAATGCTTGCGGTAGACAATCTACATCACATACCTAGTGGTTGGCCCTTAATTCCCCAAACTCTGCTAAGCGAGATGCTTTGTGCACCTGGTTGCTCTTTTCTTTTCGTATCTATGCTTAGTTCATCGATAATTCACAAGTTTGTGAGAGTGATATCCATTGACCTATTATTATAGCTTTCATTCATGATTATTTTCCTGTGAAAAACAGGTTATTTCAGTAATGAAGAAGCTACTGCTTCCACTCTAGACTCTGATGGATGGTTAAGAACTGGAGATCTATGCTATATAGATGAAGATGGTTTCATTTTTGTGGTTGATAGATTAAAGGAGCTCATCAAATATAAAGGTTATCAGGTAAATGAAAACAAACTCTCTCCTTCTTCCTATATATAGTTGGCTTTTCGCGAAATCCCCTGAAACATATTTTCCACATCAATGTTATCTAAGGCGAAAAATGCAAAAAAGCTCCAAAGTCCATTGGAGGCTAGAAGTAAAGCACAAAAAATCTTAAAACAGAATACAAATATGTATATGTAGTATTTGAATGAACTGAAAAAAAATTGGTTAAGTGAAATATCAACTGTTACAACATTTCACGATTATGCTTATTGGTAAGGAAAAGTACGTATTTAAGTCTTGATGACGACATTGAAGTGGATAAGTGAGGTGAAAGATTCAACATGTCTTGCTCCTCGCTTCAGAGCTTAAGTGCGCTTTATACATGATCTGACACTTTTCTTTATAGTTAAAACTTACGAGACAACTTTTCGTATCATCTTCTAGGTTCCTCCAGCAGAGTTAGAGGCTTTATTGCTCACTCATCCAGAAATTTCTGATGCTGCTGTTATACCGTGAGTGTTACTTCAAATCGCGCTTCCTCTTATGCTTTACTGTTTCAGTATGAATTTCTGATGATCGTTTCATTGATCTCGTTGTGTTTAAGGTTTCCGGATAAGGAGGTCGGACAGTTTCCTATGGCATATGTAGTACGTAAAACTGGG</genome_strand>
        <mrna_strand>ATTCACAAATACAAAGCAACTTCTGTACCATTAGTGCCTCCAATTCTCGTTGCGCTTGTGAATAACGCTGATTGGATTAAGAAAAAATATGATTTAAGCAGCTTGGAGAGTGTTCTCTCCGGCGGTGCTCCGTTGAGTAAGGAAGTGATTGAGGGATTTGTAGAGAAGTATCCATCTGTGAGGATTTTGCAAGGGTATGGGTTGACAGAGTCGACCGGAATCGGGGCGTCGACGGATTCTTTGGAGGAGAGCCGGAGATATGGAACGGCGGGAATGTTGTCACCGAGCATGGAAGGGAAAATTGTTGATCCGGAGAGTGGAAAAGCTTTGCCGGTGAATAAGACCGGTGAGCTTTGGCTAAGAGGACCTACCATTATGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTCAGTAATGAAGAAGCTACTGCTTCCACTCTAGACTCTGATGGATGGTTAAGAACTGGAGATCTATGCTATATAGATGAAGATGGTTTCATTTTTGTGGTTGATAGATTAAAGGAGCTCATCAAATATAAAGGTTATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTCCAGCAGAGTTAGAGGCTTTATTGCTCACTCATCCAGAAATTTCTGATGCTGCTGTTATACC............................................................................................GTTTCCGGATAAGGAGGTCGGACAGTTTCCTATGGCATATGTAGTACGTAAAACTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E728723" ref_strand="+" ref_description="SGN-E728723 [LA18DA04]">
      <seq>gttctcaaatacaaagcaacttctctaccattagtgcctccaattctcgttgcgcttgtgaataacgctgattggattaggaaaaaatatgatttaagcagcttggagagtgttctctccggcggtgctccgttgagtaaggaagtgattgagggatttgtagagaagtatccatctgtgaggattttgcaagggtatgggttgacagagtcgaccggaatcggggcgtcgacggattctttggaggagagccggagatatggaacggcgggaatgttgtcaccgagcatggaagggaaaattgttgagccggagagtggaaaagctttgccggtgaataagaccggtgagctttggctaagaggacctaccattatgaaaggttatttcagtaatgaagaagctactgcttccactctagactctgatggatggttaagaactggagatctatgctatatagatgaagatggtttcatttttgtggttgatagattaaaggagctcatcaaatataaaggttatcaggttcctccagcagagttagaggctttattgctcactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="78734" stop="81665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="79033" g_stop="79414" g_length="382"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="382" r_length="382" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79415" i_stop="80752" i_length="1338">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80753" g_stop="80898" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="528" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80899" i_stop="81327" i_length="429">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81328" g_stop="81365" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="566" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E728723" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E728723" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="79033" e_stop="79414"/>
          <exon e_start="80753" e_stop="80898"/>
          <exon e_start="81328" e_stop="81365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCACAAATACAAAGCAACTTCTCTACCATTAGTGCCTCCAATTCTCGTTGCGCTTGTGAATAACGCTGATTGGATTAAGAAAAAATATGATTTAAGCAGCTTGGAGAGTGTTCTCTCCGGCGGTGCTCCGTTGAGTAAGGAAGTGATTGAGGGATTTGTAGAGAAGTATCCATCTGTGAGGATTTTGCAAGGGTATGGGTTGACAGAGTCGACCGGAATCGGGGCGTCGACGGATTCTTTGGAGGAGAGCCGGAGATATGGAACGGCGGGAATGTTGTCACCGAGCATGGAAGGGAAAATTGTTGATCCGGAGAGTGGAAAAGCTTTGCCGGTGAATAAGACCGGTGAGCTTTGGCTAAGAGGACCTACCATTATGAAAGGTATGACTTTTTACAAGCATACTGTATAAACATGTTATTTAACTTGTCGATACACATATCTCAAGTGACATGATAATATCGTGTAGAAGGTAAATTGCTATAAAAAATATGTGTATCTAATTGTTCAACTTTACATAATATCCTTGTTAATACATAAGACCGATTAACACGTTCAAGATATTATGATTTCTTTTGGACTTGTGTTTTGTTGTTAGTAATGATTTGAGTTACATATGGTACATGTTTGGACTAGACGGAAATAATAAAGAAGGAATTGAAAGAGATGGGCAAATATTTTATTTTTTTATTTTTATAACAGTGATGTCAGGGCTCGTTTGCATACATATAACTCATTTTATGGGGTTAGTTGTTGTTTTTCGCACCTCCGGATTAACTCTATTCACCAAAACATGGATAAATTGAAAGAAAATGTCTAATATTTTTTTGTTTTAGACTTTAAATTTGAGATATCATGGTTCTTGATTTACTCGAGCCGCTCTTTCCTTCTTGATGTGTGTCAAAAATGTTTTAACTTGAACTTCAACATGCATGTTTTTTAGCAATAAAGATAATCATGCTATGTAAGCTAAATAAAAAATTATGCAAGGTTATGATTATAAGTTTGAAATCTCTTTTTTCTTTTTTTTTGAATTTTATGCTCAATAATGCACTATCATATAAAATGAAAACTGTTGGGGTATTTTCCCTTTTTAAAAGTATCATTTTCAATTTACATGTCATTTAATTTTGATGAAATGCCTCAACACTCCTTGCTTTGAAAAAATCTTCTTCTCTGGCTAGTGAGCTCTTGTTCCTGTCCATACACTATGAAAGTGTAATGATTAATATAAAACTTGCATTATGTTTTGTCTGCCCCACTATTTACTCATAGTGCTTTGATGGTCCCATAAACTAATGGGGGACTGAAGAAATATTCAGCACTTTCTTCATTTCTTGTTTTTTTTACACCAATTGAAGTAGGGTCTTTCGGAAACTGTATATCTTCAAGAGATAGGGATAACGACTAGGTATTTGGAAATTAGTTTGATGTTTTGACCCAAGCGAGCCTTAGAGCAATGATTAAGTTATCTTGTATAATCTATAGATCAGGGAATCTTGCCACGGAAGTAATGCTTGCGGTAGACAATCTACATCACATACCTAGTGGTTGGCCCTTAATTCCCCAAACTCTGCTAAGCGAGATGCTTTGTGCACCTGGTTGCTCTTTTCTTTTCGTATCTATGCTTAGTTCATCGATAATTCACAAGTTTGTGAGAGTGATATCCATTGACCTATTATTATAGCTTTCATTCATGATTATTTTCCTGTGAAAAACAGGTTATTTCAGTAATGAAGAAGCTACTGCTTCCACTCTAGACTCTGATGGATGGTTAAGAACTGGAGATCTATGCTATATAGATGAAGATGGTTTCATTTTTGTGGTTGATAGATTAAAGGAGCTCATCAAATATAAAGGTTATCAGGTAAATGAAAACAAACTCTCTCCTTCTTCCTATATATAGTTGGCTTTTCGCGAAATCCCCTGAAACATATTTTCCACATCAATGTTATCTAAGGCGAAAAATGCAAAAAAGCTCCAAAGTCCATTGGAGGCTAGAAGTAAAGCACAAAAAATCTTAAAACAGAATACAAATATGTATATGTAGTATTTGAATGAACTGAAAAAAAATTGGTTAAGTGAAATATCAACTGTTACAACATTTCACGATTATGCTTATTGGTAAGGAAAAGTACGTATTTAAGTCTTGATGACGACATTGAAGTGGATAAGTGAGGTGAAAGATTCAACATGTCTTGCTCCTCGCTTCAGAGCTTAAGTGCGCTTTATACATGATCTGACACTTTTCTTTATAGTTAAAACTTACGAGACAACTTTTCGTATCATCTTCTAGGTTCCTCCAGCAGAGTTAGAGGCTTTATTGCTCACTCA</genome_strand>
        <mrna_strand>GTTCTCAAATACAAAGCAACTTCTCTACCATTAGTGCCTCCAATTCTCGTTGCGCTTGTGAATAACGCTGATTGGATTAGGAAAAAATATGATTTAAGCAGCTTGGAGAGTGTTCTCTCCGGCGGTGCTCCGTTGAGTAAGGAAGTGATTGAGGGATTTGTAGAGAAGTATCCATCTGTGAGGATTTTGCAAGGGTATGGGTTGACAGAGTCGACCGGAATCGGGGCGTCGACGGATTCTTTGGAGGAGAGCCGGAGATATGGAACGGCGGGAATGTTGTCACCGAGCATGGAAGGGAAAATTGTTGAGCCGGAGAGTGGAAAAGCTTTGCCGGTGAATAAGACCGGTGAGCTTTGGCTAAGAGGACCTACCATTATGAAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTATTTCAGTAATGAAGAAGCTACTGCTTCCACTCTAGACTCTGATGGATGGTTAAGAACTGGAGATCTATGCTATATAGATGAAGATGGTTTCATTTTTGTGGTTGATAGATTAAAGGAGCTCATCAAATATAAAGGTTATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTCCAGCAGAGTTAGAGGCTTTATTGCTCACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E237844" ref_strand="+" ref_description="SGN-E237844 [cLED-18-L13]">
      <seq>tgaaaggttatttcagttatgaagaagctactgcttccactctagactctgatggatggttaagaactggagatctatgctatatagatgaagatggtttcatttttgtggttgatagattaaaggagctcatcaaatataaaggttatcaggttcctccagcagagttagaggctttattgctcactcatccagaaatttctgatgctgctgttataccgtttccggataaggaggtcggacagtttcctatggcatatgtagtacgtaaaactgggagtactatatcagagagtgcagtcatggatttcattgcgaaacaggttgctccatataaaagaattcggagagttgcatttgtggcttccataccgaagaatccttctgggaaaatactcaggaaggatttgataaagctagcaacatcaaaactctgagaacaagatttatgatttttgcattttagcaagtgtaacttcctcagcagccatagtcttgttattgtgctaaataatgagtgtgtgctcttgttgattattaatttggtatgattgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="80448" stop="82253"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80753" g_stop="80898" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="152" r_length="146" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80899" i_stop="81327" i_length="429">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81328" g_stop="81395" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="220" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81396" i_stop="81487" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81488" g_stop="81590" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="323" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81591" i_stop="81718" i_length="128">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81719" g_stop="81953" g_length="235"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="558" r_length="235" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E237844" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80753" e_stop="80898"/>
          <exon e_start="81328" e_stop="81395"/>
          <exon e_start="81488" e_stop="81590"/>
          <exon e_start="81719" e_stop="81953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATTTCAGTAATGAAGAAGCTACTGCTTCCACTCTAGACTCTGATGGATGGTTAAGAACTGGAGATCTATGCTATATAGATGAAGATGGTTTCATTTTTGTGGTTGATAGATTAAAGGAGCTCATCAAATATAAAGGTTATCAGGTAAATGAAAACAAACTCTCTCCTTCTTCCTATATATAGTTGGCTTTTCGCGAAATCCCCTGAAACATATTTTCCACATCAATGTTATCTAAGGCGAAAAATGCAAAAAAGCTCCAAAGTCCATTGGAGGCTAGAAGTAAAGCACAAAAAATCTTAAAACAGAATACAAATATGTATATGTAGTATTTGAATGAACTGAAAAAAAATTGGTTAAGTGAAATATCAACTGTTACAACATTTCACGATTATGCTTATTGGTAAGGAAAAGTACGTATTTAAGTCTTGATGACGACATTGAAGTGGATAAGTGAGGTGAAAGATTCAACATGTCTTGCTCCTCGCTTCAGAGCTTAAGTGCGCTTTATACATGATCTGACACTTTTCTTTATAGTTAAAACTTACGAGACAACTTTTCGTATCATCTTCTAGGTTCCTCCAGCAGAGTTAGAGGCTTTATTGCTCACTCATCCAGAAATTTCTGATGCTGCTGTTATACCGTGAGTGTTACTTCAAATCGCGCTTCCTCTTATGCTTTACTGTTTCAGTATGAATTTCTGATGATCGTTTCATTGATCTCGTTGTGTTTAAGGTTTCCGGATAAGGAGGTCGGACAGTTTCCTATGGCATATGTAGTACGTAAAACTGGGAGTACTATATCAGAGAGTGCAGTCATGGATTTCATTGCGAAACAGGTAATTTTAGAATAGTCACATTCTACTAGATCAATATATATAATAAGAACTCAGACTTGAAACTGGTTTTCGATTTCTGGTCATAGAATATGTAGTGATGCTCAAATTTATCGCGTTTGTTTGTGTAGGTTGCTCCATATAAAAGAATTCGGAGAGTTGCATTTGTGGCTTCCATACCGAAGAATCCTTCTGGGAAAATACTCAGGAAGGATTTGATAAAGCTAGCAACATCAAAACTCTGAGAACAAGATTTATGATTTTTGCATTTTAGCAAGTGTAACTTCCTCAGCAGCCATAGTCTTGTTATTGTGCTAAATAATGAGTGTGTGCTCTTGTTGATTATTAATTTGGTATGATTGTGGA</genome_strand>
        <mrna_strand>GTTATTTCAGTTATGAAGAAGCTACTGCTTCCACTCTAGACTCTGATGGATGGTTAAGAACTGGAGATCTATGCTATATAGATGAAGATGGTTTCATTTTTGTGGTTGATAGATTAAAGGAGCTCATCAAATATAAAGGTTATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTCCAGCAGAGTTAGAGGCTTTATTGCTCACTCATCCAGAAATTTCTGATGCTGCTGTTATACC............................................................................................GTTTCCGGATAAGGAGGTCGGACAGTTTCCTATGGCATATGTAGTACGTAAAACTGGGAGTACTATATCAGAGAGTGCAGTCATGGATTTCATTGCGAAACAG................................................................................................................................GTTGCTCCATATAAAAGAATTCGGAGAGTTGCATTTGTGGCTTCCATACCGAAGAATCCTTCTGGGAAAATACTCAGGAAGGATTTGATAAAGCTAGCAACATCAAAACTCTGAGAACAAGATTTATGATTTTTGCATTTTAGCAAGTGTAACTTCCTCAGCAGCCATAGTCTTGTTATTGTGCTAAATAATGAGTGTGTGCTCTTGTTGATTATTAATTTGGTATGATTGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E231113" ref_strand="+" ref_description="SGN-E231113 [cLED-5-N22]">
      <seq>tgaaaggttatttcagtaatgaagaagctactgcttccactctagactctgatggatggttaagaactggagatctatgctatatagatgaagatggtttcatttttgtggttgatagattaaaggagctcatcaaatataaaggttatcaggttcctccagcagagttagaggctttattgctcactcattcagaaatttctgatgctgctgttataccgtttccggataaggaggtcggacagtttcctatggcatatgtagtacgtaaaactgggagtactatatcagagagtgcagtcatggatttcattgcgaaacaggttgctccatataaaagaattcggagagttgcatttgtggcttccataccgaagaatccttctgggaaaatactcaggaaggatttgataaagctagcaacatcaaaactctgagaacaagatttatgatttttgcattttagcaagtgtaacttcctcagcagccatagtcttgttattgtgctaaataatgagtgtgtgctcttgttgattattaatttggtatgattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="80448" stop="82250"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80753" g_stop="80898" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="152" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80899" i_stop="81327" i_length="429">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81328" g_stop="81395" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="220" r_length="68" r_score="0.985"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81396" i_stop="81487" i_length="92">
            <donor d_prob="0.994" d_score="0.98"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81488" g_stop="81590" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="323" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81591" i_stop="81718" i_length="128">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81719" g_stop="81950" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="555" r_length="232" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E231113" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E231113" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80753" e_stop="80898"/>
          <exon e_start="81328" e_stop="81395"/>
          <exon e_start="81488" e_stop="81590"/>
          <exon e_start="81719" e_stop="81950"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATTTCAGTAATGAAGAAGCTACTGCTTCCACTCTAGACTCTGATGGATGGTTAAGAACTGGAGATCTATGCTATATAGATGAAGATGGTTTCATTTTTGTGGTTGATAGATTAAAGGAGCTCATCAAATATAAAGGTTATCAGGTAAATGAAAACAAACTCTCTCCTTCTTCCTATATATAGTTGGCTTTTCGCGAAATCCCCTGAAACATATTTTCCACATCAATGTTATCTAAGGCGAAAAATGCAAAAAAGCTCCAAAGTCCATTGGAGGCTAGAAGTAAAGCACAAAAAATCTTAAAACAGAATACAAATATGTATATGTAGTATTTGAATGAACTGAAAAAAAATTGGTTAAGTGAAATATCAACTGTTACAACATTTCACGATTATGCTTATTGGTAAGGAAAAGTACGTATTTAAGTCTTGATGACGACATTGAAGTGGATAAGTGAGGTGAAAGATTCAACATGTCTTGCTCCTCGCTTCAGAGCTTAAGTGCGCTTTATACATGATCTGACACTTTTCTTTATAGTTAAAACTTACGAGACAACTTTTCGTATCATCTTCTAGGTTCCTCCAGCAGAGTTAGAGGCTTTATTGCTCACTCATCCAGAAATTTCTGATGCTGCTGTTATACCGTGAGTGTTACTTCAAATCGCGCTTCCTCTTATGCTTTACTGTTTCAGTATGAATTTCTGATGATCGTTTCATTGATCTCGTTGTGTTTAAGGTTTCCGGATAAGGAGGTCGGACAGTTTCCTATGGCATATGTAGTACGTAAAACTGGGAGTACTATATCAGAGAGTGCAGTCATGGATTTCATTGCGAAACAGGTAATTTTAGAATAGTCACATTCTACTAGATCAATATATATAATAAGAACTCAGACTTGAAACTGGTTTTCGATTTCTGGTCATAGAATATGTAGTGATGCTCAAATTTATCGCGTTTGTTTGTGTAGGTTGCTCCATATAAAAGAATTCGGAGAGTTGCATTTGTGGCTTCCATACCGAAGAATCCTTCTGGGAAAATACTCAGGAAGGATTTGATAAAGCTAGCAACATCAAAACTCTGAGAACAAGATTTATGATTTTTGCATTTTAGCAAGTGTAACTTCCTCAGCAGCCATAGTCTTGTTATTGTGCTAAATAATGAGTGTGTGCTCTTGTTGATTATTAATTTGGTATGATTGT</genome_strand>
        <mrna_strand>GTTATTTCAGTAATGAAGAAGCTACTGCTTCCACTCTAGACTCTGATGGATGGTTAAGAACTGGAGATCTATGCTATATAGATGAAGATGGTTTCATTTTTGTGGTTGATAGATTAAAGGAGCTCATCAAATATAAAGGTTATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTCCAGCAGAGTTAGAGGCTTTATTGCTCACTCATTCAGAAATTTCTGATGCTGCTGTTATACC............................................................................................GTTTCCGGATAAGGAGGTCGGACAGTTTCCTATGGCATATGTAGTACGTAAAACTGGGAGTACTATATCAGAGAGTGCAGTCATGGATTTCATTGCGAAACAG................................................................................................................................GTTGCTCCATATAAAAGAATTCGGAGAGTTGCATTTGTGGCTTCCATACCGAAGAATCCTTCTGGGAAAATACTCAGGAAGGATTTGATAAAGCTAGCAACATCAAAACTCTGAGAACAAGATTTATGATTTTTGCATTTTAGCAAGTGTAACTTCCTCAGCAGCCATAGTCTTGTTATTGTGCTAAATAATGAGTGTGTGCTCTTGTTGATTATTAATTTGGTATGATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E375013" ref_strand="+" ref_description="SGN-E375013 [TUS-36-I13]">
      <seq>tgaaaggttatttcagtaatgaagaagctactgcttccactctagactctgatggatggttaagaactggagatctatgctatatagatgaagatggtttcatttttgtggttgatagattaaaggagctcatcaaatataaaggttatcaggttcctccagcagagttagaggctttattgctcactcatccagaaatttctgatgctgctgttataccgtttccggataaggaggtcggacagtttcctatggcatatgtagtacgtaaaactgggagtactatatcagagagtgcagtcatggatttcattgcgaaacaggttgctccatataaaagaattcggagagttgcatttgtggcttccataccgaagaatccttctgggaaaatactcaggaaggatttgataaagctagcaacatcaaaactctgagaacaagatttatgatttttgcattttagcaagtgtaacttcctcagcagccatagtcttgttattgtgctaaataatgagtgtgtgctcttgttgattatttaattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="80448" stop="82239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80753" g_stop="80898" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="152" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80899" i_stop="81327" i_length="429">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81328" g_stop="81395" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="220" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81396" i_stop="81487" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81488" g_stop="81590" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="323" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81591" i_stop="81718" i_length="128">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81719" g_stop="81939" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="545" r_length="222" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E375013" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80753" e_stop="80898"/>
          <exon e_start="81328" e_stop="81395"/>
          <exon e_start="81488" e_stop="81590"/>
          <exon e_start="81719" e_stop="81939"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATTTCAGTAATGAAGAAGCTACTGCTTCCACTCTAGACTCTGATGGATGGTTAAGAACTGGAGATCTATGCTATATAGATGAAGATGGTTTCATTTTTGTGGTTGATAGATTAAAGGAGCTCATCAAATATAAAGGTTATCAGGTAAATGAAAACAAACTCTCTCCTTCTTCCTATATATAGTTGGCTTTTCGCGAAATCCCCTGAAACATATTTTCCACATCAATGTTATCTAAGGCGAAAAATGCAAAAAAGCTCCAAAGTCCATTGGAGGCTAGAAGTAAAGCACAAAAAATCTTAAAACAGAATACAAATATGTATATGTAGTATTTGAATGAACTGAAAAAAAATTGGTTAAGTGAAATATCAACTGTTACAACATTTCACGATTATGCTTATTGGTAAGGAAAAGTACGTATTTAAGTCTTGATGACGACATTGAAGTGGATAAGTGAGGTGAAAGATTCAACATGTCTTGCTCCTCGCTTCAGAGCTTAAGTGCGCTTTATACATGATCTGACACTTTTCTTTATAGTTAAAACTTACGAGACAACTTTTCGTATCATCTTCTAGGTTCCTCCAGCAGAGTTAGAGGCTTTATTGCTCACTCATCCAGAAATTTCTGATGCTGCTGTTATACCGTGAGTGTTACTTCAAATCGCGCTTCCTCTTATGCTTTACTGTTTCAGTATGAATTTCTGATGATCGTTTCATTGATCTCGTTGTGTTTAAGGTTTCCGGATAAGGAGGTCGGACAGTTTCCTATGGCATATGTAGTACGTAAAACTGGGAGTACTATATCAGAGAGTGCAGTCATGGATTTCATTGCGAAACAGGTAATTTTAGAATAGTCACATTCTACTAGATCAATATATATAATAAGAACTCAGACTTGAAACTGGTTTTCGATTTCTGGTCATAGAATATGTAGTGATGCTCAAATTTATCGCGTTTGTTTGTGTAGGTTGCTCCATATAAAAGAATTCGGAGAGTTGCATTTGTGGCTTCCATACCGAAGAATCCTTCTGGGAAAATACTCAGGAAGGATTTGATAAAGCTAGCAACATCAAAACTCTGAGAACAAGATTTATGATTTTTGCATTTTAGCAAGTGTAACTTCCTCAGCAGCCATAGTCTTGTTATTGTGCTAAATAATGAGTGTGTGCTCTTGTTGATTA-TTAATTT</genome_strand>
        <mrna_strand>GTTATTTCAGTAATGAAGAAGCTACTGCTTCCACTCTAGACTCTGATGGATGGTTAAGAACTGGAGATCTATGCTATATAGATGAAGATGGTTTCATTTTTGTGGTTGATAGATTAAAGGAGCTCATCAAATATAAAGGTTATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTCCAGCAGAGTTAGAGGCTTTATTGCTCACTCATCCAGAAATTTCTGATGCTGCTGTTATACC............................................................................................GTTTCCGGATAAGGAGGTCGGACAGTTTCCTATGGCATATGTAGTACGTAAAACTGGGAGTACTATATCAGAGAGTGCAGTCATGGATTTCATTGCGAAACAG................................................................................................................................GTTGCTCCATATAAAAGAATTCGGAGAGTTGCATTTGTGGCTTCCATACCGAAGAATCCTTCTGGGAAAATACTCAGGAAGGATTTGATAAAGCTAGCAACATCAAAACTCTGAGAACAAGATTTATGATTTTTGCATTTTAGCAAGTGTAACTTCCTCAGCAGCCATAGTCTTGTTATTGTGCTAAATAATGAGTGTGTGCTCTTGTTGATTATTTAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E233351" ref_strand="+" ref_description="SGN-E233351 [cLED-9-O5]">
      <seq>tgaaaggttatttcagtaatgaagaagctactgcttccactctagactctgatggatggttaagaactggagatctatgctatatagatgaagatggtttcatttttgtggttgatagattaaaggagctcatcaaatataaaggttatcaggttcctccagcagagttagaggctttattgctcactcatccagaaatttctgatgctgctgttataccgtttccggataaggaggtcggacagtttcctatggcatatgtagtacgtaaaactggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="80448" stop="81845"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80753" g_stop="80898" g_length="146"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="152" r_length="146" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80899" i_stop="81327" i_length="429">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81328" g_stop="81395" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="220" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81396" i_stop="81487" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81488" g_stop="81545" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="221" r_stop="278" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E233351" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>272</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233351" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80753" e_stop="80898"/>
          <exon e_start="81328" e_stop="81395"/>
          <exon e_start="81488" e_stop="81545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTATTTCAGTAATGAAGAAGCTACTGCTTCCACTCTAGACTCTGATGGATGGTTAAGAACTGGAGATCTATGCTATATAGATGAAGATGGTTTCATTTTTGTGGTTGATAGATTAAAGGAGCTCATCAAATATAAAGGTTATCAGGTAAATGAAAACAAACTCTCTCCTTCTTCCTATATATAGTTGGCTTTTCGCGAAATCCCCTGAAACATATTTTCCACATCAATGTTATCTAAGGCGAAAAATGCAAAAAAGCTCCAAAGTCCATTGGAGGCTAGAAGTAAAGCACAAAAAATCTTAAAACAGAATACAAATATGTATATGTAGTATTTGAATGAACTGAAAAAAAATTGGTTAAGTGAAATATCAACTGTTACAACATTTCACGATTATGCTTATTGGTAAGGAAAAGTACGTATTTAAGTCTTGATGACGACATTGAAGTGGATAAGTGAGGTGAAAGATTCAACATGTCTTGCTCCTCGCTTCAGAGCTTAAGTGCGCTTTATACATGATCTGACACTTTTCTTTATAGTTAAAACTTACGAGACAACTTTTCGTATCATCTTCTAGGTTCCTCCAGCAGAGTTAGAGGCTTTATTGCTCACTCATCCAGAAATTTCTGATGCTGCTGTTATACCGTGAGTGTTACTTCAAATCGCGCTTCCTCTTATGCTTTACTGTTTCAGTATGAATTTCTGATGATCGTTTCATTGATCTCGTTGTGTTTAAGGTTTCCGGATAAGGAGGTCGGACAGTTTCCTATGGCATATGTAGTACGTAAAACTGGG</genome_strand>
        <mrna_strand>GTTATTTCAGTAATGAAGAAGCTACTGCTTCCACTCTAGACTCTGATGGATGGTTAAGAACTGGAGATCTATGCTATATAGATGAAGATGGTTTCATTTTTGTGGTTGATAGATTAAAGGAGCTCATCAAATATAAAGGTTATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTCCAGCAGAGTTAGAGGCTTTATTGCTCACTCATCCAGAAATTTCTGATGCTGCTGTTATACC............................................................................................GTTTCCGGATAAGGAGGTCGGACAGTTTCCTATGGCATATGTAGTACGTAAAACTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E214216" ref_strand="-" ref_description="SGN-E214216 [cLEC-77-E16]">
      <seq>ttcagtaatgagaaagctactgcttccactctagactctgatggatgtttaagaactggagatctatgctatatagatgaagatggtttcatttttgtggttgatagattaaaggagctcatcaaatataaaggttatcaggttcctccagcagagttagaggctttattgctcactcatccagaaatttctgatgctgctgttataccgtttccggataaggaggtcggacagtttcctatggcatatgtagtacgtaaaactgggagtactatatcagagagtgcagtcatggatttcattgcgaaacaggttgctccatataaaagaattcggagagttgcatttgtggcttccataccgaagaatccttctgggaaaatactcaggaaggatttgataaagctagcaacatcaaaactctgagaacaagatttatgatttttgcattttagcaagtgtaacttcctcagcagccatagtcttgttattgtgctaaataatgagtgtgtgctcttgttgattattaatttggtatgattgtggaggagtacgaagggaatgattcgctaagactcaactcattttgacctgtctaaatttaactcgacccgccatttgacagccccctaatgttatcatgaggtcacaggtttgagttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="80458" stop="82369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80758" g_stop="80898" g_length="141"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="141" r_length="141" r_score="0.979"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80899" i_stop="81327" i_length="429">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81328" g_stop="81395" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="142" r_stop="209" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81396" i_stop="81487" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81488" g_stop="81590" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="210" r_stop="312" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81591" i_stop="81718" i_length="128">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81719" g_stop="82069" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="313" r_stop="663" r_length="351" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E214216" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214216" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="80758" e_stop="80898"/>
          <exon e_start="81328" e_stop="81395"/>
          <exon e_start="81488" e_stop="81590"/>
          <exon e_start="81719" e_stop="82069"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGTAATGAAGAAGCTACTGCTTCCACTCTAGACTCTGATGGATGGTTAAGAACTGGAGATCTATGCTATATAGATGAAGATGGTTTCATTTTTGTGGTTGATAGATTAAAGGAGCTCATCAAATATAAAGGTTATCAGGTAAATGAAAACAAACTCTCTCCTTCTTCCTATATATAGTTGGCTTTTCGCGAAATCCCCTGAAACATATTTTCCACATCAATGTTATCTAAGGCGAAAAATGCAAAAAAGCTCCAAAGTCCATTGGAGGCTAGAAGTAAAGCACAAAAAATCTTAAAACAGAATACAAATATGTATATGTAGTATTTGAATGAACTGAAAAAAAATTGGTTAAGTGAAATATCAACTGTTACAACATTTCACGATTATGCTTATTGGTAAGGAAAAGTACGTATTTAAGTCTTGATGACGACATTGAAGTGGATAAGTGAGGTGAAAGATTCAACATGTCTTGCTCCTCGCTTCAGAGCTTAAGTGCGCTTTATACATGATCTGACACTTTTCTTTATAGTTAAAACTTACGAGACAACTTTTCGTATCATCTTCTAGGTTCCTCCAGCAGAGTTAGAGGCTTTATTGCTCACTCATCCAGAAATTTCTGATGCTGCTGTTATACCGTGAGTGTTACTTCAAATCGCGCTTCCTCTTATGCTTTACTGTTTCAGTATGAATTTCTGATGATCGTTTCATTGATCTCGTTGTGTTTAAGGTTTCCGGATAAGGAGGTCGGACAGTTTCCTATGGCATATGTAGTACGTAAAACTGGGAGTACTATATCAGAGAGTGCAGTCATGGATTTCATTGCGAAACAGGTAATTTTAGAATAGTCACATTCTACTAGATCAATATATATAATAAGAACTCAGACTTGAAACTGGTTTTCGATTTCTGGTCATAGAATATGTAGTGATGCTCAAATTTATCGCGTTTGTTTGTGTAGGTTGCTCCATATAAAAGAATTCGGAGAGTTGCATTTGTGGCTTCCATACCGAAGAATCCTTCTGGGAAAATACTCAGGAAGGATTTGATAAAGCTAGCAACATCAAAACTCTGAGAACAAGATTTATGATTTTTGCATTTTAGCAAGTGTAACTTCCTCAGCAGCCATAGTCTTGTTATTGTGCTAAATAATGAGTGTGTGCTCTTGTTGATTATTAATTTGGTATGATTGTGGAGGAGTACGAAGGGAATGATTCGCTAAGACTCAACTCATTTTGACCTGTCTAAATTTAACTCGACCCGCCATTTGACAGCCCCCTAATGTTATCATGAGGTCACAGGTTTGAGTTAT</genome_strand>
        <mrna_strand>TTCAGTAATGAGAAAGCTACTGCTTCCACTCTAGACTCTGATGGATGTTTAAGAACTGGAGATCTATGCTATATAGATGAAGATGGTTTCATTTTTGTGGTTGATAGATTAAAGGAGCTCATCAAATATAAAGGTTATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTCCAGCAGAGTTAGAGGCTTTATTGCTCACTCATCCAGAAATTTCTGATGCTGCTGTTATACC............................................................................................GTTTCCGGATAAGGAGGTCGGACAGTTTCCTATGGCATATGTAGTACGTAAAACTGGGAGTACTATATCAGAGAGTGCAGTCATGGATTTCATTGCGAAACAG................................................................................................................................GTTGCTCCATATAAAAGAATTCGGAGAGTTGCATTTGTGGCTTCCATACCGAAGAATCCTTCTGGGAAAATACTCAGGAAGGATTTGATAAAGCTAGCAACATCAAAACTCTGAGAACAAGATTTATGATTTTTGCATTTTAGCAAGTGTAACTTCCTCAGCAGCCATAGTCTTGTTATTGTGCTAAATAATGAGTGTGTGCTCTTGTTGATTATTAATTTGGTATGATTGTGGAGGAGTACGAAGGGAATGATTCGCTAAGACTCAACTCATTTTGACCTGTCTAAATTTAACTCGACCCGCCATTTGACAGCCCCCTAATGTTATCATGAGGTCACAGGTTTGAGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E374573" ref_strand="-" ref_description="SGN-E374573 [TUS-15-H17]">
      <seq>tccactctagactctgatggatggttaagaactggagatctatgctatatagatgaagatggtttcatttttgtggttgatagattaaaggagctcatcaaatataaaggttatcaggttcctccagcagagttagaggctttattgctcactcatccagaaatttctgatgctgctgttataccgtttccggataaggaggtcggacagtttcctatggcatatgtagtacgtaaaactgggagtactatatcagagagtgcagtcatggatttcattgcgaaacaggttgctccatataaaagaattcggagagttgcatttgtggcttccataccgaagaatccttctgggaaaatactcaggaaggatttgataaagctagcaacatcaaaactctgagaacaagatttatgatttttgcattttagcaagtgtaacttcctcagcagccatagtcttgttattgtgctaaataatgagtgtgtgctcttgttgattattaatttggtatgattgtggaggagtacgaagggaatgattcgctaaaaatcaactcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="80482" stop="82290"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80782" g_stop="80898" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="80899" i_stop="81327" i_length="429">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="81328" g_stop="81395" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="185" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="81396" i_stop="81487" i_length="92">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.955" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="81488" g_stop="81590" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="288" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="81591" i_stop="81718" i_length="128">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="81719" g_stop="81989" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="559" r_length="271" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="560" polyA_stop="569"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E374573" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E374573" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="80782" e_stop="80898"/>
          <exon e_start="81328" e_stop="81395"/>
          <exon e_start="81488" e_stop="81590"/>
          <exon e_start="81719" e_stop="81989"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTCTAGACTCTGATGGATGGTTAAGAACTGGAGATCTATGCTATATAGATGAAGATGGTTTCATTTTTGTGGTTGATAGATTAAAGGAGCTCATCAAATATAAAGGTTATCAGGTAAATGAAAACAAACTCTCTCCTTCTTCCTATATATAGTTGGCTTTTCGCGAAATCCCCTGAAACATATTTTCCACATCAATGTTATCTAAGGCGAAAAATGCAAAAAAGCTCCAAAGTCCATTGGAGGCTAGAAGTAAAGCACAAAAAATCTTAAAACAGAATACAAATATGTATATGTAGTATTTGAATGAACTGAAAAAAAATTGGTTAAGTGAAATATCAACTGTTACAACATTTCACGATTATGCTTATTGGTAAGGAAAAGTACGTATTTAAGTCTTGATGACGACATTGAAGTGGATAAGTGAGGTGAAAGATTCAACATGTCTTGCTCCTCGCTTCAGAGCTTAAGTGCGCTTTATACATGATCTGACACTTTTCTTTATAGTTAAAACTTACGAGACAACTTTTCGTATCATCTTCTAGGTTCCTCCAGCAGAGTTAGAGGCTTTATTGCTCACTCATCCAGAAATTTCTGATGCTGCTGTTATACCGTGAGTGTTACTTCAAATCGCGCTTCCTCTTATGCTTTACTGTTTCAGTATGAATTTCTGATGATCGTTTCATTGATCTCGTTGTGTTTAAGGTTTCCGGATAAGGAGGTCGGACAGTTTCCTATGGCATATGTAGTACGTAAAACTGGGAGTACTATATCAGAGAGTGCAGTCATGGATTTCATTGCGAAACAGGTAATTTTAGAATAGTCACATTCTACTAGATCAATATATATAATAAGAACTCAGACTTGAAACTGGTTTTCGATTTCTGGTCATAGAATATGTAGTGATGCTCAAATTTATCGCGTTTGTTTGTGTAGGTTGCTCCATATAAAAGAATTCGGAGAGTTGCATTTGTGGCTTCCATACCGAAGAATCCTTCTGGGAAAATACTCAGGAAGGATTTGATAAAGCTAGCAACATCAAAACTCTGAGAACAAGATTTATGATTTTTGCATTTTAGCAAGTGTAACTTCCTCAGCAGCCATAGTCTTGTTATTGTGCTAAATAATGAGTGTGTGCTCTTGTTGATTATTAATTTGGTATGATTGTGGAGGAGTACGAAGGGAATGATTCGCTAAGACTCAACTC</genome_strand>
        <mrna_strand>TCCACTCTAGACTCTGATGGATGGTTAAGAACTGGAGATCTATGCTATATAGATGAAGATGGTTTCATTTTTGTGGTTGATAGATTAAAGGAGCTCATCAAATATAAAGGTTATCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTCCAGCAGAGTTAGAGGCTTTATTGCTCACTCATCCAGAAATTTCTGATGCTGCTGTTATACC............................................................................................GTTTCCGGATAAGGAGGTCGGACAGTTTCCTATGGCATATGTAGTACGTAAAACTGGGAGTACTATATCAGAGAGTGCAGTCATGGATTTCATTGCGAAACAG................................................................................................................................GTTGCTCCATATAAAAGAATTCGGAGAGTTGCATTTGTGGCTTCCATACCGAAGAATCCTTCTGGGAAAATACTCAGGAAGGATTTGATAAAGCTAGCAACATCAAAACTCTGAGAACAAGATTTATGATTTTTGCATTTTAGCAAGTGTAACTTCCTCAGCAGCCATAGTCTTGTTATTGTGCTAAATAATGAGTGTGTGCTCTTGTTGATTATTAATTTGGTATGATTGTGGAGGAGTACGAAGGGAATGATTCGCTAAAAATCAACTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E216003" ref_strand="-" ref_description="SGN-E216003 [cLEL-13-I19]">
      <seq>cgaaagggttggggaaagacaatagtcgttggagttgataaaccgggagcaacgctgacatttaaatcttccgatattctacatttggggaaaactatcatgggatcactctttggaggtctcaaacccaaatctgacattcctcttcttgtcaaacgttacctcgacaaggaactggaactagacaagtttgtaacacatgaagtgagttttcaacacatcaacacggcttttgatctgctcgttgaaggaaagagtctacgatgtgttatctggatggataagtgatcgatccctgttagtactgatcgcgtgttcttgagaaaggattgcttcgtaatctatatgaattcgatatgtaactacgatttaagcaagaccaagaatatttcagagtaatgttagtactcttctgcataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="87328" stop="86238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87136" g_stop="87131" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="87130" i_stop="87027" i_length="104">
            <donor d_prob="0.430" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="87026" g_stop="86862" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="171" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="86861" i_stop="86786" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="86785" g_stop="86539" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="418" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="419" polyA_stop="435"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E216003" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>418</cumulative_length_of_scored_exons>
        <coverage percentage="0.961" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216003" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="87136" e_stop="87131"/>
          <exon e_start="87026" e_stop="86862"/>
          <exon e_start="86785" e_stop="86539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAGGTTTTCCCACGTAGCTTTTCCATTCATAACCATCAAAGTAACTTCCTTAGAACTACTCATCATACGTATATATTTGTTCATTCCTACTTTGGCTGTTATATCAGGGTTGGGGAAAGACAATAGTCGTTGGAGTTGATAAACCGGGAGCAACGCTGACATTTAAATCTTCCGATATTCTACATTTGGGGAAAACTATCATGGGATCACTCTTTGGAGGTCTCAAACCCAAATCTGACATTCCTCTTCTTGTCAAACGTTACCTCGACAAGGTAAATTGCAATCTTGGTCTGGTGTCGTTTATCATTTCCATCTTTACTAGTCCATACTTTTTTCGTGTTGCTTTAGGAACTGGAACTAGACAAGTTTGTAACACATGAAGTGAGTTTTCAACACATCAACACGGCTTTTGATCTGCTCGTTGAAGGAAAGAGTCTACGATGTGTTATCTGGATGGATAAGTGATCGATCCCTGTTAGTACTGATCGCGTGTTCTTGAGAAAGGATTGCTTCGTAATCTATATGAATTCGATATGTAACTACGATTTAAGCAAGACCAAGAATATTTCAGAGTAATGTTAGTACTCTTCTGCAT</genome_strand>
        <mrna_strand>CGAAAG........................................................................................................GGTTGGGGAAAGACAATAGTCGTTGGAGTTGATAAACCGGGAGCAACGCTGACATTTAAATCTTCCGATATTCTACATTTGGGGAAAACTATCATGGGATCACTCTTTGGAGGTCTCAAACCCAAATCTGACATTCCTCTTCTTGTCAAACGTTACCTCGACAAG............................................................................GAACTGGAACTAGACAAGTTTGTAACACATGAAGTGAGTTTTCAACACATCAACACGGCTTTTGATCTGCTCGTTGAAGGAAAGAGTCTACGATGTGTTATCTGGATGGATAAGTGATCGATCCCTGTTAGTACTGATCGCGTGTTCTTGAGAAAGGATTGCTTCGTAATCTATATGAATTCGATATGTAACTACGATTTAAGCAAGACCAAGAATATTTCAGAGTAATGTTAGTACTCTTCTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E225390" ref_strand="-" ref_description="SGN-E225390 [cLEL-17-F24]">
      <seq>gaaagacaatagtcgttgcagttgataaaccgggagcaacgctgacatttacatcttccgatattccacatttggggaaaactatcatgggatcactctttggaggtctcgaacccaaatctgacattcctcttcttgtcaaacgttacctccacaaggaactggaactagacaagtttgtaacacatgaagtgagttttcaacacatcaacacggcttttgatctgctcgttgaaggaaagagtctacgatgtgttatctggatggataagtgatcgatccctgttagtactgatcgcgtgctcttgagaaaggattgcttcgtaatctatatgaattcgatatgtaactacgatttaagcaagaccaagaatatttcagagtaatgttagtactcttctgcataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="87319" stop="86238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="87019" g_stop="86862" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86786" i_length="76">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86785" g_stop="86539" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="405" r_length="247" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="406" polyA_stop="422"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E225390" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.960" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225390" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="87019" e_stop="86862"/>
          <exon e_start="86785" e_stop="86539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAGACAATAGTCGTTGGAGTTGATAAACCGGGAGCAACGCTGACATTTAAATCTTCCGATATTCTACATTTGGGGAAAACTATCATGGGATCACTCTTTGGAGGTCTCAAACCCAAATCTGACATTCCTCTTCTTGTCAAACGTTACCTCGACAAGGTAAATTGCAATCTTGGTCTGGTGTCGTTTATCATTTCCATCTTTACTAGTCCATACTTTTTTCGTGTTGCTTTAGGAACTGGAACTAGACAAGTTTGTAACACATGAAGTGAGTTTTCAACACATCAACACGGCTTTTGATCTGCTCGTTGAAGGAAAGAGTCTACGATGTGTTATCTGGATGGATAAGTGATCGATCCCTGTTAGTACTGATCGCGTGTTCTTGAGAAAGGATTGCTTCGTAATCTATATGAATTCGATATGTAACTACGATTTAAGCAAGACCAAGAATATTTCAGAGTAATGTTAGTACTCTTCTGCAT</genome_strand>
        <mrna_strand>GAAAGACAATAGTCGTTGCAGTTGATAAACCGGGAGCAACGCTGACATTTACATCTTCCGATATTCCACATTTGGGGAAAACTATCATGGGATCACTCTTTGGAGGTCTCGAACCCAAATCTGACATTCCTCTTCTTGTCAAACGTTACCTCCACAAG............................................................................GAACTGGAACTAGACAAGTTTGTAACACATGAAGTGAGTTTTCAACACATCAACACGGCTTTTGATCTGCTCGTTGAAGGAAAGAGTCTACGATGTGTTATCTGGATGGATAAGTGATCGATCCCTGTTAGTACTGATCGCGTGCTCTTGAGAAAGGATTGCTTCGTAATCTATATGAATTCGATATGTAACTACGATTTAAGCAAGACCAAGAATATTTCAGAGTAATGTTAGTACTCTTCTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E216371" ref_strand="-" ref_description="SGN-E216371 [cLEL-13-I19]">
      <seq>taaaccgggagcaacgctgacatttaaatcttccgatattctacatttggggaaaactatcatgggatcactctttggaggtctcaaacccaaatctgacattcctcttcttgtcaaacgttacctcgacaaggaactggaactagacaagtttgtaacacatgaagtgagttttcaacacatcaacacggcttttgatctgctcgttgaaggaaagagtctacgatgtgttatctggatggataagtgatcgatccctgttagtactgatcgcgtgttcttgagaaaggattgcttcgtaatctatatgaattcgatatgtaactacgatttaagcaagaccaagaatatttcagagtaatgttagtactcttctgcataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="87294" stop="86238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86994" g_stop="86862" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86786" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86785" g_stop="86539" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="380" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="381" polyA_stop="397"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E216371" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E216371" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="86994" e_stop="86862"/>
          <exon e_start="86785" e_stop="86539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAACCGGGAGCAACGCTGACATTTAAATCTTCCGATATTCTACATTTGGGGAAAACTATCATGGGATCACTCTTTGGAGGTCTCAAACCCAAATCTGACATTCCTCTTCTTGTCAAACGTTACCTCGACAAGGTAAATTGCAATCTTGGTCTGGTGTCGTTTATCATTTCCATCTTTACTAGTCCATACTTTTTTCGTGTTGCTTTAGGAACTGGAACTAGACAAGTTTGTAACACATGAAGTGAGTTTTCAACACATCAACACGGCTTTTGATCTGCTCGTTGAAGGAAAGAGTCTACGATGTGTTATCTGGATGGATAAGTGATCGATCCCTGTTAGTACTGATCGCGTGTTCTTGAGAAAGGATTGCTTCGTAATCTATATGAATTCGATATGTAACTACGATTTAAGCAAGACCAAGAATATTTCAGAGTAATGTTAGTACTCTTCTGCAT</genome_strand>
        <mrna_strand>TAAACCGGGAGCAACGCTGACATTTAAATCTTCCGATATTCTACATTTGGGGAAAACTATCATGGGATCACTCTTTGGAGGTCTCAAACCCAAATCTGACATTCCTCTTCTTGTCAAACGTTACCTCGACAAG............................................................................GAACTGGAACTAGACAAGTTTGTAACACATGAAGTGAGTTTTCAACACATCAACACGGCTTTTGATCTGCTCGTTGAAGGAAAGAGTCTACGATGTGTTATCTGGATGGATAAGTGATCGATCCCTGTTAGTACTGATCGCGTGTTCTTGAGAAAGGATTGCTTCGTAATCTATATGAATTCGATATGTAACTACGATTTAAGCAAGACCAAGAATATTTCAGAGTAATGTTAGTACTCTTCTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E225834" ref_strand="-" ref_description="SGN-E225834 [cLEL-17-F24]">
      <seq>gcaacgctgacatttaaatcttccgatattctacatttggggaaaactatcatgggatcactctttggaggtctcaaacccaaatctgacattcctcttcttgtcaaacgttacctcgacaaggaactggaactagacaagtttgtaacacatgaagtgagttttcaacacatcaacacggcttttgatctgctcgttgaaggaaagagtctacgatgtgttatctggatggataagtgatcgatccctgttagtactgatcgcgtgttcttgagaaaggattgcttcgtaatctatatgaattcgatatgtaactacgatttaagcaagaccaagaatatttcagagtaatgttagtactcttctgcataaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="87284" stop="86238"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="86984" g_stop="86862" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="86861" i_stop="86786" i_length="76">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="86785" g_stop="86539" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="370" r_length="247" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="371" polyA_stop="387"/>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E225834" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>370</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E225834" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="86984" e_stop="86862"/>
          <exon e_start="86785" e_stop="86539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAACGCTGACATTTAAATCTTCCGATATTCTACATTTGGGGAAAACTATCATGGGATCACTCTTTGGAGGTCTCAAACCCAAATCTGACATTCCTCTTCTTGTCAAACGTTACCTCGACAAGGTAAATTGCAATCTTGGTCTGGTGTCGTTTATCATTTCCATCTTTACTAGTCCATACTTTTTTCGTGTTGCTTTAGGAACTGGAACTAGACAAGTTTGTAACACATGAAGTGAGTTTTCAACACATCAACACGGCTTTTGATCTGCTCGTTGAAGGAAAGAGTCTACGATGTGTTATCTGGATGGATAAGTGATCGATCCCTGTTAGTACTGATCGCGTGTTCTTGAGAAAGGATTGCTTCGTAATCTATATGAATTCGATATGTAACTACGATTTAAGCAAGACCAAGAATATTTCAGAGTAATGTTAGTACTCTTCTGCAT</genome_strand>
        <mrna_strand>GCAACGCTGACATTTAAATCTTCCGATATTCTACATTTGGGGAAAACTATCATGGGATCACTCTTTGGAGGTCTCAAACCCAAATCTGACATTCCTCTTCTTGTCAAACGTTACCTCGACAAG............................................................................GAACTGGAACTAGACAAGTTTGTAACACATGAAGTGAGTTTTCAACACATCAACACGGCTTTTGATCTGCTCGTTGAAGGAAAGAGTCTACGATGTGTTATCTGGATGGATAAGTGATCGATCCCTGTTAGTACTGATCGCGTGTTCTTGAGAAAGGATTGCTTCGTAATCTATATGAATTCGATATGTAACTACGATTTAAGCAAGACCAAGAATATTTCAGAGTAATGTTAGTACTCTTCTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E728606" ref_strand="+" ref_description="SGN-E728606 [LA18BD11]">
      <seq>ctgcctcacaagctgagttgagcaaaactgctggaaaaccaattcactgcagagcggcagtggcaagaaaagcaggagaacctctggtgatagaggaagtgattgtggctcctcctaaagcctgtgaagttcgtataaaaatcgtttgtacttctctctgtcacagtgatgttaccttctggaagttgaaagacttccctggatgctttccaagaatattgggacacgaagctttcgggattgtggagagtgttggagaaaatgtccaggatttaaaagaaggagattcagttatcccgatatttttgcccgactgtactgaatgtatagattgcacatccaagaagagcaacagttgttcacaattccaatttaaggtatctccgtggatgcttagagatggtactagtcgattcactactgttgatggagaaactttataccattttctgtctgtatcaagtttcgccgagtacactgttgtagacattgctaatgtaacgaagatcgatcctcgtgttccacctaacagggcatgcctctttagttgtggagtctcaacaggagtaggtgctgccctgaaaactgcaaacgtggaacaaggatcgactgttgtgatatttggtttgggcggaattggattagcagttgcagagggagcgaggatatgtggtgcttcaagaattattggcgtagatataaacactgacaagttcgaaatagggaagcaatttggagtgactgattttgtcgattcgaatagctatggggataaacctattagccaggtgatnaatgagatgactaacggaggtgctgactactgcttcgagtgtgttggtatgggaacactcgtgggagaagcatatgcctgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="90534" stop="86839"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90234" g_stop="90181" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="54" r_length="54" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90180" i_stop="89525" i_length="656">
            <donor d_prob="0.581" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89524" g_stop="89388" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="55" r_stop="191" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89387" i_stop="89282" i_length="106">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89281" g_stop="89235" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="238" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89234" i_stop="88475" i_length="760">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88474" g_stop="88149" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="564" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88148" i_stop="87931" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87930" g_stop="87848" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="565" r_stop="647" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="87847" i_stop="87763" i_length="85">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.821" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87762" g_stop="87687" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="723" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="87686" i_stop="87563" i_length="124">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.750" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="87562" g_stop="87498" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="788" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="87497" i_stop="87227" i_length="271">
            <donor d_prob="0.869" d_score="1.00"/>
            <acceptor a_prob="0.492" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="87226" g_stop="87139" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="789" r_stop="876" r_length="88" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E728606" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>876</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E728606" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90234" e_stop="90181"/>
          <exon e_start="89524" e_stop="89388"/>
          <exon e_start="89281" e_stop="89235"/>
          <exon e_start="88474" e_stop="88149"/>
          <exon e_start="87930" e_stop="87848"/>
          <exon e_start="87762" e_stop="87687"/>
          <exon e_start="87562" e_stop="87498"/>
          <exon e_start="87226" e_stop="87139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCCACACAAGCTGAGTTGAGCAAAACTGCTGGAAAACCAATTCACTGCAGAGGTACTCTTCAGAAACTCCCTCCCCCCACCCCCCACCCCACCACCACAAGTTTTGTCCCCATCTTTTCAAAATCAAATCTTTAAAGAATCTTTGATTATAATTAGCTATGAAAACAATGTTGATTCTTTATGTGGATCTTGAATTGGCTATGTTTTGTAAGCAAAGGTTGAATCTTTGAGGAATCTTGAAATTGGGGTAGGAGTAGTAATGGAGCTAGGATATTTTTCACTAAAGGGAATTGAAAAAAATAAAGAAGTTGAGATATACAAATTAAAATTATAATCTTATATATACAGTGTAATTTTATGACGAAGTGATTACGAATGAACCCCTTTGCCCCCTAACTTGACCATAGTAAGAGGTAATTGTTGTTGAGTCTCACATTGGTGCTTTAAGGGATTTGAGGTCTCTTTATATGGTCTTTGGTAATCGTCGAGATATAGCTTGTGGGGTTGAGTTAGGTTCATTTAACGGCTAAGGAATATGAGTAAATTTGAGTAATTTTAGTTGGTTTGTCAGCCTATGGAAAAGTTCTTTGTTCTTTATATGGATCAAAGGTTGAATCTTTTGACGAATCTTGAAAAGGGGTATGAGGAATTTGTCAGTTCTGTTTTATTTTGTGAAAAAACCCGCGTAATTGTGAGTTACATTTGCAGCGGCAGTGGCAAGAAAAGCAGGAGAACCTCTGGTGATAGAGGAAGTGATTGTGGCTCCTCCTAAAGCCTGTGAAGTTCGTATAAAAATCGTTTGTACTTCTCTCTGTCACAGTGATGTTACCTTCTGGAAGTTGAAAGTATGTAATTTTGTGCTAATAAAAGTTGCAAAAATTTGATCTTTTTACTGAAGAAAGTGTCTGTTTAACTTGTTTTTGAATAATCAGATTCTTGGTTTTCCTTTAGGACTTCCCTGGATGCTTTCCAAGAATATTGGGACACGAAGCTTTCGGGTACTTTTAGTATATTCCCCTATCAAGTTCATTTATCTGTTGTAAATATTTTTAAAGAATACTTGATTGGTAGTACATGTTACTCCCTTCGTTTCGATTCAAGTATCTTACTTTTCGTCTGCTATTATAAAGAGTGTCTCTATCTATATTTGGTGCATTTTTTTCTGCATAGCACGTCTAAGACAAAGATTCAAAGCGCATTTAGTACTTTACACACCTTTAGTTTAAGACCATGGGATTCGAAAAGTCTTCTTTATTTTCTGAAACTCCATGCCTAGTCAAACTAAGACACCTAAATGGAAATGGAGGGTCAGCTCGTTATTTGTTCTATTGTTGAAAGTCACTGCATATCCCTTTTCACCAGTCTCTAATTTCAATGCAGATTTATTTTAGCTCACGTTTGGAATAATCGAGTTTTAGTTTGTAACTCCTTACGAATTTCATTTAGCGCTAGCCACTTATCGTAAAGCCATTAGGCTATGTCTTTAAGTCAAACATGCATGCTTTAAAGAAACAACTGTGCATTGATGATGGCGTGGTTATTCTTAAGCTTGCGTTTTTGTGAGATTAAGATTTTGTTCTCTGAAAGTTCATTTTCCTCTAGTACTTTTAGTGTAATATGTAAAGCGTTCCTTTTGTTATCCTCAAGAACTTTACCGTCAATTGAGTCTTAATATTTGAATTGCTTTTTCCTTGTACCTGTAATTTTTGCATCAGTGCATGAACACGCACTTTCCTTATCGCATGTTATTCACTGAAGGATTGTGGAGAGTGTTGGAGAAAATGTCCAGGATTTAAAAGAAGGAGATTCAGTTATCCCGATATTTTTGCCCGACTGTACTGAATGTATAGATTGCACATCCAAGAAGAGCAACAGTTGTTCACAATTCCAATTTAAGGTATCTCCGTGGATGCTTAGAGATGGTACTAGTCGATTCACTACTGTTGATGGAGAAACTTTATACCATTTTCTGTCTGTATCAAGTTTCGCCGAGTACACTGTTGTAGACATTGCTAATGTAACGAAGATCGATCCTCGTGTTCCACCTAACAGGGCATGCCTCTTTAGTTGTGGAGTCTCAACAGGTTAGTTTCTGACCCCGTCTAAATTCCCTTTTAGACTTAATGTCATTTCAGTTTCAACTTCTTAACAGCCGCGGTGCTTAAATCATCATACAAAATTGTTTTCCGTAATCTTATTCATCAGATGTCTCAGAGGAAATCGATAGACGAATACAAATTTATCTAACTCTCTTTAGAAGTTCGAATAAGTTCAAGTCTGATATTATGTAAGATGAGCTCAGGAGTAGGTGCTGCCCTGAAAACTGCAAACGTGGAACAAGGATCGACTGTTGTGATATTTGGTTTGGGCGGAATTGGATTAGCAGTATGTTTCTCTTCTGATTCTTCTTGCTTATATTGGTAGACGAGTTAGTGCCGGTGGGTTTATATGCTTACGTTACGTCTCATAGGTTGCAGAGGGAGCGAGGATATGTGGTGCTTCAAGAATTATTGGCGTAGATATAAACACTGACAAGTTCGAAATAGGTGAACTTTCTTCTTCATTCTTCCCAATTCGTTTCGTTCTCTGTTTGTTTGCTACTAGAAACTAACAATACTCTTCTGCGTTTCCCGTGTCCTCCGTGCTCTTTTCTTTTCACATTTGACTCAGGGAAGCAATTTGGAGTGACTGATTTTGTCGATTCGAATAGCTATGGGGATAAACCTATTAGCCAGGTCGGTTTTTTTATTGCTCGGCTTGATATTTGATGCTCCAAAAACTGTCACCTATCGTTCTAGATTGATAACATGATATTTCAAGTAAAAATCTTGCCAATTTTTAATCGTTCAAGTAGCACGAATCATTTCTATATTTTGCTCAGCGTATGGCATGGATCGTTATATTCCATGCCCAATTTTACGTTCCTCTCATTTCTAGTGCTTACGGATTATTAGATCCTCTCATGCCGATGATGATCACATTTCCTTTTGGCCCTTTTTTGACCAGGTGATAAATGAGATGACTAACGGAGGTGCTGACTACTGCTTCGAGTGTGTTGGTATGGGAACACTCGTGGAGGAAGCATATGCCTGCT</genome_strand>
        <mrna_strand>CTGCCTCACAAGCTGAGTTGAGCAAAACTGCTGGAAAACCAATTCACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCAGTGGCAAGAAAAGCAGGAGAACCTCTGGTGATAGAGGAAGTGATTGTGGCTCCTCCTAAAGCCTGTGAAGTTCGTATAAAAATCGTTTGTACTTCTCTCTGTCACAGTGATGTTACCTTCTGGAAGTTGAAA..........................................................................................................GACTTCCCTGGATGCTTTCCAAGAATATTGGGACACGAAGCTTTCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGTGGAGAGTGTTGGAGAAAATGTCCAGGATTTAAAAGAAGGAGATTCAGTTATCCCGATATTTTTGCCCGACTGTACTGAATGTATAGATTGCACATCCAAGAAGAGCAACAGTTGTTCACAATTCCAATTTAAGGTATCTCCGTGGATGCTTAGAGATGGTACTAGTCGATTCACTACTGTTGATGGAGAAACTTTATACCATTTTCTGTCTGTATCAAGTTTCGCCGAGTACACTGTTGTAGACATTGCTAATGTAACGAAGATCGATCCTCGTGTTCCACCTAACAGGGCATGCCTCTTTAGTTGTGGAGTCTCAACAG..........................................................................................................................................................................................................................GAGTAGGTGCTGCCCTGAAAACTGCAAACGTGGAACAAGGATCGACTGTTGTGATATTTGGTTTGGGCGGAATTGGATTAGCA.....................................................................................GTTGCAGAGGGAGCGAGGATATGTGGTGCTTCAAGAATTATTGGCGTAGATATAAACACTGACAAGTTCGAAATAG............................................................................................................................GGAAGCAATTTGGAGTGACTGATTTTGTCGATTCGAATAGCTATGGGGATAAACCTATTAGCCAG...............................................................................................................................................................................................................................................................................GTGATNAATGAGATGACTAACGGAGGTGCTGACTACTGCTTCGAGTGTGTTGGTATGGGAACACTCGTGGGAGAAGCATATGCCTGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E731934" ref_strand="+" ref_description="SGN-E731934 [LA28CD12]">
      <seq>tggaaaaccaattcactgcagagcggcagtggcaagaaaagcaggagaacctctggtgatagaggaagtgattgtggctcctcctaaagcctgtgaagttcgtataaaaatcgtttgtacttctctctgtcacagtgatgttaccttctggaagttgaaagacttccctggatgctttccaagaatattgggacacgaagctttcgggattgtggagagtgttggagaaaatgtccaggatttaaaagaaggagattcagttatcccgatatttttgcccgactgtactgaatgtatagattgcacatccaagaagagcaacagttgttcacaattccaatttaaggtatctccgtggatgcttagagatggtactagtcgattcactactgttgatggagaaactttataccattttctgtctgtatcaagtttcgccgagtacactgttgtagacattgctaatgtaacgaagatcgatcctcgtgttccacctaacagggcatgcctctttagttgtggagtctcaacaggagtaggtgctgccctgaaaactgcaaacgtggaacaaggatcgactgttgtgatatttggtttgggcggaattggattagcagttgcagagggagcgaggatatgtggtgcttcaagaattattggcgtagatataaacactgacaagttcgaaatagggaagcaatttggagtgactgatttttgtcgattcgaatagctatggggataaacctattagccaggtgataaatgagatgactaacggaggtgctgactactgcttcgagtgtgttggtatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="90503" stop="86870"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90203" g_stop="90181" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90180" i_stop="89525" i_length="656">
            <donor d_prob="0.581" d_score="0.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89524" g_stop="89388" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="160" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89387" i_stop="89282" i_length="106">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89281" g_stop="89235" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="207" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89234" i_stop="88475" i_length="760">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88474" g_stop="88149" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="533" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88148" i_stop="87931" i_length="218">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87930" g_stop="87848" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="534" r_stop="616" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="87847" i_stop="87763" i_length="85">
            <donor d_prob="0.933" d_score="1.00"/>
            <acceptor a_prob="0.821" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87762" g_stop="87687" g_length="76"/>
          <reference_exon_boundary r_type="cDNA" r_start="617" r_stop="692" r_length="76" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="87686" i_stop="87563" i_length="124">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.750" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="87562" g_stop="87498" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="693" r_stop="758" r_length="66" r_score="0.969"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="87497" i_stop="87227" i_length="271">
            <donor d_prob="0.869" d_score="0.96"/>
            <acceptor a_prob="0.492" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="87226" g_stop="87170" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="759" r_stop="815" r_length="57" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E731934" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>814</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E731934" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90203" e_stop="90181"/>
          <exon e_start="89524" e_stop="89388"/>
          <exon e_start="89281" e_stop="89235"/>
          <exon e_start="88474" e_stop="88149"/>
          <exon e_start="87930" e_stop="87848"/>
          <exon e_start="87762" e_stop="87687"/>
          <exon e_start="87562" e_stop="87498"/>
          <exon e_start="87226" e_stop="87170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGAAAACCAATTCACTGCAGAGGTACTCTTCAGAAACTCCCTCCCCCCACCCCCCACCCCACCACCACAAGTTTTGTCCCCATCTTTTCAAAATCAAATCTTTAAAGAATCTTTGATTATAATTAGCTATGAAAACAATGTTGATTCTTTATGTGGATCTTGAATTGGCTATGTTTTGTAAGCAAAGGTTGAATCTTTGAGGAATCTTGAAATTGGGGTAGGAGTAGTAATGGAGCTAGGATATTTTTCACTAAAGGGAATTGAAAAAAATAAAGAAGTTGAGATATACAAATTAAAATTATAATCTTATATATACAGTGTAATTTTATGACGAAGTGATTACGAATGAACCCCTTTGCCCCCTAACTTGACCATAGTAAGAGGTAATTGTTGTTGAGTCTCACATTGGTGCTTTAAGGGATTTGAGGTCTCTTTATATGGTCTTTGGTAATCGTCGAGATATAGCTTGTGGGGTTGAGTTAGGTTCATTTAACGGCTAAGGAATATGAGTAAATTTGAGTAATTTTAGTTGGTTTGTCAGCCTATGGAAAAGTTCTTTGTTCTTTATATGGATCAAAGGTTGAATCTTTTGACGAATCTTGAAAAGGGGTATGAGGAATTTGTCAGTTCTGTTTTATTTTGTGAAAAAACCCGCGTAATTGTGAGTTACATTTGCAGCGGCAGTGGCAAGAAAAGCAGGAGAACCTCTGGTGATAGAGGAAGTGATTGTGGCTCCTCCTAAAGCCTGTGAAGTTCGTATAAAAATCGTTTGTACTTCTCTCTGTCACAGTGATGTTACCTTCTGGAAGTTGAAAGTATGTAATTTTGTGCTAATAAAAGTTGCAAAAATTTGATCTTTTTACTGAAGAAAGTGTCTGTTTAACTTGTTTTTGAATAATCAGATTCTTGGTTTTCCTTTAGGACTTCCCTGGATGCTTTCCAAGAATATTGGGACACGAAGCTTTCGGGTACTTTTAGTATATTCCCCTATCAAGTTCATTTATCTGTTGTAAATATTTTTAAAGAATACTTGATTGGTAGTACATGTTACTCCCTTCGTTTCGATTCAAGTATCTTACTTTTCGTCTGCTATTATAAAGAGTGTCTCTATCTATATTTGGTGCATTTTTTTCTGCATAGCACGTCTAAGACAAAGATTCAAAGCGCATTTAGTACTTTACACACCTTTAGTTTAAGACCATGGGATTCGAAAAGTCTTCTTTATTTTCTGAAACTCCATGCCTAGTCAAACTAAGACACCTAAATGGAAATGGAGGGTCAGCTCGTTATTTGTTCTATTGTTGAAAGTCACTGCATATCCCTTTTCACCAGTCTCTAATTTCAATGCAGATTTATTTTAGCTCACGTTTGGAATAATCGAGTTTTAGTTTGTAACTCCTTACGAATTTCATTTAGCGCTAGCCACTTATCGTAAAGCCATTAGGCTATGTCTTTAAGTCAAACATGCATGCTTTAAAGAAACAACTGTGCATTGATGATGGCGTGGTTATTCTTAAGCTTGCGTTTTTGTGAGATTAAGATTTTGTTCTCTGAAAGTTCATTTTCCTCTAGTACTTTTAGTGTAATATGTAAAGCGTTCCTTTTGTTATCCTCAAGAACTTTACCGTCAATTGAGTCTTAATATTTGAATTGCTTTTTCCTTGTACCTGTAATTTTTGCATCAGTGCATGAACACGCACTTTCCTTATCGCATGTTATTCACTGAAGGATTGTGGAGAGTGTTGGAGAAAATGTCCAGGATTTAAAAGAAGGAGATTCAGTTATCCCGATATTTTTGCCCGACTGTACTGAATGTATAGATTGCACATCCAAGAAGAGCAACAGTTGTTCACAATTCCAATTTAAGGTATCTCCGTGGATGCTTAGAGATGGTACTAGTCGATTCACTACTGTTGATGGAGAAACTTTATACCATTTTCTGTCTGTATCAAGTTTCGCCGAGTACACTGTTGTAGACATTGCTAATGTAACGAAGATCGATCCTCGTGTTCCACCTAACAGGGCATGCCTCTTTAGTTGTGGAGTCTCAACAGGTTAGTTTCTGACCCCGTCTAAATTCCCTTTTAGACTTAATGTCATTTCAGTTTCAACTTCTTAACAGCCGCGGTGCTTAAATCATCATACAAAATTGTTTTCCGTAATCTTATTCATCAGATGTCTCAGAGGAAATCGATAGACGAATACAAATTTATCTAACTCTCTTTAGAAGTTCGAATAAGTTCAAGTCTGATATTATGTAAGATGAGCTCAGGAGTAGGTGCTGCCCTGAAAACTGCAAACGTGGAACAAGGATCGACTGTTGTGATATTTGGTTTGGGCGGAATTGGATTAGCAGTATGTTTCTCTTCTGATTCTTCTTGCTTATATTGGTAGACGAGTTAGTGCCGGTGGGTTTATATGCTTACGTTACGTCTCATAGGTTGCAGAGGGAGCGAGGATATGTGGTGCTTCAAGAATTATTGGCGTAGATATAAACACTGACAAGTTCGAAATAGGTGAACTTTCTTCTTCATTCTTCCCAATTCGTTTCGTTCTCTGTTTGTTTGCTACTAGAAACTAACAATACTCTTCTGCGTTTCCCGTGTCCTCCGTGCTCTTTTCTTTTCACATTTGACTCAGGGAAGCAATTTGGAGTGACTGA-TTTTGTCGATTCGAATAGCTATGGGGATAAACCTATTAGCCAGGTCGGTTTTTTTATTGCTCGGCTTGATATTTGATGCTCCAAAAACTGTCACCTATCGTTCTAGATTGATAACATGATATTTCAAGTAAAAATCTTGCCAATTTTTAATCGTTCAAGTAGCACGAATCATTTCTATATTTTGCTCAGCGTATGGCATGGATCGTTATATTCCATGCCCAATTTTACGTTCCTCTCATTTCTAGTGCTTACGGATTATTAGATCCTCTCATGCCGATGATGATCACATTTCCTTTTGGCCCTTTTTTGACCAGGTGATAAATGAGATGACTAACGGAGGTGCTGACTACTGCTTCGAGTGTGTTGGTATG</genome_strand>
        <mrna_strand>TGGAAAACCAATTCACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCAGTGGCAAGAAAAGCAGGAGAACCTCTGGTGATAGAGGAAGTGATTGTGGCTCCTCCTAAAGCCTGTGAAGTTCGTATAAAAATCGTTTGTACTTCTCTCTGTCACAGTGATGTTACCTTCTGGAAGTTGAAA..........................................................................................................GACTTCCCTGGATGCTTTCCAAGAATATTGGGACACGAAGCTTTCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGTGGAGAGTGTTGGAGAAAATGTCCAGGATTTAAAAGAAGGAGATTCAGTTATCCCGATATTTTTGCCCGACTGTACTGAATGTATAGATTGCACATCCAAGAAGAGCAACAGTTGTTCACAATTCCAATTTAAGGTATCTCCGTGGATGCTTAGAGATGGTACTAGTCGATTCACTACTGTTGATGGAGAAACTTTATACCATTTTCTGTCTGTATCAAGTTTCGCCGAGTACACTGTTGTAGACATTGCTAATGTAACGAAGATCGATCCTCGTGTTCCACCTAACAGGGCATGCCTCTTTAGTTGTGGAGTCTCAACAG..........................................................................................................................................................................................................................GAGTAGGTGCTGCCCTGAAAACTGCAAACGTGGAACAAGGATCGACTGTTGTGATATTTGGTTTGGGCGGAATTGGATTAGCA.....................................................................................GTTGCAGAGGGAGCGAGGATATGTGGTGCTTCAAGAATTATTGGCGTAGATATAAACACTGACAAGTTCGAAATAG............................................................................................................................GGAAGCAATTTGGAGTGACTGATTTTTGTCGATTCGAATAGCTATGGGGATAAACCTATTAGCCAG...............................................................................................................................................................................................................................................................................GTGATAAATGAGATGACTAACGGAGGTGCTGACTACTGCTTCGAGTGTGTTGGTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E327770" ref_strand="+" ref_description="SGN-E327770 [cTOC-20-D7]">
      <seq>aagaattgaaaatacaaacacaccacacaccctccattagagtttaagtttttttttttaagcttttaacaatggctgccacacaagctgagttgagcaaaactgctggaaaaccaattcactgcagagcggcagtggcaagaaaagcaggagaacctctggtgatagaggaagtgattgtggctcctcctaaagcctgtgaagttcgtataaaaatcgtttgtacttctctctgtcacagtgatgttaccttctggaagttgaaagacttccctggatgctttccaagaatattgggacacgaagctttcgggattgtggagagtgttggagaaaatgtccaggatttaaaagaaggagattcagttatcccgatatttttgcccgactgtactgaatgtatagattgcacatccaagaagagcaacagttgttcacaattccaatttaaggtatctccgtggatgcttagagatggtactagtcgattcactactgttgatggagaaactttataccattttctgtctgtatcaagtttcgccgagtacactgttgtagacattgctaatgtaacgaagatcgatcctcgtgttccacctaacagggcatggcctctttagttgtggagtctcaacaggagtaggtgctgccctgaaaactgcaaacgtggaacaaggatcgactggtgtgatatttggtttgggcggaattggattagcagttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="90610" stop="87543"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90310" g_stop="90181" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90180" i_stop="89525" i_length="656">
            <donor d_prob="0.581" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89524" g_stop="89388" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="266" r_length="137" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89387" i_stop="89282" i_length="106">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89281" g_stop="89235" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="313" r_length="47" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89234" i_stop="88475" i_length="760">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88474" g_stop="88149" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="640" r_length="327" r_score="0.994"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="88148" i_stop="87931" i_length="218">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="87930" g_stop="87848" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="723" r_length="83" r_score="0.988"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="87847" i_stop="87763" i_length="85">
            <donor d_prob="0.933" d_score="0.98"/>
            <acceptor a_prob="0.821" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="87762" g_stop="87758" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="724" r_stop="728" r_length="5" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E327770" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>728</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E327770" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90310" e_stop="90181"/>
          <exon e_start="89524" e_stop="89388"/>
          <exon e_start="89281" e_stop="89235"/>
          <exon e_start="88474" e_stop="88149"/>
          <exon e_start="87930" e_stop="87848"/>
          <exon e_start="87762" e_stop="87758"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAATTGAAAATACAAACACACCACACACCCTCCATTAGAGTTTAAGTTTTTTTTTTTTAAGCTTTTAACAATGGCTGCCACACAAGCTGAGTTGAGCAAAACTGCTGGAAAACCAATTCACTGCAGAGGTACTCTTCAGAAACTCCCTCCCCCCACCCCCCACCCCACCACCACAAGTTTTGTCCCCATCTTTTCAAAATCAAATCTTTAAAGAATCTTTGATTATAATTAGCTATGAAAACAATGTTGATTCTTTATGTGGATCTTGAATTGGCTATGTTTTGTAAGCAAAGGTTGAATCTTTGAGGAATCTTGAAATTGGGGTAGGAGTAGTAATGGAGCTAGGATATTTTTCACTAAAGGGAATTGAAAAAAATAAAGAAGTTGAGATATACAAATTAAAATTATAATCTTATATATACAGTGTAATTTTATGACGAAGTGATTACGAATGAACCCCTTTGCCCCCTAACTTGACCATAGTAAGAGGTAATTGTTGTTGAGTCTCACATTGGTGCTTTAAGGGATTTGAGGTCTCTTTATATGGTCTTTGGTAATCGTCGAGATATAGCTTGTGGGGTTGAGTTAGGTTCATTTAACGGCTAAGGAATATGAGTAAATTTGAGTAATTTTAGTTGGTTTGTCAGCCTATGGAAAAGTTCTTTGTTCTTTATATGGATCAAAGGTTGAATCTTTTGACGAATCTTGAAAAGGGGTATGAGGAATTTGTCAGTTCTGTTTTATTTTGTGAAAAAACCCGCGTAATTGTGAGTTACATTTGCAGCGGCAGTGGCAAGAAAAGCAGGAGAACCTCTGGTGATAGAGGAAGTGATTGTGGCTCCTCCTAAAGCCTGTGAAGTTCGTATAAAAATCGTTTGTACTTCTCTCTGTCACAGTGATGTTACCTTCTGGAAGTTGAAAGTATGTAATTTTGTGCTAATAAAAGTTGCAAAAATTTGATCTTTTTACTGAAGAAAGTGTCTGTTTAACTTGTTTTTGAATAATCAGATTCTTGGTTTTCCTTTAGGACTTCCCTGGATGCTTTCCAAGAATATTGGGACACGAAGCTTTCGGGTACTTTTAGTATATTCCCCTATCAAGTTCATTTATCTGTTGTAAATATTTTTAAAGAATACTTGATTGGTAGTACATGTTACTCCCTTCGTTTCGATTCAAGTATCTTACTTTTCGTCTGCTATTATAAAGAGTGTCTCTATCTATATTTGGTGCATTTTTTTCTGCATAGCACGTCTAAGACAAAGATTCAAAGCGCATTTAGTACTTTACACACCTTTAGTTTAAGACCATGGGATTCGAAAAGTCTTCTTTATTTTCTGAAACTCCATGCCTAGTCAAACTAAGACACCTAAATGGAAATGGAGGGTCAGCTCGTTATTTGTTCTATTGTTGAAAGTCACTGCATATCCCTTTTCACCAGTCTCTAATTTCAATGCAGATTTATTTTAGCTCACGTTTGGAATAATCGAGTTTTAGTTTGTAACTCCTTACGAATTTCATTTAGCGCTAGCCACTTATCGTAAAGCCATTAGGCTATGTCTTTAAGTCAAACATGCATGCTTTAAAGAAACAACTGTGCATTGATGATGGCGTGGTTATTCTTAAGCTTGCGTTTTTGTGAGATTAAGATTTTGTTCTCTGAAAGTTCATTTTCCTCTAGTACTTTTAGTGTAATATGTAAAGCGTTCCTTTTGTTATCCTCAAGAACTTTACCGTCAATTGAGTCTTAATATTTGAATTGCTTTTTCCTTGTACCTGTAATTTTTGCATCAGTGCATGAACACGCACTTTCCTTATCGCATGTTATTCACTGAAGGATTGTGGAGAGTGTTGGAGAAAATGTCCAGGATTTAAAAGAAGGAGATTCAGTTATCCCGATATTTTTGCCCGACTGTACTGAATGTATAGATTGCACATCCAAGAAGAGCAACAGTTGTTCACAATTCCAATTTAAGGTATCTCCGTGGATGCTTAGAGATGGTACTAGTCGATTCACTACTGTTGATGGAGAAACTTTATACCATTTTCTGTCTGTATCAAGTTTCGCCGAGTACACTGTTGTAGACATTGCTAATGTAACGAAGATCGATCCTCGTGTTCCACCTAACAGGGCAT-GCCTCTTTAGTTGTGGAGTCTCAACAGGTTAGTTTCTGACCCCGTCTAAATTCCCTTTTAGACTTAATGTCATTTCAGTTTCAACTTCTTAACAGCCGCGGTGCTTAAATCATCATACAAAATTGTTTTCCGTAATCTTATTCATCAGATGTCTCAGAGGAAATCGATAGACGAATACAAATTTATCTAACTCTCTTTAGAAGTTCGAATAAGTTCAAGTCTGATATTATGTAAGATGAGCTCAGGAGTAGGTGCTGCCCTGAAAACTGCAAACGTGGAACAAGGATCGACTGTTGTGATATTTGGTTTGGGCGGAATTGGATTAGCAGTATGTTTCTCTTCTGATTCTTCTTGCTTATATTGGTAGACGAGTTAGTGCCGGTGGGTTTATATGCTTACGTTACGTCTCATAGGTTGC</genome_strand>
        <mrna_strand>AAGAATTGAAAATACAAACACACCACACACCCTCCATTAGAGTTTAAG-TTTTTTTTTTTAAGCTTTTAACAATGGCTGCCACACAAGCTGAGTTGAGCAAAACTGCTGGAAAACCAATTCACTGCAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCAGTGGCAAGAAAAGCAGGAGAACCTCTGGTGATAGAGGAAGTGATTGTGGCTCCTCCTAAAGCCTGTGAAGTTCGTATAAAAATCGTTTGTACTTCTCTCTGTCACAGTGATGTTACCTTCTGGAAGTTGAAA..........................................................................................................GACTTCCCTGGATGCTTTCCAAGAATATTGGGACACGAAGCTTTCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGTGGAGAGTGTTGGAGAAAATGTCCAGGATTTAAAAGAAGGAGATTCAGTTATCCCGATATTTTTGCCCGACTGTACTGAATGTATAGATTGCACATCCAAGAAGAGCAACAGTTGTTCACAATTCCAATTTAAGGTATCTCCGTGGATGCTTAGAGATGGTACTAGTCGATTCACTACTGTTGATGGAGAAACTTTATACCATTTTCTGTCTGTATCAAGTTTCGCCGAGTACACTGTTGTAGACATTGCTAATGTAACGAAGATCGATCCTCGTGTTCCACCTAACAGGGCATGGCCTCTTTAGTTGTGGAGTCTCAACAG..........................................................................................................................................................................................................................GAGTAGGTGCTGCCCTGAAAACTGCAAACGTGGAACAAGGATCGACTGGTGTGATATTTGGTTTGGGCGGAATTGGATTAGCA.....................................................................................GTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E687876" ref_strand="+" ref_description="SGN-E687876 [T3_tus_81_H02]">
      <seq>taagaattgaaaatacaaacacaccacacaccctccattagagtttaagtttttttttttaagcttttaacaatggctgccacacaagctgagttgagcaaaactgctggaaaaccaattcactgcaaagcggcagtggcaaaaaaagcaggaaaacctctggtgataaaggaagtgattgtggctcctcctaaagccggtgaagttcgtataaaaatcgtttgtacttctctctgtcacagtgatgttaccttctggaagttgaaaaacttccctggatgctttccaagaatattgggacacgaagctttcgggattgtggagagtgttggaaaaaatgtccaggatttaaaaaaaggaaattcagttatcccgatttttttgcccgactgtactgaatgtatagatggcacatccaaaaaaagcaacagttgttcacaattccaatttaaggtatctccgtggatgcttagagatggtactagtcgattcactactgttgatggagaaactttataccattttctgtctgtatcaagtttcgccaagtacactgttgtagactttgctaatgtaacgaaaatcgatcctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="90611" stop="87896"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90311" g_stop="90181" g_length="131"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90180" i_stop="89525" i_length="656">
            <donor d_prob="0.581" d_score="0.98"/>
            <acceptor a_prob="0.969" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89524" g_stop="89388" g_length="137"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="267" r_length="137" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89387" i_stop="89282" i_length="106">
            <donor d_prob="0.803" d_score="1.00"/>
            <acceptor a_prob="0.973" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89281" g_stop="89235" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="314" r_length="47" r_score="0.979"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89234" i_stop="88475" i_length="760">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88474" g_stop="88196" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="593" r_length="279" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E687876" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E687876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90311" e_stop="90181"/>
          <exon e_start="89524" e_stop="89388"/>
          <exon e_start="89281" e_stop="89235"/>
          <exon e_start="88474" e_stop="88196"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGAATTGAAAATACAAACACACCACACACCCTCCATTAGAGTTTAAGTTTTTTTTTTTTAAGCTTTTAACAATGGCTGCCACACAAGCTGAGTTGAGCAAAACTGCTGGAAAACCAATTCACTGCAGAGGTACTCTTCAGAAACTCCCTCCCCCCACCCCCCACCCCACCACCACAAGTTTTGTCCCCATCTTTTCAAAATCAAATCTTTAAAGAATCTTTGATTATAATTAGCTATGAAAACAATGTTGATTCTTTATGTGGATCTTGAATTGGCTATGTTTTGTAAGCAAAGGTTGAATCTTTGAGGAATCTTGAAATTGGGGTAGGAGTAGTAATGGAGCTAGGATATTTTTCACTAAAGGGAATTGAAAAAAATAAAGAAGTTGAGATATACAAATTAAAATTATAATCTTATATATACAGTGTAATTTTATGACGAAGTGATTACGAATGAACCCCTTTGCCCCCTAACTTGACCATAGTAAGAGGTAATTGTTGTTGAGTCTCACATTGGTGCTTTAAGGGATTTGAGGTCTCTTTATATGGTCTTTGGTAATCGTCGAGATATAGCTTGTGGGGTTGAGTTAGGTTCATTTAACGGCTAAGGAATATGAGTAAATTTGAGTAATTTTAGTTGGTTTGTCAGCCTATGGAAAAGTTCTTTGTTCTTTATATGGATCAAAGGTTGAATCTTTTGACGAATCTTGAAAAGGGGTATGAGGAATTTGTCAGTTCTGTTTTATTTTGTGAAAAAACCCGCGTAATTGTGAGTTACATTTGCAGCGGCAGTGGCAAGAAAAGCAGGAGAACCTCTGGTGATAGAGGAAGTGATTGTGGCTCCTCCTAAAGCCTGTGAAGTTCGTATAAAAATCGTTTGTACTTCTCTCTGTCACAGTGATGTTACCTTCTGGAAGTTGAAAGTATGTAATTTTGTGCTAATAAAAGTTGCAAAAATTTGATCTTTTTACTGAAGAAAGTGTCTGTTTAACTTGTTTTTGAATAATCAGATTCTTGGTTTTCCTTTAGGACTTCCCTGGATGCTTTCCAAGAATATTGGGACACGAAGCTTTCGGGTACTTTTAGTATATTCCCCTATCAAGTTCATTTATCTGTTGTAAATATTTTTAAAGAATACTTGATTGGTAGTACATGTTACTCCCTTCGTTTCGATTCAAGTATCTTACTTTTCGTCTGCTATTATAAAGAGTGTCTCTATCTATATTTGGTGCATTTTTTTCTGCATAGCACGTCTAAGACAAAGATTCAAAGCGCATTTAGTACTTTACACACCTTTAGTTTAAGACCATGGGATTCGAAAAGTCTTCTTTATTTTCTGAAACTCCATGCCTAGTCAAACTAAGACACCTAAATGGAAATGGAGGGTCAGCTCGTTATTTGTTCTATTGTTGAAAGTCACTGCATATCCCTTTTCACCAGTCTCTAATTTCAATGCAGATTTATTTTAGCTCACGTTTGGAATAATCGAGTTTTAGTTTGTAACTCCTTACGAATTTCATTTAGCGCTAGCCACTTATCGTAAAGCCATTAGGCTATGTCTTTAAGTCAAACATGCATGCTTTAAAGAAACAACTGTGCATTGATGATGGCGTGGTTATTCTTAAGCTTGCGTTTTTGTGAGATTAAGATTTTGTTCTCTGAAAGTTCATTTTCCTCTAGTACTTTTAGTGTAATATGTAAAGCGTTCCTTTTGTTATCCTCAAGAACTTTACCGTCAATTGAGTCTTAATATTTGAATTGCTTTTTCCTTGTACCTGTAATTTTTGCATCAGTGCATGAACACGCACTTTCCTTATCGCATGTTATTCACTGAAGGATTGTGGAGAGTGTTGGAGAAAATGTCCAGGATTTAAAAGAAGGAGATTCAGTTATCCCGATATTTTTGCCCGACTGTACTGAATGTATAGATTGCACATCCAAGAAGAGCAACAGTTGTTCACAATTCCAATTTAAGGTATCTCCGTGGATGCTTAGAGATGGTACTAGTCGATTCACTACTGTTGATGGAGAAACTTTATACCATTTTCTGTCTGTATCAAGTTTCGCCGAGTACACTGTTGTAGACATTGCTAATGTAACGAAGATCGATCCTCG</genome_strand>
        <mrna_strand>TAAGAATTGAAAATACAAACACACCACACACCCTCCATTAGAGTTTAAG-TTTTTTTTTTTAAGCTTTTAACAATGGCTGCCACACAAGCTGAGTTGAGCAAAACTGCTGGAAAACCAATTCACTGCAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCAGTGGCAAAAAAAGCAGGAAAACCTCTGGTGATAAAGGAAGTGATTGTGGCTCCTCCTAAAGCCGGTGAAGTTCGTATAAAAATCGTTTGTACTTCTCTCTGTCACAGTGATGTTACCTTCTGGAAGTTGAAA..........................................................................................................AACTTCCCTGGATGCTTTCCAAGAATATTGGGACACGAAGCTTTCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGTGGAGAGTGTTGGAAAAAATGTCCAGGATTTAAAAAAAGGAAATTCAGTTATCCCGATTTTTTTGCCCGACTGTACTGAATGTATAGATGGCACATCCAAAAAAAGCAACAGTTGTTCACAATTCCAATTTAAGGTATCTCCGTGGATGCTTAGAGATGGTACTAGTCGATTCACTACTGTTGATGGAGAAACTTTATACCATTTTCTGTCTGTATCAAGTTTCGCCAAGTACACTGTTGTAGACTTTGCTAATGTAACGAAAATCGATCCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E342849" ref_strand="+" ref_description="SGN-E342849 [cTOF-7-H2]">
      <seq>tctctctttcttcttctaaccccccacccccctttctccccccacccccacaccaccggaggcataaaccctaactctactccgatggctttagccggcggctatgcaaattctaagttaatccaaaacgacgctgccgtggcgccaccaaaacctttgtcatcttctgtaatcgaacgatataagtcggcgttgaaggagagggaaatagaaattagggcttctatgcagggaggtgatgatgatgttatcgtgttgcctccgtctatgaatgagattgttaggctttatgaaatgttgttgtcggaactggcttttaattctaagcctatcattactgaccttaccatcattgctggcgaacagagagaacatggtgaaggcattgctcatgcgatttgtaatcggattttagaggtcccagttgagcagaaactacctgcattataccttctggatagtgttgtaaaaaatattggcaaggactacatcaagcatttctctgcccatttacctgaggttttctgtgaggcatataggcaagtgcaccctagcatgcatcctgcaatgcgccacctctttgggacatggtcaactgtgttcccagcacctgttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="114366" stop="111227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114066" g_stop="113650" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="113649" i_stop="111805" i_length="1845">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111804" g_stop="111703" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="418" r_stop="519" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="111702" i_stop="111625" i_length="78">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="111624" g_stop="111527" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="617" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E342849" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E342849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114066" e_stop="113650"/>
          <exon e_start="111804" e_stop="111703"/>
          <exon e_start="111624" e_stop="111527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTTTCTTCTTCTAACCCCCCACCCCCCTTTCTCCCCCCACCCCCACACCACCGGAGGCATAAACCCTAACTCTACTCCGATGGCTTTAGCCGGCGGCTATGCAAATTCTAAGTTAATCCAAAACGACGCTGCCGTGGCGCCACCAAAACCTTTGTCATCTTCTGTAATCGAACGATATAAGTCGGCGTTGAAGGAGAGGGAAATAGAAATTAGGGCTTCTATGCAGGGAGGTGATGATGATGTTATCGTGTTGCCTCCGTCTATGAATGAGATTGTTAGGCTTTATGAAATGTTGTTGTCGGAACTGGCTTTTAATTCTAAGCCTATCATTACTGACCTTACCATCATTGCTGGCGAACAGAGAGAACATGGTGAAGGCATTGCTCATGCGATTTGTAATCGGATTTTAGAGGTATTGTTTTACAGTGTTCTGTTTTCTTAGGGTTTATGGAATGCTGCTTACAAACAAAGTTAATCCTAGCCGTTTCAATTCCCATTTTTCAATCTGATTATCTTAAAGAAGTGGTTTCTTTTGTTCTGATGTAAAAATGGTATTGCCTTTGCTTTTTCTACGTGGAATTCTATCATTTTGAAGTGTATTGAAGTTTCAGGATGAACTGTATTGTTTAAGGAGTGTTGATTCTTGTGCATTGTGTTGATTACTGTAGTGGTGAATTGTTAATCTTGTAACTGTTAAAATTTTTTGTGGAAATGCTGTTTTTTTAGTTTGGTTTATTGCATTGTCGGGGGTATTCTCTTATAGGTATCAAAAGTTGAATGCTACATTTTAAGTCCAAGTATTCTGTGAATTCTGGTATGAAAATGTGGCATTTTATGGTATGGGAGTCCTTGGCAATAAGCAATTGAAATGAACTTAGATGCTTTAAGCTAATCTCCATGACAAACACGTGTGTAACTGAATGAAGCAGTTCCAAAGTCTGGGATCTTATACTTATCATGATTCAGCTGTTCTTGCAGAATTTTATGTTGTAAGGAGCTTGTGAAAACTCTTACACTCATTTCTTCTGAATCTGAAATGTAAAGTTAGAAGAAGTATACTGTGAGCGACTGACACTCAAAATTATAGATTATATCGGGCATGGACAAATATGGATTCAAATTAGCGAGTTAAAGTAATACATTCATAATATTCCAGTCCTCTTGATTTGGTCTCCTTAAATTGTTTCATCTTTTTATTTTTCTTTGTTTGGGCTGCTGGTGGCTAAGTTTGGTGTGGTAGTTTGTGGTTGAGTAATAGTGTTGGATTCATCATCTCCATATGTGCTTTTAGATGAAGTTAAAGATTAGGGTGTTTCTCCTTCTAAAACAATAGAATGATGAAAGGTGCTTCCATATCCAATAGTCAAGCGTCATGTGGTTGATGTTACAATGCGAACGGAATATACTTACTTTTATGATTAGTATTGCTGTAACACAAATTACCCTTTGAAGCTTACTGATTCTTAGAAACTGGGCAGCAGATGTAGAAAAGTTTGTAGTCGTGCTCCTTTTGCTTGATCAATTTCTTCCCTGTGTAAATGAACAGAATACTTGTATAATAGATGGTGGGGAAGTTTGTCCTTTGTTTGCTGTGGTGCATAGATTTGATATATTCTTACATAGAAGAGTTCAAGAGAAATATATCATGGAAGAGTAGTTTGGTTACAGTTGATGCTTTTTCAATAGGTGAGTTGTATGAAGAAAAAGGAATTCCTGGGATTGCATGCAGCATGCCAAGTGTTATTCCTCTTAGAATGAACTGAAAAGAACTAAAGAAATATTCAAAACTTTATGAGATATAGAGAAAATCATCATGGAACTACTCCCCTACTTAGTTTGAAATTATCTAGTTTACAGTGGCTTGAGTTTTATAAGGATTATGGCTGAAAAGATAGCCATCTCTTTATTCGTTTTGATAATTATTTTGTTCACAGGGGTTTGTTGTTTTAAGGATTACTGTTGAAGTGTTTTCGGTCACGCATCGCCTGTGACATAAGCAGGATAAAACAGATGAGGCGCTGCCAAGTATAGCTAAAAACCACTTGATAGTGAAACTATTGATCACTTGTAGTAACTGTTTAGGTTAAGCTAAATCTGACCAATACTTATTCAGATTTTTATGCTTACAAGTAGAGTCTCGGTCTTTCTTATTTTTTTATTTGTCAGGGGAACTGGTAATCTTTTGTTCTTAGCATGCCATTTTGATGTATTTATTACCCATATTTTTCTGCATTCTCATATTATTCTCTTTTTTTAGGTCCCAGTTGAGCAGAAACTACCTGCATTATACCTTCTGGATAGTGTTGTAAAAAATATTGGCAAGGACTACATCAAGCATTTCTCTGCCCATTTACCTGAGGTGAGTAGTTTTATATGGTATTTGCATGACTGCTATGATGTTATACCACTTTATATGATTTTCTTTCTCTTTTCCAAGGTTTTCTGTGAGGCATATAGGCAAGTGCACCCTAGCATGCATCCTGCAATGCGCCACCTCTTTGGGACATGGTCAACTGTGTTCCCAGCACCTGTTCT</genome_strand>
        <mrna_strand>TCTCTCTTTCTTCTTCTAACCCCCCACCCCCCTTTCTCCCCCCACCCCCACACCACCGGAGGCATAAACCCTAACTCTACTCCGATGGCTTTAGCCGGCGGCTATGCAAATTCTAAGTTAATCCAAAACGACGCTGCCGTGGCGCCACCAAAACCTTTGTCATCTTCTGTAATCGAACGATATAAGTCGGCGTTGAAGGAGAGGGAAATAGAAATTAGGGCTTCTATGCAGGGAGGTGATGATGATGTTATCGTGTTGCCTCCGTCTATGAATGAGATTGTTAGGCTTTATGAAATGTTGTTGTCGGAACTGGCTTTTAATTCTAAGCCTATCATTACTGACCTTACCATCATTGCTGGCGAACAGAGAGAACATGGTGAAGGCATTGCTCATGCGATTTGTAATCGGATTTTAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCAGTTGAGCAGAAACTACCTGCATTATACCTTCTGGATAGTGTTGTAAAAAATATTGGCAAGGACTACATCAAGCATTTCTCTGCCCATTTACCTGAG..............................................................................GTTTTCTGTGAGGCATATAGGCAAGTGCACCCTAGCATGCATCCTGCAATGCGCCACCTCTTTGGGACATGGTCAACTGTGTTCCCAGCACCTGTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E209683" ref_strand="+" ref_description="SGN-E209683 [cLEC-54-L6]">
      <seq>taatgaactaaattcccaaatgagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgttgtaaccaagggttatggtaactataaatgctgcatgttaaggatattagttgattttatgatattgcttaatacatactgttccctattttgagttggccgatgatatctactcagtacccgtggtttgtactgacccctacttttatgtttatcttcttgttatttgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="119703" stop="118867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119403" g_stop="119167" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E209683" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E209683" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119403" e_stop="119167"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATTGTTTTCTTCTTGTTTATTTGTG</genome_strand>
        <mrna_strand>TAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTATAAATGCTGCATGTTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTCCCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGGTTTGTACTGACCCCTACTTTTATGTTTATCTTCTTG-TTATTTGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E242359" ref_strand="+" ref_description="SGN-E242359 [cLEE-3-K21]">
      <seq>cctaatctactttgttaataatgatgccttggtataaaagaaggcttgatgaacgaaagtggtgagattaggggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgccacgttccggtaccaggatagaatatggatcgggtgtcacgttccgacaccaggatagaatatggatcgggtgtcacgttctgacaccaggatagaatatggatcgggtgccacgttccggtgccaggatagtatattgaggagtggagtgtcacgtaaggacacgaggggaataaatatgatgaatcttgaaatatgttaatatatgcaatccaatgaactaaattcccaaataagtatgatgaggaggtgtgagtcctcattgatgtgcttggtgatgcaaccaagggttatggtaattgcaaatgctgcatgctaaggatattagttaattttatgatattgcttaatacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="120112" stop="118959"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="119812" g_stop="119523" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="119522" i_stop="119485" i_length="38">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.90"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="119484" g_stop="119259" g_length="226"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="515" r_length="226" r_score="0.942"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E242359" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>516</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242359" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="119812" e_stop="119523"/>
          <exon e_start="119484" e_stop="119259"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGAGTGTTACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATGAGGATCGAAGTGTCACGTTCCGACACCAGGATAGTATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGAGAATAAATATAATGAATCTTGAAATATGTTAATATATCCAATCTAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACT</genome_strand>
        <mrna_strand>CCTAATCTACTTTGTTAATAATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGG-GTGTCACGTTCTGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTGCCAGGATAG......................................TATATTGAGGAGTGGAGTGTCACGTAAGGACACGAGGGGAATAAATATGATGAATCTTGAAATATGTTAATATATGCAATCCAATGAACTAAATTCCCAAATAAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGATGCAACCAAGGGTTATGGTAATTGCAAATGCTGCATGCTAAGGATATTAGTTAATTTTATGATATTGCTTAATACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E206250" ref_strand="+" ref_description="SGN-E206250 [cLEC-29-L2]">
      <seq>acgaatttgctacttgcatagaaatctccaattgtcagttggattcaagatgagtaatggagatgtatacctttttcatagtgctactacacatacaatattaaaagaaaagaaaagaaatacttttctaatttggttatgaaaatgacatatgtcaacacaatatcaggtagtacaaaattaattgagagctctggaagagcgaccttattacaacctggagagacaatattggacatttgtaatgcattataccgtagtaagtcacaaagaaacttattaagtttcagagtaattcgccaaaatggctatcacgttgagacgactaatgaaggaaaggatgaatgcctttacattactacaattaatgtacagaagaaaattgtgcatgaaaaattacgtgcattttcttctaggttctactatacaagtgtaagtacagttgaatcacatgtcgtagtaaacaaaaggtttactaattttaatgattctattatttggtatgaccggttgggccatcccggatttaatatgatgcacagaatcattgagaattcacgtgggcacacctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="131780" stop="132946"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132080" g_stop="132646" g_length="567"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="572" r_length="572" r_score="0.905"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E206250" ref_strand="+">
        <total_alignment_score>0.905</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132080" e_stop="132646"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAAGTTGCTACTTGCAAAGAAATCCCCAGTTGTCAGTTGGATTCAAGATGAGTAATGGAGATGTATGCCTTCTTGATAGTGCTACAACGCATACAATATT---A-AAA-GAAAAGAAATACTTTTCTAATTTGGTTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGATAGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATGACCGGTTGGGCCATCCTGGATTTAATATGATGCGCAAAATCATTGAGAATTCACATGGACACACCTT</genome_strand>
        <mrna_strand>ACGAATTTGCTACTTGCATAGAAATCTCCAATTGTCAGTTGGATTCAAGATGAGTAATGGAGATGTATACCTTTTTCATAGTGCTACTACACATACAATATTAAAAGAAAAGAAAAGAAATACTTTTCTAATTTGGTTATGAAAATGACATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGAGCTCTGGAAGAGCGACCTTATTACAACCTGGAGAGACAATATTGGACATTTGTAATGCATTATACCGTAGTAAGTCACAAAGAAACTTATTAAGTTTCAGAGTAATTCGCCAAAATGGCTATCACGTTGAGACGACTAATGAAGGAAAGGATGAATGCCTTTACATTACTACAATTAATGTACAGAAGAAAATTGTGCATGAAAAATTACGTGCATTTTCTTCTAGGTTCTACTATACAAGTGTAAGTACAGTTGAATCACATGTCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTCTATTATTTGGTATGACCGGTTGGGCCATCCCGGATTTAATATGATGCACAGAATCATTGAGAATTCACGTGGGCACACCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E332350" ref_strand="+" ref_description="SGN-E332350 [cTOD-17-L10]">
      <seq>ttttctaatttggttatgaaaatggcatatgtcaacacaaaattaattgagggctctggaagagcgaccttattactacctggagggacaatattaagcattgataatgcattatattgtagtaagtctcaaagaaacttattaagtttcaaagttattcgccaaaatggctatcatgttgagacggctaatgaaggaaaggttgaatacctttacattactacaattaatgttgagaagaaaattgtgcatgaaaaattacctgcattttcttctgggttgtactatacaagtataagtacagttgaatcacatgccgtagtaaacaaaaggtttactaattttaatgattttatcatttggcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="131898" stop="132879"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132211" g_stop="132579" g_length="369"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="367" r_length="367" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E332350" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>369</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E332350" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132211" e_stop="132579"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGATAGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATG</genome_strand>
        <mrna_strand>TTTTCTAATTTGGTTATGAAAATGGCATAT--GTCAACACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGACGGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E331947" ref_strand="+" ref_description="SGN-E331947 [cTOD-16-G12]">
      <seq>aaataatgcaacaatatgaagattttgagccaaaatctgttcacgaatgtagacagagaaatgattggccaaaatggaaggatgcaattcaagctgaattggcttcactagaaatacgtgaagtttttggaccgataatccgaacacctgaaggtatcaagccagtggggtacaaatgggtttttgtacggaaaagaaatgagaaagatgaagtcatgagatataaggcccgactcgttgctcaaggtttttctcaaagacctggcattgattatatggagacatattctccagtggtagatgcaatcaccttcagatatctcataaatttggcagttcatgaaaaacttgaaatgcgtctaatggacgttgtcacagcctatctatatggctcattggaccacaacattttcatgaaaattcctgaagcattcaaagttcctgaagcatacaaagattcaagagaaacttgttcaataaaacttcagaaatctctgtatggattgaaacaatcaggaaggatgtggtacaatcgtctgagtgaatatttgttaaagaaagggtacaaaaatgacccgatttgtccctgcatttttattaaacggtcggggtctgaatttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="133657" stop="134967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133957" g_stop="134667" g_length="711"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="711" r_length="711" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E331947" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>711</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331947" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133957" e_stop="134667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAATGCAACAAGATGAAGATTTTGAGCCAAAATCTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATGGAAGGATGCAATTCAAGCTGAATTGGCTTCACTAGAAAAACGTGAAGTTTTTTGACCAATAATCCGAACACCTGAAGGTATCAAGCCAGTGGGGTACAAATAGGTTTTTGTATGAAAAAGAAATGAGAAAGGTGAAGTCATGAGATATAAGTCCCGACTCGTTGCTCAAGGTTTTTCTCAAAGACCTGGCATTGATTATATGGAGACATATTCTCTAGTGGTAGATGCAATCACCTTTAGATATCTCATAAATCTGGCAGTTCATGAAAAACTTGAAATGCGTCTAATGGACGTTGTCACAGCCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTGAAGCATTTAAAGTGCCTGAAACATACAAAGATTCAAGAGAAACTTGTTCAATAAAGCTTCAGAAATCTCTGTATGGACTGAAACAATCAGGAAGGATGTGGTACAATCGTTTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGACCCGATTTGTCCCTGCATTTTCATTAAACGGTTGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGAACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTTTCTGAAAAGAGAATTTG</genome_strand>
        <mrna_strand>AAATAATGCAACAATATGAAGATTTTGAGCCAAAATCTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATGGAAGGATGCAATTCAAGCTGAATTGGCTTCACTAGAAATACGTGAAGTTTTTGGACCGATAATCCGAACACCTGAAGGTATCAAGCCAGTGGGGTACAAATGGGTTTTTGTACGGAAAAGAAATGAGAAAGATGAAGTCATGAGATATAAGGCCCGACTCGTTGCTCAAGGTTTTTCTCAAAGACCTGGCATTGATTATATGGAGACATATTCTCCAGTGGTAGATGCAATCACCTTCAGATATCTCATAAATTTGGCAGTTCATGAAAAACTTGAAATGCGTCTAATGGACGTTGTCACAGCCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTGAAGCATTCAAAGTTCCTGAAGCATACAAAGATTCAAGAGAAACTTGTTCAATAAAACTTCAGAAATCTCTGTATGGATTGAAACAATCAGGAAGGATGTGGTACAATCGTCTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGACCCGATTTGTCCCTGCATTTTTATTAAACGGTCGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E205887" ref_strand="+" ref_description="SGN-E205887 [cLEC-20-D8]">
      <seq>cgatttgtccctgcatttttattaaacggtcggggtctgaatttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtacgccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaacactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="134233" stop="135470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134533" g_stop="135170" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="638" r_length="638" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E205887" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205887" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134533" e_stop="135170"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGATTTGTCCCTGCATTTTCATTAAACGGTTGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGAACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTTTCTGAAAAGAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAATAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACAAACAGGCTATTTGTTTACATGT</genome_strand>
        <mrna_strand>CGATTTGTCCCTGCATTTTTATTAAACGGTCGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACGCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAACACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E209835" ref_strand="+" ref_description="SGN-E209835 [cLEC-52-G1]">
      <seq>atttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="134273" stop="135500"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134573" g_stop="135200" g_length="628"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="628" r_length="628" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E209835" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209835" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134573" e_stop="135200"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGAACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTTTCTGAAAAGAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAATAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATG</genome_strand>
        <mrna_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E209830" ref_strand="+" ref_description="SGN-E209830 [cLEC-52-E1]">
      <seq>atttgtaataatagctgtgtatgttgatgatttgaacatcattggcactggtaaagagcttttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatgcaaatcagaactgattggttacgcagatgcaaggtatttatcagatccgcataaagcccgatcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="134273" stop="135448"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134573" g_stop="135148" g_length="576"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="576" r_length="576" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E209830" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134573" e_stop="135148"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGAACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTTTCTGAAAAGAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAATAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACA</genome_strand>
        <mrna_strand>ATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGCACTGGTAAAGAGCTTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATGCAAATCAGAACTGATTGGTTACGCAGATGCAAGGTATTTATCAGATCCGCATAAAGCCCGATCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E299938" ref_strand="+" ref_description="SGN-E299938 [cLEW-11-G21]">
      <seq>ctcgtgcccgtttagaagctattgagtgtctgaaaaaagaatttgaaatgaaagatctcggcaagacaaaattttgtcttggcctacagattgagaatttgtcaaatggaatacttgttcatcaatcaacgtacacagaaaagatactaaagcgtttttacatggataactcacatccattgagtaccccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaaccacactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatcccgcataaagcccgatcacaaacaggctatttgtttacatgtggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="134331" stop="135475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134623" g_stop="135175" g_length="553"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="554" r_length="554" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E299938" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>553</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134623" e_stop="135175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGAGCTTTTAGAAGCTGTTGAGTTTCTGAAAAGAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAATAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGAT-CCGCATAAAGCTCGATCACAAACAGGCTATTTGTTTACATGTGGAGA</genome_strand>
        <mrna_strand>CTCGTGCCCGTTTAGAAGCTATTGAGTGTCTGAAAAAAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGCCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACCCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACCACACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E211563" ref_strand="+" ref_description="SGN-E211563 [cLEC-67-I7]">
      <seq>ataactcacatccattgagtactccaatggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatgaagcaaacgttggtagccacttcttcaaatcatgcagaaataatagccatccatgaagcaagtcgagagtgcgtctggttgagatcaatgacccatcatattcaggaaatgtgtggtttttctttgaaaaagaatataccaaccataatgtacgaagataatgctgcatgtatagctcaattgaaaggaggatacatcaaaggagaccggacaaagcatatctcaccaaagttctttttcacgcatgatcttcaacaaaatgggtgagatagaagtncaacaaattcgttcaagtgataatcttgctgatttattcacaaaggcattgccaacatcancgtttgagaagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="134488" stop="135851"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134788" g_stop="135551" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="765" r_length="765" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E211563" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211563" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134788" e_stop="135551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAATAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACATTGGTAGCCACTTCTTCAAATCATGCAAAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATGAATGACCCATCATATTCAGAAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAAT-GGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACTAAGGCATTGCCAACATCAACATTTGAGAAGTTG</genome_strand>
        <mrna_strand>ATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCATAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGGTGAGATAGAAGTNCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACAAAGGCATTGCCAACATCANCGTTTGAGAAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E201786" ref_strand="+" ref_description="SGN-E201786 [cLEC-11-H5]">
      <seq>tggtggtaagatcgcttgacatcaatacagatccatttcgacctcaagagaatgatgaagagcttcttggtgatgaaactccttatcttagtgcgatcggggcactaatgtaccttgctaacaatactcgaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggtgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatgcagggtatttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatgaagcaaacgttggtagccacttcttcaaatcatgcagaaataatagccatccatgaagcaagtcgagagtgcgtctggttgagatcaatgacccatcatattcaggaaatgtgtggtttttctttgaaaaagaatataccacccttattgtccgaagataatgctgcatgtatagctcaattgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="134515" stop="135685"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134815" g_stop="135385" g_length="571"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="571" r_length="571" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E201786" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201786" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134815" e_stop="135385"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAATAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACATTGGTAGCCACTTCTTCAAATCATGCAAAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATGAATGACCCATCATATTCAGAAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAA</genome_strand>
        <mrna_strand>TGGTGGTAAGATCGCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAAGAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCACCCTTATTGTCCGAAGATAATGCTGCATGTATAGCTCAATTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E200850" ref_strand="+" ref_description="SGN-E200850 [cLEC-5-I1]">
      <seq>tttatcagatccgcataaagcccgatcacaaacaggctatttgtttacatgtggagacacggcaatatcttggcgatcaatgaagcaaacgttggtagccacttcttcaaatcatgcagaaataatagccatccatgaagcaagtcgagagtgcgtctggttgagatcaatgacccatcatattcaggaaatgtgtggtttttctttgaaaaagaatataccaaccacaatgcacgaagataatgctgcatgtatagctcaattgaaaggaggatacatcaaaggagaccggacaaagcatatctcaccaaagttctttttcacgcatgatctttaacaaaatggtgagatagaagttcaacaaattcgttcaagtgataatcttgctgatttattcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="134819" stop="135817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135119" g_stop="135517" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E200850" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135119" e_stop="135517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTATCAGATCCGCATAAAGCTCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACATTGGTAGCCACTTCTTCAAATCATGCAAAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATGAATGACCCATCATATTCAGAAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCAC</genome_strand>
        <mrna_strand>TTTATCAGATCCGCATAAAGCCCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACGTTGGTAGCCACTTCTTCAAATCATGCAGAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATCAATGACCCATCATATTCAGGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGCACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTTAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E351886" ref_strand="+" ref_description="SGN-E351886 [cTOS-8-D9]">
      <seq>ggaaatgtgtggtttttctttgaaaaagaatataccaaccacaatgtacgaagataatgctgcatgtatagctcaattgaaaggaggatacatcaaaggagaccggacaaagcatatctcaccaaagttctttttcacgcatgatcttcaacaaaatggtgagatagaagttcaacaaattcgttcaagtgataatcttgctgatttattcacaaaggcattgccaacatcaacgtttgagaagttgagatacaagattggaatgcgccgtctccaagatatcaagtaaagttttcatcagggggagtgaaatacgcgttgtactcttttccttaactatgggtttgtcccaagttgggttttcctggtaagggttttaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="+" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="135005" stop="135985"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135305" g_stop="135685" g_length="381"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="+" ref_id="SGN-E351886" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>381</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135305" e_stop="135685"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACTAAGGCATTGCCAACATCAACATTTGAGAAGTTGAGATACAAGATTGGAATGCGCCGTCTCCGAGATATCAAGTAAAGTTTTCATCAGGGGGAGCGAAATACGCGTTGTACTCTTTTCCTTAACTATGGTTTTGTCCCAAGTTAGGTTTTCCTGGTAAGGTTTTTAAT</genome_strand>
        <mrna_strand>GGAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACAAAGGCATTGCCAACATCAACGTTTGAGAAGTTGAGATACAAGATTGGAATGCGCCGTCTCCAAGATATCAAGTAAAGTTTTCATCAGGGGGAGTGAAATACGCGTTGTACTCTTTTCCTTAACTATGGGTTTGTCCCAAGTTGGGTTTTCCTGGTAAGGGTTTTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E550240" ref_strand="+" ref_description="SGN-E550240 [TUS-5-N18]">
      <seq>aaattctaaaaaatcctataaatacaaaacaaactaatagaaaattgttcgcgatcttcgtcgtctttttcaagatcctcacgagtagacaaagattttacatttgcgttctgaatttgaggaaggttttgcacaccaatgagtcttgtaaatgttcttaccctctttcttccctcattttagcagcggatcatacattatacactatttgttaagtaataaataaattaaaggatgaaaaatcaccagaaattggttgattaagatgaatacctctagtaagtctcttggattcagtcattggagagtaaatcataacggaaattgaaaaatacaaacaacatttttttaagatttaaacaaaaataaaattagaaaagaaatctgaaaataggataaagactagagataccttaatcaaagggattcttgttgattcaattttggattaaaaaaacaacgaaaatatatggcaaaaaaaatttgcaacttgaatgttggaggaaaatcagaaaagataaccataagagagagaaaaaattaaatgggagagagaattaacaatttgaaaagataaatatgagagagaatatattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="137352" stop="136171"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137068" g_stop="136470" g_length="599"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="597" r_length="597" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E550240" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>599</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E550240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137068" e_stop="136470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATTCTAAAAAAGAACTATAAATACAAAACAAACTAATAGAAAATTGTTCGCGATCTTCGTCGTCTTTTTCAAGATCCTCACGAGTAGACAAAGATTTTATATTTGCGTTTCTGAATTTGAGGAAGG-TTTGCACACCAATGAGTCTTATAAATGTTCTTACCCTCTTTCTTCCTTCATTTTAGCAGCGGATCATACATTATACACTATTTGTTAAGTAATAAATAAATTAAAGGATGAAAAATCACCAGAAATTGGTTGATTAAGATGAATACCTCTAGTAAGCCTCTTGGATTCAGCCATTGGAGAGTAAATCATAACGGAAATTGAAAAATACAAACAACATTTTTTTAAGATTTAAACAAAAATAAAATTAGAAAAGAAATCTGAAAATTGGATAAAGATTAGAGATACCTTAATCAAAGGGATTCTTGTTGATTCAATTTTGGATTAAAAAAACAACCAAAATATATGGCAAAAAAATATTTGCAACTTGAATGTTGGAGGAAAATCAGAAAAGATAACCATAAGAGAGAAAAAAAATTAAATGGGAGAGAGAATTAACAAATTGAAAATATAAATATGAGAGAGAATAATTTT</genome_strand>
        <mrna_strand>AAATTCTAAAAAA-TCCTATAAATACAAAACAAACTAATAGAAAATTGTTCGCGATCTTCGTCGTCTTTTTCAAGATCCTCACGAGTAGACAAAGATTTTACATTTGCG-TTCTGAATTTGAGGAAGGTTTTGCACACCAATGAGTCTTGTAAATGTTCTTACCCTCTTTCTTCCCTCATTTTAGCAGCGGATCATACATTATACACTATTTGTTAAGTAATAAATAAATTAAAGGATGAAAAATCACCAGAAATTGGTTGATTAAGATGAATACCTCTAGTAAGTCTCTTGGATTCAGTCATTGGAGAGTAAATCATAACGGAAATTGAAAAATACAAACAACATTTTTTTAAGATTTAAACAAAAATAAAATTAGAAAAGAAATCTGAAAATAGGATAAAGACTAGAGATACCTTAATCAAAGGGATTCTTGTTGATTCAATTTTGGATTAAAAAAACAACGAAAATATATGGCAAAAAAA-ATTTGCAACTTGAATGTTGGAGGAAAATCAGAAAAGATAACCATAAGAGAGAGAAAAAATTAAATGGGAGAGAGAATTAACAATTTGAAAAGATAAATATGAGAGAGAATATATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-8xgpYx/sgn_ests_tomato" ref_id="SGN-E389671" ref_strand="+" ref_description="SGN-E389671 [TUS-4-N18]">
      <seq>taaatacaaaacaaactaatagaaaattgttcgcgatcttcgtcgtctttttcaacatcctcacgagtagacaaagattttacatttgcgttctgaatttgaggaaggttttgcacaccaatgagtcttgtaaatgttcttaccctctttcttccctcattttagcagcggatcatacattatacactatttgttaagtaataaataaattaaaggatgaaaaatcaccagaaattggttgattaagatgaatacctctagtaagtctcttggattcagtcattggagagtaaatcataacggaaattgaaaaatacaaacaacatttttttaagatttaaacaaaaataaaattagaaaagaaatctgaaaataggataaagactagagataccttaatcaaagggattcttgttgattcaattttggattaaaaaaacaacgaaaatatatggcaaaaaaaatttgcaacttgaatgttggaggaaaatcagaaaagataaccataagagagagaaaaaattaaatgggagagagaattaacaatttgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0115G22-ly6s7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0115G22.1" temp_strand="-" temp_description="C12HBa0115G22.1  AC209587.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0115G22 upload_account_name:italy">
        <position start="137349" stop="136196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137049" g_stop="136496" g_length="554"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="553" r_length="553" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0115G22.1" gen_strand="-" ref_id="SGN-E389671" ref_strand="+">
        <total_alignment_score>0.973</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0115G22.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E389671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137049" e_stop="136496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATACAAAACAAACTAATAGAAAATTGTTCGCGATCTTCGTCGTCTTTTTCAAGATCCTCACGAGTAGACAAAGATTTTATATTTGCGTTTCTGAATTTGAGGAAGG-TTTGCACACCAATGAGTCTTATAAATGTTCTTACCCTCTTTCTTCCTTCATTTTAGCAGCGGATCATACATTATACACTATTTGTTAAGTAATAAATAAATTAAAGGATGAAAAATCACCAGAAATTGGTTGATTAAGATGAATACCTCTAGTAAGCCTCTTGGATTCAGCCATTGGAGAGTAAATCATAACGGAAATTGAAAAATACAAACAACATTTTTTTAAGATTTAAACAAAAATAAAATTAGAAAAGAAATCTGAAAATTGGATAAAGATTAGAGATACCTTAATCAAAGGGATTCTTGTTGATTCAATTTTGGATTAAAAAAACAACCAAAATATATGGCAAAAAAATATTTGCAACTTGAATGTTGGAGGAAAATCAGAAAAGATAACCATAAGAGAGAAAAAAAATTAAATGGGAGAGAGAATTAACAAATTGAAA</genome_strand>
        <mrna_strand>TAAATACAAAACAAACTAATAGAAAATTGTTCGCGATCTTCGTCGTCTTTTTCAACATCCTCACGAGTAGACAAAGATTTTACATTTGCG-TTCTGAATTTGAGGAAGGTTTTGCACACCAATGAGTCTTGTAAATGTTCTTACCCTCTTTCTTCCCTCATTTTAGCAGCGGATCATACATTATACACTATTTGTTAAGTAATAAATAAATTAAAGGATGAAAAATCACCAGAAATTGGTTGATTAAGATGAATACCTCTAGTAAGTCTCTTGGATTCAGTCATTGGAGAGTAAATCATAACGGAAATTGAAAAATACAAACAACATTTTTTTAAGATTTAAACAAAAATAAAATTAGAAAAGAAATCTGAAAATAGGATAAAGACTAGAGATACCTTAATCAAAGGGATTCTTGTTGATTCAATTTTGGATTAAAAAAACAACGAAAATATATGGCAAAAAAA-ATTTGCAACTTGAATGTTGGAGGAAAATCAGAAAAGATAACCATAAGAGAGAGAAAAAATTAAATGGGAGAGAGAATTAACAATTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>554</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="673" PGL_stop="1847"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="673" e_stop="1847"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="673" e_stop="1847" e_length="1175"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="673" stop="1439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="674" stop="1304"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296447" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1206" stop="1833"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1246" stop="1847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1246" stop="1794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351049" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCATTCCTCCTCAAAAAGCTGTGTCTGCGAAGATCAACTAATATGAGGTGGTCCAATGGCACACTGCAATACAATTTGTTGAGCTACTGTGTTGAGTTCAAGCCCCCACGGTGCTACTGGTTCCAAAAACTCTTCCGAATCAATGAGCTCTTGGAAAAACACAAGTACAAGAAGGATGAACTAGTCACCCCAGGGTTAAAAAAGCTGATCTTTGACCATTTCAAAAAGTTTGCCGGAGAAAGTAATAACAAGCATGATCATCCAGTCTTATGCACAAGTAGAGGCACTGAAGCACTTAAAGGAAATGGCTGTTCTTCCCTAGTTTGGTCGACCGAGTTAGAATTTGATCAAAGTTTCCTTATTTGGCACATTGCTACTGATCTATGCTATTACACTGACGATAGTAGTGGTACTCGTTCCATCGAATCCAAACAAAGCAAGCAGTTATCAGATTATATGTTGTATCTTTTAGTAGTGTGTCCCTTTATGCTGCCAATAGGACTTGGGATGATCAGATTTAGAGACACATGTGCTGAAGCCAAAGAGTTTTTTACAGAGAGGAAAGTCGGAAAAGACTTAACTATAGCTAGTCGCAAGTTGCTAACAGTGAATACTGAAGTTGGACCTGCAAAAGTGAAAGGGGATAGGAGCAAGAGCGTGTTGTTTGATGCGTGCATACTTGCCAAATCATTGAAAGCAAAGGGTAATCAGAGAAAATGGGAAATCATCAGTGAAGTATGGGTGGAAATGCTTGCGTATGCTGCTACACATTGCAGAGGGAACCATCACGCTCAACAGCTACGTAAAGGAGGAGAGCTTCTTACTCATGTCTGGCTTCTTATGGCACATCTTGGCATCACAGAGCAATTTCAGATAAACAGAGGTCATGCTAGAGCCAAGCTCATTGTCAAGTAAGAAACTCCGGTTCTTGTGCTGATCAAGACATAGTTAGGTAAATAAATGTGTGTTCTCTCTAATCGTTTAAGCTTTTTAGCATGATATTACAGTAGAGACAGGCTAAGAAAAATCAGTTGAATTTTAGCATGTATCTTTACTACTTGTAATTCACGATGCGTAAGGGTGATCAACTTGAACACTCTACATTGGAAAATCATAACTTTTGATTGTTTCCAGGGAATAACATCCACAACGTAGTGATTGAAGAGTCTTGATC</gDNA_template>
            <first_frame> V  I  P  P  Q  K  A  V  S  A  K  I  N  *  Y  E  V  V  Q  W  H  T  A  I  Q  F  V  E  L  L  C  *  V  Q  A  P  T  V  L  L  V  P  K  T  L  P  N  Q  *  A  L  G  K  T  Q  V  Q  E  G  *  T  S  H  P  R  V  K  K  A  D  L  *  P  F  Q  K  V  C  R  R  K  *  *  Q  A  *  S  S  S  L  M  H  K  *  R  H  *  S  T  *  R  K  W  L  F  F  P  S  L  V  D  R  V  R  I  *  S  K  F  P  Y  L  A  H  C  Y  *  S  M  L  L  H  *  R  *  *  W  Y  S  F  H  R  I  Q  T  K  Q  A  V  I  R  L  Y  V  V  S  F  S  S  V  S  L  Y  A  A  N  R  T  W  D  D  Q  I  *  R  H  M  C  *  S  Q  R  V  F  Y  R  E  E  S  R  K  R  L  N  Y  S  *  S  Q  V  A  N  S  E  Y  *  S  W  T  C  K  S  E  R  G  *  E  Q  E  R  V  V  *  C  V  H  T  C  Q  I  I  E  S  K  G  *  S  E  K  M  G  N  H  Q  *  S  M  G  G  N  A  C  V  C  C  Y  T  L  Q  R  E  P  S  R  S  T  A  T  *  R  R  R  A  S  Y  S  C  L  A  S  Y  G  T  S  W  H  H  R  A  I  S  D  K  Q  R  S  C  *  S  Q  A  H  C  Q  V  R  N  S  G  S  C  A  D  Q  D  I  V  R  *  I  N  V  C  S  L  *  S  F  K  L  F  S  M  I  L  Q  *  R  Q  A  K  K  N  Q  L  N  F  S  M  Y  L  Y  Y  L  *  F  T  M  R  K  G  D  Q  L  E  H  S  T  L  E  N  H  N  F  *  L  F  P  G  N  N  I  H  N  V  V  I  E  E  S  *   </first_frame>
            <second_frame>  S  F  L  L  K  K  L  C  L  R  R  S  T  N  M  R  W  S  N  G  T  L  Q  Y  N  L  L  S  Y  C  V  E  F  K  P  P  R  C  Y  W  F  Q  K  L  F  R  I  N  E  L  L  E  K  H  K  Y  K  K  D  E  L  V  T  P  G  L  K  K  L  I  F  D  H  F  K  K  F  A  G  E  S  N  N  K  H  D  H  P  V  L  C  T  S  R  G  T  E  A  L  K  G  N  G  C  S  S  L  V  W  S  T  E  L  E  F  D  Q  S  F  L  I  W  H  I  A  T  D  L  C  Y  Y  T  D  D  S  S  G  T  R  S  I  E  S  K  Q  S  K  Q  L  S  D  Y  M  L  Y  L  L  V  V  C  P  F  M  L  P  I  G  L  G  M  I  R  F  R  D  T  C  A  E  A  K  E  F  F  T  E  R  K  V  G  K  D  L  T  I  A  S  R  K  L  L  T  V  N  T  E  V  G  P  A  K  V  K  G  D  R  S  K  S  V  L  F  D  A  C  I  L  A  K  S  L  K  A  K  G  N  Q  R  K  W  E  I  I  S  E  V  W  V  E  M  L  A  Y  A  A  T  H  C  R  G  N  H  H  A  Q  Q  L  R  K  G  G  E  L  L  T  H  V  W  L  L  M  A  H  L  G  I  T  E  Q  F  Q  I  N  R  G  H  A  R  A  K  L  I  V  K  *  E  T  P  V  L  V  L  I  K  T  *  L  G  K  *  M  C  V  L  S  N  R  L  S  F  L  A  *  Y  Y  S  R  D  R  L  R  K  I  S  *  I  L  A  C  I  F  T  T  C  N  S  R  C  V  R  V  I  N  L  N  T  L  H  W  K  I  I  T  F  D  C  F  Q  G  I  T  S  T  T  *  *  L  K  S  L  D  </second_frame>
            <third_frame>   H  S  S  S  K  S  C  V  C  E  D  Q  L  I  *  G  G  P  M  A  H  C  N  T  I  C  *  A  T  V  L  S  S  S  P  H  G  A  T  G  S  K  N  S  S  E  S  M  S  S  W  K  N  T  S  T  R  R  M  N  *  S  P  Q  G  *  K  S  *  S  L  T  I  S  K  S  L  P  E  K  V  I  T  S  M  I  I  Q  S  Y  A  Q  V  E  A  L  K  H  L  K  E  M  A  V  L  P  *  F  G  R  P  S  *  N  L  I  K  V  S  L  F  G  T  L  L  L  I  Y  A  I  T  L  T  I  V  V  V  L  V  P  S  N  P  N  K  A  S  S  Y  Q  I  I  C  C  I  F  *  *  C  V  P  L  C  C  Q  *  D  L  G  *  S  D  L  E  T  H  V  L  K  P  K  S  F  L  Q  R  G  K  S  E  K  T  *  L  *  L  V  A  S  C  *  Q  *  I  L  K  L  D  L  Q  K  *  K  G  I  G  A  R  A  C  C  L  M  R  A  Y  L  P  N  H  *  K  Q  R  V  I  R  E  N  G  K  S  S  V  K  Y  G  W  K  C  L  R  M  L  L  H  I  A  E  G  T  I  T  L  N  S  Y  V  K  E  E  S  F  L  L  M  S  G  F  L  W  H  I  L  A  S  Q  S  N  F  R  *  T  E  V  M  L  E  P  S  S  L  S  S  K  K  L  R  F  L  C  *  S  R  H  S  *  V  N  K  C  V  F  S  L  I  V  *  A  F  *  H  D  I  T  V  E  T  G  *  E  K  S  V  E  F  *  H  V  S  L  L  L  V  I  H  D  A  *  G  *  S  T  *  T  L  Y  I  G  K  S  *  L  L  I  V  S  R  E  *  H  P  Q  R  S  D  *  R  V  L  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0115G22.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="674" stop="1588"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>912</number_coding_nucleotides>
                  <number_encoded_amino_acids>304</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFLLKKLCLRRSTNMRWSNGTLQYNLLSYCVEFKPPRCYWFQKLFRINELLEKHKYKKDELVTPGLKKLIFDHFKKFAGESNNKHDHPVLCTSRGTEALKGNGCSSLVWSTELEFDQSFLIWHIATDLCYYTDDSSGTRSIESKQSKQLSDYMLYLLVVCPFMLPIGLGMIRFRDTCAEAKEFFTERKVGKDLTIASRKLLTVNTEVGPAKVKGDRSKSVLFDACILAKSLKAKGNQRKWEIISEVWVEMLAYAATHCRGNHHAQQLRKGGELLTHVWLLMAHLGITEQFQINRGHARAKLIVK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="1843" PGL_stop="1100"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1843" e_stop="1100"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.987"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="1843" e_stop="1100" e_length="744"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1843" stop="1100"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541098" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGACTCTTCAATCACTACGTTGTGGATGTTATTCCCTGGAAACAATCAAAAGTTATGATTTTCCAATGTAGAGTGTTCAAGTTGATCACCCTTACGCATCGTGAATTACAAGTAGTAAAGATACATGCTAAAATTCAACTGATTTTTCTTAGCCTGTCTCTACTGTAATATCATGCTAAAAAGCTTAAACGATTAGAGAGAACACACATTTATTTACCTAACTATGTCTTGATCAGCACAAGAACCGGAGTTTCTTACTTGACAATGAGCTTGGCTCTAGCATGACCTCTGTTTATCTGAAATTGCTCTGTGATGCCAAGATGTGCCATAAGAAGCCAGACATGAGTAAGAAGCTCTCCTCCTTTACGTAGCTGTTGAGCGTGATGGTTCCCTCTGCAATGTGTAGCAGCATACGCAAGCATTTCCACCCATACTTCACTGATGATTTCCCATTTTCTCTGATTACCCTTTGCTTTCAATGATTTGGCAAGTATGCACGCATCAAACAACACGCTCTTGCTCCTATCCCCTTTCACTTTTGCAGGTCCAACTTCAGTATTCACTGTTAGCAACTTGCGACTAGCTATAGTTAAGTCTTTTCCGACTTTCCTCTCTGTAAAAAACTCTTTGGCTTCAGCACATGTGTCTCTAAATCTGATCATCCCAAGTCCTATTGGCAGCATAAAGGGACACACTACTAAAAGATACAACATATAATCTGATAACTGCTTGCTTTGTTTGGA</gDNA_template>
            <first_frame> K  T  L  Q  S  L  R  C  G  C  Y  S  L  E  T  I  K  S  Y  D  F  P  M  *  S  V  Q  V  D  H  P  Y  A  S  *  I  T  S  S  K  D  T  C  *  N  S  T  D  F  S  *  P  V  S  T  V  I  S  C  *  K  A  *  T  I  R  E  N  T  H  L  F  T  *  L  C  L  D  Q  H  K  N  R  S  F  L  L  D  N  E  L  G  S  S  M  T  S  V  Y  L  K  L  L  C  D  A  K  M  C  H  K  K  P  D  M  S  K  K  L  S  S  F  T  *  L  L  S  V  M  V  P  S  A  M  C  S  S  I  R  K  H  F  H  P  Y  F  T  D  D  F  P  F  S  L  I  T  L  C  F  Q  *  F  G  K  Y  A  R  I  K  Q  H  A  L  A  P  I  P  F  H  F  C  R  S  N  F  S  I  H  C  *  Q  L  A  T  S  Y  S  *  V  F  S  D  F  P  L  C  K  K  L  F  G  F  S  T  C  V  S  K  S  D  H  P  K  S  Y  W  Q  H  K  G  T  H  Y  *  K  I  Q  H  I  I  *  *  L  L  A  L  F  G </first_frame>
            <second_frame>  R  L  F  N  H  Y  V  V  D  V  I  P  W  K  Q  S  K  V  M  I  F  Q  C  R  V  F  K  L  I  T  L  T  H  R  E  L  Q  V  V  K  I  H  A  K  I  Q  L  I  F  L  S  L  S  L  L  *  Y  H  A  K  K  L  K  R  L  E  R  T  H  I  Y  L  P  N  Y  V  L  I  S  T  R  T  G  V  S  Y  L  T  M  S  L  A  L  A  *  P  L  F  I  *  N  C  S  V  M  P  R  C  A  I  R  S  Q  T  *  V  R  S  S  P  P  L  R  S  C  *  A  *  W  F  P  L  Q  C  V  A  A  Y  A  S  I  S  T  H  T  S  L  M  I  S  H  F  L  *  L  P  F  A  F  N  D  L  A  S  M  H  A  S  N  N  T  L  L  L  L  S  P  F  T  F  A  G  P  T  S  V  F  T  V  S  N  L  R  L  A  I  V  K  S  F  P  T  F  L  S  V  K  N  S  L  A  S  A  H  V  S  L  N  L  I  I  P  S  P  I  G  S  I  K  G  H  T  T  K  R  Y  N  I  *  S  D  N  C  L  L  C  L   </second_frame>
            <third_frame>   D  S  S  I  T  T  L  W  M  L  F  P  G  N  N  Q  K  L  *  F  S  N  V  E  C  S  S  *  S  P  L  R  I  V  N  Y  K  *  *  R  Y  M  L  K  F  N  *  F  F  L  A  C  L  Y  C  N  I  M  L  K  S  L  N  D  *  R  E  H  T  F  I  Y  L  T  M  S  *  S  A  Q  E  P  E  F  L  T  *  Q  *  A  W  L  *  H  D  L  C  L  S  E  I  A  L  *  C  Q  D  V  P  *  E  A  R  H  E  *  E  A  L  L  L  Y  V  A  V  E  R  D  G  S  L  C  N  V  *  Q  H  T  Q  A  F  P  P  I  L  H  *  *  F  P  I  F  S  D  Y  P  L  L  S  M  I  W  Q  V  C  T  H  Q  T  T  R  S  C  S  Y  P  L  S  L  L  Q  V  Q  L  Q  Y  S  L  L  A  T  C  D  *  L  *  L  S  L  F  R  L  S  S  L  *  K  T  L  W  L  Q  H  M  C  L  *  I  *  S  S  Q  V  L  L  A  A  *  R  D  T  L  L  K  D  T  T  Y  N  L  I  T  A  C  F  V  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0115G22.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1380" stop="1126"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPFAFNDLASMHASNNTLLLLSPFTFAGPTSVFTVSNLRLAIVKSFPTFLSVKNSLASAHVSLNLIIPSPIGSIKGHTTKRYNI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="5409" PGL_stop="2110"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="5409" e_stop="5278"/>
            <exon e_start="5175" e_stop="5068"/>
            <exon e_start="4548" e_stop="4384"/>
            <exon e_start="4273" e_stop="4106"/>
            <exon e_start="3718" e_stop="3558"/>
            <exon e_start="3366" e_stop="3305"/>
            <exon e_start="3121" e_stop="3072"/>
            <exon e_start="2983" e_stop="2577"/>
            <exon e_start="2446" e_stop="2110"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.626" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.534" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.877" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5409" e_stop="5278" e_length="132"/>
          </exon>
          <intron i_serial="1" don_prob="0.626" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5175" e_stop="5068" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4548" e_stop="4384" e_length="165"/>
          </exon>
          <intron i_serial="3" don_prob="0.534" acc_prob="0.989">
            <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4273" e_stop="4106" e_length="168"/>
          </exon>
          <intron i_serial="4" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4105" i_stop="3719" i_length="387"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="3718" e_stop="3558" e_length="161"/>
          </exon>
          <intron i_serial="5" don_prob="0.981" acc_prob="0.988">
            <gDNA_intron_boundary i_start="3557" i_stop="3367" i_length="191"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="3366" e_stop="3305" e_length="62"/>
          </exon>
          <intron i_serial="6" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="3304" i_stop="3122" i_length="183"/>
          </intron>
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              <exon start="3121" stop="3072"/>
              <exon start="2983" stop="2918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5344" stop="5278"/>
              <exon start="5175" stop="5068"/>
              <exon start="4548" stop="4384"/>
              <exon start="4273" stop="4106"/>
              <exon start="3718" stop="3676"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279460" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5333" stop="5278"/>
              <exon start="5175" stop="5068"/>
              <exon start="4548" stop="4384"/>
              <exon start="4273" stop="4106"/>
              <exon start="3718" stop="3558"/>
              <exon start="3366" stop="3346"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E730364" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5303" stop="5278"/>
              <exon start="5175" stop="5068"/>
              <exon start="4548" stop="4384"/>
              <exon start="4273" stop="4250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5291" stop="5278"/>
              <exon start="5175" stop="5068"/>
              <exon start="4548" stop="4384"/>
              <exon start="4273" stop="4121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5097" stop="5068"/>
              <exon start="4548" stop="4384"/>
              <exon start="4273" stop="4196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4531" stop="4384"/>
              <exon start="4273" stop="4187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4390" stop="4384"/>
              <exon start="4273" stop="4106"/>
              <exon start="3718" stop="3558"/>
              <exon start="3366" stop="3305"/>
              <exon start="3121" stop="3072"/>
              <exon start="2983" stop="2646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4239" stop="4106"/>
              <exon start="3718" stop="3558"/>
              <exon start="3366" stop="3305"/>
              <exon start="3121" stop="3072"/>
              <exon start="2983" stop="2902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4213" stop="4106"/>
              <exon start="3718" stop="3558"/>
              <exon start="3366" stop="3305"/>
              <exon start="3121" stop="3076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4205" stop="4106"/>
              <exon start="3718" stop="3558"/>
              <exon start="3366" stop="3305"/>
              <exon start="3121" stop="3072"/>
              <exon start="2983" stop="2909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3718" stop="3558"/>
              <exon start="3366" stop="3305"/>
              <exon start="3121" stop="3072"/>
              <exon start="2983" stop="2852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3700" stop="3558"/>
              <exon start="3366" stop="3305"/>
              <exon start="3121" stop="3072"/>
              <exon start="2983" stop="2821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3596" stop="3558"/>
              <exon start="3366" stop="3305"/>
              <exon start="3121" stop="3072"/>
              <exon start="2983" stop="2642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3311" stop="3305"/>
              <exon start="3121" stop="3072"/>
              <exon start="2983" stop="2577"/>
              <exon start="2446" stop="2264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2972" stop="2577"/>
              <exon start="2446" stop="2110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373407" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2938" stop="2577"/>
              <exon start="2446" stop="2134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397008" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2919" stop="2577"/>
              <exon start="2446" stop="2134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395323" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2909" stop="2577"/>
              <exon start="2446" stop="2388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2903" stop="2577"/>
              <exon start="2446" stop="2134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397203" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2894" stop="2577"/>
              <exon start="2446" stop="2210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285373" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2832" stop="2577"/>
              <exon start="2446" stop="2122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2828" stop="2577"/>
              <exon start="2446" stop="2202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224686" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2781" stop="2577"/>
              <exon start="2446" stop="2229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224826" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2743" stop="2577"/>
              <exon start="2446" stop="2110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290435" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2712" stop="2577"/>
              <exon start="2446" stop="2202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224610" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2712" stop="2577"/>
              <exon start="2446" stop="2207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228709" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2688" stop="2577"/>
              <exon start="2446" stop="2202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217411" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2674" stop="2577"/>
              <exon start="2446" stop="2122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227504" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2674" stop="2577"/>
              <exon start="2446" stop="2202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229189" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2669" stop="2577"/>
              <exon start="2446" stop="2149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229205" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2651" stop="2577"/>
              <exon start="2446" stop="2134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396583" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2642" stop="2577"/>
              <exon start="2446" stop="2138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228725" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2637" stop="2577"/>
              <exon start="2446" stop="2114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215736" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2627" stop="2577"/>
              <exon start="2446" stop="2149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2624" stop="2577"/>
              <exon start="2446" stop="2114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223864" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2436" stop="2114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223763" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2340" stop="2114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215921" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTAAGTAGTTTTTGTCAAATATACAAAAACCATGGCTTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG : AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG : ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT : GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAG : GGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAG : CAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTG : GTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAG : AGGCTTCTGGATGCATCACACCGTGACTTGAGGAGAGCGAGAGCTGCAGCATTGAACATTGTCCCGACCAGCACTGGTGCAGCAAAGGCTGTGTCTCTAGTGCTACCTCAGCTCAAGGGAAAGCTTAATGGAATTGCTCTCCGAGTGCCAACACCTAATGTTTCGGTTGTTGACCTTGTTATAAATGTTGAAAAGAAAGGAATTTCAGCTGAAGATGTCAATGCAGCTTTCAGAAAGGCAGCTGACGGTCCGTTGAATGGCATATTGGCTGTTTGTGATGAGCCTCTTGTGTCAGTTGACTTCCGATGCAGTGATGTTTCCACCACCATCGACTCCTCTTTAACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAG : CCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACAGTTTGGATATCATGTGTACAGTCATATAGACTGGTTTCACCATTAACCAGGATGCATTTCAACAATGAATTCTGTTTTACATTTCAAGATCT</gDNA_template>
            <first_frame> I  *  V  V  F  V  K  Y  T  K  T  M  A  S  H  A  A  L  A  P  S  R  I  P  T  S  T  R  L  L  S  K  N  S  Y  S  F  P  T  Q  C  F  S  K  :  K  F  E  V  A  E  F  S  G  L  R  S  S  G  C  V  T  F  C  N  K  E  S  S  F  F  D  V  V  S  A  Q  L  T  P  K  :  T  T  G  S  A  G  P  V  K  G  E  T  V  A  K  L  K  V  A  I  N  G  F  G  R  I  G  R  N  F  L  R  C  W  H  G  R  K  D  S  P  L  D  V  V  V  V  N  D  S  G  G  V  K  N  :  A  S  H  L  L  K  Y  D  S  M  L  G  T  F  K  A  D  V  K  I  V  D  N  E  T  I  S  V  D  G  K  N  I  K  V  V  S  S  R  D  P  L  K  L  P  W  A  E  L  G  I  D  I  V  I  E  :  G  T  G  V  F  V  D  G  P  G  A  G  K  H  I  Q  A  G  A  K  K  V  I  I  T  A  P  A  K  G  A  D  I  P  T  Y  V  V  G  V  N  E  Q  D  Y  S  H  E  V  A  N  I  V  S :   N  A  S  C  T  T  N  C  L  A  P  F  A  K  I  L  D  E  E  F   : G  I  V  K  G  T  M  T  T  T  H  S  Y  T  G  D  Q  :  R  L  L  D  A  S  H  R  D  L  R  R  A  R  A  A  A  L  N  I  V  P  T  S  T  G  A  A  K  A  V  S  L  V  L  P  Q  L  K  G  K  L  N  G  I  A  L  R  V  P  T  P  N  V  S  V  V  D  L  V  I  N  V  E  K  K  G  I  S  A  E  D  V  N  A  A  F  R  K  A  A  D  G  P  L  N  G  I  L  A  V  C  D  E  P  L  V  S  V  D  F  R  C  S  D  V  S  T  T  I  D  S  S  L  T  M  V  M  G  D  D  M  V  K  I  V  A  W  Y  D  N  E  W  G  Y  S :   Q  R  V  V  D  L  A  H  L  V  A  D  K  W  P  G  S  A  A  E  G  S  G  D  A  L  E  D  Y  C  K  T  N  P  A  D  K  E  C  K  V  Y  E  *  S  L  C  F  L  F  L  F  L  K  F  R  M  D  D  F  *  S  *  I  V  S  L  V  Q  K  F  I  N  E  R  T  T  V  K  S  H  S  L  D  I  M  C  T  V  I  *  T  G  F  T  I  N  Q  D  A  F  Q  Q  *  I  L  F  Y  I  S  R  S </first_frame>
            <second_frame>  F  K  *  F  L  S  N  I  Q  K  P  W  L  L  M  Q  L  W  L  L  Q  E  S  L  Q  A  Q  G  F  Y  Q  R  T  L  T  L  S  L  L  N  A  S  L  R :   N  L  K  *  Q  S  S  L  V  F  D  R  V  D  V  *  H  F  V  T  K  S  L  P  F  L  M  L  C  L  L  N  S  L  P  R :   P  Q  D  Q  Q  D  Q  *  K  E  K  Q  L  P  N  *  R  L  P  S  M  V  S  E  E  L  A  G  T  S  F  V  V  G  M  D  A  R  T  H  H  W  M  S  L  L  S  M  T  V  V  V  S  R  M :   H  L  T  C  L  S  M  I  P  C  W  E  H  S  R  L  M  *  K  *  W  I  M  K  L  L  V  L  M  E  R  T  L  K  L  S  L  A  G  I  L  L  S  F  H  G  L  N  L  V  L  T  L  L  S  R :   E  P  V  C  S  L  M  V  R  V  L  G  S  T  S  K  L  V  P  R  K  L  S  S  L  H  Q  Q  K  V  L  I  F  L  H  M  L  L  E  *  M  N  K  T  T  L  T  R  L  P  I  S  *   : A  M  P  L  A  P  P  T  A  W  P  L  L  Q  K  S  W  M  K  N  L  :  V  L  L  R  E  L  *  Q  Q  L  T  L  T  P  E  I  R :   G  F  W  M  H  H  T  V  T  *  G  E  R  E  L  Q  H  *  T  L  S  R  P  A  L  V  Q  Q  R  L  C  L  *  C  Y  L  S  S  R  E  S  L  M  E  L  L  S  E  C  Q  H  L  M  F  R  L  L  T  L  L  *  M  L  K  R  K  E  F  Q  L  K  M  S  M  Q  L  S  E  R  Q  L  T  V  R  *  M  A  Y  W  L  F  V  M  S  L  L  C  Q  L  T  S  D  A  V  M  F  P  P  P  S  T  P  L  *  P  W  L  W  E  T  T  W  S  R  L  S  L  G  M  T  T  S  G  D  T   : A  N  V  W  S  T  *  L  I  W  *  Q  T  N  G  P  V  Q  L  Q  K  G  A  E  T  P  *  R  T  T  A  R  Q  T  L  Q  T  R  N  A  K  S  T  N  N  L  S  A  F  F  S  F  F  *  N  S  A  W  M  I  F  E  A  K  L  F  P  L  F  K  N  L  *  M  N  E  R  Q  *  N  H  T  V  W  I  S  C  V  Q  S  Y  R  L  V  S  P  L  T  R  M  H  F  N  N  E  F  C  F  T  F  Q  D   </second_frame>
            <third_frame>   L  S  S  F  C  Q  I  Y  K  N  H  G  F  S  C  S  F  G  S  F  K  N  P  Y  K  H  K  A  S  I  K  E  L  L  L  F  P  Y  S  M  L  L  *   : E  I  *  S  S  R  V  L  W  S  S  I  E  W  M  C  D  I  L  *  Q  R  V  F  L  F  *  C  C  V  C  S  T  H  S  Q   : D  H  R  I  S  R  T  S  E  R  R  N  S  C  Q  I  E  G  C  H  Q  W  F  R  K  N  W  Q  E  L  P  S  L  L  A  W  T  Q  G  L  T  T  G  C  R  C  C  Q  *  Q  W  W  C  Q  E   : C  I  S  L  A  *  V  *  F  H  V  G  N  I  Q  G  *  C  E  N  S  G  *  *  N  Y  *  C  *  W  K  E  H  *  S  C  L  *  Q  G  S  S  *  A  S  M  G  *  T  W  Y  *  H  C  Y  R   : G  N  R  C  V  R  *  W  S  G  C  W  E  A  H  P  S  W  C  Q  E  S  Y  H  H  C  T  S  K  R  C  *  Y  S  Y  I  C  C  W  S  E  *  T  R  L  L  S  R  G  C  Q  Y  R  K  :  Q  C  L  L  H  H  Q  L  L  G  P  F  C  K  N  P  G  *  R  I  W :   Y  C  *  G  N  Y  D  N  N  S  L  L  H  R  R  S   : E  A  S  G  C  I  T  P  *  L  E  E  S  E  S  C  S  I  E  H  C  P  D  Q  H  W  C  S  K  G  C  V  S  S  A  T  S  A  Q  G  K  A  *  W  N  C  S  P  S  A  N  T  *  C  F  G  C  *  P  C  Y  K  C  *  K  E  R  N  F  S  *  R  C  Q  C  S  F  Q  K  G  S  *  R  S  V  E  W  H  I  G  C  L  *  *  A  S  C  V  S  *  L  P  M  Q  *  C  F  H  H  H  R  L  L  F  N  H  G  Y  G  R  R  H  G  Q  D  C  R  L  V  *  Q  R  V  G  I  Q  :  P  T  C  G  R  L  S  S  S  G  S  R  Q  M  A  R  F  S  C  R  R  E  R  R  R  L  R  G  L  L  Q  D  K  P  C  R  Q  G  M  Q  S  L  R  I  I  S  L  L  S  F  P  F  F  E  I  P  H  G  *  F  L  K  L  N  C  F  P  C  S  K  I  Y  K  *  T  N  D  S  K  I  T  Q  F  G  Y  H  V  Y  S  H  I  D  W  F  H  H  *  P  G  C  I  S  T  M  N  S  V  L  H  F  K  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0115G22.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5403" stop="5278"/>
                    <exon start="5175" stop="5068"/>
                    <exon start="4548" stop="4384"/>
                    <exon start="4273" stop="4106"/>
                    <exon start="3718" stop="3558"/>
                    <exon start="3366" stop="3305"/>
                    <exon start="3121" stop="3072"/>
                    <exon start="2983" stop="2577"/>
                    <exon start="2446" stop="2314"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1377</number_coding_nucleotides>
                  <number_encoded_amino_acids>459</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVFVKYTKTMASHAALAPSRIPTSTRLLSKNSYSFPTQCFSKKFEVAEFSGLRSSGCVTFCNKESSFFDVVSAQLTPKTTGSAGPVKGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDNETISVDGKNIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEQDYSHEVANIVSNASCTTNCLAPFAKILDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVINVEKKGISAEDVNAAFRKAADGPLNGILAVCDEPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKIVAWYDNEWGYSQRVVDLAHLVADKWPGSAAEGSGDALEDYCKTNPADKECKVYE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="5409" e_stop="5278"/>
            <exon e_start="5175" e_stop="5068"/>
            <exon e_start="4548" e_stop="4384"/>
            <exon e_start="4273" e_stop="4126"/>
            <exon e_start="3121" e_stop="3072"/>
            <exon e_start="2983" e_stop="2577"/>
            <exon e_start="2446" e_stop="2110"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.626" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.534" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.877" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="5409" e_stop="5278" e_length="132"/>
          </exon>
          <intron i_serial="1" don_prob="0.626" acc_prob="1.000">
            <gDNA_intron_boundary i_start="5277" i_stop="5176" i_length="102"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="5175" e_stop="5068" e_length="108"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="5067" i_stop="4549" i_length="519"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="4548" e_stop="4384" e_length="165"/>
          </exon>
          <intron i_serial="3" don_prob="0.534" acc_prob="0.989">
            <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="4273" e_stop="4126" e_length="148"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="4125" i_stop="3122" i_length="1004"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="3121" e_stop="3072" e_length="50"/>
          </exon>
          <intron i_serial="5" don_prob="0.924" acc_prob="0.995">
            <gDNA_intron_boundary i_start="3071" i_stop="2984" i_length="88"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="2983" e_stop="2577" e_length="407"/>
          </exon>
          <intron i_serial="6" don_prob="0.877" acc_prob="0.987">
            <gDNA_intron_boundary i_start="2576" i_stop="2447" i_length="130"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="2446" e_stop="2110" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5409" stop="5278"/>
              <exon start="5175" stop="5068"/>
              <exon start="4548" stop="4384"/>
              <exon start="4273" stop="4235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E312942" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5383" stop="5278"/>
              <exon start="5175" stop="5068"/>
              <exon start="4548" stop="4422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5380" stop="5278"/>
              <exon start="5175" stop="5075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5379" stop="5278"/>
              <exon start="5175" stop="5068"/>
              <exon start="4548" stop="4384"/>
              <exon start="4273" stop="4129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5379" stop="5278"/>
              <exon start="5175" stop="5068"/>
              <exon start="4548" stop="4522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295373" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5374" stop="5278"/>
              <exon start="5175" stop="5068"/>
              <exon start="4548" stop="4384"/>
              <exon start="4273" stop="4133"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5372" stop="5278"/>
              <exon start="5175" stop="5068"/>
              <exon start="4548" stop="4442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5371" stop="5278"/>
              <exon start="5175" stop="5068"/>
              <exon start="4548" stop="4384"/>
              <exon start="4273" stop="4186"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5370" stop="5278"/>
              <exon start="5175" stop="5068"/>
              <exon start="4548" stop="4384"/>
              <exon start="4273" stop="4194"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5369" stop="5278"/>
              <exon start="5175" stop="5068"/>
              <exon start="4548" stop="4384"/>
              <exon start="4273" stop="4173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300454" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5368" stop="5278"/>
              <exon start="5175" stop="5068"/>
              <exon start="4548" stop="4384"/>
              <exon start="4273" stop="4132"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5364" stop="5278"/>
              <exon start="5175" stop="5068"/>
              <exon start="4548" stop="4384"/>
              <exon start="4273" stop="4126"/>
              <exon start="3121" stop="3072"/>
              <exon start="2983" stop="2641"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E739717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5364" stop="5278"/>
              <exon start="5175" stop="5068"/>
              <exon start="4548" stop="4384"/>
              <exon start="4273" stop="4223"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5364" stop="5278"/>
              <exon start="5175" stop="5068"/>
              <exon start="4548" stop="4384"/>
              <exon start="4273" stop="4259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396749" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5364" stop="5278"/>
              <exon start="5175" stop="5068"/>
              <exon start="4548" stop="4397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5360" stop="5278"/>
              <exon start="5175" stop="5068"/>
              <exon start="4548" stop="4384"/>
              <exon start="4273" stop="4126"/>
              <exon start="3121" stop="3072"/>
              <exon start="2983" stop="2780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735349" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5360" stop="5278"/>
              <exon start="5175" stop="5068"/>
              <exon start="4548" stop="4396"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277247" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5360" stop="5278"/>
              <exon start="5175" stop="5068"/>
              <exon start="4548" stop="4399"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5360" stop="5278"/>
              <exon start="5175" stop="5068"/>
              <exon start="4548" stop="4424"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279203" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5360" stop="5278"/>
              <exon start="5175" stop="5111"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202808" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5359" stop="5278"/>
              <exon start="5175" stop="5068"/>
              <exon start="4548" stop="4384"/>
              <exon start="4273" stop="4188"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5359" stop="5278"/>
              <exon start="5175" stop="5068"/>
              <exon start="4548" stop="4514"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5358" stop="5278"/>
              <exon start="5175" stop="5068"/>
              <exon start="4548" stop="4384"/>
              <exon start="4273" stop="4159"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282398" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5353" stop="5278"/>
              <exon start="5175" stop="5068"/>
              <exon start="4548" stop="4384"/>
              <exon start="4273" stop="4169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288009" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5303" stop="5278"/>
              <exon start="5175" stop="5068"/>
              <exon start="4548" stop="4384"/>
              <exon start="4273" stop="4250"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291679" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="5097" stop="5068"/>
              <exon start="4548" stop="4384"/>
              <exon start="4273" stop="4196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286610" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4531" stop="4384"/>
              <exon start="4273" stop="4187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2972" stop="2577"/>
              <exon start="2446" stop="2110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373407" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2938" stop="2577"/>
              <exon start="2446" stop="2134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397008" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2919" stop="2577"/>
              <exon start="2446" stop="2134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395323" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2909" stop="2577"/>
              <exon start="2446" stop="2388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2903" stop="2577"/>
              <exon start="2446" stop="2134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397203" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2894" stop="2577"/>
              <exon start="2446" stop="2210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285373" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2832" stop="2577"/>
              <exon start="2446" stop="2122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2828" stop="2577"/>
              <exon start="2446" stop="2202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224686" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2781" stop="2577"/>
              <exon start="2446" stop="2229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224826" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2743" stop="2577"/>
              <exon start="2446" stop="2110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290435" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2712" stop="2577"/>
              <exon start="2446" stop="2202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224610" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2712" stop="2577"/>
              <exon start="2446" stop="2207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228709" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2688" stop="2577"/>
              <exon start="2446" stop="2202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217411" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2674" stop="2577"/>
              <exon start="2446" stop="2122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227504" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2674" stop="2577"/>
              <exon start="2446" stop="2202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229189" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2669" stop="2577"/>
              <exon start="2446" stop="2149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229205" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2651" stop="2577"/>
              <exon start="2446" stop="2134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396583" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2642" stop="2577"/>
              <exon start="2446" stop="2138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228725" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2637" stop="2577"/>
              <exon start="2446" stop="2114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215736" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2627" stop="2577"/>
              <exon start="2446" stop="2149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2624" stop="2577"/>
              <exon start="2446" stop="2114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223864" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2436" stop="2114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223763" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2340" stop="2114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215921" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTAAGTAGTTTTTGTCAAATATACAAAAACCATGGCTTCTCATGCAGCTTTGGCTCCTTCAAGAATCCCTACAAGCACAAGGCTTCTATCAAAGAACTCTTACTCTTTCCCTACTCAATGCTTCTCTAAG : AAATTTGAAGTAGCAGAGTTCTCTGGTCTTCGATCGAGTGGATGTGTGACATTTTGTAACAAAGAGTCTTCCTTTTTTGATGTTGTGTCTGCTCAACTCACTCCCAAG : ACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT : GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTG : GTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAG : AGGCTTCTGGATGCATCACACCGTGACTTGAGGAGAGCGAGAGCTGCAGCATTGAACATTGTCCCGACCAGCACTGGTGCAGCAAAGGCTGTGTCTCTAGTGCTACCTCAGCTCAAGGGAAAGCTTAATGGAATTGCTCTCCGAGTGCCAACACCTAATGTTTCGGTTGTTGACCTTGTTATAAATGTTGAAAAGAAAGGAATTTCAGCTGAAGATGTCAATGCAGCTTTCAGAAAGGCAGCTGACGGTCCGTTGAATGGCATATTGGCTGTTTGTGATGAGCCTCTTGTGTCAGTTGACTTCCGATGCAGTGATGTTTCCACCACCATCGACTCCTCTTTAACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAG : CCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACAGTTTGGATATCATGTGTACAGTCATATAGACTGGTTTCACCATTAACCAGGATGCATTTCAACAATGAATTCTGTTTTACATTTCAAGATCT</gDNA_template>
            <first_frame> I  *  V  V  F  V  K  Y  T  K  T  M  A  S  H  A  A  L  A  P  S  R  I  P  T  S  T  R  L  L  S  K  N  S  Y  S  F  P  T  Q  C  F  S  K  :  K  F  E  V  A  E  F  S  G  L  R  S  S  G  C  V  T  F  C  N  K  E  S  S  F  F  D  V  V  S  A  Q  L  T  P  K  :  T  T  G  S  A  G  P  V  K  G  E  T  V  A  K  L  K  V  A  I  N  G  F  G  R  I  G  R  N  F  L  R  C  W  H  G  R  K  D  S  P  L  D  V  V  V  V  N  D  S  G  G  V  K  N  :  A  S  H  L  L  K  Y  D  S  M  L  G  T  F  K  A  D  V  K  I  V  D  N  E  T  I  S  V  D  G  K  N  I  K  V  V  S  S  R  D  P  L  K  L  P  W  A  E  L   : G  I  V  K  G  T  M  T  T  T  H  S  Y  T  G  D  Q  :  R  L  L  D  A  S  H  R  D  L  R  R  A  R  A  A  A  L  N  I  V  P  T  S  T  G  A  A  K  A  V  S  L  V  L  P  Q  L  K  G  K  L  N  G  I  A  L  R  V  P  T  P  N  V  S  V  V  D  L  V  I  N  V  E  K  K  G  I  S  A  E  D  V  N  A  A  F  R  K  A  A  D  G  P  L  N  G  I  L  A  V  C  D  E  P  L  V  S  V  D  F  R  C  S  D  V  S  T  T  I  D  S  S  L  T  M  V  M  G  D  D  M  V  K  I  V  A  W  Y  D  N  E  W  G  Y  S :   Q  R  V  V  D  L  A  H  L  V  A  D  K  W  P  G  S  A  A  E  G  S  G  D  A  L  E  D  Y  C  K  T  N  P  A  D  K  E  C  K  V  Y  E  *  S  L  C  F  L  F  L  F  L  K  F  R  M  D  D  F  *  S  *  I  V  S  L  V  Q  K  F  I  N  E  R  T  T  V  K  S  H  S  L  D  I  M  C  T  V  I  *  T  G  F  T  I  N  Q  D  A  F  Q  Q  *  I  L  F  Y  I  S  R  S </first_frame>
            <second_frame>  F  K  *  F  L  S  N  I  Q  K  P  W  L  L  M  Q  L  W  L  L  Q  E  S  L  Q  A  Q  G  F  Y  Q  R  T  L  T  L  S  L  L  N  A  S  L  R :   N  L  K  *  Q  S  S  L  V  F  D  R  V  D  V  *  H  F  V  T  K  S  L  P  F  L  M  L  C  L  L  N  S  L  P  R :   P  Q  D  Q  Q  D  Q  *  K  E  K  Q  L  P  N  *  R  L  P  S  M  V  S  E  E  L  A  G  T  S  F  V  V  G  M  D  A  R  T  H  H  W  M  S  L  L  S  M  T  V  V  V  S  R  M :   H  L  T  C  L  S  M  I  P  C  W  E  H  S  R  L  M  *  K  *  W  I  M  K  L  L  V  L  M  E  R  T  L  K  L  S  L  A  G  I  L  L  S  F  H  G  L  N  L  :  V  L  L  R  E  L  *  Q  Q  L  T  L  T  P  E  I  R :   G  F  W  M  H  H  T  V  T  *  G  E  R  E  L  Q  H  *  T  L  S  R  P  A  L  V  Q  Q  R  L  C  L  *  C  Y  L  S  S  R  E  S  L  M  E  L  L  S  E  C  Q  H  L  M  F  R  L  L  T  L  L  *  M  L  K  R  K  E  F  Q  L  K  M  S  M  Q  L  S  E  R  Q  L  T  V  R  *  M  A  Y  W  L  F  V  M  S  L  L  C  Q  L  T  S  D  A  V  M  F  P  P  P  S  T  P  L  *  P  W  L  W  E  T  T  W  S  R  L  S  L  G  M  T  T  S  G  D  T   : A  N  V  W  S  T  *  L  I  W  *  Q  T  N  G  P  V  Q  L  Q  K  G  A  E  T  P  *  R  T  T  A  R  Q  T  L  Q  T  R  N  A  K  S  T  N  N  L  S  A  F  F  S  F  F  *  N  S  A  W  M  I  F  E  A  K  L  F  P  L  F  K  N  L  *  M  N  E  R  Q  *  N  H  T  V  W  I  S  C  V  Q  S  Y  R  L  V  S  P  L  T  R  M  H  F  N  N  E  F  C  F  T  F  Q  D   </second_frame>
            <third_frame>   L  S  S  F  C  Q  I  Y  K  N  H  G  F  S  C  S  F  G  S  F  K  N  P  Y  K  H  K  A  S  I  K  E  L  L  L  F  P  Y  S  M  L  L  *   : E  I  *  S  S  R  V  L  W  S  S  I  E  W  M  C  D  I  L  *  Q  R  V  F  L  F  *  C  C  V  C  S  T  H  S  Q   : D  H  R  I  S  R  T  S  E  R  R  N  S  C  Q  I  E  G  C  H  Q  W  F  R  K  N  W  Q  E  L  P  S  L  L  A  W  T  Q  G  L  T  T  G  C  R  C  C  Q  *  Q  W  W  C  Q  E   : C  I  S  L  A  *  V  *  F  H  V  G  N  I  Q  G  *  C  E  N  S  G  *  *  N  Y  *  C  *  W  K  E  H  *  S  C  L  *  Q  G  S  S  *  A  S  M  G  *  T  W :   Y  C  *  G  N  Y  D  N  N  S  L  L  H  R  R  S   : E  A  S  G  C  I  T  P  *  L  E  E  S  E  S  C  S  I  E  H  C  P  D  Q  H  W  C  S  K  G  C  V  S  S  A  T  S  A  Q  G  K  A  *  W  N  C  S  P  S  A  N  T  *  C  F  G  C  *  P  C  Y  K  C  *  K  E  R  N  F  S  *  R  C  Q  C  S  F  Q  K  G  S  *  R  S  V  E  W  H  I  G  C  L  *  *  A  S  C  V  S  *  L  P  M  Q  *  C  F  H  H  H  R  L  L  F  N  H  G  Y  G  R  R  H  G  Q  D  C  R  L  V  *  Q  R  V  G  I  Q  :  P  T  C  G  R  L  S  S  S  G  S  R  Q  M  A  R  F  S  C  R  R  E  R  R  R  L  R  G  L  L  Q  D  K  P  C  R  Q  G  M  Q  S  L  R  I  I  S  L  L  S  F  P  F  F  E  I  P  H  G  *  F  L  K  L  N  C  F  P  C  S  K  I  Y  K  *  T  N  D  S  K  I  T  Q  F  G  Y  H  V  Y  S  H  I  D  W  F  H  H  *  P  G  C  I  S  T  M  N  S  V  L  H  F  K  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0115G22.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="5403" stop="5278"/>
                    <exon start="5175" stop="5068"/>
                    <exon start="4548" stop="4384"/>
                    <exon start="4273" stop="4126"/>
                    <exon start="3121" stop="3072"/>
                    <exon start="2983" stop="2577"/>
                    <exon start="2446" stop="2314"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1134</number_coding_nucleotides>
                  <number_encoded_amino_acids>378</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVFVKYTKTMASHAALAPSRIPTSTRLLSKNSYSFPTQCFSKKFEVAEFSGLRSSGCVTFCNKESSFFDVVSAQLTPKTTGSAGPVKGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDNETISVDGKNIKVVSSRDPLKLPWAELGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVINVEKKGISAEDVNAAFRKAADGPLNGILAVCDEPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKIVAWYDNEWGYSQRVVDLAHLVADKWPGSAAEGSGDALEDYCKTNPADKECKVYE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="4549" e_stop="4384"/>
            <exon e_start="4273" e_stop="4106"/>
            <exon e_start="3718" e_stop="3558"/>
            <exon e_start="3366" e_stop="3305"/>
            <exon e_start="3121" e_stop="3072"/>
            <exon e_start="2983" e_stop="2577"/>
            <exon e_start="2446" e_stop="2110"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.534" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.981" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.924" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.877" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="4549" e_stop="4384" e_length="166"/>
          </exon>
          <intron i_serial="1" don_prob="0.534" acc_prob="0.989">
            <gDNA_intron_boundary i_start="4383" i_stop="4274" i_length="110"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="4273" e_stop="4106" e_length="168"/>
          </exon>
          <intron i_serial="2" don_prob="0.986" acc_prob="0.999">
            <gDNA_intron_boundary i_start="4105" i_stop="3719" i_length="387"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="3718" e_stop="3558" e_length="161"/>
          </exon>
          <intron i_serial="3" don_prob="0.981" acc_prob="0.988">
            <gDNA_intron_boundary i_start="3557" i_stop="3367" i_length="191"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="3366" e_stop="3305" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="3304" i_stop="3122" i_length="183"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="3121" e_stop="3072" e_length="50"/>
          </exon>
          <intron i_serial="5" don_prob="0.924" acc_prob="0.995">
            <gDNA_intron_boundary i_start="3071" i_stop="2984" i_length="88"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="2983" e_stop="2577" e_length="407"/>
          </exon>
          <intron i_serial="6" don_prob="0.877" acc_prob="0.987">
            <gDNA_intron_boundary i_start="2576" i_stop="2447" i_length="130"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="2446" e_stop="2110" e_length="337"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4549" stop="4384"/>
              <exon start="4273" stop="4106"/>
              <exon start="3718" stop="3610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4531" stop="4384"/>
              <exon start="4273" stop="4187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290841" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4390" stop="4384"/>
              <exon start="4273" stop="4106"/>
              <exon start="3718" stop="3558"/>
              <exon start="3366" stop="3305"/>
              <exon start="3121" stop="3072"/>
              <exon start="2983" stop="2646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727730" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4239" stop="4106"/>
              <exon start="3718" stop="3558"/>
              <exon start="3366" stop="3305"/>
              <exon start="3121" stop="3072"/>
              <exon start="2983" stop="2902"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287921" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4213" stop="4106"/>
              <exon start="3718" stop="3558"/>
              <exon start="3366" stop="3305"/>
              <exon start="3121" stop="3076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281051" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="4205" stop="4106"/>
              <exon start="3718" stop="3558"/>
              <exon start="3366" stop="3305"/>
              <exon start="3121" stop="3072"/>
              <exon start="2983" stop="2909"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299436" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3718" stop="3558"/>
              <exon start="3366" stop="3305"/>
              <exon start="3121" stop="3072"/>
              <exon start="2983" stop="2852"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E316411" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3700" stop="3558"/>
              <exon start="3366" stop="3305"/>
              <exon start="3121" stop="3072"/>
              <exon start="2983" stop="2821"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281867" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3596" stop="3558"/>
              <exon start="3366" stop="3305"/>
              <exon start="3121" stop="3072"/>
              <exon start="2983" stop="2642"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281778" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3311" stop="3305"/>
              <exon start="3121" stop="3072"/>
              <exon start="2983" stop="2577"/>
              <exon start="2446" stop="2264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285262" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2972" stop="2577"/>
              <exon start="2446" stop="2110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373407" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2938" stop="2577"/>
              <exon start="2446" stop="2134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397008" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2919" stop="2577"/>
              <exon start="2446" stop="2134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395323" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2909" stop="2577"/>
              <exon start="2446" stop="2388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2903" stop="2577"/>
              <exon start="2446" stop="2134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E397203" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2894" stop="2577"/>
              <exon start="2446" stop="2210"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285373" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2832" stop="2577"/>
              <exon start="2446" stop="2122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732407" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2828" stop="2577"/>
              <exon start="2446" stop="2202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224686" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2781" stop="2577"/>
              <exon start="2446" stop="2229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224826" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2743" stop="2577"/>
              <exon start="2446" stop="2110"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290435" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2712" stop="2577"/>
              <exon start="2446" stop="2202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224610" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2712" stop="2577"/>
              <exon start="2446" stop="2207"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228709" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2688" stop="2577"/>
              <exon start="2446" stop="2202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217411" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2674" stop="2577"/>
              <exon start="2446" stop="2122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227504" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2674" stop="2577"/>
              <exon start="2446" stop="2202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229189" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2669" stop="2577"/>
              <exon start="2446" stop="2149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229205" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2651" stop="2577"/>
              <exon start="2446" stop="2134"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396583" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2642" stop="2577"/>
              <exon start="2446" stop="2138"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228725" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2637" stop="2577"/>
              <exon start="2446" stop="2114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215736" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2627" stop="2577"/>
              <exon start="2446" stop="2149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278483" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2624" stop="2577"/>
              <exon start="2446" stop="2114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223864" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2436" stop="2114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223763" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2340" stop="2114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215921" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GACCACAGGATCAGCAGGACCAGTGAAAGGAGAAACAGTTGCCAAATTGAAGGTTGCCATCAATGGTTTCGGAAGAATTGGCAGGAACTTCCTTCGTTGTTGGCATGGACGCAAGGACTCACCACTGGATGTCGTTGTTGTCAATGACAGTGGTGGTGTCAAGAAT : GCATCTCACTTGCTTAAGTATGATTCCATGTTGGGAACATTCAAGGCTGATGTGAAAATAGTGGATAATGAAACTATTAGTGTTGATGGAAAGAACATTAAAGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCATGGGCTGAACTTGGTATTGACATTGTTATCGAG : GGAACCGGTGTGTTCGTTGATGGTCCGGGTGCTGGGAAGCACATCCAAGCTGGTGCCAAGAAAGTTATCATCACTGCACCAGCAAAAGGTGCTGATATTCCTACATATGTTGTTGGAGTGAATGAACAAGACTACTCTCACGAGGTTGCCAATATCGTAAG : CAATGCCTCTTGCACCACCAACTGCTTGGCCCCTTTTGCAAAAATCCTGGATGAAGAATTTG : GTATTGTTAAGGGAACTATGACAACAACTCACTCTTACACCGGAGATCAG : AGGCTTCTGGATGCATCACACCGTGACTTGAGGAGAGCGAGAGCTGCAGCATTGAACATTGTCCCGACCAGCACTGGTGCAGCAAAGGCTGTGTCTCTAGTGCTACCTCAGCTCAAGGGAAAGCTTAATGGAATTGCTCTCCGAGTGCCAACACCTAATGTTTCGGTTGTTGACCTTGTTATAAATGTTGAAAAGAAAGGAATTTCAGCTGAAGATGTCAATGCAGCTTTCAGAAAGGCAGCTGACGGTCCGTTGAATGGCATATTGGCTGTTTGTGATGAGCCTCTTGTGTCAGTTGACTTCCGATGCAGTGATGTTTCCACCACCATCGACTCCTCTTTAACCATGGTTATGGGAGACGACATGGTCAAGATTGTCGCTTGGTATGACAACGAGTGGGGATACAG : CCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACAGTTTGGATATCATGTGTACAGTCATATAGACTGGTTTCACCATTAACCAGGATGCATTTCAACAATGAATTCTGTTTTACATTTCAAGATCT</gDNA_template>
            <first_frame> D  H  R  I  S  R  T  S  E  R  R  N  S  C  Q  I  E  G  C  H  Q  W  F  R  K  N  W  Q  E  L  P  S  L  L  A  W  T  Q  G  L  T  T  G  C  R  C  C  Q  *  Q  W  W  C  Q  E   : C  I  S  L  A  *  V  *  F  H  V  G  N  I  Q  G  *  C  E  N  S  G  *  *  N  Y  *  C  *  W  K  E  H  *  S  C  L  *  Q  G  S  S  *  A  S  M  G  *  T  W  Y  *  H  C  Y  R   : G  N  R  C  V  R  *  W  S  G  C  W  E  A  H  P  S  W  C  Q  E  S  Y  H  H  C  T  S  K  R  C  *  Y  S  Y  I  C  C  W  S  E  *  T  R  L  L  S  R  G  C  Q  Y  R  K  :  Q  C  L  L  H  H  Q  L  L  G  P  F  C  K  N  P  G  *  R  I  W :   Y  C  *  G  N  Y  D  N  N  S  L  L  H  R  R  S   : E  A  S  G  C  I  T  P  *  L  E  E  S  E  S  C  S  I  E  H  C  P  D  Q  H  W  C  S  K  G  C  V  S  S  A  T  S  A  Q  G  K  A  *  W  N  C  S  P  S  A  N  T  *  C  F  G  C  *  P  C  Y  K  C  *  K  E  R  N  F  S  *  R  C  Q  C  S  F  Q  K  G  S  *  R  S  V  E  W  H  I  G  C  L  *  *  A  S  C  V  S  *  L  P  M  Q  *  C  F  H  H  H  R  L  L  F  N  H  G  Y  G  R  R  H  G  Q  D  C  R  L  V  *  Q  R  V  G  I  Q  :  P  T  C  G  R  L  S  S  S  G  S  R  Q  M  A  R  F  S  C  R  R  E  R  R  R  L  R  G  L  L  Q  D  K  P  C  R  Q  G  M  Q  S  L  R  I  I  S  L  L  S  F  P  F  F  E  I  P  H  G  *  F  L  K  L  N  C  F  P  C  S  K  I  Y  K  *  T  N  D  S  K  I  T  Q  F  G  Y  H  V  Y  S  H  I  D  W  F  H  H  *  P  G  C  I  S  T  M  N  S  V  L  H  F  K  I  </first_frame>
            <second_frame>  T  T  G  S  A  G  P  V  K  G  E  T  V  A  K  L  K  V  A  I  N  G  F  G  R  I  G  R  N  F  L  R  C  W  H  G  R  K  D  S  P  L  D  V  V  V  V  N  D  S  G  G  V  K  N  :  A  S  H  L  L  K  Y  D  S  M  L  G  T  F  K  A  D  V  K  I  V  D  N  E  T  I  S  V  D  G  K  N  I  K  V  V  S  S  R  D  P  L  K  L  P  W  A  E  L  G  I  D  I  V  I  E  :  G  T  G  V  F  V  D  G  P  G  A  G  K  H  I  Q  A  G  A  K  K  V  I  I  T  A  P  A  K  G  A  D  I  P  T  Y  V  V  G  V  N  E  Q  D  Y  S  H  E  V  A  N  I  V  S :   N  A  S  C  T  T  N  C  L  A  P  F  A  K  I  L  D  E  E  F   : G  I  V  K  G  T  M  T  T  T  H  S  Y  T  G  D  Q  :  R  L  L  D  A  S  H  R  D  L  R  R  A  R  A  A  A  L  N  I  V  P  T  S  T  G  A  A  K  A  V  S  L  V  L  P  Q  L  K  G  K  L  N  G  I  A  L  R  V  P  T  P  N  V  S  V  V  D  L  V  I  N  V  E  K  K  G  I  S  A  E  D  V  N  A  A  F  R  K  A  A  D  G  P  L  N  G  I  L  A  V  C  D  E  P  L  V  S  V  D  F  R  C  S  D  V  S  T  T  I  D  S  S  L  T  M  V  M  G  D  D  M  V  K  I  V  A  W  Y  D  N  E  W  G  Y  S :   Q  R  V  V  D  L  A  H  L  V  A  D  K  W  P  G  S  A  A  E  G  S  G  D  A  L  E  D  Y  C  K  T  N  P  A  D  K  E  C  K  V  Y  E  *  S  L  C  F  L  F  L  F  L  K  F  R  M  D  D  F  *  S  *  I  V  S  L  V  Q  K  F  I  N  E  R  T  T  V  K  S  H  S  L  D  I  M  C  T  V  I  *  T  G  F  T  I  N  Q  D  A  F  Q  Q  *  I  L  F  Y  I  S  R  S </second_frame>
            <third_frame>   P  Q  D  Q  Q  D  Q  *  K  E  K  Q  L  P  N  *  R  L  P  S  M  V  S  E  E  L  A  G  T  S  F  V  V  G  M  D  A  R  T  H  H  W  M  S  L  L  S  M  T  V  V  V  S  R  M :   H  L  T  C  L  S  M  I  P  C  W  E  H  S  R  L  M  *  K  *  W  I  M  K  L  L  V  L  M  E  R  T  L  K  L  S  L  A  G  I  L  L  S  F  H  G  L  N  L  V  L  T  L  L  S  R :   E  P  V  C  S  L  M  V  R  V  L  G  S  T  S  K  L  V  P  R  K  L  S  S  L  H  Q  Q  K  V  L  I  F  L  H  M  L  L  E  *  M  N  K  T  T  L  T  R  L  P  I  S  *   : A  M  P  L  A  P  P  T  A  W  P  L  L  Q  K  S  W  M  K  N  L  :  V  L  L  R  E  L  *  Q  Q  L  T  L  T  P  E  I  R :   G  F  W  M  H  H  T  V  T  *  G  E  R  E  L  Q  H  *  T  L  S  R  P  A  L  V  Q  Q  R  L  C  L  *  C  Y  L  S  S  R  E  S  L  M  E  L  L  S  E  C  Q  H  L  M  F  R  L  L  T  L  L  *  M  L  K  R  K  E  F  Q  L  K  M  S  M  Q  L  S  E  R  Q  L  T  V  R  *  M  A  Y  W  L  F  V  M  S  L  L  C  Q  L  T  S  D  A  V  M  F  P  P  P  S  T  P  L  *  P  W  L  W  E  T  T  W  S  R  L  S  L  G  M  T  T  S  G  D  T   : A  N  V  W  S  T  *  L  I  W  *  Q  T  N  G  P  V  Q  L  Q  K  G  A  E  T  P  *  R  T  T  A  R  Q  T  L  Q  T  R  N  A  K  S  T  N  N  L  S  A  F  F  S  F  F  *  N  S  A  W  M  I  F  E  A  K  L  F  P  L  F  K  N  L  *  M  N  E  R  Q  *  N  H  T  V  W  I  S  C  V  Q  S  Y  R  L  V  S  P  L  T  R  M  H  F  N  N  E  F  C  F  T  F  Q  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0115G22.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="4548" stop="4384"/>
                    <exon start="4273" stop="4106"/>
                    <exon start="3718" stop="3558"/>
                    <exon start="3366" stop="3305"/>
                    <exon start="3121" stop="3072"/>
                    <exon start="2983" stop="2577"/>
                    <exon start="2446" stop="2314"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1143</number_coding_nucleotides>
                  <number_encoded_amino_acids>381</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TTGSAGPVKGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDNETISVDGKNIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEQDYSHEVANIVSNASCTTNCLAPFAKILDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVINVEKKGISAEDVNAAFRKAADGPLNGILAVCDEPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKIVAWYDNEWGYSQRVVDLAHLVADKWPGSAAEGSGDALEDYCKTNPADKECKVYE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="2447" e_stop="2114"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="2447" e_stop="2114" e_length="334"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2447" stop="2122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227716" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2436" stop="2114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223763" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2340" stop="2114"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215921" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCAACGTGTGGTCGACTTAGCTCATCTGGTAGCAGACAAATGGCCCGGTTCAGCTGCAGAAGGGAGCGGAGACGCCTTAGAGGACTACTGCAAGACAAACCCTGCAGACAAGGAATGCAAAGTCTACGAATAATCTCTCTGCTTTCTTTTCCTTTTTTTGAAATTCCGCATGGATGATTTTTGAAGCTAAATTGTTTCCCTTGTTCAAAAATTTATAAATGAACGAACGACAGTAAAATCACACAGTTTGGATATCATGTGTACAGTCATATAGACTGGTTTCACCATTAACCAGGATGCATTTCAACAATGAATTCTGTTTTACATTTCAAG</gDNA_template>
            <first_frame> A  N  V  W  S  T  *  L  I  W  *  Q  T  N  G  P  V  Q  L  Q  K  G  A  E  T  P  *  R  T  T  A  R  Q  T  L  Q  T  R  N  A  K  S  T  N  N  L  S  A  F  F  S  F  F  *  N  S  A  W  M  I  F  E  A  K  L  F  P  L  F  K  N  L  *  M  N  E  R  Q  *  N  H  T  V  W  I  S  C  V  Q  S  Y  R  L  V  S  P  L  T  R  M  H  F  N  N  E  F  C  F  T  F  Q  </first_frame>
            <second_frame>  P  T  C  G  R  L  S  S  S  G  S  R  Q  M  A  R  F  S  C  R  R  E  R  R  R  L  R  G  L  L  Q  D  K  P  C  R  Q  G  M  Q  S  L  R  I  I  S  L  L  S  F  P  F  F  E  I  P  H  G  *  F  L  K  L  N  C  F  P  C  S  K  I  Y  K  *  T  N  D  S  K  I  T  Q  F  G  Y  H  V  Y  S  H  I  D  W  F  H  H  *  P  G  C  I  S  T  M  N  S  V  L  H  F  K </second_frame>
            <third_frame>   Q  R  V  V  D  L  A  H  L  V  A  D  K  W  P  G  S  A  A  E  G  S  G  D  A  L  E  D  Y  C  K  T  N  P  A  D  K  E  C  K  V  Y  E  *  S  L  C  F  L  F  L  F  L  K  F  R  M  D  D  F  *  S  *  I  V  S  L  V  Q  K  F  I  N  E  R  T  T  V  K  S  H  S  L  D  I  M  C  T  V  I  *  T  G  F  T  I  N  Q  D  A  F  Q  Q  *  I  L  F  Y  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0115G22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="2133" PGL_stop="2455"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2133" e_stop="2455"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="2133" e_stop="2455" e_length="323"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2133" stop="2455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E398626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2133" stop="2422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E396748" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCATTGTTGAAATGCATCCTGGTTAATGGTGAAACCAGTCTATATGACTGTACACATGATATCCAAACTGTGTGATTTTACTGTCGTTCGTTCATTTATAAATTTTTGAACAAGGGAAACAATTTAGCTTCAAAAATCATCCATGCGGAATTTCAAAAAAAGGAAAAGAAAGCAGAGAGATTATTCGTAGACTTTGCATTCCTTGTCTGCAGGGTTTGTCTTGCAGTAGTCCTCTAAGGCGTCTCCGCTCCCTTCTGCAGCTGAACCGGGCCATTTGTCTGCTACCAGATGAGCTAAGTCGACCACACGTTGGCTGCAATTT</gDNA_template>
            <first_frame> F  I  V  E  M  H  P  G  *  W  *  N  Q  S  I  *  L  Y  T  *  Y  P  N  C  V  I  L  L  S  F  V  H  L  *  I  F  E  Q  G  K  Q  F  S  F  K  N  H  P  C  G  I  S  K  K  G  K  E  S  R  E  I  I  R  R  L  C  I  P  C  L  Q  G  L  S  C  S  S  P  L  R  R  L  R  S  L  L  Q  L  N  R  A  I  C  L  L  P  D  E  L  S  R  P  H  V  G  C  N   </first_frame>
            <second_frame>  S  L  L  K  C  I  L  V  N  G  E  T  S  L  Y  D  C  T  H  D  I  Q  T  V  *  F  Y  C  R  S  F  I  Y  K  F  L  N  K  G  N  N  L  A  S  K  I  I  H  A  E  F  Q  K  K  E  K  K  A  E  R  L  F  V  D  F  A  F  L  V  C  R  V  C  L  A  V  V  L  *  G  V  S  A  P  F  C  S  *  T  G  P  F  V  C  Y  Q  M  S  *  V  D  H  T  L  A  A  I  </second_frame>
            <third_frame>   H  C  *  N  A  S  W  L  M  V  K  P  V  Y  M  T  V  H  M  I  S  K  L  C  D  F  T  V  V  R  S  F  I  N  F  *  T  R  E  T  I  *  L  Q  K  S  S  M  R  N  F  K  K  R  K  R  K  Q  R  D  Y  S  *  T  L  H  S  L  S  A  G  F  V  L  Q  *  S  S  K  A  S  P  L  P  S  A  A  E  P  G  H  L  S  A  T  R  *  A  K  S  T  T  R  W  L  Q  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0115G22.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="2235" stop="2453"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IFEQGKQFSFKNHPCGISKKGKESREIIRRLCIPCLQGLSCSSPLRRLRSLLQLNRAICLLPDELSRPHVGCN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="10857" PGL_stop="6724"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="10857" e_stop="10659"/>
            <exon e_start="8910" e_stop="8790"/>
            <exon e_start="8440" e_stop="8344"/>
            <exon e_start="8142" e_stop="8056"/>
            <exon e_start="6918" e_stop="6724"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.793" e_score="0.995"/>
          <exon-intron don_prob="0.863" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.858" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.983" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="10857" e_stop="10659" e_length="199"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.793">
            <gDNA_intron_boundary i_start="10658" i_stop="8911" i_length="1748"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="8910" e_stop="8790" e_length="121"/>
          </exon>
          <intron i_serial="2" don_prob="0.863" acc_prob="0.971">
            <gDNA_intron_boundary i_start="8789" i_stop="8441" i_length="349"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="8440" e_stop="8344" e_length="97"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.858">
            <gDNA_intron_boundary i_start="8343" i_stop="8143" i_length="201"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="8142" e_stop="8056" e_length="87"/>
          </exon>
          <intron i_serial="4" don_prob="0.996" acc_prob="0.983">
            <gDNA_intron_boundary i_start="8055" i_stop="6919" i_length="1137"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="6918" e_stop="6724" e_length="195"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10857" stop="10659"/>
              <exon start="8910" stop="8790"/>
              <exon start="8440" stop="8344"/>
              <exon start="8142" stop="8056"/>
              <exon start="6918" stop="6864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10821" stop="10659"/>
              <exon start="8910" stop="8790"/>
              <exon start="8440" stop="8344"/>
              <exon start="8142" stop="8056"/>
              <exon start="6918" stop="6724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10808" stop="10659"/>
              <exon start="8910" stop="8790"/>
              <exon start="8440" stop="8344"/>
              <exon start="8142" stop="8056"/>
              <exon start="6918" stop="6740"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10808" stop="10659"/>
              <exon start="8910" stop="8790"/>
              <exon start="8440" stop="8344"/>
              <exon start="8142" stop="8056"/>
              <exon start="6918" stop="6847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296042" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGATATTTATTATCTCTCTTCTCTGCTCTCCAACTGTCGCTCTTCCTACGCCGGCCGGCCGCCGTCCTCCGCCGTTGATTCATTTTTCCGGTGACTGTCTTCCACCTCACTTTTACCCACTTCCCCTAACCTTACAGGATGATAGCTATTTCGAACTCTTTGCTTTTATCAACAACCCCTTCTCTGCATTTCACTTCAG : GGTCCAGTTTGAAGTCGGCAGATAAAAGTGTCGGTGGCACCACCAAATTGGCCTTCAGTCCAAGGCACGGAGGAAAATCATCCTCATCTAGAAGATCATTAACCGTTCAAGCAGAATATAG : TGATGGGGGGAGGCCAAGCAATTCAAGCATCTTTGTAGGTGGCTTTCTTTTAGGAGGAGTAATCGTTGGTGCACTTGGTTGTATCTTCGCACCAGAG : ATTAGCAAGGCATTAGCCGAAACAGATAGGAAGGACCTCATGAGAAAACTGCCAAAGTTTATATATGATGAAGAAAAAGCATTGGAG : AAGCAACGCAAGATACTAACGGAGAAGATAGTCCAATTGAATGATGCTATTGACGACATCTCCAACCAGTTAAGGTCCGGGGATGCAGAAAATGGAGCTGCAGTGAACCTAGATGAAGTTGAAAGTGTTATATAAACAACACTTACAATTGGTTTTCATGTAAATGAATAAACTTTCTGAACACATTGATCTAAT</gDNA_template>
            <first_frame> *  Y  L  L  S  L  F  S  A  L  Q  L  S  L  F  L  R  R  P  A  A  V  L  R  R  *  F  I  F  P  V  T  V  F  H  L  T  F  T  H  F  P  *  P  Y  R  M  I  A  I  S  N  S  L  L  L  S  T  T  P  S  L  H  F  T  S   : G  S  S  L  K  S  A  D  K  S  V  G  G  T  T  K  L  A  F  S  P  R  H  G  G  K  S  S  S  S  R  R  S  L  T  V  Q  A  E  Y  S :   D  G  G  R  P  S  N  S  S  I  F  V  G  G  F  L  L  G  G  V  I  V  G  A  L  G  C  I  F  A  P  E  :  I  S  K  A  L  A  E  T  D  R  K  D  L  M  R  K  L  P  K  F  I  Y  D  E  E  K  A  L  E  :  K  Q  R  K  I  L  T  E  K  I  V  Q  L  N  D  A  I  D  D  I  S  N  Q  L  R  S  G  D  A  E  N  G  A  A  V  N  L  D  E  V  E  S  V  I  *  T  T  L  T  I  G  F  H  V  N  E  *  T  F  *  T  H  *  S  N </first_frame>
            <second_frame>  D  I  Y  Y  L  S  S  L  L  S  N  C  R  S  S  Y  A  G  R  P  P  S  S  A  V  D  S  F  F  R  *  L  S  S  T  S  L  L  P  T  S  P  N  L  T  G  *  *  L  F  R  T  L  C  F  Y  Q  Q  P  L  L  C  I  S  L  Q  :  G  P  V  *  S  R  Q  I  K  V  S  V  A  P  P  N  W  P  S  V  Q  G  T  E  E  N  H  P  H  L  E  D  H  *  P  F  K  Q  N  I   : V  M  G  G  G  Q  A  I  Q  A  S  L  *  V  A  F  F  *  E  E  *  S  L  V  H  L  V  V  S  S  H  Q  R :   L  A  R  H  *  P  K  Q  I  G  R  T  S  *  E  N  C  Q  S  L  Y  M  M  K  K  K  H  W  R :   S  N  A  R  Y  *  R  R  R  *  S  N  *  M  M  L  L  T  T  S  P  T  S  *  G  P  G  M  Q  K  M  E  L  Q  *  T  *  M  K  L  K  V  L  Y  K  Q  H  L  Q  L  V  F  M  *  M  N  K  L  S  E  H  I  D  L   </second_frame>
            <third_frame>   I  F  I  I  S  L  L  C  S  P  T  V  A  L  P  T  P  A  G  R  R  P  P  P  L  I  H  F  S  G  D  C  L  P  P  H  F  Y  P  L  P  L  T  L  Q  D  D  S  Y  F  E  L  F  A  F  I  N  N  P  F  S  A  F  H  F  R :   V  Q  F  E  V  G  R  *  K  C  R  W  H  H  Q  I  G  L  Q  S  K  A  R  R  K  I  I  L  I  *  K  I  I  N  R  S  S  R  I  *  :  *  W  G  E  A  K  Q  F  K  H  L  C  R  W  L  S  F  R  R  S  N  R  W  C  T  W  L  Y  L  R  T  R   : D  *  Q  G  I  S  R  N  R  *  E  G  P  H  E  K  T  A  K  V  Y  I  *  *  R  K  S  I  G   : E  A  T  Q  D  T  N  G  E  D  S  P  I  E  *  C  Y  *  R  H  L  Q  P  V  K  V  R  G  C  R  K  W  S  C  S  E  P  R  *  S  *  K  C  Y  I  N  N  T  Y  N  W  F  S  C  K  *  I  N  F  L  N  T  L  I  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0115G22.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10728" stop="10659"/>
                    <exon start="8910" stop="8790"/>
                    <exon start="8440" stop="8344"/>
                    <exon start="8142" stop="8056"/>
                    <exon start="6918" stop="6784"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYRMIAISNSLLLSTTPSLHFTSGSSLKSADKSVGGTTKLAFSPRHGGKSSSSRRSLTVQAEYSDGGRPSNSSIFVGGFLLGGVIVGALGCIFAPEISKALAETDRKDLMRKLPKFIYDEEKALEKQRKILTEKIVQLNDAIDDISNQLRSGDAENGAAVNLDEVESVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="16795" PGL_stop="11716"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="16795" e_stop="16713"/>
            <exon e_start="15496" e_stop="15400"/>
            <exon e_start="15289" e_stop="15012"/>
            <exon e_start="14914" e_stop="14138"/>
            <exon e_start="14049" e_stop="13960"/>
            <exon e_start="13872" e_stop="13805"/>
            <exon e_start="13714" e_stop="13621"/>
            <exon e_start="13522" e_stop="13162"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.813" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.441" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.579" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16795" e_stop="16713" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15496" e_stop="15400" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.973">
            <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15289" e_stop="15012" e_length="278"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="14914" e_stop="14138" e_length="777"/>
          </exon>
          <intron i_serial="4" don_prob="0.813" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="14049" e_stop="13960" e_length="90"/>
          </exon>
          <intron i_serial="5" don_prob="0.441" acc_prob="0.998">
            <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="13872" e_stop="13805" e_length="68"/>
          </exon>
          <intron i_serial="6" don_prob="0.916" acc_prob="0.990">
            <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="13714" e_stop="13621" e_length="94"/>
          </exon>
          <intron i_serial="7" don_prob="0.971" acc_prob="0.579">
            <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="13522" e_stop="13162" e_length="361"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16795" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16794" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16794" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16794" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16794" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16793" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16792" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16792" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16792" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16790" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16786" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16782" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16782" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16782" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16782" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16780" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16779" stop="16713"/>
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          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACACCAAACATAAACTGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG : TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG : GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG : GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG : GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT : TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG : GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG : GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGTATCTCAGC</gDNA_template>
            <first_frame> H  T  K  H  K  L  F  I  D  Q  K  A  L  S  S  I  L  L  S  F  P  S  P  W  I  P  L  S :   I  A  H  Q  A  H  T  T  P  L  S  *  Q  Q  M  L  V  V  L  C  T  T  M  F  L  P  *  L  L  D  L  E  :  G  L  F  C  L  R  I  T  I  *  L  R  S  S  R  H  L  I  A  R  R  Y  L  N  V  L  F  M  L  E  V  L  V  L  R  D  S  L  K  L  L  M  T  F  L  I  L  L  V  L  I  F  S  E  L  L  A  L  K  R  L  L  F  V  D  S  L  L  L  S  M  N  V  E  A  P  S  L  S  G  T  F  V  V  L  L  S  S  S  T  P  E  R :   V  T  L  I  L  L  E  T  M  S  P  C  S  L  I  V  M  L  S  R  S  L  T  R  F  V  H  *  N  Q  I  Q  S  H  T  F  R  R  T  G  G  Y  L  I  S  S  R  S  F  L  R  V  C  I  H  S  P  S  S  T  M  M  F  V  S  Q  R  I  T  D  T  W  K  V  L  A  F  T  R  I  N  *  L  T  K  R  G  K  H  I  M  *  S  S  T  G  S  Q  L  V  V  *  N  V  C  L  R  K  K  L  L  E  S  V  V  L  I  I  A  T  R  P  R  I  F  T  I  Q  L  L  L  E  T  I  L  S  G  S  F  L  S  K  Q  W  T  P  R  M  *  T  S  S  I  L  I  L  W  M  *  P  R  H  G  L  R  I  S  C  R  *  S  Q  L  V  D  W  C  *  T  G  T  L  I  T  S  S  Q  R  M  N  N  S  R  L  T  L  D  I  L  S  L  V  F  T  I  P  R  I  S  F  S  R  L  G  Y  S  R  M  L  I  L  R  D  T  V  L  D  Q  T  I  C  S  S  Q  L  M  L  P  S  V  V  I  T  T  I  I  A  M  V  L  *  T  *  H  I  A  M  K  R :   W  I  I  C  P  R  G  L  I  L  V  V  L  L  S  S  T  R  F  L  L  V  S  *  M  E  G  V  Q  I :   V  S  F  R  K  K  T  T  S  N  R  Q  G  R  G  T  D  H  G  N  L  T   : G  K  T  D  T  S  T  N  G  L  S  L  Y  P  I  H  E  S  L  M  R  F  A  A  Y  G  Y  H  T  C  L  R :   L  T  S  P  V  V  R  R  S  L  L  V  S  L  *  S  L  Q  C  E  K  S  M  K  I  V  E  M  V  S  S  C  K  C  *  R  T  N  A  K  K  R  P  R  C  A  I  N  C  T  S  F  S  I  V  M  L  Y  F  V  S  N  F  D  V  L  C  F  Y  Y  N  D  V  G  T  *  I  S  S  Q  L  Y  V  Q  C  F  T  F  *  S  Y  V  I  M  L  S  S  C  S  L  W  C  L  K  N  T  L  S  I  S  I  I  S  L  S  F  Q  Y  L  S </first_frame>
            <second_frame>  T  P  N  I  N  C  L  *  I  K  R  L  S  L  Q  F  F  F  H  F  H  H  H  G  S  L  *   : V  S  P  I  K  R  I  R  H  P  F  L  D  N  K  C  W  W  S  C  V  Q  Q  C  F  F  L  D  C  W  T  *  R :   A  C  S  A  *  G  L  L  S  N  *  E  A  R  D  I  *  S  R  E  D  T  *  T  C  C  S  C  *  R  C  *  C  *  G  I  L  *  S  Y  S  *  H  F  S  S  Y  L  C  *  F  S  P  S  S  W  R  S  N  A  C  Y  L  S  I  L  Y  C  C  P  *  T  W  K  P  R  V  Y  Q  G  H  S  W  F  C  C  Q  V  L  H  Q  R   : G  *  L  *  S  C  W  K  Q  C  P  R  V  L  *  S  *  C  *  V  V  P  *  H  D  S  C  I  E  T  K  S  K  V  T  H  S  G  E  L  E  D  T  *  F  L  L  V  P  S  *  E  F  A  Y  I  R  L  L  L  R  *  C  L  S  P  N  G  L  Q  T  H  G  R  F  W  R  S  R  V  S  I  D  *  Q  R  G  E  S  T  L  C  E  V  P  L  E  A  N  L  W  C  E  M  Y  V  *  G  R  S  Y  *  S  R  W  Y  *  S  *  P  R  D  Q  G  S  L  R  F  N  C  C  W  K  L  S  *  V  E  A  F  Y  P  N  N  G  P  R  G  C  R  Q  V  R  F  *  S  S  G  C  N  Q  D  M  A  *  G  S  L  A  V  D  P  S  W  S  I  G  V  E  Q  E  H  *  *  L  L  R  R  E  *  T  T  R  V  *  P  W  T  Y  C  P  W  Y  L  L  F  R  G  *  A  S  P  D  *  D  I  R  V  C  *  Y  S  E  T  P  Y  W  T  K  L  Y  A  A  P  S  *  C  S  Q  V  W  S  S  Q  Q  S  S  R  W  C  Y  E  H  D  T  S  R  *  R   : G  G  L  F  A  L  E  V  *  S  L  S  S  C  *  A  V  P  D  S  F  L  C  L  E  W  K  A  Y  K   : L  C  H  S  E  R  K  Q  L  Q  T  G  R  G  E  V  Q  I  M  G  T  *  Q  :  A  R  Q  I  H  Q  Q  M  G  *  V  F  I  R  S  T  S  H  S  *  D  S  Q  H  M  D  I  I  L  V  S   : G  *  Q  V  L  W  S  E  G  R  F  S  S  H  C  E  A  Y  N  V  K  N  Q  *  K  *  L  K  W  F  Q  A  A  N  V  E  G  L  M  Q  K  N  V  R  V  V  L  *  T  V  L  L  F  Q  S  *  C  C  I  L  Y  R  I  S  M  S  C  V  F  T  I  M  M  L  E  P  E  *  V  H  S  C  M  F  N  V  S  L  S  K  V  M  *  L  C  *  V  L  V  H  F  G  A  *  R  T  H  S  Q  F  Q  *  Y  H  F  H  F  S  I  S   </second_frame>
            <third_frame>   H  Q  T  *  T  V  Y  R  S  K  G  S  L  F  N  S  S  F  I  S  I  T  M  D  P  S  K  :  Y  R  P  S  S  A  Y  D  T  P  F  L  T  T  N  A  G  G  P  V  Y  N  N  V  S  S  L  T  V  G  P  R   : G  P  V  L  L  E  D  Y  Y  L  I  E  K  L  A  T  F  D  R  E  K  I  P  E  R  V  V  H  A  R  G  A  S  A  K  G  F  F  E  V  T  H  D  I  S  H  L  T  C  A  D  F  L  R  A  P  G  A  Q  T  P  V  I  C  R  F  S  T  V  V  H  E  R  G  S  P  E  S  I  R  D  I  R  G  F  A  V  K  F  Y  T  R  E  :  G  N  F  D  L  V  G  N  N  V  P  V  F  F  N  R  D  A  K  S  F  P  D  T  I  R  A  L  K  P  N  P  K  S  H  I  Q  E  N  W  R  I  L  D  F  F  S  F  L  P  E  S  L  H  T  F  A  F  F  Y  D  D  V  C  L  P  T  D  Y  R  H  M  E  G  F  G  V  H  A  Y  Q  L  I  N  K  E  G  K  A  H  Y  V  K  F  H  W  K  P  T  C  G  V  K  C  M  S  E  E  E  A  I  R  V  G  G  T  N  H  S  H  A  T  K  D  L  Y  D  S  I  A  A  G  N  Y  P  E  W  K  L  F  I  Q  T  M  D  P  E  D  V  D  K  F  D  F  D  P  L  D  V  T  K  T  W  P  E  D  L  L  P  L  I  P  V  G  R  L  V  L  N  R  N  I  D  N  F  F  A  E  N  E  Q  L  A  F  N  P  G  H  I  V  P  G  I  Y  Y  S  E  D  K  L  L  Q  T  R  I  F  A  Y  A  D  T  Q  R  H  R  I  G  P  N  Y  M  Q  L  P  V  N  A  P  K  C  G  H  H  N  N  H  R  D  G  A  M  N  M  T  H  R  D  E  E  :  V  D  Y  L  P  S  R  F  D  P  C  R  P  A  E  Q  Y  P  I  P  S  C  V  L  N  G  R  R  T  N  :  C  V  I  P  K  E  N  N  F  K  Q  A  G  E  R  Y  R  S  W  E  P  D  R :   Q  D  R  Y  I  N  K  W  V  E  S  L  S  D  P  R  V  T  H  E  I  R  S  I  W  I  S  Y  L  S  Q  :  A  D  K  S  C  G  Q  K  V  A  S  R  L  T  V  K  P  T  M  *  K  I  N  E  N  S  *  N  G  F  K  L  Q  M  L  K  D  *  C  K  K  T  S  A  L  C  Y  K  L  Y  F  F  F  N  R  N  V  V  F  C  I  E  F  R  C  L  V  F  L  L  *  *  C  W  N  L  N  K  F  T  V  V  C  S  M  F  H  F  L  K  L  C  N  Y  V  E  F  L  F  T  L  V  L  E  E  H  T  L  N  F  N  N  I  T  F  I  S  V  S  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0115G22.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16781" stop="16713"/>
                    <exon start="15496" stop="15400"/>
                    <exon start="15289" stop="15012"/>
                    <exon start="14914" stop="14138"/>
                    <exon start="14049" stop="13960"/>
                    <exon start="13872" stop="13805"/>
                    <exon start="13714" stop="13621"/>
                    <exon start="13522" stop="13463"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1530</number_coding_nucleotides>
                  <number_encoded_amino_acids>510</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVYRSKGSLFNSSFISITMDPSKYRPSSAYDTPFLTTNAGGPVYNNVSSLTVGPRGPVLLEDYYLIEKLATFDREKIPERVVHARGASAKGFFEVTHDISHLTCADFLRAPGAQTPVICRFSTVVHERGSPESIRDIRGFAVKFYTREGNFDLVGNNVPVFFNRDAKSFPDTIRALKPNPKSHIQENWRILDFFSFLPESLHTFAFFYDDVCLPTDYRHMEGFGVHAYQLINKEGKAHYVKFHWKPTCGVKCMSEEEAIRVGGTNHSHATKDLYDSIAAGNYPEWKLFIQTMDPEDVDKFDFDPLDVTKTWPEDLLPLIPVGRLVLNRNIDNFFAENEQLAFNPGHIVPGIYYSEDKLLQTRIFAYADTQRHRIGPNYMQLPVNAPKCGHHNNHRDGAMNMTHRDEEVDYLPSRFDPCRPAEQYPIPSCVLNGRRTNCVIPKENNFKQAGERYRSWEPDRQDRYINKWVESLSDPRVTHEIRSIWISYLSQADKSCGQKVASRLTVKPTM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="16795" e_stop="16713"/>
            <exon e_start="15496" e_stop="15400"/>
            <exon e_start="15289" e_stop="15012"/>
            <exon e_start="14914" e_stop="14138"/>
            <exon e_start="14049" e_stop="13960"/>
            <exon e_start="13872" e_stop="13805"/>
            <exon e_start="13714" e_stop="13621"/>
            <exon e_start="13522" e_stop="13225"/>
            <exon e_start="11736" e_stop="11716"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.813" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.441" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.579" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.762"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16795" e_stop="16713" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15496" e_stop="15400" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.973">
            <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15289" e_stop="15012" e_length="278"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="14914" e_stop="14138" e_length="777"/>
          </exon>
          <intron i_serial="4" don_prob="0.813" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="14049" e_stop="13960" e_length="90"/>
          </exon>
          <intron i_serial="5" don_prob="0.441" acc_prob="0.998">
            <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="13872" e_stop="13805" e_length="68"/>
          </exon>
          <intron i_serial="6" don_prob="0.916" acc_prob="0.990">
            <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="13714" e_stop="13621" e_length="94"/>
          </exon>
          <intron i_serial="7" don_prob="0.971" acc_prob="0.579">
            <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="13522" e_stop="13225" e_length="298"/>
          </exon>
          <intron i_serial="8" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="13224" i_stop="11737" i_length="1488"/>
          </intron>
          <exon e_serial="9" e_score="0.762">
            <gDNA_exon_boundary e_start="11736" e_stop="11716" e_length="21"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16795" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16794" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16794" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16794" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16794" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16793" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16792" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16792" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16792" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723917" strand="+"/>
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              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274205" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14282" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14281" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13355"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14280" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13418"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14266" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349316" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14264" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14258" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13233"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353705" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14258" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353404" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14258" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13299"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352706" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14258" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13451"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255827" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14227" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286721" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14220" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14220" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14211" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14211" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14204" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255627" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14180" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309758" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14179" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257084" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14179" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E285193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14170" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13230"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249321" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14159" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14041" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14039" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14039" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14039" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14039" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14007" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13970" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13225"/>
              <exon start="11736" stop="11716"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251518" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13965" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13844" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13821" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239214" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13672" stop="13621"/>
              <exon start="13522" stop="13278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239127" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13495" stop="13283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239107" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACACCAAACATAAACTGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG : TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG : GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG : GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG : GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT : TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG : GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG : GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCA : AAAACAACAAAATAAGAATAA</gDNA_template>
            <first_frame> H  T  K  H  K  L  F  I  D  Q  K  A  L  S  S  I  L  L  S  F  P  S  P  W  I  P  L  S :   I  A  H  Q  A  H  T  T  P  L  S  *  Q  Q  M  L  V  V  L  C  T  T  M  F  L  P  *  L  L  D  L  E  :  G  L  F  C  L  R  I  T  I  *  L  R  S  S  R  H  L  I  A  R  R  Y  L  N  V  L  F  M  L  E  V  L  V  L  R  D  S  L  K  L  L  M  T  F  L  I  L  L  V  L  I  F  S  E  L  L  A  L  K  R  L  L  F  V  D  S  L  L  L  S  M  N  V  E  A  P  S  L  S  G  T  F  V  V  L  L  S  S  S  T  P  E  R :   V  T  L  I  L  L  E  T  M  S  P  C  S  L  I  V  M  L  S  R  S  L  T  R  F  V  H  *  N  Q  I  Q  S  H  T  F  R  R  T  G  G  Y  L  I  S  S  R  S  F  L  R  V  C  I  H  S  P  S  S  T  M  M  F  V  S  Q  R  I  T  D  T  W  K  V  L  A  F  T  R  I  N  *  L  T  K  R  G  K  H  I  M  *  S  S  T  G  S  Q  L  V  V  *  N  V  C  L  R  K  K  L  L  E  S  V  V  L  I  I  A  T  R  P  R  I  F  T  I  Q  L  L  L  E  T  I  L  S  G  S  F  L  S  K  Q  W  T  P  R  M  *  T  S  S  I  L  I  L  W  M  *  P  R  H  G  L  R  I  S  C  R  *  S  Q  L  V  D  W  C  *  T  G  T  L  I  T  S  S  Q  R  M  N  N  S  R  L  T  L  D  I  L  S  L  V  F  T  I  P  R  I  S  F  S  R  L  G  Y  S  R  M  L  I  L  R  D  T  V  L  D  Q  T  I  C  S  S  Q  L  M  L  P  S  V  V  I  T  T  I  I  A  M  V  L  *  T  *  H  I  A  M  K  R :   W  I  I  C  P  R  G  L  I  L  V  V  L  L  S  S  T  R  F  L  L  V  S  *  M  E  G  V  Q  I :   V  S  F  R  K  K  T  T  S  N  R  Q  G  R  G  T  D  H  G  N  L  T   : G  K  T  D  T  S  T  N  G  L  S  L  Y  P  I  H  E  S  L  M  R  F  A  A  Y  G  Y  H  T  C  L  R :   L  T  S  P  V  V  R  R  S  L  L  V  S  L  *  S  L  Q  C  E  K  S  M  K  I  V  E  M  V  S  S  C  K  C  *  R  T  N  A  K  K  R  P  R  C  A  I  N  C  T  S  F  S  I  V  M  L  Y  F  V  S  N  F  D  V  L  C  F  Y  Y  N  D  V  G  T  *  I  S  S  Q  L  Y  V  Q  C  F  T  F  *  S  Y  V  I  M  L  S  S  C  S  :  K  T  T  K  *  E  * </first_frame>
            <second_frame>  T  P  N  I  N  C  L  *  I  K  R  L  S  L  Q  F  F  F  H  F  H  H  H  G  S  L  *   : V  S  P  I  K  R  I  R  H  P  F  L  D  N  K  C  W  W  S  C  V  Q  Q  C  F  F  L  D  C  W  T  *  R :   A  C  S  A  *  G  L  L  S  N  *  E  A  R  D  I  *  S  R  E  D  T  *  T  C  C  S  C  *  R  C  *  C  *  G  I  L  *  S  Y  S  *  H  F  S  S  Y  L  C  *  F  S  P  S  S  W  R  S  N  A  C  Y  L  S  I  L  Y  C  C  P  *  T  W  K  P  R  V  Y  Q  G  H  S  W  F  C  C  Q  V  L  H  Q  R   : G  *  L  *  S  C  W  K  Q  C  P  R  V  L  *  S  *  C  *  V  V  P  *  H  D  S  C  I  E  T  K  S  K  V  T  H  S  G  E  L  E  D  T  *  F  L  L  V  P  S  *  E  F  A  Y  I  R  L  L  L  R  *  C  L  S  P  N  G  L  Q  T  H  G  R  F  W  R  S  R  V  S  I  D  *  Q  R  G  E  S  T  L  C  E  V  P  L  E  A  N  L  W  C  E  M  Y  V  *  G  R  S  Y  *  S  R  W  Y  *  S  *  P  R  D  Q  G  S  L  R  F  N  C  C  W  K  L  S  *  V  E  A  F  Y  P  N  N  G  P  R  G  C  R  Q  V  R  F  *  S  S  G  C  N  Q  D  M  A  *  G  S  L  A  V  D  P  S  W  S  I  G  V  E  Q  E  H  *  *  L  L  R  R  E  *  T  T  R  V  *  P  W  T  Y  C  P  W  Y  L  L  F  R  G  *  A  S  P  D  *  D  I  R  V  C  *  Y  S  E  T  P  Y  W  T  K  L  Y  A  A  P  S  *  C  S  Q  V  W  S  S  Q  Q  S  S  R  W  C  Y  E  H  D  T  S  R  *  R   : G  G  L  F  A  L  E  V  *  S  L  S  S  C  *  A  V  P  D  S  F  L  C  L  E  W  K  A  Y  K   : L  C  H  S  E  R  K  Q  L  Q  T  G  R  G  E  V  Q  I  M  G  T  *  Q  :  A  R  Q  I  H  Q  Q  M  G  *  V  F  I  R  S  T  S  H  S  *  D  S  Q  H  M  D  I  I  L  V  S   : G  *  Q  V  L  W  S  E  G  R  F  S  S  H  C  E  A  Y  N  V  K  N  Q  *  K  *  L  K  W  F  Q  A  A  N  V  E  G  L  M  Q  K  N  V  R  V  V  L  *  T  V  L  L  F  Q  S  *  C  C  I  L  Y  R  I  S  M  S  C  V  F  T  I  M  M  L  E  P  E  *  V  H  S  C  M  F  N  V  S  L  S  K  V  M  *  L  C  *  V  L  V  Q :   K  Q  Q  N  K  N   </second_frame>
            <third_frame>   H  Q  T  *  T  V  Y  R  S  K  G  S  L  F  N  S  S  F  I  S  I  T  M  D  P  S  K  :  Y  R  P  S  S  A  Y  D  T  P  F  L  T  T  N  A  G  G  P  V  Y  N  N  V  S  S  L  T  V  G  P  R   : G  P  V  L  L  E  D  Y  Y  L  I  E  K  L  A  T  F  D  R  E  K  I  P  E  R  V  V  H  A  R  G  A  S  A  K  G  F  F  E  V  T  H  D  I  S  H  L  T  C  A  D  F  L  R  A  P  G  A  Q  T  P  V  I  C  R  F  S  T  V  V  H  E  R  G  S  P  E  S  I  R  D  I  R  G  F  A  V  K  F  Y  T  R  E  :  G  N  F  D  L  V  G  N  N  V  P  V  F  F  N  R  D  A  K  S  F  P  D  T  I  R  A  L  K  P  N  P  K  S  H  I  Q  E  N  W  R  I  L  D  F  F  S  F  L  P  E  S  L  H  T  F  A  F  F  Y  D  D  V  C  L  P  T  D  Y  R  H  M  E  G  F  G  V  H  A  Y  Q  L  I  N  K  E  G  K  A  H  Y  V  K  F  H  W  K  P  T  C  G  V  K  C  M  S  E  E  E  A  I  R  V  G  G  T  N  H  S  H  A  T  K  D  L  Y  D  S  I  A  A  G  N  Y  P  E  W  K  L  F  I  Q  T  M  D  P  E  D  V  D  K  F  D  F  D  P  L  D  V  T  K  T  W  P  E  D  L  L  P  L  I  P  V  G  R  L  V  L  N  R  N  I  D  N  F  F  A  E  N  E  Q  L  A  F  N  P  G  H  I  V  P  G  I  Y  Y  S  E  D  K  L  L  Q  T  R  I  F  A  Y  A  D  T  Q  R  H  R  I  G  P  N  Y  M  Q  L  P  V  N  A  P  K  C  G  H  H  N  N  H  R  D  G  A  M  N  M  T  H  R  D  E  E  :  V  D  Y  L  P  S  R  F  D  P  C  R  P  A  E  Q  Y  P  I  P  S  C  V  L  N  G  R  R  T  N  :  C  V  I  P  K  E  N  N  F  K  Q  A  G  E  R  Y  R  S  W  E  P  D  R :   Q  D  R  Y  I  N  K  W  V  E  S  L  S  D  P  R  V  T  H  E  I  R  S  I  W  I  S  Y  L  S  Q  :  A  D  K  S  C  G  Q  K  V  A  S  R  L  T  V  K  P  T  M  *  K  I  N  E  N  S  *  N  G  F  K  L  Q  M  L  K  D  *  C  K  K  T  S  A  L  C  Y  K  L  Y  F  F  F  N  R  N  V  V  F  C  I  E  F  R  C  L  V  F  L  L  *  *  C  W  N  L  N  K  F  T  V  V  C  S  M  F  H  F  L  K  L  C  N  Y  V  E  F  L  F   : K  N  N  K  I  R  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0115G22.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16781" stop="16713"/>
                    <exon start="15496" stop="15400"/>
                    <exon start="15289" stop="15012"/>
                    <exon start="14914" stop="14138"/>
                    <exon start="14049" stop="13960"/>
                    <exon start="13872" stop="13805"/>
                    <exon start="13714" stop="13621"/>
                    <exon start="13522" stop="13463"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1530</number_coding_nucleotides>
                  <number_encoded_amino_acids>510</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVYRSKGSLFNSSFISITMDPSKYRPSSAYDTPFLTTNAGGPVYNNVSSLTVGPRGPVLLEDYYLIEKLATFDREKIPERVVHARGASAKGFFEVTHDISHLTCADFLRAPGAQTPVICRFSTVVHERGSPESIRDIRGFAVKFYTREGNFDLVGNNVPVFFNRDAKSFPDTIRALKPNPKSHIQENWRILDFFSFLPESLHTFAFFYDDVCLPTDYRHMEGFGVHAYQLINKEGKAHYVKFHWKPTCGVKCMSEEEAIRVGGTNHSHATKDLYDSIAAGNYPEWKLFIQTMDPEDVDKFDFDPLDVTKTWPEDLLPLIPVGRLVLNRNIDNFFAENEQLAFNPGHIVPGIYYSEDKLLQTRIFAYADTQRHRIGPNYMQLPVNAPKCGHHNNHRDGAMNMTHRDEEVDYLPSRFDPCRPAEQYPIPSCVLNGRRTNCVIPKENNFKQAGERYRSWEPDRQDRYINKWVESLSDPRVTHEIRSIWISYLSQADKSCGQKVASRLTVKPTM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="16795" e_stop="16713"/>
            <exon e_start="15496" e_stop="15400"/>
            <exon e_start="15289" e_stop="15012"/>
            <exon e_start="14914" e_stop="14138"/>
            <exon e_start="14049" e_stop="13960"/>
            <exon e_start="13872" e_stop="13805"/>
            <exon e_start="13714" e_stop="13164"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.813" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.441" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16795" e_stop="16713" e_length="83"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15496" e_stop="15400" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.973">
            <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15289" e_stop="15012" e_length="278"/>
          </exon>
          <intron i_serial="3" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="14914" e_stop="14138" e_length="777"/>
          </exon>
          <intron i_serial="4" don_prob="0.813" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="14049" e_stop="13960" e_length="90"/>
          </exon>
          <intron i_serial="5" don_prob="0.441" acc_prob="0.998">
            <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="13872" e_stop="13805" e_length="68"/>
          </exon>
          <intron i_serial="6" don_prob="0.916" acc_prob="0.990">
            <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="13714" e_stop="13164" e_length="551"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16795" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E719317" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16794" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E722478" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16794" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723589" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16794" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16794" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718004" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16793" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14741"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723853" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16792" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16792" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720819" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16792" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14613"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723917" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16790" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E723239" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16786" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14592"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726916" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16782" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704267" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16782" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340951" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16782" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16782" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16780" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704219" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16779" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699506" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16779" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14738"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E317788" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16779" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16778" stop="16713"/>
              <exon start="15496" stop="15400"/>
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            <referenceDNA id="SGN-E338175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14654" stop="14142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14653" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14639" stop="14142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14638" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14635" stop="14138"/>
              <exon start="14049" stop="14019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14635" stop="14224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14632" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257347" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14632" stop="14138"/>
              <exon start="14049" stop="13974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259384" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14632" stop="14138"/>
              <exon start="14049" stop="13995"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14632" stop="14138"/>
              <exon start="14049" stop="13996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14628" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263199" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14609" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13812"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210504" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14609" stop="14142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14591" stop="14138"/>
              <exon start="14049" stop="13996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276793" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14587" stop="14142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14581" stop="14138"/>
              <exon start="14049" stop="13965"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14566" stop="14138"/>
              <exon start="14049" stop="14038"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14557" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13808"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275274" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14556" stop="14138"/>
              <exon start="14049" stop="13974"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266656" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14554" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13866"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256935" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14524" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13849"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255500" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14521" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13628"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14502" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14498" stop="14138"/>
              <exon start="14049" stop="13993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14487" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253628" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14474" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275204" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14474" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275242" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14460" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13625"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14460" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13630"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254601" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14434" stop="14138"/>
              <exon start="14049" stop="14019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14401" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13624"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14282" stop="14138"/>
              <exon start="14049" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13623"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258923" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13684" stop="13283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238911" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13672" stop="13172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13590" stop="13170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217462" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13518" stop="13172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13495" stop="13283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239107" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13462" stop="13208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283079" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13451" stop="13164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234849" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="3" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CACACCAAACATAAACTGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG : TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG : GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG : GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG : GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT : TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG : GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGTTTGAGTTCTTCTCTTCATTTCCATGATTCATTTTAGCCTAATAAAACGCGGTGATTAAACAAAACCAATCTTTTTCTTCGCGTGCATACATTGCAGGCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGTATCTCA</gDNA_template>
            <first_frame> H  T  K  H  K  L  F  I  D  Q  K  A  L  S  S  I  L  L  S  F  P  S  P  W  I  P  L  S :   I  A  H  Q  A  H  T  T  P  L  S  *  Q  Q  M  L  V  V  L  C  T  T  M  F  L  P  *  L  L  D  L  E  :  G  L  F  C  L  R  I  T  I  *  L  R  S  S  R  H  L  I  A  R  R  Y  L  N  V  L  F  M  L  E  V  L  V  L  R  D  S  L  K  L  L  M  T  F  L  I  L  L  V  L  I  F  S  E  L  L  A  L  K  R  L  L  F  V  D  S  L  L  L  S  M  N  V  E  A  P  S  L  S  G  T  F  V  V  L  L  S  S  S  T  P  E  R :   V  T  L  I  L  L  E  T  M  S  P  C  S  L  I  V  M  L  S  R  S  L  T  R  F  V  H  *  N  Q  I  Q  S  H  T  F  R  R  T  G  G  Y  L  I  S  S  R  S  F  L  R  V  C  I  H  S  P  S  S  T  M  M  F  V  S  Q  R  I  T  D  T  W  K  V  L  A  F  T  R  I  N  *  L  T  K  R  G  K  H  I  M  *  S  S  T  G  S  Q  L  V  V  *  N  V  C  L  R  K  K  L  L  E  S  V  V  L  I  I  A  T  R  P  R  I  F  T  I  Q  L  L  L  E  T  I  L  S  G  S  F  L  S  K  Q  W  T  P  R  M  *  T  S  S  I  L  I  L  W  M  *  P  R  H  G  L  R  I  S  C  R  *  S  Q  L  V  D  W  C  *  T  G  T  L  I  T  S  S  Q  R  M  N  N  S  R  L  T  L  D  I  L  S  L  V  F  T  I  P  R  I  S  F  S  R  L  G  Y  S  R  M  L  I  L  R  D  T  V  L  D  Q  T  I  C  S  S  Q  L  M  L  P  S  V  V  I  T  T  I  I  A  M  V  L  *  T  *  H  I  A  M  K  R :   W  I  I  C  P  R  G  L  I  L  V  V  L  L  S  S  T  R  F  L  L  V  S  *  M  E  G  V  Q  I :   V  S  F  R  K  K  T  T  S  N  R  Q  G  R  G  T  D  H  G  N  L  T   : G  K  T  D  T  S  T  N  G  L  S  L  Y  P  I  H  E  S  L  M  R  F  A  A  Y  G  Y  H  T  C  L  R  F  E  F  F  S  S  F  P  *  F  I  L  A  *  *  N  A  V  I  K  Q  N  Q  S  F  S  S  R  A  Y  I  A  G  *  Q  V  L  W  S  E  G  R  F  S  S  H  C  E  A  Y  N  V  K  N  Q  *  K  *  L  K  W  F  Q  A  A  N  V  E  G  L  M  Q  K  N  V  R  V  V  L  *  T  V  L  L  F  Q  S  *  C  C  I  L  Y  R  I  S  M  S  C  V  F  T  I  M  M  L  E  P  E  *  V  H  S  C  M  F  N  V  S  L  S  K  V  M  *  L  C  *  V  L  V  H  F  G  A  *  R  T  H  S  Q  F  Q  *  Y  H  F  H  F  S  I  S </first_frame>
            <second_frame>  T  P  N  I  N  C  L  *  I  K  R  L  S  L  Q  F  F  F  H  F  H  H  H  G  S  L  *   : V  S  P  I  K  R  I  R  H  P  F  L  D  N  K  C  W  W  S  C  V  Q  Q  C  F  F  L  D  C  W  T  *  R :   A  C  S  A  *  G  L  L  S  N  *  E  A  R  D  I  *  S  R  E  D  T  *  T  C  C  S  C  *  R  C  *  C  *  G  I  L  *  S  Y  S  *  H  F  S  S  Y  L  C  *  F  S  P  S  S  W  R  S  N  A  C  Y  L  S  I  L  Y  C  C  P  *  T  W  K  P  R  V  Y  Q  G  H  S  W  F  C  C  Q  V  L  H  Q  R   : G  *  L  *  S  C  W  K  Q  C  P  R  V  L  *  S  *  C  *  V  V  P  *  H  D  S  C  I  E  T  K  S  K  V  T  H  S  G  E  L  E  D  T  *  F  L  L  V  P  S  *  E  F  A  Y  I  R  L  L  L  R  *  C  L  S  P  N  G  L  Q  T  H  G  R  F  W  R  S  R  V  S  I  D  *  Q  R  G  E  S  T  L  C  E  V  P  L  E  A  N  L  W  C  E  M  Y  V  *  G  R  S  Y  *  S  R  W  Y  *  S  *  P  R  D  Q  G  S  L  R  F  N  C  C  W  K  L  S  *  V  E  A  F  Y  P  N  N  G  P  R  G  C  R  Q  V  R  F  *  S  S  G  C  N  Q  D  M  A  *  G  S  L  A  V  D  P  S  W  S  I  G  V  E  Q  E  H  *  *  L  L  R  R  E  *  T  T  R  V  *  P  W  T  Y  C  P  W  Y  L  L  F  R  G  *  A  S  P  D  *  D  I  R  V  C  *  Y  S  E  T  P  Y  W  T  K  L  Y  A  A  P  S  *  C  S  Q  V  W  S  S  Q  Q  S  S  R  W  C  Y  E  H  D  T  S  R  *  R   : G  G  L  F  A  L  E  V  *  S  L  S  S  C  *  A  V  P  D  S  F  L  C  L  E  W  K  A  Y  K   : L  C  H  S  E  R  K  Q  L  Q  T  G  R  G  E  V  Q  I  M  G  T  *  Q  :  A  R  Q  I  H  Q  Q  M  G  *  V  F  I  R  S  T  S  H  S  *  D  S  Q  H  M  D  I  I  L  V  S  G  L  S  S  S  L  H  F  H  D  S  F  *  P  N  K  T  R  *  L  N  K  T  N  L  F  L  R  V  H  T  L  Q  A  D  K  S  C  G  Q  K  V  A  S  R  L  T  V  K  P  T  M  *  K  I  N  E  N  S  *  N  G  F  K  L  Q  M  L  K  D  *  C  K  K  T  S  A  L  C  Y  K  L  Y  F  F  F  N  R  N  V  V  F  C  I  E  F  R  C  L  V  F  L  L  *  *  C  W  N  L  N  K  F  T  V  V  C  S  M  F  H  F  L  K  L  C  N  Y  V  E  F  L  F  T  L  V  L  E  E  H  T  L  N  F  N  N  I  T  F  I  S  V  S   </second_frame>
            <third_frame>   H  Q  T  *  T  V  Y  R  S  K  G  S  L  F  N  S  S  F  I  S  I  T  M  D  P  S  K  :  Y  R  P  S  S  A  Y  D  T  P  F  L  T  T  N  A  G  G  P  V  Y  N  N  V  S  S  L  T  V  G  P  R   : G  P  V  L  L  E  D  Y  Y  L  I  E  K  L  A  T  F  D  R  E  K  I  P  E  R  V  V  H  A  R  G  A  S  A  K  G  F  F  E  V  T  H  D  I  S  H  L  T  C  A  D  F  L  R  A  P  G  A  Q  T  P  V  I  C  R  F  S  T  V  V  H  E  R  G  S  P  E  S  I  R  D  I  R  G  F  A  V  K  F  Y  T  R  E  :  G  N  F  D  L  V  G  N  N  V  P  V  F  F  N  R  D  A  K  S  F  P  D  T  I  R  A  L  K  P  N  P  K  S  H  I  Q  E  N  W  R  I  L  D  F  F  S  F  L  P  E  S  L  H  T  F  A  F  F  Y  D  D  V  C  L  P  T  D  Y  R  H  M  E  G  F  G  V  H  A  Y  Q  L  I  N  K  E  G  K  A  H  Y  V  K  F  H  W  K  P  T  C  G  V  K  C  M  S  E  E  E  A  I  R  V  G  G  T  N  H  S  H  A  T  K  D  L  Y  D  S  I  A  A  G  N  Y  P  E  W  K  L  F  I  Q  T  M  D  P  E  D  V  D  K  F  D  F  D  P  L  D  V  T  K  T  W  P  E  D  L  L  P  L  I  P  V  G  R  L  V  L  N  R  N  I  D  N  F  F  A  E  N  E  Q  L  A  F  N  P  G  H  I  V  P  G  I  Y  Y  S  E  D  K  L  L  Q  T  R  I  F  A  Y  A  D  T  Q  R  H  R  I  G  P  N  Y  M  Q  L  P  V  N  A  P  K  C  G  H  H  N  N  H  R  D  G  A  M  N  M  T  H  R  D  E  E  :  V  D  Y  L  P  S  R  F  D  P  C  R  P  A  E  Q  Y  P  I  P  S  C  V  L  N  G  R  R  T  N  :  C  V  I  P  K  E  N  N  F  K  Q  A  G  E  R  Y  R  S  W  E  P  D  R :   Q  D  R  Y  I  N  K  W  V  E  S  L  S  D  P  R  V  T  H  E  I  R  S  I  W  I  S  Y  L  S  Q  V  *  V  L  L  F  I  S  M  I  H  F  S  L  I  K  R  G  D  *  T  K  P  I  F  F  F  A  C  I  H  C  R  L  T  S  P  V  V  R  R  S  L  L  V  S  L  *  S  L  Q  C  E  K  S  M  K  I  V  E  M  V  S  S  C  K  C  *  R  T  N  A  K  K  R  P  R  C  A  I  N  C  T  S  F  S  I  V  M  L  Y  F  V  S  N  F  D  V  L  C  F  Y  Y  N  D  V  G  T  *  I  S  S  Q  L  Y  V  Q  C  F  T  F  *  S  Y  V  I  M  L  S  S  C  S  L  W  C  L  K  N  T  L  S  I  S  I  I  S  L  S  F  Q  Y  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0115G22.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16781" stop="16713"/>
                    <exon start="15496" stop="15400"/>
                    <exon start="15289" stop="15012"/>
                    <exon start="14914" stop="14138"/>
                    <exon start="14049" stop="13960"/>
                    <exon start="13872" stop="13805"/>
                    <exon start="13714" stop="13615"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1476</number_coding_nucleotides>
                  <number_encoded_amino_acids>492</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVYRSKGSLFNSSFISITMDPSKYRPSSAYDTPFLTTNAGGPVYNNVSSLTVGPRGPVLLEDYYLIEKLATFDREKIPERVVHARGASAKGFFEVTHDISHLTCADFLRAPGAQTPVICRFSTVVHERGSPESIRDIRGFAVKFYTREGNFDLVGNNVPVFFNRDAKSFPDTIRALKPNPKSHIQENWRILDFFSFLPESLHTFAFFYDDVCLPTDYRHMEGFGVHAYQLINKEGKAHYVKFHWKPTCGVKCMSEEEAIRVGGTNHSHATKDLYDSIAAGNYPEWKLFIQTMDPEDVDKFDFDPLDVTKTWPEDLLPLIPVGRLVLNRNIDNFFAENEQLAFNPGHIVPGIYYSEDKLLQTRIFAYADTQRHRIGPNYMQLPVNAPKCGHHNNHRDGAMNMTHRDEEVDYLPSRFDPCRPAEQYPIPSCVLNGRRTNCVIPKENNFKQAGERYRSWEPDRQDRYINKWVESLSDPRVTHEIRSIWISYLSQV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="15502" e_stop="15400"/>
            <exon e_start="15289" e_stop="15012"/>
            <exon e_start="14914" e_stop="14138"/>
            <exon e_start="14049" e_stop="13960"/>
            <exon e_start="13872" e_stop="13805"/>
            <exon e_start="13714" e_stop="13621"/>
            <exon e_start="13522" e_stop="13162"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.979" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.813" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.441" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.579" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="15502" e_stop="15400" e_length="103"/>
          </exon>
          <intron i_serial="1" don_prob="0.979" acc_prob="0.973">
            <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15289" e_stop="15012" e_length="278"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.998">
            <gDNA_intron_boundary i_start="15011" i_stop="14915" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="14914" e_stop="14138" e_length="777"/>
          </exon>
          <intron i_serial="3" don_prob="0.813" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="14049" e_stop="13960" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.441" acc_prob="0.998">
            <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="13872" e_stop="13805" e_length="68"/>
          </exon>
          <intron i_serial="5" don_prob="0.916" acc_prob="0.990">
            <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="13714" e_stop="13621" e_length="94"/>
          </exon>
          <intron i_serial="6" don_prob="0.971" acc_prob="0.579">
            <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="13522" e_stop="13162" e_length="361"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15502" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14764"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E718765" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14774"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338503" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15491" stop="15400"/>
              <exon start="15289" stop="15135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15490" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14782"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15490" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14864"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15485" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292751" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15471" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E717613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15466" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14883"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E720702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15443" stop="15400"/>
              <exon start="15289" stop="15012"/>
              <exon start="14914" stop="14775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15258" stop="15012"/>
              <exon start="14914" stop="14638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252458" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15247" stop="15012"/>
              <exon start="14914" stop="14636"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E269153" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15246" stop="15012"/>
              <exon start="14914" stop="14598"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15242" stop="15012"/>
              <exon start="14914" stop="14591"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15240" stop="15012"/>
              <exon start="14914" stop="14867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205626" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15235" stop="15012"/>
              <exon start="14914" stop="14596"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209930" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15233" stop="15012"/>
              <exon start="14914" stop="14554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15231" stop="15012"/>
              <exon start="14914" stop="14410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15223" stop="15012"/>
              <exon start="14914" stop="14439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15210" stop="15012"/>
              <exon start="14914" stop="14783"/>
            </gDNA_exon_coordinates>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13863" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13858" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13857" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13852" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13844" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13824" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216987" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13824" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274505" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13821" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239214" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13811" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13707" stop="13621"/>
              <exon start="13522" stop="13177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203495" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13694" stop="13621"/>
              <exon start="13522" stop="13170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217310" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13686" stop="13621"/>
              <exon start="13522" stop="13170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218637" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13672" stop="13621"/>
              <exon start="13522" stop="13278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239127" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13647" stop="13621"/>
              <exon start="13522" stop="13170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13518" stop="13172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13495" stop="13283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239107" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13462" stop="13208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283079" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13451" stop="13164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234849" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="4" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACACAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG : GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG : GGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG : GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT : TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG : GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG : GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGTATCTCAGC</gDNA_template>
            <first_frame> T  Q  Y  R  P  S  S  A  Y  D  T  P  F  L  T  T  N  A  G  G  P  V  Y  N  N  V  S  S  L  T  V  G  P  R   : G  P  V  L  L  E  D  Y  Y  L  I  E  K  L  A  T  F  D  R  E  K  I  P  E  R  V  V  H  A  R  G  A  S  A  K  G  F  F  E  V  T  H  D  I  S  H  L  T  C  A  D  F  L  R  A  P  G  A  Q  T  P  V  I  C  R  F  S  T  V  V  H  E  R  G  S  P  E  S  I  R  D  I  R  G  F  A  V  K  F  Y  T  R  E  :  G  N  F  D  L  V  G  N  N  V  P  V  F  F  N  R  D  A  K  S  F  P  D  T  I  R  A  L  K  P  N  P  K  S  H  I  Q  E  N  W  R  I  L  D  F  F  S  F  L  P  E  S  L  H  T  F  A  F  F  Y  D  D  V  C  L  P  T  D  Y  R  H  M  E  G  F  G  V  H  A  Y  Q  L  I  N  K  E  G  K  A  H  Y  V  K  F  H  W  K  P  T  C  G  V  K  C  M  S  E  E  E  A  I  R  V  G  G  T  N  H  S  H  A  T  K  D  L  Y  D  S  I  A  A  G  N  Y  P  E  W  K  L  F  I  Q  T  M  D  P  E  D  V  D  K  F  D  F  D  P  L  D  V  T  K  T  W  P  E  D  L  L  P  L  I  P  V  G  R  L  V  L  N  R  N  I  D  N  F  F  A  E  N  E  Q  L  A  F  N  P  G  H  I  V  P  G  I  Y  Y  S  E  D  K  L  L  Q  T  R  I  F  A  Y  A  D  T  Q  R  H  R  I  G  P  N  Y  M  Q  L  P  V  N  A  P  K  C  G  H  H  N  N  H  R  D  G  A  M  N  M  T  H  R  D  E  E  :  V  D  Y  L  P  S  R  F  D  P  C  R  P  A  E  Q  Y  P  I  P  S  C  V  L  N  G  R  R  T  N  :  C  V  I  P  K  E  N  N  F  K  Q  A  G  E  R  Y  R  S  W  E  P  D  R :   Q  D  R  Y  I  N  K  W  V  E  S  L  S  D  P  R  V  T  H  E  I  R  S  I  W  I  S  Y  L  S  Q  :  A  D  K  S  C  G  Q  K  V  A  S  R  L  T  V  K  P  T  M  *  K  I  N  E  N  S  *  N  G  F  K  L  Q  M  L  K  D  *  C  K  K  T  S  A  L  C  Y  K  L  Y  F  F  F  N  R  N  V  V  F  C  I  E  F  R  C  L  V  F  L  L  *  *  C  W  N  L  N  K  F  T  V  V  C  S  M  F  H  F  L  K  L  C  N  Y  V  E  F  L  F  T  L  V  L  E  E  H  T  L  N  F  N  N  I  T  F  I  S  V  S  Q  </first_frame>
            <second_frame>  H  S  I  A  H  Q  A  H  T  T  P  L  S  *  Q  Q  M  L  V  V  L  C  T  T  M  F  L  P  *  L  L  D  L  E  :  G  L  F  C  L  R  I  T  I  *  L  R  S  S  R  H  L  I  A  R  R  Y  L  N  V  L  F  M  L  E  V  L  V  L  R  D  S  L  K  L  L  M  T  F  L  I  L  L  V  L  I  F  S  E  L  L  A  L  K  R  L  L  F  V  D  S  L  L  L  S  M  N  V  E  A  P  S  L  S  G  T  F  V  V  L  L  S  S  S  T  P  E  R :   V  T  L  I  L  L  E  T  M  S  P  C  S  L  I  V  M  L  S  R  S  L  T  R  F  V  H  *  N  Q  I  Q  S  H  T  F  R  R  T  G  G  Y  L  I  S  S  R  S  F  L  R  V  C  I  H  S  P  S  S  T  M  M  F  V  S  Q  R  I  T  D  T  W  K  V  L  A  F  T  R  I  N  *  L  T  K  R  G  K  H  I  M  *  S  S  T  G  S  Q  L  V  V  *  N  V  C  L  R  K  K  L  L  E  S  V  V  L  I  I  A  T  R  P  R  I  F  T  I  Q  L  L  L  E  T  I  L  S  G  S  F  L  S  K  Q  W  T  P  R  M  *  T  S  S  I  L  I  L  W  M  *  P  R  H  G  L  R  I  S  C  R  *  S  Q  L  V  D  W  C  *  T  G  T  L  I  T  S  S  Q  R  M  N  N  S  R  L  T  L  D  I  L  S  L  V  F  T  I  P  R  I  S  F  S  R  L  G  Y  S  R  M  L  I  L  R  D  T  V  L  D  Q  T  I  C  S  S  Q  L  M  L  P  S  V  V  I  T  T  I  I  A  M  V  L  *  T  *  H  I  A  M  K  R :   W  I  I  C  P  R  G  L  I  L  V  V  L  L  S  S  T  R  F  L  L  V  S  *  M  E  G  V  Q  I :   V  S  F  R  K  K  T  T  S  N  R  Q  G  R  G  T  D  H  G  N  L  T   : G  K  T  D  T  S  T  N  G  L  S  L  Y  P  I  H  E  S  L  M  R  F  A  A  Y  G  Y  H  T  C  L  R :   L  T  S  P  V  V  R  R  S  L  L  V  S  L  *  S  L  Q  C  E  K  S  M  K  I  V  E  M  V  S  S  C  K  C  *  R  T  N  A  K  K  R  P  R  C  A  I  N  C  T  S  F  S  I  V  M  L  Y  F  V  S  N  F  D  V  L  C  F  Y  Y  N  D  V  G  T  *  I  S  S  Q  L  Y  V  Q  C  F  T  F  *  S  Y  V  I  M  L  S  S  C  S  L  W  C  L  K  N  T  L  S  I  S  I  I  S  L  S  F  Q  Y  L  S </second_frame>
            <third_frame>   T  V  S  P  I  K  R  I  R  H  P  F  L  D  N  K  C  W  W  S  C  V  Q  Q  C  F  F  L  D  C  W  T  *  R :   A  C  S  A  *  G  L  L  S  N  *  E  A  R  D  I  *  S  R  E  D  T  *  T  C  C  S  C  *  R  C  *  C  *  G  I  L  *  S  Y  S  *  H  F  S  S  Y  L  C  *  F  S  P  S  S  W  R  S  N  A  C  Y  L  S  I  L  Y  C  C  P  *  T  W  K  P  R  V  Y  Q  G  H  S  W  F  C  C  Q  V  L  H  Q  R   : G  *  L  *  S  C  W  K  Q  C  P  R  V  L  *  S  *  C  *  V  V  P  *  H  D  S  C  I  E  T  K  S  K  V  T  H  S  G  E  L  E  D  T  *  F  L  L  V  P  S  *  E  F  A  Y  I  R  L  L  L  R  *  C  L  S  P  N  G  L  Q  T  H  G  R  F  W  R  S  R  V  S  I  D  *  Q  R  G  E  S  T  L  C  E  V  P  L  E  A  N  L  W  C  E  M  Y  V  *  G  R  S  Y  *  S  R  W  Y  *  S  *  P  R  D  Q  G  S  L  R  F  N  C  C  W  K  L  S  *  V  E  A  F  Y  P  N  N  G  P  R  G  C  R  Q  V  R  F  *  S  S  G  C  N  Q  D  M  A  *  G  S  L  A  V  D  P  S  W  S  I  G  V  E  Q  E  H  *  *  L  L  R  R  E  *  T  T  R  V  *  P  W  T  Y  C  P  W  Y  L  L  F  R  G  *  A  S  P  D  *  D  I  R  V  C  *  Y  S  E  T  P  Y  W  T  K  L  Y  A  A  P  S  *  C  S  Q  V  W  S  S  Q  Q  S  S  R  W  C  Y  E  H  D  T  S  R  *  R   : G  G  L  F  A  L  E  V  *  S  L  S  S  C  *  A  V  P  D  S  F  L  C  L  E  W  K  A  Y  K   : L  C  H  S  E  R  K  Q  L  Q  T  G  R  G  E  V  Q  I  M  G  T  *  Q  :  A  R  Q  I  H  Q  Q  M  G  *  V  F  I  R  S  T  S  H  S  *  D  S  Q  H  M  D  I  I  L  V  S   : G  *  Q  V  L  W  S  E  G  R  F  S  S  H  C  E  A  Y  N  V  K  N  Q  *  K  *  L  K  W  F  Q  A  A  N  V  E  G  L  M  Q  K  N  V  R  V  V  L  *  T  V  L  L  F  Q  S  *  C  C  I  L  Y  R  I  S  M  S  C  V  F  T  I  M  M  L  E  P  E  *  V  H  S  C  M  F  N  V  S  L  S  K  V  M  *  L  C  *  V  L  V  H  F  G  A  *  R  T  H  S  Q  F  Q  *  Y  H  F  H  F  S  I  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0115G22.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15502" stop="15400"/>
                    <exon start="15289" stop="15012"/>
                    <exon start="14914" stop="14138"/>
                    <exon start="14049" stop="13960"/>
                    <exon start="13872" stop="13805"/>
                    <exon start="13714" stop="13621"/>
                    <exon start="13522" stop="13463"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1467</number_coding_nucleotides>
                  <number_encoded_amino_acids>489</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TQYRPSSAYDTPFLTTNAGGPVYNNVSSLTVGPRGPVLLEDYYLIEKLATFDREKIPERVVHARGASAKGFFEVTHDISHLTCADFLRAPGAQTPVICRFSTVVHERGSPESIRDIRGFAVKFYTREGNFDLVGNNVPVFFNRDAKSFPDTIRALKPNPKSHIQENWRILDFFSFLPESLHTFAFFYDDVCLPTDYRHMEGFGVHAYQLINKEGKAHYVKFHWKPTCGVKCMSEEEAIRVGGTNHSHATKDLYDSIAAGNYPEWKLFIQTMDPEDVDKFDFDPLDVTKTWPEDLLPLIPVGRLVLNRNIDNFFAENEQLAFNPGHIVPGIYYSEDKLLQTRIFAYADTQRHRIGPNYMQLPVNAPKCGHHNNHRDGAMNMTHRDEEVDYLPSRFDPCRPAEQYPIPSCVLNGRRTNCVIPKENNFKQAGERYRSWEPDRQDRYINKWVESLSDPRVTHEIRSIWISYLSQADKSCGQKVASRLTVKPTM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="16782" e_stop="16713"/>
            <exon e_start="15496" e_stop="15400"/>
            <exon e_start="15289" e_stop="14138"/>
            <exon e_start="14049" e_stop="13960"/>
            <exon e_start="13872" e_stop="13805"/>
            <exon e_start="13714" e_stop="13621"/>
            <exon e_start="13522" e_stop="13162"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.813" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.441" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.579" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16782" e_stop="16713" e_length="70"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15496" e_stop="15400" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.973">
            <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="15289" e_stop="14138" e_length="1152"/>
          </exon>
          <intron i_serial="3" don_prob="0.813" acc_prob="0.999">
            <gDNA_intron_boundary i_start="14137" i_stop="14050" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="14049" e_stop="13960" e_length="90"/>
          </exon>
          <intron i_serial="4" don_prob="0.441" acc_prob="0.998">
            <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="13872" e_stop="13805" e_length="68"/>
          </exon>
          <intron i_serial="5" don_prob="0.916" acc_prob="0.990">
            <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="13714" e_stop="13621" e_length="94"/>
          </exon>
          <intron i_serial="6" don_prob="0.971" acc_prob="0.579">
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          <description PGL_serial="6" AGS_serial="5" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACTGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG : TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG : GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAG : GTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT : TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG : GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG : GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGTATCTCAGC</gDNA_template>
            <first_frame> N  C  L  *  I  K  R  L  S  L  Q  F  F  F  H  F  H  H  H  G  S  L  *   : V  S  P  I  K  R  I  R  H  P  F  L  D  N  K  C  W  W  S  C  V  Q  Q  C  F  F  L  D  C  W  T  *  R :   A  C  S  A  *  G  L  L  S  N  *  E  A  R  D  I  *  S  R  E  D  T  *  T  C  C  S  C  *  R  C  *  C  *  G  I  L  *  S  Y  S  *  H  F  S  S  Y  L  C  *  F  S  P  S  S  W  R  S  N  A  C  Y  L  S  I  L  Y  C  C  P  *  T  W  K  P  R  V  Y  Q  G  H  S  W  F  C  C  Q  V  L  H  Q  R  G  N  F  V  L  I  T  *  T  *  T  *  V  T  E  S  L  I  G  F  F  V  *  N  V  M  F  *  I  D  *  L  R  V  T  L  I  L  L  E  T  M  S  P  C  S  L  I  V  M  L  S  R  S  L  T  R  F  V  H  *  N  Q  I  Q  S  H  T  F  R  R  T  G  G  Y  L  I  S  S  R  S  F  L  R  V  C  I  H  S  P  S  S  T  M  M  F  V  S  Q  R  I  T  D  T  W  K  V  L  A  F  T  R  I  N  *  L  T  K  R  G  K  H  I  M  *  S  S  T  G  S  Q  L  V  V  *  N  V  C  L  R  K  K  L  L  E  S  V  V  L  I  I  A  T  R  P  R  I  F  T  I  Q  L  L  L  E  T  I  L  S  G  S  F  L  S  K  Q  W  T  P  R  M  *  T  S  S  I  L  I  L  W  M  *  P  R  H  G  L  R  I  S  C  R  *  S  Q  L  V  D  W  C  *  T  G  T  L  I  T  S  S  Q  R  M  N  N  S  R  L  T  L  D  I  L  S  L  V  F  T  I  P  R  I  S  F  S  R  L  G  Y  S  R  M  L  I  L  R  D  T  V  L  D  Q  T  I  C  S  S  Q  L  M  L  P  S  V  V  I  T  T  I  I  A  M  V  L  *  T  *  H  I  A  M  K  R :   W  I  I  C  P  R  G  L  I  L  V  V  L  L  S  S  T  R  F  L  L  V  S  *  M  E  G  V  Q  I :   V  S  F  R  K  K  T  T  S  N  R  Q  G  R  G  T  D  H  G  N  L  T   : G  K  T  D  T  S  T  N  G  L  S  L  Y  P  I  H  E  S  L  M  R  F  A  A  Y  G  Y  H  T  C  L  R :   L  T  S  P  V  V  R  R  S  L  L  V  S  L  *  S  L  Q  C  E  K  S  M  K  I  V  E  M  V  S  S  C  K  C  *  R  T  N  A  K  K  R  P  R  C  A  I  N  C  T  S  F  S  I  V  M  L  Y  F  V  S  N  F  D  V  L  C  F  Y  Y  N  D  V  G  T  *  I  S  S  Q  L  Y  V  Q  C  F  T  F  *  S  Y  V  I  M  L  S  S  C  S  L  W  C  L  K  N  T  L  S  I  S  I  I  S  L  S  F  Q  Y  L  S </first_frame>
            <second_frame>  T  V  Y  R  S  K  G  S  L  F  N  S  S  F  I  S  I  T  M  D  P  S  K  :  Y  R  P  S  S  A  Y  D  T  P  F  L  T  T  N  A  G  G  P  V  Y  N  N  V  S  S  L  T  V  G  P  R   : G  P  V  L  L  E  D  Y  Y  L  I  E  K  L  A  T  F  D  R  E  K  I  P  E  R  V  V  H  A  R  G  A  S  A  K  G  F  F  E  V  T  H  D  I  S  H  L  T  C  A  D  F  L  R  A  P  G  A  Q  T  P  V  I  C  R  F  S  T  V  V  H  E  R  G  S  P  E  S  I  R  D  I  R  G  F  A  V  K  F  Y  T  R  E  V  I  S  C  *  L  L  E  H  E  L  R  S  R  N  L  *  L  G  F  L  F  K  M  *  C  F  E  L  I  D  S  G  *  L  *  S  C  W  K  Q  C  P  R  V  L  *  S  *  C  *  V  V  P  *  H  D  S  C  I  E  T  K  S  K  V  T  H  S  G  E  L  E  D  T  *  F  L  L  V  P  S  *  E  F  A  Y  I  R  L  L  L  R  *  C  L  S  P  N  G  L  Q  T  H  G  R  F  W  R  S  R  V  S  I  D  *  Q  R  G  E  S  T  L  C  E  V  P  L  E  A  N  L  W  C  E  M  Y  V  *  G  R  S  Y  *  S  R  W  Y  *  S  *  P  R  D  Q  G  S  L  R  F  N  C  C  W  K  L  S  *  V  E  A  F  Y  P  N  N  G  P  R  G  C  R  Q  V  R  F  *  S  S  G  C  N  Q  D  M  A  *  G  S  L  A  V  D  P  S  W  S  I  G  V  E  Q  E  H  *  *  L  L  R  R  E  *  T  T  R  V  *  P  W  T  Y  C  P  W  Y  L  L  F  R  G  *  A  S  P  D  *  D  I  R  V  C  *  Y  S  E  T  P  Y  W  T  K  L  Y  A  A  P  S  *  C  S  Q  V  W  S  S  Q  Q  S  S  R  W  C  Y  E  H  D  T  S  R  *  R   : G  G  L  F  A  L  E  V  *  S  L  S  S  C  *  A  V  P  D  S  F  L  C  L  E  W  K  A  Y  K   : L  C  H  S  E  R  K  Q  L  Q  T  G  R  G  E  V  Q  I  M  G  T  *  Q  :  A  R  Q  I  H  Q  Q  M  G  *  V  F  I  R  S  T  S  H  S  *  D  S  Q  H  M  D  I  I  L  V  S   : G  *  Q  V  L  W  S  E  G  R  F  S  S  H  C  E  A  Y  N  V  K  N  Q  *  K  *  L  K  W  F  Q  A  A  N  V  E  G  L  M  Q  K  N  V  R  V  V  L  *  T  V  L  L  F  Q  S  *  C  C  I  L  Y  R  I  S  M  S  C  V  F  T  I  M  M  L  E  P  E  *  V  H  S  C  M  F  N  V  S  L  S  K  V  M  *  L  C  *  V  L  V  H  F  G  A  *  R  T  H  S  Q  F  Q  *  Y  H  F  H  F  S  I  S   </second_frame>
            <third_frame>   L  F  I  D  Q  K  A  L  S  S  I  L  L  S  F  P  S  P  W  I  P  L  S :   I  A  H  Q  A  H  T  T  P  L  S  *  Q  Q  M  L  V  V  L  C  T  T  M  F  L  P  *  L  L  D  L  E  :  G  L  F  C  L  R  I  T  I  *  L  R  S  S  R  H  L  I  A  R  R  Y  L  N  V  L  F  M  L  E  V  L  V  L  R  D  S  L  K  L  L  M  T  F  L  I  L  L  V  L  I  F  S  E  L  L  A  L  K  R  L  L  F  V  D  S  L  L  L  S  M  N  V  E  A  P  S  L  S  G  T  F  V  V  L  L  S  S  S  T  P  E  R  *  F  R  V  N  Y  L  N  M  N  L  G  H  G  I  F  D  W  V  F  C  L  K  C  N  V  L  N  *  L  T  Q  G  N  F  D  L  V  G  N  N  V  P  V  F  F  N  R  D  A  K  S  F  P  D  T  I  R  A  L  K  P  N  P  K  S  H  I  Q  E  N  W  R  I  L  D  F  F  S  F  L  P  E  S  L  H  T  F  A  F  F  Y  D  D  V  C  L  P  T  D  Y  R  H  M  E  G  F  G  V  H  A  Y  Q  L  I  N  K  E  G  K  A  H  Y  V  K  F  H  W  K  P  T  C  G  V  K  C  M  S  E  E  E  A  I  R  V  G  G  T  N  H  S  H  A  T  K  D  L  Y  D  S  I  A  A  G  N  Y  P  E  W  K  L  F  I  Q  T  M  D  P  E  D  V  D  K  F  D  F  D  P  L  D  V  T  K  T  W  P  E  D  L  L  P  L  I  P  V  G  R  L  V  L  N  R  N  I  D  N  F  F  A  E  N  E  Q  L  A  F  N  P  G  H  I  V  P  G  I  Y  Y  S  E  D  K  L  L  Q  T  R  I  F  A  Y  A  D  T  Q  R  H  R  I  G  P  N  Y  M  Q  L  P  V  N  A  P  K  C  G  H  H  N  N  H  R  D  G  A  M  N  M  T  H  R  D  E  E  :  V  D  Y  L  P  S  R  F  D  P  C  R  P  A  E  Q  Y  P  I  P  S  C  V  L  N  G  R  R  T  N  :  C  V  I  P  K  E  N  N  F  K  Q  A  G  E  R  Y  R  S  W  E  P  D  R :   Q  D  R  Y  I  N  K  W  V  E  S  L  S  D  P  R  V  T  H  E  I  R  S  I  W  I  S  Y  L  S  Q  :  A  D  K  S  C  G  Q  K  V  A  S  R  L  T  V  K  P  T  M  *  K  I  N  E  N  S  *  N  G  F  K  L  Q  M  L  K  D  *  C  K  K  T  S  A  L  C  Y  K  L  Y  F  F  F  N  R  N  V  V  F  C  I  E  F  R  C  L  V  F  L  L  *  *  C  W  N  L  N  K  F  T  V  V  C  S  M  F  H  F  L  K  L  C  N  Y  V  E  F  L  F  T  L  V  L  E  E  H  T  L  N  F  N  N  I  T  F  I  S  V  S  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0115G22.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14923" stop="14138"/>
                    <exon start="14049" stop="13960"/>
                    <exon start="13872" stop="13805"/>
                    <exon start="13714" stop="13621"/>
                    <exon start="13522" stop="13463"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1095</number_coding_nucleotides>
                  <number_encoded_amino_acids>365</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTQGNFDLVGNNVPVFFNRDAKSFPDTIRALKPNPKSHIQENWRILDFFSFLPESLHTFAFFYDDVCLPTDYRHMEGFGVHAYQLINKEGKAHYVKFHWKPTCGVKCMSEEEAIRVGGTNHSHATKDLYDSIAAGNYPEWKLFIQTMDPEDVDKFDFDPLDVTKTWPEDLLPLIPVGRLVLNRNIDNFFAENEQLAFNPGHIVPGIYYSEDKLLQTRIFAYADTQRHRIGPNYMQLPVNAPKCGHHNNHRDGAMNMTHRDEEVDYLPSRFDPCRPAEQYPIPSCVLNGRRTNCVIPKENNFKQAGERYRSWEPDRQDRYINKWVESLSDPRVTHEIRSIWISYLSQADKSCGQKVASRLTVKPTM*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0115G22.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="5" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16781" stop="16713"/>
                    <exon start="15496" stop="15400"/>
                    <exon start="15289" stop="14997"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVYRSKGSLFNSSFISITMDPSKYRPSSAYDTPFLTTNAGGPVYNNVSSLTVGPRGPVLLEDYYLIEKLATFDREKIPERVVHARGASAKGFFEVTHDISHLTCADFLRAPGAQTPVICRFSTVVHERGSPESIRDIRGFAVKFYTREVISC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="16782" e_stop="16713"/>
            <exon e_start="15496" e_stop="15400"/>
            <exon e_start="15289" e_stop="14089"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.973" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="16782" e_stop="16713" e_length="70"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="16712" i_stop="15497" i_length="1216"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15496" e_stop="15400" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.979" acc_prob="0.973">
            <gDNA_intron_boundary i_start="15399" i_stop="15290" i_length="110"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="15289" e_stop="14089" e_length="1201"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16782" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16782" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324167" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16779" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15046"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216981" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16776" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245913" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16776" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15033"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16776" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15060"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16776" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245940" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16776" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15213"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203689" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16775" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15212"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16775" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15216"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265596" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16774" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15014"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16774" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15020"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203535" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16774" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200251" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16774" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206769" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16774" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202024" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16774" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15058"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210422" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16773" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16773" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200335" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16773" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15043"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338190" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16773" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15077"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200812" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16769" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15018"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16769" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334903" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16769" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16768" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206644" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16763" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310798" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16758" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15190"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16743" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337473" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="16743" stop="16713"/>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15204"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333541" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15044"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337949" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15496" stop="15400"/>
              <exon start="15289" stop="15054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334971" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15491" stop="15400"/>
              <exon start="15289" stop="15135"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337945" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15073" stop="14482"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245746" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14919" stop="14089"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E555371" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14912" stop="14155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14912" stop="14215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212683" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14912" stop="14320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14908" stop="14301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298064" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14883" stop="14440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240406" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14879" stop="14251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14878" stop="14253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330326" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14877" stop="14414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14875" stop="14286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265346" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14875" stop="14441"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335707" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14875" stop="14496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335631" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14874" stop="14300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14874" stop="14301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14874" stop="14440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249902" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14868" stop="14366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14866" stop="14450"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14865" stop="14528"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14857" stop="14302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256142" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14854" stop="14448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337900" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14847" stop="14440"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E335932" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14845" stop="14428"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287501" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14843" stop="14251"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14840" stop="14300"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14833" stop="14155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211248" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14833" stop="14439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14821" stop="14231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14820" stop="14345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205439" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14819" stop="14333"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14809" stop="14155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213286" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14809" stop="14215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214548" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14809" stop="14335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14809" stop="14557"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201021" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14803" stop="14311"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250291" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14802" stop="14218"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14802" stop="14439"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206355" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14800" stop="14301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259607" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14798" stop="14258"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14793" stop="14608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267148" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14778" stop="14179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266702" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14778" stop="14294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266704" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14773" stop="14472"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14761" stop="14215"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E725823" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14739" stop="14253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14737" stop="14303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204003" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14737" stop="14375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244888" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14731" stop="14143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14731" stop="14165"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700724" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14727" stop="14301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14726" stop="14411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14719" stop="14148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274980" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14695" stop="14478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201206" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14691" stop="14174"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259712" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14686" stop="14142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14686" stop="14254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E320520" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14671" stop="14320"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338175" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14654" stop="14142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14639" stop="14142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246620" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14635" stop="14224"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282676" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14609" stop="14142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209303" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14587" stop="14142"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336708" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="6" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACTGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCCATCACCATGGATCCCTCTAAG : TATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAATGTTTCTTCCTTGACTGTTGGACCTAGAG : GGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAGATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGATTTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGACATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGTAATTTCGTGTTAATTACTTGAACATGAACTTAGGTCACGGAATCTTTGATTGGGTTTTTTGTTTAAAATGTAATGTTTTGAATTGATTGACTCAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCTAAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTCCTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCACGCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAAGAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAGCTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTGCCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACATATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCAAACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAAGAGGTACTATGCAACTCGACGATTGGTGCTCCTTATGTTTTGCCTTTTGACC</gDNA_template>
            <first_frame> N  C  L  *  I  K  R  L  S  L  Q  F  F  F  H  F  H  H  H  G  S  L  *   : V  S  P  I  K  R  I  R  H  P  F  L  D  N  K  C  W  W  S  C  V  Q  Q  C  F  F  L  D  C  W  T  *  R :   A  C  S  A  *  G  L  L  S  N  *  E  A  R  D  I  *  S  R  E  D  T  *  T  C  C  S  C  *  R  C  *  C  *  G  I  L  *  S  Y  S  *  H  F  S  S  Y  L  C  *  F  S  P  S  S  W  R  S  N  A  C  Y  L  S  I  L  Y  C  C  P  *  T  W  K  P  R  V  Y  Q  G  H  S  W  F  C  C  Q  V  L  H  Q  R  G  N  F  V  L  I  T  *  T  *  T  *  V  T  E  S  L  I  G  F  F  V  *  N  V  M  F  *  I  D  *  L  R  V  T  L  I  L  L  E  T  M  S  P  C  S  L  I  V  M  L  S  R  S  L  T  R  F  V  H  *  N  Q  I  Q  S  H  T  F  R  R  T  G  G  Y  L  I  S  S  R  S  F  L  R  V  C  I  H  S  P  S  S  T  M  M  F  V  S  Q  R  I  T  D  T  W  K  V  L  A  F  T  R  I  N  *  L  T  K  R  G  K  H  I  M  *  S  S  T  G  S  Q  L  V  V  *  N  V  C  L  R  K  K  L  L  E  S  V  V  L  I  I  A  T  R  P  R  I  F  T  I  Q  L  L  L  E  T  I  L  S  G  S  F  L  S  K  Q  W  T  P  R  M  *  T  S  S  I  L  I  L  W  M  *  P  R  H  G  L  R  I  S  C  R  *  S  Q  L  V  D  W  C  *  T  G  T  L  I  T  S  S  Q  R  M  N  N  S  R  L  T  L  D  I  L  S  L  V  F  T  I  P  R  I  S  F  S  R  L  G  Y  S  R  M  L  I  L  R  D  T  V  L  D  Q  T  I  C  S  S  Q  L  M  L  P  S  V  V  I  T  T  I  I  A  M  V  L  *  T  *  H  I  A  M  K  R  Y  Y  A  T  R  R  L  V  L  L  M  F  C  L  L  T </first_frame>
            <second_frame>  T  V  Y  R  S  K  G  S  L  F  N  S  S  F  I  S  I  T  M  D  P  S  K  :  Y  R  P  S  S  A  Y  D  T  P  F  L  T  T  N  A  G  G  P  V  Y  N  N  V  S  S  L  T  V  G  P  R   : G  P  V  L  L  E  D  Y  Y  L  I  E  K  L  A  T  F  D  R  E  K  I  P  E  R  V  V  H  A  R  G  A  S  A  K  G  F  F  E  V  T  H  D  I  S  H  L  T  C  A  D  F  L  R  A  P  G  A  Q  T  P  V  I  C  R  F  S  T  V  V  H  E  R  G  S  P  E  S  I  R  D  I  R  G  F  A  V  K  F  Y  T  R  E  V  I  S  C  *  L  L  E  H  E  L  R  S  R  N  L  *  L  G  F  L  F  K  M  *  C  F  E  L  I  D  S  G  *  L  *  S  C  W  K  Q  C  P  R  V  L  *  S  *  C  *  V  V  P  *  H  D  S  C  I  E  T  K  S  K  V  T  H  S  G  E  L  E  D  T  *  F  L  L  V  P  S  *  E  F  A  Y  I  R  L  L  L  R  *  C  L  S  P  N  G  L  Q  T  H  G  R  F  W  R  S  R  V  S  I  D  *  Q  R  G  E  S  T  L  C  E  V  P  L  E  A  N  L  W  C  E  M  Y  V  *  G  R  S  Y  *  S  R  W  Y  *  S  *  P  R  D  Q  G  S  L  R  F  N  C  C  W  K  L  S  *  V  E  A  F  Y  P  N  N  G  P  R  G  C  R  Q  V  R  F  *  S  S  G  C  N  Q  D  M  A  *  G  S  L  A  V  D  P  S  W  S  I  G  V  E  Q  E  H  *  *  L  L  R  R  E  *  T  T  R  V  *  P  W  T  Y  C  P  W  Y  L  L  F  R  G  *  A  S  P  D  *  D  I  R  V  C  *  Y  S  E  T  P  Y  W  T  K  L  Y  A  A  P  S  *  C  S  Q  V  W  S  S  Q  Q  S  S  R  W  C  Y  E  H  D  T  S  R  *  R  G  T  M  Q  L  D  D  W  C  S  L  C  F  A  F  *   </second_frame>
            <third_frame>   L  F  I  D  Q  K  A  L  S  S  I  L  L  S  F  P  S  P  W  I  P  L  S :   I  A  H  Q  A  H  T  T  P  L  S  *  Q  Q  M  L  V  V  L  C  T  T  M  F  L  P  *  L  L  D  L  E  :  G  L  F  C  L  R  I  T  I  *  L  R  S  S  R  H  L  I  A  R  R  Y  L  N  V  L  F  M  L  E  V  L  V  L  R  D  S  L  K  L  L  M  T  F  L  I  L  L  V  L  I  F  S  E  L  L  A  L  K  R  L  L  F  V  D  S  L  L  L  S  M  N  V  E  A  P  S  L  S  G  T  F  V  V  L  L  S  S  S  T  P  E  R  *  F  R  V  N  Y  L  N  M  N  L  G  H  G  I  F  D  W  V  F  C  L  K  C  N  V  L  N  *  L  T  Q  G  N  F  D  L  V  G  N  N  V  P  V  F  F  N  R  D  A  K  S  F  P  D  T  I  R  A  L  K  P  N  P  K  S  H  I  Q  E  N  W  R  I  L  D  F  F  S  F  L  P  E  S  L  H  T  F  A  F  F  Y  D  D  V  C  L  P  T  D  Y  R  H  M  E  G  F  G  V  H  A  Y  Q  L  I  N  K  E  G  K  A  H  Y  V  K  F  H  W  K  P  T  C  G  V  K  C  M  S  E  E  E  A  I  R  V  G  G  T  N  H  S  H  A  T  K  D  L  Y  D  S  I  A  A  G  N  Y  P  E  W  K  L  F  I  Q  T  M  D  P  E  D  V  D  K  F  D  F  D  P  L  D  V  T  K  T  W  P  E  D  L  L  P  L  I  P  V  G  R  L  V  L  N  R  N  I  D  N  F  F  A  E  N  E  Q  L  A  F  N  P  G  H  I  V  P  G  I  Y  Y  S  E  D  K  L  L  Q  T  R  I  F  A  Y  A  D  T  Q  R  H  R  I  G  P  N  Y  M  Q  L  P  V  N  A  P  K  C  G  H  H  N  N  H  R  D  G  A  M  N  M  T  H  R  D  E  E  V  L  C  N  S  T  I  G  A  P  Y  V  L  P  F  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0115G22.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14923" stop="14090"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>834</number_coding_nucleotides>
                  <number_encoded_amino_acids>278</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTQGNFDLVGNNVPVFFNRDAKSFPDTIRALKPNPKSHIQENWRILDFFSFLPESLHTFAFFYDDVCLPTDYRHMEGFGVHAYQLINKEGKAHYVKFHWKPTCGVKCMSEEEAIRVGGTNHSHATKDLYDSIAAGNYPEWKLFIQTMDPEDVDKFDFDPLDVTKTWPEDLLPLIPVGRLVLNRNIDNFFAENEQLAFNPGHIVPGIYYSEDKLLQTRIFAYADTQRHRIGPNYMQLPVNAPKCGHHNNHRDGAMNMTHRDEEVLCNSTIGAPYVLPFD</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0115G22.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="6" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="16781" stop="16713"/>
                    <exon start="15496" stop="15400"/>
                    <exon start="15289" stop="14997"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVYRSKGSLFNSSFISITMDPSKYRPSSAYDTPFLTTNAGGPVYNNVSSLTVGPRGPVLLEDYYLIEKLATFDREKIPERVVHARGASAKGFFEVTHDISHLTCADFLRAPGAQTPVICRFSTVVHERGSPESIRDIRGFAVKFYTREVISC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="7">
          <exon_coordinates>
            <exon e_start="14063" e_stop="13960"/>
            <exon e_start="13872" e_stop="13805"/>
            <exon e_start="13714" e_stop="13621"/>
            <exon e_start="13522" e_stop="13164"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.441" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.916" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.971" acc_prob="0.579" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14063" e_stop="13960" e_length="104"/>
          </exon>
          <intron i_serial="1" don_prob="0.441" acc_prob="0.998">
            <gDNA_intron_boundary i_start="13959" i_stop="13873" i_length="87"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="13872" e_stop="13805" e_length="68"/>
          </exon>
          <intron i_serial="2" don_prob="0.916" acc_prob="0.990">
            <gDNA_intron_boundary i_start="13804" i_stop="13715" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="13714" e_stop="13621" e_length="94"/>
          </exon>
          <intron i_serial="3" don_prob="0.971" acc_prob="0.579">
            <gDNA_intron_boundary i_start="13620" i_stop="13523" i_length="98"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="13522" e_stop="13164" e_length="359"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14063" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14051" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13237"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14041" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13272"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14039" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14039" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13236"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355246" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14039" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13243"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349172" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14039" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357638" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14031" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249330" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14027" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13173"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255097" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14025" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553977" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14019" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349302" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14019" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354457" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14010" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714738" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14007" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E732171" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14002" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252152" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13970" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201202" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13965" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13171"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290657" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13965" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13390"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13961" stop="13960"/>
              <exon start="13872" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369671" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13863" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E715521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13858" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13857" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E734956" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13852" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13844" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296412" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13824" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216987" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13824" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274505" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13821" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13280"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239214" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13811" stop="13805"/>
              <exon start="13714" stop="13621"/>
              <exon start="13522" stop="13170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356515" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13707" stop="13621"/>
              <exon start="13522" stop="13177"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203495" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13694" stop="13621"/>
              <exon start="13522" stop="13170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217310" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13686" stop="13621"/>
              <exon start="13522" stop="13170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218637" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13672" stop="13621"/>
              <exon start="13522" stop="13278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239127" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13647" stop="13621"/>
              <exon start="13522" stop="13170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13518" stop="13172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E301760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13495" stop="13283"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239107" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13462" stop="13208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283079" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13451" stop="13164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E234849" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="7" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACTAAATGTTGCAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACAAAT : TGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAG : GCAAGACAGATACATCAACAAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAG : GCTGACAAGTCCTGTGGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTGAAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGTCTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTTGAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGTATCTCA</gDNA_template>
            <first_frame> T  K  C  C  R  W  I  I  C  P  R  G  L  I  L  V  V  L  L  S  S  T  R  F  L  L  V  S  *  M  E  G  V  Q  I :   V  S  F  R  K  K  T  T  S  N  R  Q  G  R  G  T  D  H  G  N  L  T   : G  K  T  D  T  S  T  N  G  L  S  L  Y  P  I  H  E  S  L  M  R  F  A  A  Y  G  Y  H  T  C  L  R :   L  T  S  P  V  V  R  R  S  L  L  V  S  L  *  S  L  Q  C  E  K  S  M  K  I  V  E  M  V  S  S  C  K  C  *  R  T  N  A  K  K  R  P  R  C  A  I  N  C  T  S  F  S  I  V  M  L  Y  F  V  S  N  F  D  V  L  C  F  Y  Y  N  D  V  G  T  *  I  S  S  Q  L  Y  V  Q  C  F  T  F  *  S  Y  V  I  M  L  S  S  C  S  L  W  C  L  K  N  T  L  S  I  S  I  I  S  L  S  F  Q  Y  L  </first_frame>
            <second_frame>  L  N  V  A  G  G  L  F  A  L  E  V  *  S  L  S  S  C  *  A  V  P  D  S  F  L  C  L  E  W  K  A  Y  K   : L  C  H  S  E  R  K  Q  L  Q  T  G  R  G  E  V  Q  I  M  G  T  *  Q  :  A  R  Q  I  H  Q  Q  M  G  *  V  F  I  R  S  T  S  H  S  *  D  S  Q  H  M  D  I  I  L  V  S   : G  *  Q  V  L  W  S  E  G  R  F  S  S  H  C  E  A  Y  N  V  K  N  Q  *  K  *  L  K  W  F  Q  A  A  N  V  E  G  L  M  Q  K  N  V  R  V  V  L  *  T  V  L  L  F  Q  S  *  C  C  I  L  Y  R  I  S  M  S  C  V  F  T  I  M  M  L  E  P  E  *  V  H  S  C  M  F  N  V  S  L  S  K  V  M  *  L  C  *  V  L  V  H  F  G  A  *  R  T  H  S  Q  F  Q  *  Y  H  F  H  F  S  I  S </second_frame>
            <third_frame>   *  M  L  Q  V  D  Y  L  P  S  R  F  D  P  C  R  P  A  E  Q  Y  P  I  P  S  C  V  L  N  G  R  R  T  N  :  C  V  I  P  K  E  N  N  F  K  Q  A  G  E  R  Y  R  S  W  E  P  D  R :   Q  D  R  Y  I  N  K  W  V  E  S  L  S  D  P  R  V  T  H  E  I  R  S  I  W  I  S  Y  L  S  Q  :  A  D  K  S  C  G  Q  K  V  A  S  R  L  T  V  K  P  T  M  *  K  I  N  E  N  S  *  N  G  F  K  L  Q  M  L  K  D  *  C  K  K  T  S  A  L  C  Y  K  L  Y  F  F  F  N  R  N  V  V  F  C  I  E  F  R  C  L  V  F  L  L  *  *  C  W  N  L  N  K  F  T  V  V  C  S  M  F  H  F  L  K  L  C  N  Y  V  E  F  L  F  T  L  V  L  E  E  H  T  L  N  F  N  N  I  T  F  I  S  V  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0115G22.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="7" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14058" stop="13960"/>
                    <exon start="13872" stop="13805"/>
                    <exon start="13714" stop="13621"/>
                    <exon start="13522" stop="13463"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>318</number_coding_nucleotides>
                  <number_encoded_amino_acids>106</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MLQVDYLPSRFDPCRPAEQYPIPSCVLNGRRTNCVIPKENNFKQAGERYRSWEPDRQDRYINKWVESLSDPRVTHEIRSIWISYLSQADKSCGQKVASRLTVKPTM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="13176" PGL_stop="13456"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13176" e_stop="13456"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="13176" e_stop="13456" e_length="281"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13176" stop="13456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210005" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13176" stop="13371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E267653" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13178" stop="13345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293818" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATGAAAGTGATATTATTGAAATTGAGAGTGTGTTCTTCAAGCACCAAAGTGAACAAGAACTCAACATAATTACATAACTTTAGAAAGTGAAACATTGAACATACAACTGTGAACTTATTCAGGTTCCAACATCATTATAGTAAAAACACAAGACATCGAAATTCGATACAAAATACAACATTACGATTGAAAAAGAAGTACAGTTTATAGCACAACGCGGACGTTTTTTTGCATTAGTCCTTCAACATTTGCAGCTTGAAACCATTTCAACTATTTTCATT</gDNA_template>
            <first_frame> M  K  V  I  L  L  K  L  R  V  C  S  S  S  T  K  V  N  K  N  S  T  *  L  H  N  F  R  K  *  N  I  E  H  T  T  V  N  L  F  R  F  Q  H  H  Y  S  K  N  T  R  H  R  N  S  I  Q  N  T  T  L  R  L  K  K  K  Y  S  L  *  H  N  A  D  V  F  L  H  *  S  F  N  I  C  S  L  K  P  F  Q  L  F  S   </first_frame>
            <second_frame>  *  K  *  Y  Y  *  N  *  E  C  V  L  Q  A  P  K  *  T  R  T  Q  H  N  Y  I  T  L  E  S  E  T  L  N  I  Q  L  *  T  Y  S  G  S  N  I  I  I  V  K  T  Q  D  I  E  I  R  Y  K  I  Q  H  Y  D  *  K  R  S  T  V  Y  S  T  T  R  T  F  F  C  I  S  P  S  T  F  A  A  *  N  H  F  N  Y  F  H  </second_frame>
            <third_frame>   E  S  D  I  I  E  I  E  S  V  F  F  K  H  Q  S  E  Q  E  L  N  I  I  T  *  L  *  K  V  K  H  *  T  Y  N  C  E  L  I  Q  V  P  T  S  L  *  *  K  H  K  T  S  K  F  D  T  K  Y  N  I  T  I  E  K  E  V  Q  F  I  A  Q  R  G  R  F  F  A  L  V  L  Q  H  L  Q  L  E  T  I  S  T  I  F  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0115G22.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="14326" PGL_stop="14530"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14326" e_stop="14530"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.990"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="14326" e_stop="14530" e_length="205"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14326" stop="14530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213771" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGGGTTAAACGCGAGTTGTTCATTCTCTGCGAAGAAGTTATCAATGTTCCTGTTCAACACCAATCGACCAACTGGGATCAACGGCAAGAGATCCTCAGGCCATGTCTTGGTTACATCCAGAGGATCAAAATCGAACTTGTCTACATCCTCGGGGTCCATTGTTTGGATAAAAAGCTTCCACTCAGGATAGTTTCCAGCAGCAAT</gDNA_template>
            <first_frame> Q  G  *  T  R  V  V  H  S  L  R  R  S  Y  Q  C  S  C  S  T  P  I  D  Q  L  G  S  T  A  R  D  P  Q  A  M  S  W  L  H  P  E  D  Q  N  R  T  C  L  H  P  R  G  P  L  F  G  *  K  A  S  T  Q  D  S  F  Q  Q  Q  </first_frame>
            <second_frame>  R  V  K  R  E  L  F  I  L  C  E  E  V  I  N  V  P  V  Q  H  Q  S  T  N  W  D  Q  R  Q  E  I  L  R  P  C  L  G  Y  I  Q  R  I  K  I  E  L  V  Y  I  L  G  V  H  C  L  D  K  K  L  P  L  R  I  V  S  S  S  N </second_frame>
            <third_frame>   G  L  N  A  S  C  S  F  S  A  K  K  L  S  M  F  L  F  N  T  N  R  P  T  G  I  N  G  K  R  S  S  G  H  V  L  V  T  S  R  G  S  K  S  N  L  S  T  S  S  G  S  I  V  W  I  K  S  F  H  S  G  *  F  P  A  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0115G22.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14327" stop="14530"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVKRELFILCEEVINVPVQHQSTNWDQRQEILRPCLGYIQRIKIELVYILGVHCLDKKLPLRIVSSSN</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="34314" PGL_stop="34915"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34314" e_stop="34915"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="34314" e_stop="34915" e_length="602"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34314" stop="34915"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252859" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGTTCTCTTTAGCACCAACATTTCCATTCTGCAATATCTCAATTATAGCTAAAATAGGTTCTTCTTTCGATATAAGATTTTTGTTTGTTTCATCAATCGATAAGTTCAAAAGAGCCGTCACAGCATGTTCCTGAATTCTAGAATCTGGATACGATAGTAGATGCACGAGTGGTGGGATTCCTCCGCGATTCACTATTAATGTCCTATTCTCAGGATTTTCTTTCGAAAGCATCCTGATCTCTTTCACAGCCTTTCTCTGCACTTCTAAATGACTAGACGATAAATCTTGAATCAACGACAAAACTCGTTCATCACTTTCATCCGAGGGGCTCTCGGGTTTTGGAGATTCTTGCTTTCGAGGAAGCTGAAAATTGTTCTTTTCACACCATTGTTGGATCAAATTCTTCAGAGCAAAGTTTGGGGCTAATGACAAGTGCTCCAAAATTTCCCCCGTTTTCGGACATGTTTGGCAACCGGAATCCAACAAATGTTGAATGTTCTCTCTTTCATATGTCTACAAATAGATGCAAAGTGGAAAGGAAAATCAGTCATACAAAGCAAATCGAACGAGTGAATGATCAAAAACCACCACAAGTATTC</gDNA_template>
            <first_frame> R  V  L  F  S  T  N  I  S  I  L  Q  Y  L  N  Y  S  *  N  R  F  F  F  R  Y  K  I  F  V  C  F  I  N  R  *  V  Q  K  S  R  H  S  M  F  L  N  S  R  I  W  I  R  *  *  M  H  E  W  W  D  S  S  A  I  H  Y  *  C  P  I  L  R  I  F  F  R  K  H  P  D  L  F  H  S  L  S  L  H  F  *  M  T  R  R  *  I  L  N  Q  R  Q  N  S  F  I  T  F  I  R  G  A  L  G  F  W  R  F  L  L  S  R  K  L  K  I  V  L  F  T  P  L  L  D  Q  I  L  Q  S  K  V  W  G  *  *  Q  V  L  Q  N  F  P  R  F  R  T  C  L  A  T  G  I  Q  Q  M  L  N  V  L  S  F  I  C  L  Q  I  D  A  K  W  K  G  K  S  V  I  Q  S  K  S  N  E  *  M  I  K  N  H  H  K  Y   </first_frame>
            <second_frame>  E  F  S  L  A  P  T  F  P  F  C  N  I  S  I  I  A  K  I  G  S  S  F  D  I  R  F  L  F  V  S  S  I  D  K  F  K  R  A  V  T  A  C  S  *  I  L  E  S  G  Y  D  S  R  C  T  S  G  G  I  P  P  R  F  T  I  N  V  L  F  S  G  F  S  F  E  S  I  L  I  S  F  T  A  F  L  C  T  S  K  *  L  D  D  K  S  *  I  N  D  K  T  R  S  S  L  S  S  E  G  L  S  G  F  G  D  S  C  F  R  G  S  *  K  L  F  F  S  H  H  C  W  I  K  F  F  R  A  K  F  G  A  N  D  K  C  S  K  I  S  P  V  F  G  H  V  W  Q  P  E  S  N  K  C  *  M  F  S  L  S  Y  V  Y  K  *  M  Q  S  G  K  E  N  Q  S  Y  K  A  N  R  T  S  E  *  S  K  T  T  T  S  I  </second_frame>
            <third_frame>   S  S  L  *  H  Q  H  F  H  S  A  I  S  Q  L  *  L  K  *  V  L  L  S  I  *  D  F  C  L  F  H  Q  S  I  S  S  K  E  P  S  Q  H  V  P  E  F  *  N  L  D  T  I  V  D  A  R  V  V  G  F  L  R  D  S  L  L  M  S  Y  S  Q  D  F  L  S  K  A  S  *  S  L  S  Q  P  F  S  A  L  L  N  D  *  T  I  N  L  E  S  T  T  K  L  V  H  H  F  H  P  R  G  S  R  V  L  E  I  L  A  F  E  E  A  E  N  C  S  F  H  T  I  V  G  S  N  S  S  E  Q  S  L  G  L  M  T  S  A  P  K  F  P  P  F  S  D  M  F  G  N  R  N  P  T  N  V  E  C  S  L  F  H  M  S  T  N  R  C  K  V  E  R  K  I  S  H  T  K  Q  I  E  R  V  N  D  Q  K  P  P  Q  V  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0115G22.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34592" stop="34915"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>324</number_coding_nucleotides>
                  <number_encoded_amino_acids>108</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TINLESTTKLVHHFHPRGSRVLEILAFEEAENCSFHTIVGSNSSEQSLGLMTSAPKFPPFSDMFGNRNPTNVECSLFHMSTNRCKVERKISHTKQIERVNDQKPPQVF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="45346" PGL_stop="47875"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45346" e_stop="45664"/>
            <exon e_start="45794" e_stop="45844"/>
            <exon e_start="45943" e_stop="46033"/>
            <exon e_start="46211" e_stop="46287"/>
            <exon e_start="47455" e_stop="47543"/>
            <exon e_start="47696" e_stop="47875"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.923" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.871" acc_prob="0.463" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.940" acc_prob="0.891" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45346" e_stop="45664" e_length="319"/>
          </exon>
          <intron i_serial="1" don_prob="0.923" acc_prob="0.999">
            <gDNA_intron_boundary i_start="45665" i_stop="45793" i_length="129"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45794" e_stop="45844" e_length="51"/>
          </exon>
          <intron i_serial="2" don_prob="0.871" acc_prob="0.463">
            <gDNA_intron_boundary i_start="45845" i_stop="45942" i_length="98"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="45943" e_stop="46033" e_length="91"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.985">
            <gDNA_intron_boundary i_start="46034" i_stop="46210" i_length="177"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46211" e_stop="46287" e_length="77"/>
          </exon>
          <intron i_serial="4" don_prob="0.940" acc_prob="0.891">
            <gDNA_intron_boundary i_start="46288" i_stop="47454" i_length="1167"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="47455" e_stop="47543" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.986" acc_prob="0.984">
            <gDNA_intron_boundary i_start="47544" i_stop="47695" i_length="152"/>
          </intron>
          <exon e_serial="6" e_score="0.994">
            <gDNA_exon_boundary e_start="47696" e_stop="47875" e_length="180"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45346" stop="45664"/>
              <exon start="45794" stop="45844"/>
              <exon start="45943" stop="46033"/>
              <exon start="46211" stop="46287"/>
              <exon start="47455" stop="47502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45359" stop="45664"/>
              <exon start="45794" stop="45844"/>
              <exon start="45943" stop="46033"/>
              <exon start="46211" stop="46287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332664" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45362" stop="45664"/>
              <exon start="45794" stop="45844"/>
              <exon start="45943" stop="46033"/>
              <exon start="46211" stop="46287"/>
              <exon start="47455" stop="47543"/>
              <exon start="47696" stop="47875"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701658" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCGTTATGGGGCCTAAAACCCCAAAATCTTCTCTAACAAATCTGTATTTCCAATAATACCCCTAAACCCTGTCCTCCGCGACACCACCGGAGGAGTCGTCAAAAATCAGCAAACACGCTTCCGACCACCAATCATCGCCGCCGTATGGCTATTCCACGGCGGCGCCACCAGCATCATCACAGCCGTGTGCGGTTTCTGTTCCCGGCAATTTTTGCTGTTTCCGCCATTATCCTCTTCTTATTCCTCTTCCTATCAATCCTCGCTCCGTCTCCTAATGATGATAATCACCTCCGCCATCTCCGTCGTGATGATTCATCG : GAAGGGAAAAGCCGTAGTAATGAGAATAGAGTGAGTTTATCTCGTGTTAAG : ATCAATGCAGAAGTTCATAATCGTGATCTCTGGAGTTCGAAAAATTCAAAGTTTTTCTATGGATGCAGTAATGCCAGCAGTAAATTTGCAA : AAGCCAAAACGATCACACATCCGAATCGATACTTGTTAATTGTCACAAGTGGAGGTCTTAACCAACAAAGAACTGGG : ATAACTGATGCTGTTGTTGCTGCTCGCATTTTAAATGCCACTCTTGTTGTTCCAAAGTTGGACAAGACGTCTTTCTGGAAAGATTCTAG : TGACTTCTCTGATATATTTGATGTTGATTGGTTTATAAAACATCTAACAACAGATGTTACAATTATAAAAGATCTTCCGCTTAGAAGAGGGCAGATATGGACACCACATAGAATGCGTGTTCCTAGAAAGTGCAGTGACAGATGTTATATAAATCGTGTATTGCCTGTACTCATGAAAAG</gDNA_template>
            <first_frame> V  V  M  G  P  K  T  P  K  S  S  L  T  N  L  Y  F  Q  *  Y  P  *  T  L  S  S  A  T  P  P  E  E  S  S  K  I  S  K  H  A  S  D  H  Q  S  S  P  P  Y  G  Y  S  T  A  A  P  P  A  S  S  Q  P  C  A  V  S  V  P  G  N  F  C  C  F  R  H  Y  P  L  L  I  P  L  P  I  N  P  R  S  V  S  *  *  *  *  S  P  P  P  S  P  S  *  *  F  I   : G  R  E  K  P  *  *  *  E  *  S  E  F  I  S  C  *   : D  Q  C  R  S  S  *  S  *  S  L  E  F  E  K  F  K  V  F  L  W  M  Q  *  C  Q  Q  *  I  C  K :   S  Q  N  D  H  T  S  E  S  I  L  V  N  C  H  K  W  R  S  *  P  T  K  N  W   : D  N  *  C  C  C  C  C  S  H  F  K  C  H  S  C  C  S  K  V  G  Q  D  V  F  L  E  R  F  *  :  *  L  L  *  Y  I  *  C  *  L  V  Y  K  T  S  N  N  R  C  Y  N  Y  K  R  S  S  A  *  K  R  A  D  M  D  T  T  *  N  A  C  S  *  K  V  Q  *  Q  M  L  Y  K  S  C  I  A  C  T  H  E  K </first_frame>
            <second_frame>  S  L  W  G  L  K  P  Q  N  L  L  *  Q  I  C  I  S  N  N  T  P  K  P  C  P  P  R  H  H  R  R  S  R  Q  K  S  A  N  T  L  P  T  T  N  H  R  R  R  M  A  I  P  R  R  R  H  Q  H  H  H  S  R  V  R  F  L  F  P  A  I  F  A  V  S  A  I  I  L  F  L  F  L  F  L  S  I  L  A  P  S  P  N  D  D  N  H  L  R  H  L  R  R  D  D  S  S  :  E  G  K  S  R  S  N  E  N  R  V  S  L  S  R  V  K  :  I  N  A  E  V  H  N  R  D  L  W  S  S  K  N  S  K  F  F  Y  G  C  S  N  A  S  S  K  F  A   : K  A  K  T  I  T  H  P  N  R  Y  L  L  I  V  T  S  G  G  L  N  Q  Q  R  T  G  :  I  T  D  A  V  V  A  A  R  I  L  N  A  T  L  V  V  P  K  L  D  K  T  S  F  W  K  D  S  S :   D  F  S  D  I  F  D  V  D  W  F  I  K  H  L  T  T  D  V  T  I  I  K  D  L  P  L  R  R  G  Q  I  W  T  P  H  R  M  R  V  P  R  K  C  S  D  R  C  Y  I  N  R  V  L  P  V  L  M  K   </second_frame>
            <third_frame>   R  Y  G  A  *  N  P  K  I  F  S  N  K  S  V  F  P  I  I  P  L  N  P  V  L  R  D  T  T  G  G  V  V  K  N  Q  Q  T  R  F  R  P  P  I  I  A  A  V  W  L  F  H  G  G  A  T  S  I  I  T  A  V  C  G  F  C  S  R  Q  F  L  L  F  P  P  L  S  S  S  Y  S  S  S  Y  Q  S  S  L  R  L  L  M  M  I  I  T  S  A  I  S  V  V  M  I  H  R :   K  G  K  A  V  V  M  R  I  E  *  V  Y  L  V  L  R :   S  M  Q  K  F  I  I  V  I  S  G  V  R  K  I  Q  S  F  S  M  D  A  V  M  P  A  V  N  L  Q  :  K  P  K  R  S  H  I  R  I  D  T  C  *  L  S  Q  V  E  V  L  T  N  K  E  L  G :   *  L  M  L  L  L  L  L  A  F  *  M  P  L  L  L  F  Q  S  W  T  R  R  L  S  G  K  I  L   : V  T  S  L  I  Y  L  M  L  I  G  L  *  N  I  *  Q  Q  M  L  Q  L  *  K  I  F  R  L  E  E  G  R  Y  G  H  H  I  E  C  V  F  L  E  S  A  V  T  D  V  I  *  I  V  Y  C  L  Y  S  *  K  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0115G22.1" strand="+"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45383" stop="45664"/>
                    <exon start="45794" stop="45844"/>
                    <exon start="45943" stop="46033"/>
                    <exon start="46211" stop="46287"/>
                    <exon start="47455" stop="47543"/>
                    <exon start="47696" stop="47873"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>768</number_coding_nucleotides>
                  <number_encoded_amino_acids>256</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QICISNNTPKPCPPRHHRRSRQKSANTLPTTNHRRRMAIPRRRHQHHHSRVRFLFPAIFAVSAIILFLFLFLSILAPSPNDDNHLRHLRRDDSSEGKSRSNENRVSLSRVKINAEVHNRDLWSSKNSKFFYGCSNASSKFAKAKTITHPNRYLLIVTSGGLNQQRTGITDAVVAARILNATLVVPKLDKTSFWKDSSDFSDIFDVDWFIKHLTTDVTIIKDLPLRRGQIWTPHRMRVPRKCSDRCYINRVLPVLMK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="55216" PGL_stop="56253"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55216" e_stop="55226"/>
            <exon e_start="55366" e_stop="55447"/>
            <exon e_start="55575" e_stop="55652"/>
            <exon e_start="55733" e_stop="55858"/>
            <exon e_start="56212" e_stop="56253"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.963" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.929" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.790" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.992" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55216" e_stop="55226" e_length="11"/>
          </exon>
          <intron i_serial="1" don_prob="0.963" acc_prob="0.999">
            <gDNA_intron_boundary i_start="55227" i_stop="55365" i_length="139"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="55366" e_stop="55447" e_length="82"/>
          </exon>
          <intron i_serial="2" don_prob="0.929" acc_prob="0.979">
            <gDNA_intron_boundary i_start="55448" i_stop="55574" i_length="127"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="55575" e_stop="55652" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="0.790" acc_prob="1.000">
            <gDNA_intron_boundary i_start="55653" i_stop="55732" i_length="80"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="55733" e_stop="55858" e_length="126"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.992">
            <gDNA_intron_boundary i_start="55859" i_stop="56211" i_length="353"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="56212" e_stop="56253" e_length="42"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55216" stop="55226"/>
              <exon start="55366" stop="55447"/>
              <exon start="55575" stop="55652"/>
              <exon start="55733" stop="55858"/>
              <exon start="56212" stop="56253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206698" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAAAGAATTAG : GCGTCGAAAAATCCGGGAGAAATGCTGAAGGAGATTCATGGTTGGAAACATGGCAGGAAGTTCTTCATCAAGACGAATGGAG : CAATTTAGCTAGGATAGAGAGGAGTGCGCAAAAACAAGCAAAATCGGGTACAGAGAATGCTGGGTGGTATGAGAATTG : GTCAGAAAAGTATGATGCAAAGGGTTGGACAGAGAAAGGAGCCCACAAGTATGGTAGACTGAATGAACAGTCGTGGTGGGAAAAATGGGGAGAGGAATATGATGGAAGAGGATCTGTCCTTAAATG : GACTGATAAGTGGGCAGAAAGTGAATTGGGAACAAAATGGGG</gDNA_template>
            <first_frame> Q  R  I  R :   R  R  K  I  R  E  K  C  *  R  R  F  M  V  G  N  M  A  G  S  S  S  S  R  R  M  E  :  Q  F  S  *  D  R  E  E  C  A  K  T  S  K  I  G  Y  R  E  C  W  V  V  *  E  L  :  V  R  K  V  *  C  K  G  L  D  R  E  R  S  P  Q  V  W  *  T  E  *  T  V  V  V  G  K  M  G  R  G  I  *  W  K  R  I  C  P  *  M  :  D  *  *  V  G  R  K  *  I  G  N  K  M  G </first_frame>
            <second_frame>  K  E  L   : G  V  E  K  S  G  R  N  A  E  G  D  S  W  L  E  T  W  Q  E  V  L  H  Q  D  E  W  S :   N  L  A  R  I  E  R  S  A  Q  K  Q  A  K  S  G  T  E  N  A  G  W  Y  E  N  W :   S  E  K  Y  D  A  K  G  W  T  E  K  G  A  H  K  Y  G  R  L  N  E  Q  S  W  W  E  K  W  G  E  E  Y  D  G  R  G  S  V  L  K  W :   T  D  K  W  A  E  S  E  L  G  T  K  W   </second_frame>
            <third_frame>   K  N  *  :  A  S  K  N  P  G  E  M  L  K  E  I  H  G  W  K  H  G  R  K  F  F  I  K  T  N  G   : A  I  *  L  G  *  R  G  V  R  K  N  K  Q  N  R  V  Q  R  M  L  G  G  M  R  I   : G  Q  K  S  M  M  Q  R  V  G  Q  R  K  E  P  T  S  M  V  D  *  M  N  S  R  G  G  K  N  G  E  R  N  M  M  E  E  D  L  S  L  N   : G  L  I  S  G  Q  K  V  N  W  E  Q  N  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0115G22.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55217" stop="55226"/>
                    <exon start="55366" stop="55447"/>
                    <exon start="55575" stop="55652"/>
                    <exon start="55733" stop="55858"/>
                    <exon start="56212" stop="56251"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KELGVEKSGRNAEGDSWLETWQEVLHQDEWSNLARIERSAQKQAKSGTENAGWYENWSEKYDAKGWTEKGAHKYGRLNEQSWWEKWGEEYDGRGSVLKWTDKWAESELGTKW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="57038" PGL_stop="57455"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="57038" e_stop="57455"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.981">
            <gDNA_exon_boundary e_start="57038" e_stop="57455" e_length="418"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57038" stop="57455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228957" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="57128" stop="57455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228861" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATCCAAACATTGATTTTGGGTCATCTGTGCCTCCAGACGATGAGTCCCCTCCAACTAGATGATTTCTTCTCACCGATACTGGAGAGAGATAGTAAGTATGTTGGTATAGTCGTGATGTATGTGCAATTTGGCATGAACACCATCGTAAGTCTCCTCCAACATCTTCACAGTGACAACGCGTCATCTCATTCATCACGATTGATTCTCAAGATAGATAGCTAGCTTACATTTTTTTTTCAAAATTTAGTTGTAACCTTTTGCTAGTTGCTACAGTCAGTTTATTTCATTCTTTCAGCGTTGTGGTATTTGCATTTGTTTTGTATGTTTGACATGTTCTAGAGGTCCTTTTGGATCTCTCAAGTCAAAATTTTGACATTTTTTAGTTCAATGCTCAAGAATCTTGCATTATCGATTTCA</gDNA_template>
            <first_frame> Y  P  N  I  D  F  G  S  S  V  P  P  D  D  E  S  P  P  T  R  *  F  L  L  T  D  T  G  E  R  *  *  V  C  W  Y  S  R  D  V  C  A  I  W  H  E  H  H  R  K  S  P  P  T  S  S  Q  *  Q  R  V  I  S  F  I  T  I  D  S  Q  D  R  *  L  A  Y  I  F  F  S  K  F  S  C  N  L  L  L  V  A  T  V  S  L  F  H  S  F  S  V  V  V  F  A  F  V  L  Y  V  *  H  V  L  E  V  L  L  D  L  S  S  Q  N  F  D  I  F  *  F  N  A  Q  E  S  C  I  I  D  F  </first_frame>
            <second_frame>  I  Q  T  L  I  L  G  H  L  C  L  Q  T  M  S  P  L  Q  L  D  D  F  F  S  P  I  L  E  R  D  S  K  Y  V  G  I  V  V  M  Y  V  Q  F  G  M  N  T  I  V  S  L  L  Q  H  L  H  S  D  N  A  S  S  H  S  S  R  L  I  L  K  I  D  S  *  L  T  F  F  F  Q  N  L  V  V  T  F  C  *  L  L  Q  S  V  Y  F  I  L  S  A  L  W  Y  L  H  L  F  C  M  F  D  M  F  *  R  S  F  W  I  S  Q  V  K  I  L  T  F  F  S  S  M  L  K  N  L  A  L  S  I  S </second_frame>
            <third_frame>   S  K  H  *  F  W  V  I  C  A  S  R  R  *  V  P  S  N  *  M  I  S  S  H  R  Y  W  R  E  I  V  S  M  L  V  *  S  *  C  M  C  N  L  A  *  T  P  S  *  V  S  S  N  I  F  T  V  T  T  R  H  L  I  H  H  D  *  F  S  R  *  I  A  S  L  H  F  F  F  K  I  *  L  *  P  F  A  S  C  Y  S  Q  F  I  S  F  F  Q  R  C  G  I  C  I  C  F  V  C  L  T  C  S  R  G  P  F  G  S  L  K  S  K  F  *  H  F  L  V  Q  C  S  R  I  L  H  Y  R  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0115G22.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="57039" stop="57260"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IQTLILGHLCLQTMSPLQLDDFFSPILERDSKYVGIVVMYVQFGMNTIVSLLQHLHSDNASSHSSRLILKIDS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="70505" PGL_stop="71466"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70505" e_stop="71466"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="70505" e_stop="71466" e_length="962"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70505" stop="71466"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707829" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATCAAAAGCAGAACAACTTCACATACGACTGGATAGTCCGAACTCGAGTTGATGGCTACTGGTCTTCACCACTAGGCCCCGAAAACTTCATCCCCGGGCGTTACCTCGTCCCTCCAGGTTCCTCCTACGGAGGCCTGAACGATCGTTTTGGCGTTGGTGACTACAACACATCGGTGATTGCTCTTTCGAGGCTCTCCATGATACCCCAGCTTGATTTAGCAGGGCGTATTCAGCTCAACTCAGAAAGTGCATTCAAAGCCCAACTTACAACTCAACAAGTCCCTTACCTAACTATGCGCCTTCCCTTTTGTGTAGTAACGGATCGTCAGTACGAATTTCCACCATCCCATTATGGCGTACCGGTTGCAGCACTTTCTAGTCGAGGCCCCCTGAGTGGGGCCAAATGCCGGCCGTGCACGCCCGTGTGCACCGGGTCATGCGTTGAGGTTGCCATGAATAGACTAGATAAAGGATGGAGTTGGACGGATTGGGCCAATAACTCTCTCGAGCTATGCGATGCTCACGCTGAATGGGAGAGCGGGTGGGAGAGAGTTTTCGACAGAGTGGCGGGGAAAAAGCTTGCTGCAGCTAGAAGAAGGATTGATGGAATGAAATTAGATCAATGTATTAGGGAATTTGCTGAGATGAAGAATAAAACTTCACGTTGGGAGGCTCCATCAGGTACAGAAATTTGTAGTTTAGGTTTGTTGGACACTCCCCAAAGCTAAAAAGAAGGAACCCGTCCTTTCGAGCTTCTAGTTCTTCTGGATTGCAACCCACGAGGGCACTCTAGAGCAACCTTTGAACGCGTTCCGCCTTATTATTTAGTGTATCGAGTTACATATTGTTTATTTCTTGAAAAAAAAAAAGTCCATTTACACATAGTAGGATTCTTAATAGTTCTTAGTATAACTGATTCAAGTGTTAGGCTCTACTGAATAATGAAATATAGCATCACTTTG</gDNA_template>
            <first_frame> I  K  S  R  T  T  S  H  T  T  G  *  S  E  L  E  L  M  A  T  G  L  H  H  *  A  P  K  T  S  S  P  G  V  T  S  S  L  Q  V  P  P  T  E  A  *  T  I  V  L  A  L  V  T  T  T  H  R  *  L  L  F  R  G  S  P  *  Y  P  S  L  I  *  Q  G  V  F  S  S  T  Q  K  V  H  S  K  P  N  L  Q  L  N  K  S  L  T  *  L  C  A  F  P  F  V  *  *  R  I  V  S  T  N  F  H  H  P  I  M  A  Y  R  L  Q  H  F  L  V  E  A  P  *  V  G  P  N  A  G  R  A  R  P  C  A  P  G  H  A  L  R  L  P  *  I  D  *  I  K  D  G  V  G  R  I  G  P  I  T  L  S  S  Y  A  M  L  T  L  N  G  R  A  G  G  R  E  F  S  T  E  W  R  G  K  S  L  L  Q  L  E  E  G  L  M  E  *  N  *  I  N  V  L  G  N  L  L  R  *  R  I  K  L  H  V  G  R  L  H  Q  V  Q  K  F  V  V  *  V  C  W  T  L  P  K  A  K  K  K  E  P  V  L  S  S  F  *  F  F  W  I  A  T  H  E  G  T  L  E  Q  P  L  N  A  F  R  L  I  I  *  C  I  E  L  H  I  V  Y  F  L  K  K  K  K  S  I  Y  T  *  *  D  S  *  *  F  L  V  *  L  I  Q  V  L  G  S  T  E  *  *  N  I  A  S  L   </first_frame>
            <second_frame>  S  K  A  E  Q  L  H  I  R  L  D  S  P  N  S  S  *  W  L  L  V  F  T  T  R  P  R  K  L  H  P  R  A  L  P  R  P  S  R  F  L  L  R  R  P  E  R  S  F  W  R  W  *  L  Q  H  I  G  D  C  S  F  E  A  L  H  D  T  P  A  *  F  S  R  A  Y  S  A  Q  L  R  K  C  I  Q  S  P  T  Y  N  S  T  S  P  L  P  N  Y  A  P  S  L  L  C  S  N  G  S  S  V  R  I  S  T  I  P  L  W  R  T  G  C  S  T  F  *  S  R  P  P  E  W  G  Q  M  P  A  V  H  A  R  V  H  R  V  M  R  *  G  C  H  E  *  T  R  *  R  M  E  L  D  G  L  G  Q  *  L  S  R  A  M  R  C  S  R  *  M  G  E  R  V  G  E  S  F  R  Q  S  G  G  E  K  A  C  C  S  *  K  K  D  *  W  N  E  I  R  S  M  Y  *  G  I  C  *  D  E  E  *  N  F  T  L  G  G  S  I  R  Y  R  N  L  *  F  R  F  V  G  H  S  P  K  L  K  R  R  N  P  S  F  R  A  S  S  S  S  G  L  Q  P  T  R  A  L  *  S  N  L  *  T  R  S  A  L  L  F  S  V  S  S  Y  I  L  F  I  S  *  K  K  K  S  P  F  T  H  S  R  I  L  N  S  S  *  Y  N  *  F  K  C  *  A  L  L  N  N  E  I  *  H  H  F  </second_frame>
            <third_frame>   Q  K  Q  N  N  F  T  Y  D  W  I  V  R  T  R  V  D  G  Y  W  S  S  P  L  G  P  E  N  F  I  P  G  R  Y  L  V  P  P  G  S  S  Y  G  G  L  N  D  R  F  G  V  G  D  Y  N  T  S  V  I  A  L  S  R  L  S  M  I  P  Q  L  D  L  A  G  R  I  Q  L  N  S  E  S  A  F  K  A  Q  L  T  T  Q  Q  V  P  Y  L  T  M  R  L  P  F  C  V  V  T  D  R  Q  Y  E  F  P  P  S  H  Y  G  V  P  V  A  A  L  S  S  R  G  P  L  S  G  A  K  C  R  P  C  T  P  V  C  T  G  S  C  V  E  V  A  M  N  R  L  D  K  G  W  S  W  T  D  W  A  N  N  S  L  E  L  C  D  A  H  A  E  W  E  S  G  W  E  R  V  F  D  R  V  A  G  K  K  L  A  A  A  R  R  R  I  D  G  M  K  L  D  Q  C  I  R  E  F  A  E  M  K  N  K  T  S  R  W  E  A  P  S  G  T  E  I  C  S  L  G  L  L  D  T  P  Q  S  *  K  E  G  T  R  P  F  E  L  L  V  L  L  D  C  N  P  R  G  H  S  R  A  T  F  E  R  V  P  P  Y  Y  L  V  Y  R  V  T  Y  C  L  F  L  E  K  K  K  V  H  L  H  I  V  G  F  L  I  V  L  S  I  T  D  S  S  V  R  L  Y  *  I  M  K  Y  S  I  T  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0115G22.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70507" stop="71232"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>723</number_coding_nucleotides>
                  <number_encoded_amino_acids>241</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QKQNNFTYDWIVRTRVDGYWSSPLGPENFIPGRYLVPPGSSYGGLNDRFGVGDYNTSVIALSRLSMIPQLDLAGRIQLNSESAFKAQLTTQQVPYLTMRLPFCVVTDRQYEFPPSHYGVPVAALSSRGPLSGAKCRPCTPVCTGSCVEVAMNRLDKGWSWTDWANNSLELCDAHAEWESGWERVFDRVAGKKLAAARRRIDGMKLDQCIREFAEMKNKTSRWEAPSGTEICSLGLLDTPQS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0115G22.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71233" stop="71442"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KEGTRPFELLVLLDCNPRGHSRATFERVPPYYLVYRVTYCLFLEKKKVHLHIVGFLIVLSITDSSVRLY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="72019" PGL_stop="71520"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="72019" e_stop="71520"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="72019" e_stop="71520" e_length="500"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72019" stop="71520"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277426" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TACTGTCGATCAATCCCGGAGTCTCTGTTCAATTTTCTCGGGAATCGTGAGTATGATTTCGTCGGAATTGGAATTGAAAGCGATGTGGAGAAATTGTTGGAGGATTATGAGCTGAATGTTAAGAATATGGTGGATTTGAGAGGAATTGCTGCTGATGTATATGGTATGAAGAATTTGAAGAATGCTGGGTTGAAGGAACTATGCAATGTCGTTCTGGAAAAGGAGATTGTTAAGCCAAAATCTGTTACTATGGGTAGATGGGATAGTGAATGGTTGAGTTTGAATCAAATCCAATATGCTTGTCTTGATGTGTTTCTTCTGAAATTGCTAAGCACTTGAATGTAGGTGCTGCTTCTACTCGAAGATATTAGAATCCGACTATTTCAAATTTACGTAGAAACAGTATAGATATAGAATTTGATGGATGAAGTTTTATTTGAGAATTTGTTGCGTATTTACTTTGTCACGTTTCGTTTCTTATATTTGAATTTATGAATGTT</gDNA_template>
            <first_frame> Y  C  R  S  I  P  E  S  L  F  N  F  L  G  N  R  E  Y  D  F  V  G  I  G  I  E  S  D  V  E  K  L  L  E  D  Y  E  L  N  V  K  N  M  V  D  L  R  G  I  A  A  D  V  Y  G  M  K  N  L  K  N  A  G  L  K  E  L  C  N  V  V  L  E  K  E  I  V  K  P  K  S  V  T  M  G  R  W  D  S  E  W  L  S  L  N  Q  I  Q  Y  A  C  L  D  V  F  L  L  K  L  L  S  T  *  M  *  V  L  L  L  L  E  D  I  R  I  R  L  F  Q  I  Y  V  E  T  V  *  I  *  N  L  M  D  E  V  L  F  E  N  L  L  R  I  Y  F  V  T  F  R  F  L  Y  L  N  L  *  M   </first_frame>
            <second_frame>  T  V  D  Q  S  R  S  L  C  S  I  F  S  G  I  V  S  M  I  S  S  E  L  E  L  K  A  M  W  R  N  C  W  R  I  M  S  *  M  L  R  I  W  W  I  *  E  E  L  L  L  M  Y  M  V  *  R  I  *  R  M  L  G  *  R  N  Y  A  M  S  F  W  K  R  R  L  L  S  Q  N  L  L  L  W  V  D  G  I  V  N  G  *  V  *  I  K  S  N  M  L  V  L  M  C  F  F  *  N  C  *  A  L  E  C  R  C  C  F  Y  S  K  I  L  E  S  D  Y  F  K  F  T  *  K  Q  Y  R  Y  R  I  *  W  M  K  F  Y  L  R  I  C  C  V  F  T  L  S  R  F  V  S  Y  I  *  I  Y  E  C  </second_frame>
            <third_frame>   L  S  I  N  P  G  V  S  V  Q  F  S  R  E  S  *  V  *  F  R  R  N  W  N  *  K  R  C  G  E  I  V  G  G  L  *  A  E  C  *  E  Y  G  G  F  E  R  N  C  C  *  C  I  W  Y  E  E  F  E  E  C  W  V  E  G  T  M  Q  C  R  S  G  K  G  D  C  *  A  K  I  C  Y  Y  G  *  M  G  *  *  M  V  E  F  E  S  N  P  I  C  L  S  *  C  V  S  S  E  I  A  K  H  L  N  V  G  A  A  S  T  R  R  Y  *  N  P  T  I  S  N  L  R  R  N  S  I  D  I  E  F  D  G  *  S  F  I  *  E  F  V  A  Y  L  L  C  H  V  S  F  L  I  F  E  F  M  N  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0115G22.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="72019" stop="71681"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YCRSIPESLFNFLGNREYDFVGIGIESDVEKLLEDYELNVKNMVDLRGIAADVYGMKNLKNAGLKELCNVVLEKEIVKPKSVTMGRWDSEWLSLNQIQYACLDVFLLKLLST*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="78152" PGL_stop="82069"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78152" e_stop="79414"/>
            <exon e_start="80753" e_stop="80898"/>
            <exon e_start="81328" e_stop="81395"/>
            <exon e_start="81488" e_stop="81590"/>
            <exon e_start="81719" e_stop="82069"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.955" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78152" e_stop="79414" e_length="1263"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79415" i_stop="80752" i_length="1338"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80753" e_stop="80898" e_length="146"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.997">
            <gDNA_intron_boundary i_start="80899" i_stop="81327" i_length="429"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="81328" e_stop="81395" e_length="68"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.955">
            <gDNA_intron_boundary i_start="81396" i_stop="81487" i_length="92"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="81488" e_stop="81590" e_length="103"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.997">
            <gDNA_intron_boundary i_start="81591" i_stop="81718" i_length="128"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="81719" e_stop="82069" e_length="351"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78152" stop="78478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78162" stop="78366"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E210968" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78191" stop="78813"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268922" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78191" stop="78800"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268228" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78209" stop="78851"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207424" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78245" stop="78637"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201304" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78513" stop="79118"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374574" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78513" stop="79057"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208512" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78513" stop="79042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78513" stop="78896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208567" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78540" stop="78985"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251410" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78634" stop="79130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310173" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78767" stop="79240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E310997" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79017" stop="79414"/>
              <exon start="80753" stop="80898"/>
              <exon start="81328" stop="81395"/>
              <exon start="81488" stop="81590"/>
              <exon start="81719" stop="81820"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E713814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79033" stop="79414"/>
              <exon start="80753" stop="80898"/>
              <exon start="81328" stop="81395"/>
              <exon start="81488" stop="81545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728684" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="79033" stop="79414"/>
              <exon start="80753" stop="80898"/>
              <exon start="81328" stop="81365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728723" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80753" stop="80898"/>
              <exon start="81328" stop="81395"/>
              <exon start="81488" stop="81590"/>
              <exon start="81719" stop="81953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80753" stop="80898"/>
              <exon start="81328" stop="81395"/>
              <exon start="81488" stop="81590"/>
              <exon start="81719" stop="81950"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231113" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80753" stop="80898"/>
              <exon start="81328" stop="81395"/>
              <exon start="81488" stop="81590"/>
              <exon start="81719" stop="81939"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80753" stop="80898"/>
              <exon start="81328" stop="81395"/>
              <exon start="81488" stop="81545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233351" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80758" stop="80898"/>
              <exon start="81328" stop="81395"/>
              <exon start="81488" stop="81590"/>
              <exon start="81719" stop="82069"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214216" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80782" stop="80898"/>
              <exon start="81328" stop="81395"/>
              <exon start="81488" stop="81590"/>
              <exon start="81719" stop="81989"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374573" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAACAATACTCTTAACTATAGACGGAGAATCCCGATGATGGCACAGTATAACAATAATTCTACCGTCGATCCAAAATCCGGCTATTCACCGGCGAATTCAACTTTCTACAGCAAACGTAGACCAATTCCGTTTCCGGCGAATGAATCTATTGATGTAACAACTTTCATTTCTTCACGAGCACATAGCGGGAAAATCGCTTTCATCGATGCTACGACTGGTCGGAAACTCAGTTTCTCCGACGTATGGAACGCCGTTGAGTCGTTAGCTACTAGTTTATCAGTTGATATGAGTATTCGTAAAGGTGATGTTGTTCTTCTCCTTTCTCCTAATTCCATTTTCTTCCCTATTATTTGTCTCGCCGTTATGTCACTAGGAGCTATAATCACTACAACGAATCCACTCAACACGAACAGCGAAATCGCTAAACAGATCAAGGATTCGAATCCTGTTCTCGCTTTTACAATCCCTCAACTACTCCCGAAACTCACCGGATTTAATCTCCCGGTGATTTTAATCGACGGAGTGAATGATTCAAATTCGAATCTCAAAATCGTTGGGGATTTACAGAAATTGATTCAGAGAAAACCTAGTGAAAGCAGATTGAAAGAGAGAGTTACACAAAACGACGTAGCTACTCTGCTTTACTCATCTGGTACTACCGGAGCAAGCAAAGGAGTTATTTCATCTCACAAAAACCTAATCGCCATGGTTCAAACTATAGTCAGTCGATTCAATCTAGATGAAGGTGTACAAACCTTCATTTGTACTGTACCTATGTTTCATATTTACGGATTAGCAGCGTTTGCAGCTGGGTTATTAGCATCTGGATCTACTGTTGTTGTATTATCAAAATTCGAAATGGATGAAATGCTCTCATCGATTCACAAATACAAAGCAACTTCTCTACCATTAGTGCCTCCAATTCTCGTTGCGCTTGTGAATAACGCTGATTGGATTAAGAAAAAATATGATTTAAGCAGCTTGGAGAGTGTTCTCTCCGGCGGTGCTCCGTTGAGTAAGGAAGTGATTGAGGGATTTGTAGAGAAGTATCCATCTGTGAGGATTTTGCAAGGGTATGGGTTGACAGAGTCGACCGGAATCGGGGCGTCGACGGATTCTTTGGAGGAGAGCCGGAGATATGGAACGGCGGGAATGTTGTCACCGAGCATGGAAGGGAAAATTGTTGATCCGGAGAGTGGAAAAGCTTTGCCGGTGAATAAGACCGGTGAGCTTTGGCTAAGAGGACCTACCATTATGAAAG : GTTATTTCAGTAATGAAGAAGCTACTGCTTCCACTCTAGACTCTGATGGATGGTTAAGAACTGGAGATCTATGCTATATAGATGAAGATGGTTTCATTTTTGTGGTTGATAGATTAAAGGAGCTCATCAAATATAAAGGTTATCAG : GTTCCTCCAGCAGAGTTAGAGGCTTTATTGCTCACTCATCCAGAAATTTCTGATGCTGCTGTTATACC : GTTTCCGGATAAGGAGGTCGGACAGTTTCCTATGGCATATGTAGTACGTAAAACTGGGAGTACTATATCAGAGAGTGCAGTCATGGATTTCATTGCGAAACAG : GTTGCTCCATATAAAAGAATTCGGAGAGTTGCATTTGTGGCTTCCATACCGAAGAATCCTTCTGGGAAAATACTCAGGAAGGATTTGATAAAGCTAGCAACATCAAAACTCTGAGAACAAGATTTATGATTTTTGCATTTTAGCAAGTGTAACTTCCTCAGCAGCCATAGTCTTGTTATTGTGCTAAATAATGAGTGTGTGCTCTTGTTGATTATTAATTTGGTATGATTGTGGAGGAGTACGAAGGGAATGATTCGCTAAGACTCAACTCATTTTGACCTGTCTAAATTTAACTCGACCCGCCATTTGACAGCCCCCTAATGTTATCATGAGGTCACAGGTTTGAGTTAT</gDNA_template>
            <first_frame> K  T  I  L  L  T  I  D  G  E  S  R  *  W  H  S  I  T  I  I  L  P  S  I  Q  N  P  A  I  H  R  R  I  Q  L  S  T  A  N  V  D  Q  F  R  F  R  R  M  N  L  L  M  *  Q  L  S  F  L  H  E  H  I  A  G  K  S  L  S  S  M  L  R  L  V  G  N  S  V  S  P  T  Y  G  T  P  L  S  R  *  L  L  V  Y  Q  L  I  *  V  F  V  K  V  M  L  F  F  S  F  L  L  I  P  F  S  S  L  L  F  V  S  P  L  C  H  *  E  L  *  S  L  Q  R  I  H  S  T  R  T  A  K  S  L  N  R  S  R  I  R  I  L  F  S  L  L  Q  S  L  N  Y  S  R  N  S  P  D  L  I  S  R  *  F  *  S  T  E  *  M  I  Q  I  R  I  S  K  S  L  G  I  Y  R  N  *  F  R  E  N  L  V  K  A  D  *  K  R  E  L  H  K  T  T  *  L  L  C  F  T  H  L  V  L  P  E  Q  A  K  E  L  F  H  L  T  K  T  *  S  P  W  F  K  L  *  S  V  D  S  I  *  M  K  V  Y  K  P  S  F  V  L  Y  L  C  F  I  F  T  D  *  Q  R  L  Q  L  G  Y  *  H  L  D  L  L  L  L  Y  Y  Q  N  S  K  W  M  K  C  S  H  R  F  T  N  T  K  Q  L  L  Y  H  *  C  L  Q  F  S  L  R  L  *  I  T  L  I  G  L  R  K  N  M  I  *  A  A  W  R  V  F  S  P  A  V  L  R  *  V  R  K  *  L  R  D  L  *  R  S  I  H  L  *  G  F  C  K  G  M  G  *  Q  S  R  P  E  S  G  R  R  R  I  L  W  R  R  A  G  D  M  E  R  R  E  C  C  H  R  A  W  K  G  K  L  L  I  R  R  V  E  K  L  C  R  *  I  R  P  V  S  F  G  *  E  D  L  P  L  *  K  :  V  I  S  V  M  K  K  L  L  L  P  L  *  T  L  M  D  G  *  E  L  E  I  Y  A  I  *  M  K  M  V  S  F  L  W  L  I  D  *  R  S  S  S  N  I  K  V  I  R :   F  L  Q  Q  S  *  R  L  Y  C  S  L  I  Q  K  F  L  M  L  L  L  Y   : R  F  R  I  R  R  S  D  S  F  L  W  H  M  *  Y  V  K  L  G  V  L  Y  Q  R  V  Q  S  W  I  S  L  R  N  R :   L  L  H  I  K  E  F  G  E  L  H  L  W  L  P  Y  R  R  I  L  L  G  K  Y  S  G  R  I  *  *  S  *  Q  H  Q  N  S  E  N  K  I  Y  D  F  C  I  L  A  S  V  T  S  S  A  A  I  V  L  L  L  C  *  I  M  S  V  C  S  C  *  L  L  I  W  Y  D  C  G  G  V  R  R  E  *  F  A  K  T  Q  L  I  L  T  C  L  N  L  T  R  P  A  I  *  Q  P  P  N  V  I  M  R  S  Q  V  *  V   </first_frame>
            <second_frame>  K  Q  Y  S  *  L  *  T  E  N  P  D  D  G  T  V  *  Q  *  F  Y  R  R  S  K  I  R  L  F  T  G  E  F  N  F  L  Q  Q  T  *  T  N  S  V  S  G  E  *  I  Y  *  C  N  N  F  H  F  F  T  S  T  *  R  E  N  R  F  H  R  C  Y  D  W  S  E  T  Q  F  L  R  R  M  E  R  R  *  V  V  S  Y  *  F  I  S  *  Y  E  Y  S  *  R  *  C  C  S  S  P  F  S  *  F  H  F  L  P  Y  Y  L  S  R  R  Y  V  T  R  S  Y  N  H  Y  N  E  S  T  Q  H  E  Q  R  N  R  *  T  D  Q  G  F  E  S  C  S  R  F  Y  N  P  S  T  T  P  E  T  H  R  I  *  S  P  G  D  F  N  R  R  S  E  *  F  K  F  E  S  Q  N  R  W  G  F  T  E  I  D  S  E  K  T  *  *  K  Q  I  E  R  E  S  Y  T  K  R  R  S  Y  S  A  L  L  I  W  Y  Y  R  S  K  Q  R  S  Y  F  I  S  Q  K  P  N  R  H  G  S  N  Y  S  Q  S  I  Q  S  R  *  R  C  T  N  L  H  L  Y  C  T  Y  V  S  Y  L  R  I  S  S  V  C  S  W  V  I  S  I  W  I  Y  C  C  C  I  I  K  I  R  N  G  *  N  A  L  I  D  S  Q  I  Q  S  N  F  S  T  I  S  A  S  N  S  R  C  A  C  E  *  R  *  L  D  *  E  K  I  *  F  K  Q  L  G  E  C  S  L  R  R  C  S  V  E  *  G  S  D  *  G  I  C  R  E  V  S  I  C  E  D  F  A  R  V  W  V  D  R  V  D  R  N  R  G  V  D  G  F  F  G  G  E  P  E  I  W  N  G  G  N  V  V  T  E  H  G  R  E  N  C  *  S  G  E  W  K  S  F  A  G  E  *  D  R  *  A  L  A  K  R  T  Y  H  Y  E  R :   L  F  Q  *  *  R  S  Y  C  F  H  S  R  L  *  W  M  V  K  N  W  R  S  M  L  Y  R  *  R  W  F  H  F  C  G  *  *  I  K  G  A  H  Q  I  *  R  L  S   : G  S  S  S  R  V  R  G  F  I  A  H  S  S  R  N  F  *  C  C  C  Y  T  :  V  S  G  *  G  G  R  T  V  S  Y  G  I  C  S  T  *  N  W  E  Y  Y  I  R  E  C  S  H  G  F  H  C  E  T   : G  C  S  I  *  K  N  S  E  S  C  I  C  G  F  H  T  E  E  S  F  W  E  N  T  Q  E  G  F  D  K  A  S  N  I  K  T  L  R  T  R  F  M  I  F  A  F  *  Q  V  *  L  P  Q  Q  P  *  S  C  Y  C  A  K  *  *  V  C  A  L  V  D  Y  *  F  G  M  I  V  E  E  Y  E  G  N  D  S  L  R  L  N  S  F  *  P  V  *  I  *  L  D  P  P  F  D  S  P  L  M  L  S  *  G  H  R  F  E  L  </second_frame>
            <third_frame>   N  N  T  L  N  Y  R  R  R  I  P  M  M  A  Q  Y  N  N  N  S  T  V  D  P  K  S  G  Y  S  P  A  N  S  T  F  Y  S  K  R  R  P  I  P  F  P  A  N  E  S  I  D  V  T  T  F  I  S  S  R  A  H  S  G  K  I  A  F  I  D  A  T  T  G  R  K  L  S  F  S  D  V  W  N  A  V  E  S  L  A  T  S  L  S  V  D  M  S  I  R  K  G  D  V  V  L  L  L  S  P  N  S  I  F  F  P  I  I  C  L  A  V  M  S  L  G  A  I  I  T  T  T  N  P  L  N  T  N  S  E  I  A  K  Q  I  K  D  S  N  P  V  L  A  F  T  I  P  Q  L  L  P  K  L  T  G  F  N  L  P  V  I  L  I  D  G  V  N  D  S  N  S  N  L  K  I  V  G  D  L  Q  K  L  I  Q  R  K  P  S  E  S  R  L  K  E  R  V  T  Q  N  D  V  A  T  L  L  Y  S  S  G  T  T  G  A  S  K  G  V  I  S  S  H  K  N  L  I  A  M  V  Q  T  I  V  S  R  F  N  L  D  E  G  V  Q  T  F  I  C  T  V  P  M  F  H  I  Y  G  L  A  A  F  A  A  G  L  L  A  S  G  S  T  V  V  V  L  S  K  F  E  M  D  E  M  L  S  S  I  H  K  Y  K  A  T  S  L  P  L  V  P  P  I  L  V  A  L  V  N  N  A  D  W  I  K  K  K  Y  D  L  S  S  L  E  S  V  L  S  G  G  A  P  L  S  K  E  V  I  E  G  F  V  E  K  Y  P  S  V  R  I  L  Q  G  Y  G  L  T  E  S  T  G  I  G  A  S  T  D  S  L  E  E  S  R  R  Y  G  T  A  G  M  L  S  P  S  M  E  G  K  I  V  D  P  E  S  G  K  A  L  P  V  N  K  T  G  E  L  W  L  R  G  P  T  I  M  K   : G  Y  F  S  N  E  E  A  T  A  S  T  L  D  S  D  G  W  L  R  T  G  D  L  C  Y  I  D  E  D  G  F  I  F  V  V  D  R  L  K  E  L  I  K  Y  K  G  Y  Q  :  V  P  P  A  E  L  E  A  L  L  L  T  H  P  E  I  S  D  A  A  V  I  P :   F  P  D  K  E  V  G  Q  F  P  M  A  Y  V  V  R  K  T  G  S  T  I  S  E  S  A  V  M  D  F  I  A  K  Q  :  V  A  P  Y  K  R  I  R  R  V  A  F  V  A  S  I  P  K  N  P  S  G  K  I  L  R  K  D  L  I  K  L  A  T  S  K  L  *  E  Q  D  L  *  F  L  H  F  S  K  C  N  F  L  S  S  H  S  L  V  I  V  L  N  N  E  C  V  L  L  L  I  I  N  L  V  *  L  W  R  S  T  K  G  M  I  R  *  D  S  T  H  F  D  L  S  K  F  N  S  T  R  H  L  T  A  P  *  C  Y  H  E  V  T  G  L  S  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0115G22.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78154" stop="79414"/>
                    <exon start="80753" stop="80898"/>
                    <exon start="81328" stop="81395"/>
                    <exon start="81488" stop="81590"/>
                    <exon start="81719" stop="81832"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1689</number_coding_nucleotides>
                  <number_encoded_amino_acids>563</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NNTLNYRRRIPMMAQYNNNSTVDPKSGYSPANSTFYSKRRPIPFPANESIDVTTFISSRAHSGKIAFIDATTGRKLSFSDVWNAVESLATSLSVDMSIRKGDVVLLLSPNSIFFPIICLAVMSLGAIITTTNPLNTNSEIAKQIKDSNPVLAFTIPQLLPKLTGFNLPVILIDGVNDSNSNLKIVGDLQKLIQRKPSESRLKERVTQNDVATLLYSSGTTGASKGVISSHKNLIAMVQTIVSRFNLDEGVQTFICTVPMFHIYGLAAFAAGLLASGSTVVVLSKFEMDEMLSSIHKYKATSLPLVPPILVALVNNADWIKKKYDLSSLESVLSGGAPLSKEVIEGFVEKYPSVRILQGYGLTESTGIGASTDSLEESRRYGTAGMLSPSMEGKIVDPESGKALPVNKTGELWLRGPTIMKGYFSNEEATASTLDSDGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPEISDAAVIPFPDKEVGQFPMAYVVRKTGSTISESAVMDFIAKQVAPYKRIRRVAFVASIPKNPSGKILRKDLIKLATSKL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="87136" PGL_stop="86539"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="87136" e_stop="87131"/>
            <exon e_start="87026" e_stop="86862"/>
            <exon e_start="86785" e_stop="86539"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.430" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="87136" e_stop="87131" e_length="6"/>
          </exon>
          <intron i_serial="1" don_prob="0.430" acc_prob="0.999">
            <gDNA_intron_boundary i_start="87130" i_stop="87027" i_length="104"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="87026" e_stop="86862" e_length="165"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.975">
            <gDNA_intron_boundary i_start="86861" i_stop="86786" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="86785" e_stop="86539" e_length="247"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87136" stop="87131"/>
              <exon start="87026" stop="86862"/>
              <exon start="86785" stop="86539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216003" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="87019" stop="86862"/>
              <exon start="86785" stop="86539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225390" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86994" stop="86862"/>
              <exon start="86785" stop="86539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216371" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="86984" stop="86862"/>
              <exon start="86785" stop="86539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225834" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CGAAAG : GGTTGGGGAAAGACAATAGTCGTTGGAGTTGATAAACCGGGAGCAACGCTGACATTTAAATCTTCCGATATTCTACATTTGGGGAAAACTATCATGGGATCACTCTTTGGAGGTCTCAAACCCAAATCTGACATTCCTCTTCTTGTCAAACGTTACCTCGACAAG : GAACTGGAACTAGACAAGTTTGTAACACATGAAGTGAGTTTTCAACACATCAACACGGCTTTTGATCTGCTCGTTGAAGGAAAGAGTCTACGATGTGTTATCTGGATGGATAAGTGATCGATCCCTGTTAGTACTGATCGCGTGTTCTTGAGAAAGGATTGCTTCGTAATCTATATGAATTCGATATGTAACTACGATTTAAGCAAGACCAAGAATATTTCAGAGTAATGTTAGTACTCTTCTGCAT</gDNA_template>
            <first_frame> R  K  :  G  W  G  K  T  I  V  V  G  V  D  K  P  G  A  T  L  T  F  K  S  S  D  I  L  H  L  G  K  T  I  M  G  S  L  F  G  G  L  K  P  K  S  D  I  P  L  L  V  K  R  Y  L  D  K  :  E  L  E  L  D  K  F  V  T  H  E  V  S  F  Q  H  I  N  T  A  F  D  L  L  V  E  G  K  S  L  R  C  V  I  W  M  D  K  *  S  I  P  V  S  T  D  R  V  F  L  R  K  D  C  F  V  I  Y  M  N  S  I  C  N  Y  D  L  S  K  T  K  N  I  S  E  *  C  *  Y  S  S  A  </first_frame>
            <second_frame>  E  R :   V  G  E  R  Q  *  S  L  E  L  I  N  R  E  Q  R  *  H  L  N  L  P  I  F  Y  I  W  G  K  L  S  W  D  H  S  L  E  V  S  N  P  N  L  T  F  L  F  L  S  N  V  T  S  T  R :   N  W  N  *  T  S  L  *  H  M  K  *  V  F  N  T  S  T  R  L  L  I  C  S  L  K  E  R  V  Y  D  V  L  S  G  W  I  S  D  R  S  L  L  V  L  I  A  C  S  *  E  R  I  A  S  *  S  I  *  I  R  Y  V  T  T  I  *  A  R  P  R  I  F  Q  S  N  V  S  T  L  L  H </second_frame>
            <third_frame>   K   : G  L  G  K  D  N  S  R  W  S  *  *  T  G  S  N  A  D  I  *  I  F  R  Y  S  T  F  G  E  N  Y  H  G  I  T  L  W  R  S  Q  T  Q  I  *  H  S  S  S  C  Q  T  L  P  R  Q   : G  T  G  T  R  Q  V  C  N  T  *  S  E  F  S  T  H  Q  H  G  F  *  S  A  R  *  R  K  E  S  T  M  C  Y  L  D  G  *  V  I  D  P  C  *  Y  *  S  R  V  L  E  K  G  L  L  R  N  L  Y  E  F  D  M  *  L  R  F  K  Q  D  Q  E  Y  F  R  V  M  L  V  L  F  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0115G22.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="87136" stop="87131"/>
                    <exon start="87026" stop="86862"/>
                    <exon start="86785" stop="86669"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>285</number_coding_nucleotides>
                  <number_encoded_amino_acids>95</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RKGWGKTIVVGVDKPGATLTFKSSDILHLGKTIMGSLFGGLKPKSDIPLLVKRYLDKELELDKFVTHEVSFQHINTAFDLLVEGKSLRCVIWMDK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="90311" PGL_stop="87139"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="90311" e_stop="90181"/>
            <exon e_start="89524" e_stop="89388"/>
            <exon e_start="89281" e_stop="89235"/>
            <exon e_start="88474" e_stop="88149"/>
            <exon e_start="87930" e_stop="87848"/>
            <exon e_start="87762" e_stop="87687"/>
            <exon e_start="87562" e_stop="87498"/>
            <exon e_start="87226" e_stop="87139"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.581" acc_prob="0.969" e_score="0.992"/>
          <exon-intron don_prob="0.803" acc_prob="0.973" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.933" acc_prob="0.821" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.750" e_score="1.000"/>
          <exon-intron don_prob="0.869" acc_prob="0.492" e_score="1.000"/>
          <exon-only e_score="0.966"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.992">
            <gDNA_exon_boundary e_start="90311" e_stop="90181" e_length="131"/>
          </exon>
          <intron i_serial="1" don_prob="0.581" acc_prob="0.969">
            <gDNA_intron_boundary i_start="90180" i_stop="89525" i_length="656"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="89524" e_stop="89388" e_length="137"/>
          </exon>
          <intron i_serial="2" don_prob="0.803" acc_prob="0.973">
            <gDNA_intron_boundary i_start="89387" i_stop="89282" i_length="106"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="89281" e_stop="89235" e_length="47"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.000">
            <gDNA_intron_boundary i_start="89234" i_stop="88475" i_length="760"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="88474" e_stop="88149" e_length="326"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="88148" i_stop="87931" i_length="218"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="87930" e_stop="87848" e_length="83"/>
          </exon>
          <intron i_serial="5" don_prob="0.933" acc_prob="0.821">
            <gDNA_intron_boundary i_start="87847" i_stop="87763" i_length="85"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="87762" e_stop="87687" e_length="76"/>
          </exon>
          <intron i_serial="6" don_prob="0.996" acc_prob="0.750">
            <gDNA_intron_boundary i_start="87686" i_stop="87563" i_length="124"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="87562" e_stop="87498" e_length="65"/>
          </exon>
          <intron i_serial="7" don_prob="0.869" acc_prob="0.492">
            <gDNA_intron_boundary i_start="87497" i_stop="87227" i_length="271"/>
          </intron>
          <exon e_serial="8" e_score="0.966">
            <gDNA_exon_boundary e_start="87226" e_stop="87139" e_length="88"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90311" stop="90181"/>
              <exon start="89524" stop="89388"/>
              <exon start="89281" stop="89235"/>
              <exon start="88474" stop="88196"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90310" stop="90181"/>
              <exon start="89524" stop="89388"/>
              <exon start="89281" stop="89235"/>
              <exon start="88474" stop="88149"/>
              <exon start="87930" stop="87848"/>
              <exon start="87762" stop="87758"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327770" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90234" stop="90181"/>
              <exon start="89524" stop="89388"/>
              <exon start="89281" stop="89235"/>
              <exon start="88474" stop="88149"/>
              <exon start="87930" stop="87848"/>
              <exon start="87762" stop="87687"/>
              <exon start="87562" stop="87498"/>
              <exon start="87226" stop="87139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E728606" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90203" stop="90181"/>
              <exon start="89524" stop="89388"/>
              <exon start="89281" stop="89235"/>
              <exon start="88474" stop="88149"/>
              <exon start="87930" stop="87848"/>
              <exon start="87762" stop="87687"/>
              <exon start="87562" stop="87498"/>
              <exon start="87226" stop="87170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731934" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAGAATTGAAAATACAAACACACCACACACCCTCCATTAGAGTTTAAGTTTTTTTTTTTTAAGCTTTTAACAATGGCTGCCACACAAGCTGAGTTGAGCAAAACTGCTGGAAAACCAATTCACTGCAGAG : CGGCAGTGGCAAGAAAAGCAGGAGAACCTCTGGTGATAGAGGAAGTGATTGTGGCTCCTCCTAAAGCCTGTGAAGTTCGTATAAAAATCGTTTGTACTTCTCTCTGTCACAGTGATGTTACCTTCTGGAAGTTGAAA : GACTTCCCTGGATGCTTTCCAAGAATATTGGGACACGAAGCTTTCGG : GATTGTGGAGAGTGTTGGAGAAAATGTCCAGGATTTAAAAGAAGGAGATTCAGTTATCCCGATATTTTTGCCCGACTGTACTGAATGTATAGATTGCACATCCAAGAAGAGCAACAGTTGTTCACAATTCCAATTTAAGGTATCTCCGTGGATGCTTAGAGATGGTACTAGTCGATTCACTACTGTTGATGGAGAAACTTTATACCATTTTCTGTCTGTATCAAGTTTCGCCGAGTACACTGTTGTAGACATTGCTAATGTAACGAAGATCGATCCTCGTGTTCCACCTAACAGGGCATGCCTCTTTAGTTGTGGAGTCTCAACAG : GAGTAGGTGCTGCCCTGAAAACTGCAAACGTGGAACAAGGATCGACTGTTGTGATATTTGGTTTGGGCGGAATTGGATTAGCA : GTTGCAGAGGGAGCGAGGATATGTGGTGCTTCAAGAATTATTGGCGTAGATATAAACACTGACAAGTTCGAAATAG : GGAAGCAATTTGGAGTGACTGATTTTGTCGATTCGAATAGCTATGGGGATAAACCTATTAGCCAG : GTGATAAATGAGATGACTAACGGAGGTGCTGACTACTGCTTCGAGTGTGTTGGTATGGGAACACTCGTGGAGGAAGCATATGCCTGCT</gDNA_template>
            <first_frame> *  E  L  K  I  Q  T  H  H  T  P  S  I  R  V  *  V  F  F  F  *  A  F  N  N  G  C  H  T  S  *  V  E  Q  N  C  W  K  T  N  S  L  Q  S :   G  S  G  K  K  S  R  R  T  S  G  D  R  G  S  D  C  G  S  S  *  S  L  *  S  S  Y  K  N  R  L  Y  F  S  L  S  Q  *  C  Y  L  L  E  V  E   : R  L  P  W  M  L  S  K  N  I  G  T  R  S  F  R  :  D  C  G  E  C  W  R  K  C  P  G  F  K  R  R  R  F  S  Y  P  D  I  F  A  R  L  Y  *  M  Y  R  L  H  I  Q  E  E  Q  Q  L  F  T  I  P  I  *  G  I  S  V  D  A  *  R  W  Y  *  S  I  H  Y  C  *  W  R  N  F  I  P  F  S  V  C  I  K  F  R  R  V  H  C  C  R  H  C  *  C  N  E  D  R  S  S  C  S  T  *  Q  G  M  P  L  *  L  W  S  L  N  R :   S  R  C  C  P  E  N  C  K  R  G  T  R  I  D  C  C  D  I  W  F  G  R  N  W  I  S   : S  C  R  G  S  E  D  M  W  C  F  K  N  Y  W  R  R  Y  K  H  *  Q  V  R  N  R :   E  A  I  W  S  D  *  F  C  R  F  E  *  L  W  G  *  T  Y  *  P   : G  D  K  *  D  D  *  R  R  C  *  L  L  L  R  V  C  W  Y  G  N  T  R  G  G  S  I  C  L   </first_frame>
            <second_frame>  K  N  *  K  Y  K  H  T  T  H  P  P  L  E  F  K  F  F  F  F  K  L  L  T  M  A  A  T  Q  A  E  L  S  K  T  A  G  K  P  I  H  C  R   : A  A  V  A  R  K  A  G  E  P  L  V  I  E  E  V  I  V  A  P  P  K  A  C  E  V  R  I  K  I  V  C  T  S  L  C  H  S  D  V  T  F  W  K  L  K  :  D  F  P  G  C  F  P  R  I  L  G  H  E  A  F  G :   I  V  E  S  V  G  E  N  V  Q  D  L  K  E  G  D  S  V  I  P  I  F  L  P  D  C  T  E  C  I  D  C  T  S  K  K  S  N  S  C  S  Q  F  Q  F  K  V  S  P  W  M  L  R  D  G  T  S  R  F  T  T  V  D  G  E  T  L  Y  H  F  L  S  V  S  S  F  A  E  Y  T  V  V  D  I  A  N  V  T  K  I  D  P  R  V  P  P  N  R  A  C  L  F  S  C  G  V  S  T   : G  V  G  A  A  L  K  T  A  N  V  E  Q  G  S  T  V  V  I  F  G  L  G  G  I  G  L  A  :  V  A  E  G  A  R  I  C  G  A  S  R  I  I  G  V  D  I  N  T  D  K  F  E  I   : G  K  Q  F  G  V  T  D  F  V  D  S  N  S  Y  G  D  K  P  I  S  Q  :  V  I  N  E  M  T  N  G  G  A  D  Y  C  F  E  C  V  G  M  G  T  L  V  E  E  A  Y  A  C  </second_frame>
            <third_frame>   R  I  E  N  T  N  T  P  H  T  L  H  *  S  L  S  F  F  F  L  S  F  *  Q  W  L  P  H  K  L  S  *  A  K  L  L  E  N  Q  F  T  A  E  :  R  Q  W  Q  E  K  Q  E  N  L  W  *  *  R  K  *  L  W  L  L  L  K  P  V  K  F  V  *  K  S  F  V  L  L  S  V  T  V  M  L  P  S  G  S  *  K :   T  S  L  D  A  F  Q  E  Y  W  D  T  K  L  S   : G  L  W  R  V  L  E  K  M  S  R  I  *  K  K  E  I  Q  L  S  R  Y  F  C  P  T  V  L  N  V  *  I  A  H  P  R  R  A  T  V  V  H  N  S  N  L  R  Y  L  R  G  C  L  E  M  V  L  V  D  S  L  L  L  M  E  K  L  Y  T  I  F  C  L  Y  Q  V  S  P  S  T  L  L  *  T  L  L  M  *  R  R  S  I  L  V  F  H  L  T  G  H  A  S  L  V  V  E  S  Q  Q  :  E  *  V  L  P  *  K  L  Q  T  W  N  K  D  R  L  L  *  Y  L  V  W  A  E  L  D  *  Q :   L  Q  R  E  R  G  Y  V  V  L  Q  E  L  L  A  *  I  *  T  L  T  S  S  K  *  :  G  S  N  L  E  *  L  I  L  S  I  R  I  A  M  G  I  N  L  L  A  R :   *  *  M  R  *  L  T  E  V  L  T  T  A  S  S  V  L  V  W  E  H  S  W  R  K  H  M  P  A </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0115G22.1" strand="-"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="90301" stop="90181"/>
                    <exon start="89524" stop="89388"/>
                    <exon start="89281" stop="89235"/>
                    <exon start="88474" stop="88149"/>
                    <exon start="87930" stop="87848"/>
                    <exon start="87762" stop="87687"/>
                    <exon start="87562" stop="87498"/>
                    <exon start="87226" stop="87140"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>942</number_coding_nucleotides>
                  <number_encoded_amino_acids>314</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KYKHTTHPPLEFKFFFFKLLTMAATQAELSKTAGKPIHCRAAVARKAGEPLVIEEVIVAPPKACEVRIKIVCTSLCHSDVTFWKLKDFPGCFPRILGHEAFGIVESVGENVQDLKEGDSVIPIFLPDCTECIDCTSKKSNSCSQFQFKVSPWMLRDGTSRFTTVDGETLYHFLSVSSFAEYTVVDIANVTKIDPRVPPNRACLFSCGVSTGVGAALKTANVEQGSTVVIFGLGGIGLAVAEGARICGASRIIGVDINTDKFEIGKQFGVTDFVDSNSYGDKPISQVINEMTNGGADYCFECVGMGTLVEEAYAC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="-" PGL_start="114066" PGL_stop="111527"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114066" e_stop="113650"/>
            <exon e_start="111804" e_stop="111703"/>
            <exon e_start="111624" e_stop="111527"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.989" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="114066" e_stop="113650" e_length="417"/>
          </exon>
          <intron i_serial="1" don_prob="0.989" acc_prob="0.997">
            <gDNA_intron_boundary i_start="113649" i_stop="111805" i_length="1845"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="111804" e_stop="111703" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.987">
            <gDNA_intron_boundary i_start="111702" i_stop="111625" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="111624" e_stop="111527" e_length="98"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114066" stop="113650"/>
              <exon start="111804" stop="111703"/>
              <exon start="111624" stop="111527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342849" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTCTCTTTCTTCTTCTAACCCCCCACCCCCCTTTCTCCCCCCACCCCCACACCACCGGAGGCATAAACCCTAACTCTACTCCGATGGCTTTAGCCGGCGGCTATGCAAATTCTAAGTTAATCCAAAACGACGCTGCCGTGGCGCCACCAAAACCTTTGTCATCTTCTGTAATCGAACGATATAAGTCGGCGTTGAAGGAGAGGGAAATAGAAATTAGGGCTTCTATGCAGGGAGGTGATGATGATGTTATCGTGTTGCCTCCGTCTATGAATGAGATTGTTAGGCTTTATGAAATGTTGTTGTCGGAACTGGCTTTTAATTCTAAGCCTATCATTACTGACCTTACCATCATTGCTGGCGAACAGAGAGAACATGGTGAAGGCATTGCTCATGCGATTTGTAATCGGATTTTAGAG : GTCCCAGTTGAGCAGAAACTACCTGCATTATACCTTCTGGATAGTGTTGTAAAAAATATTGGCAAGGACTACATCAAGCATTTCTCTGCCCATTTACCTGAG : GTTTTCTGTGAGGCATATAGGCAAGTGCACCCTAGCATGCATCCTGCAATGCGCCACCTCTTTGGGACATGGTCAACTGTGTTCCCAGCACCTGTTCT</gDNA_template>
            <first_frame> S  L  F  L  L  L  T  P  H  P  P  F  S  P  H  P  H  T  T  G  G  I  N  P  N  S  T  P  M  A  L  A  G  G  Y  A  N  S  K  L  I  Q  N  D  A  A  V  A  P  P  K  P  L  S  S  S  V  I  E  R  Y  K  S  A  L  K  E  R  E  I  E  I  R  A  S  M  Q  G  G  D  D  D  V  I  V  L  P  P  S  M  N  E  I  V  R  L  Y  E  M  L  L  S  E  L  A  F  N  S  K  P  I  I  T  D  L  T  I  I  A  G  E  Q  R  E  H  G  E  G  I  A  H  A  I  C  N  R  I  L  E  :  V  P  V  E  Q  K  L  P  A  L  Y  L  L  D  S  V  V  K  N  I  G  K  D  Y  I  K  H  F  S  A  H  L  P  E  :  V  F  C  E  A  Y  R  Q  V  H  P  S  M  H  P  A  M  R  H  L  F  G  T  W  S  T  V  F  P  A  P  V   </first_frame>
            <second_frame>  L  S  F  F  F  *  P  P  T  P  L  S  P  P  T  P  T  P  P  E  A  *  T  L  T  L  L  R  W  L  *  P  A  A  M  Q  I  L  S  *  S  K  T  T  L  P  W  R  H  Q  N  L  C  H  L  L  *  S  N  D  I  S  R  R  *  R  R  G  K  *  K  L  G  L  L  C  R  E  V  M  M  M  L  S  C  C  L  R  L  *  M  R  L  L  G  F  M  K  C  C  C  R  N  W  L  L  I  L  S  L  S  L  L  T  L  P  S  L  L  A  N  R  E  N  M  V  K  A  L  L  M  R  F  V  I  G  F  *  R :   S  Q  L  S  R  N  Y  L  H  Y  T  F  W  I  V  L  *  K  I  L  A  R  T  T  S  S  I  S  L  P  I  Y  L  R :   F  S  V  R  H  I  G  K  C  T  L  A  C  I  L  Q  C  A  T  S  L  G  H  G  Q  L  C  S  Q  H  L  F  </second_frame>
            <third_frame>   S  L  S  S  S  N  P  P  P  P  F  L  P  P  P  P  H  H  R  R  H  K  P  *  L  Y  S  D  G  F  S  R  R  L  C  K  F  *  V  N  P  K  R  R  C  R  G  A  T  K  T  F  V  I  F  C  N  R  T  I  *  V  G  V  E  G  E  G  N  R  N  *  G  F  Y  A  G  R  *  *  *  C  Y  R  V  A  S  V  Y  E  *  D  C  *  A  L  *  N  V  V  V  G  T  G  F  *  F  *  A  Y  H  Y  *  P  Y  H  H  C  W  R  T  E  R  T  W  *  R  H  C  S  C  D  L  *  S  D  F  R   : G  P  S  *  A  E  T  T  C  I  I  P  S  G  *  C  C  K  K  Y  W  Q  G  L  H  Q  A  F  L  C  P  F  T  *   : G  F  L  *  G  I  *  A  S  A  P  *  H  A  S  C  N  A  P  P  L  W  D  M  V  N  C  V  P  S  T  C  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0115G22.1" strand="-"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="114066" stop="113650"/>
                    <exon start="111804" stop="111703"/>
                    <exon start="111624" stop="111529"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>615</number_coding_nucleotides>
                  <number_encoded_amino_acids>205</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLFLLLTPHPPFSPHPHTTGGINPNSTPMALAGGYANSKLIQNDAAVAPPKPLSSSVIERYKSALKEREIEIRASMQGGDDDVIVLPPSMNEIVRLYEMLLSELAFNSKPIITDLTIIAGEQREHGEGIAHAICNRILEVPVEQKLPALYLLDSVVKNIGKDYIKHFSAHLPEVFCEAYRQVHPSMHPAMRHLFGTWSTVFPAPV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="119812" PGL_stop="119167"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="119812" e_stop="119523"/>
            <exon e_start="119484" e_stop="119167"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.952"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="119812" e_stop="119523" e_length="290"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="119522" i_stop="119485" i_length="38"/>
          </intron>
          <exon e_serial="2" e_score="0.962">
            <gDNA_exon_boundary e_start="119484" e_stop="119167" e_length="318"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119812" stop="119523"/>
              <exon start="119484" stop="119259"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242359" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="119403" stop="119167"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209683" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CCTAATCTACTTTGTTAATGATGATGCCTTGGTATAAAAGAAGGCTTGATGAACGAAAGTGGTGAGATTAGGGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATATGGATCGAGTGTTACGTTCCGACACCAGGATAGAATATGGATCGGGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAGAATGAGGATCGGAGTGTCACGTTCCGACACCAGGATAGAATATGGATCGGGTGCCACGTTCCGGTACCAGGATAG : TATATTGAGGAGCGGAGTGTCACGTACCGACACGAGGAGAATAAATATAATGAATCTTGAAATATGTTAATATATCCAATCTAATGAACTAAATTCCCAAATGAGTATGATGAGGAGGTGTGAGTCCTCATTGATGTGCTTGGTGTTGTAACCAAGGGTTATGGTAACTGTAAATGCTGCATGCTAAGGATATTAGTTGATTTTATGATATTGCTTAATACATACTGTTTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATTGTTTTCTTCTTGTTTATTTGTG</gDNA_template>
            <first_frame> P  N  L  L  C  *  *  *  C  L  G  I  K  E  G  L  M  N  E  S  G  E  I  R  G  S  G  A  T  F  R  Y  Q  D  R  I  W  I  E  C  Y  V  P  T  P  G  *  N  M  D  R  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  R  M  R  I  G  V  S  R  S  D  T  R  I  E  Y  G  S  G  A  T  F  R  Y  Q  D  S :   I  L  R  S  G  V  S  R  T  D  T  R  R  I  N  I  M  N  L  E  I  C  *  Y  I  Q  S  N  E  L  N  S  Q  M  S  M  M  R  R  C  E  S  S  L  M  C  L  V  L  *  P  R  V  M  V  T  V  N  A  A  C  *  G  Y  *  L  I  L  *  Y  C  L  I  H  T  V  F  Y  F  E  L  A  D  D  I  Y  S  V  P  V  F  C  T  D  P  Y  F  Y  C  F  L  L  V  Y  L   </first_frame>
            <second_frame>  L  I  Y  F  V  N  D  D  A  L  V  *  K  K  A  *  *  T  K  V  V  R  L  G  D  R  V  P  R  S  G  T  R  I  E  Y  G  S  S  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I  E  *  G  S  E  C  H  V  P  T  P  G  *  N  M  D  R  V  P  R  S  G  T  R  I   : V  Y  *  G  A  E  C  H  V  P  T  R  G  E  *  I  *  *  I  L  K  Y  V  N  I  S  N  L  M  N  *  I  P  K  *  V  *  *  G  G  V  S  P  H  *  C  A  W  C  C  N  Q  G  L  W  *  L  *  M  L  H  A  K  D  I  S  *  F  Y  D  I  A  *  Y  I  L  F  S  I  L  S  W  P  M  I  S  T  Q  Y  P  C  F  V  L  T  P  T  F  I  V  F  F  L  F  I  C  </second_frame>
            <third_frame>   *  S  T  L  L  M  M  M  P  W  Y  K  R  R  L  D  E  R  K  W  *  D  *  G  I  G  C  H  V  P  V  P  G  *  N  M  D  R  V  L  R  S  D  T  R  I  E  Y  G  S  G  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  N  E  D  R  S  V  T  F  R  H  Q  D  R  I  W  I  G  C  H  V  P  V  P  G  *  :  Y  I  E  E  R  S  V  T  Y  R  H  E  E  N  K  Y  N  E  S  *  N  M  L  I  Y  P  I  *  *  T  K  F  P  N  E  Y  D  E  E  V  *  V  L  I  D  V  L  G  V  V  T  K  G  Y  G  N  C  K  C  C  M  L  R  I  L  V  D  F  M  I  L  L  N  T  Y  C  F  L  F  *  V  G  R  *  Y  L  L  S  T  R  V  L  Y  *  P  L  L  L  L  F  S  S  C  L  F  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0115G22.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="119671" stop="119523"/>
                    <exon start="119484" stop="119415"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NMDRVSRSDTRIEYGSGATFRYQDRMRIGVSRSDTRIEYGSGATFRYQDSILRSGVSRTDTRRINIMNLEIC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="+" PGL_start="132080" PGL_stop="132646"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="132080" e_stop="132646"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.905"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.905">
            <gDNA_exon_boundary e_start="132080" e_stop="132646" e_length="567"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132080" stop="132646"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132211" stop="132579"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332350" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACGAAGTTGCTACTTGCAAAGAAATCCCCAGTTGTCAGTTGGATTCAAGATGAGTAATGGAGATGTATGCCTTCTTGATAGTGCTACAACGCATACAATATTAAAAGAAAAGAAATACTTTTCTAATTTGGTTATGAAAATGGCATATGTCAACACAATATCAGGTAGTACAAAATTAATTGAGGGCTCTGGAAGAGCGACCTTATTACTACCTGGAGGGACAATATTAAGCATTGATAATGCATTATATTGTAGTAAGTCTCAAAGAAACTTATTAAGTTTCAAAGTTATTCGCCAAAATGGCTATCATGTTGAGATAGCTAATGAAGGAAAGGTTGAATACCTTTACATTACTACAATTAATGTTGAGAAGAAAATTGTGCATGAAAAATTACCTGCATTTTCTTCTGGGTTGTACTATACAAGTATAAGTACAGTTGAATCACATGCCGTAGTAAACAAAAGGTTTACTAATTTTAATGATTTTATCATTTGGCATGACCGGTTGGGCCATCCTGGATTTAATATGATGCGCAAAATCATTGAGAATTCACATGGACACACCTT</gDNA_template>
            <first_frame> T  K  L  L  L  A  K  K  S  P  V  V  S  W  I  Q  D  E  *  W  R  C  M  P  S  *  *  C  Y  N  A  Y  N  I  K  R  K  E  I  L  F  *  F  G  Y  E  N  G  I  C  Q  H  N  I  R  *  Y  K  I  N  *  G  L  W  K  S  D  L  I  T  T  W  R  D  N  I  K  H  *  *  C  I  I  L  *  *  V  S  K  K  L  I  K  F  Q  S  Y  S  P  K  W  L  S  C  *  D  S  *  *  R  K  G  *  I  P  L  H  Y  Y  N  *  C  *  E  E  N  C  A  *  K  I  T  C  I  F  F  W  V  V  L  Y  K  Y  K  Y  S  *  I  T  C  R  S  K  Q  K  V  Y  *  F  *  *  F  Y  H  L  A  *  P  V  G  P  S  W  I  *  Y  D  A  Q  N  H  *  E  F  T  W  T  H  L </first_frame>
            <second_frame>  R  S  C  Y  L  Q  R  N  P  Q  L  S  V  G  F  K  M  S  N  G  D  V  C  L  L  D  S  A  T  T  H  T  I  L  K  E  K  K  Y  F  S  N  L  V  M  K  M  A  Y  V  N  T  I  S  G  S  T  K  L  I  E  G  S  G  R  A  T  L  L  L  P  G  G  T  I  L  S  I  D  N  A  L  Y  C  S  K  S  Q  R  N  L  L  S  F  K  V  I  R  Q  N  G  Y  H  V  E  I  A  N  E  G  K  V  E  Y  L  Y  I  T  T  I  N  V  E  K  K  I  V  H  E  K  L  P  A  F  S  S  G  L  Y  Y  T  S  I  S  T  V  E  S  H  A  V  V  N  K  R  F  T  N  F  N  D  F  I  I  W  H  D  R  L  G  H  P  G  F  N  M  M  R  K  I  I  E  N  S  H  G  H  T   </second_frame>
            <third_frame>   E  V  A  T  C  K  E  I  P  S  C  Q  L  D  S  R  *  V  M  E  M  Y  A  F  L  I  V  L  Q  R  I  Q  Y  *  K  K  R  N  T  F  L  I  W  L  *  K  W  H  M  S  T  Q  Y  Q  V  V  Q  N  *  L  R  A  L  E  E  R  P  Y  Y  Y  L  E  G  Q  Y  *  A  L  I  M  H  Y  I  V  V  S  L  K  E  T  Y  *  V  S  K  L  F  A  K  M  A  I  M  L  R  *  L  M  K  E  R  L  N  T  F  T  L  L  Q  L  M  L  R  R  K  L  C  M  K  N  Y  L  H  F  L  L  G  C  T  I  Q  V  *  V  Q  L  N  H  M  P  *  *  T  K  G  L  L  I  L  M  I  L  S  F  G  M  T  G  W  A  I  L  D  L  I  *  C  A  K  S  L  R  I  H  M  D  T  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0115G22.1" strand="+"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132081" stop="132644"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>564</number_coding_nucleotides>
                  <number_encoded_amino_acids>188</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSCYLQRNPQLSVGFKMSNGDVCLLDSATTHTILKEKKYFSNLVMKMAYVNTISGSTKLIEGSGRATLLLPGGTILSIDNALYCSKSQRNLLSFKVIRQNGYHVEIANEGKVEYLYITTINVEKKIVHEKLPAFSSGLYYTSISTVESHAVVNKRFTNFNDFIIWHDRLGHPGFNMMRKIIENSHGHT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="133957" PGL_stop="135685"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="133957" e_stop="135685"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.982">
            <gDNA_exon_boundary e_start="133957" e_stop="135685" e_length="1729"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133957" stop="134667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331947" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134533" stop="135170"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205887" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134573" stop="135200"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209835" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134573" stop="135148"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134623" stop="135175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134788" stop="135551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211563" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134815" stop="135385"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201786" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135119" stop="135517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135305" stop="135685"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351886" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATAATGCAACAAGATGAAGATTTTGAGCCAAAATCTGTTCACGAATGTAGACAGAGAAATGATTGGCCAAAATGGAAGGATGCAATTCAAGCTGAATTGGCTTCACTAGAAAAACGTGAAGTTTTTTGACCAATAATCCGAACACCTGAAGGTATCAAGCCAGTGGGGTACAAATAGGTTTTTGTATGAAAAAGAAATGAGAAAGGTGAAGTCATGAGATATAAGTCCCGACTCGTTGCTCAAGGTTTTTCTCAAAGACCTGGCATTGATTATATGGAGACATATTCTCTAGTGGTAGATGCAATCACCTTTAGATATCTCATAAATCTGGCAGTTCATGAAAAACTTGAAATGCGTCTAATGGACGTTGTCACAGCCTATCTATATGGCTCATTGGACCACAACATTTTCATGAAAATTCCTGAAGCATTTAAAGTGCCTGAAACATACAAAGATTCAAGAGAAACTTGTTCAATAAAGCTTCAGAAATCTCTGTATGGACTGAAACAATCAGGAAGGATGTGGTACAATCGTTTGAGTGAATATTTGTTAAAGAAAGGGTACAAAAATGACCCGATTTGTCCCTGCATTTTCATTAAACGGTTGGGGTCTGAATTTGTAATAATAGCTGTGTATGTTGATGATTTGAACATCATTGGAACTCGTAAAGAGCTTTTAGAAGCTGTTGAGTTTCTGAAAAGAGAATTTGAAATGAAAGATCTCGGCAAGACAAAATTTTGTCTTGGTCTACAGATTGAGAATTTGTCAAATGGAATACTTGTTCATCAATCAACGTACACAGAAAAGATACTAAAGCGTTTTTACATGGATAACTCACATCCATTGAGTACTCCAATGGTGGTAAGATCTCTTGACATCAATACAGATCCATTTCGACCTCAAGAGAATGATGAATAGCTTCTTGGTGATGAAACTCCTTATCTTAGTGCGATCGGGGCACTAATGTACCTTGCTAACAATACTCGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGTGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATGCAGGGTATTTATCAGATCCGCATAAAGCTCGATCACAAACAGGCTATTTGTTTACATGTGGAGACACGGCAATATCTTGGCGATCAATGAAGCAAACATTGGTAGCCACTTCTTCAAATCATGCAAAAATAATAGCCATCCATGAAGCAAGTCGAGAGTGCGTCTGGTTGAGATGAATGACCCATCATATTCAGAAAATGTGTGGTTTTTCTTTGAAAAAGAATATACCAACCACAATGTACGAAGATAATGCTGCATGTATAGCTCAATTGAAAGGAGGATACATCAAAGGAGACCGGACAAAGCATATCTCACCAAAGTTCTTTTTCACGCATGATCTTCAACAAAATGGTGAGATAGAAGTTCAACAAATTCGTTCAAGTGATAATCTTGCTGATTTATTCACTAAGGCATTGCCAACATCAACATTTGAGAAGTTGAGATACAAGATTGGAATGCGCCGTCTCCGAGATATCAAGTAAAGTTTTCATCAGGGGGAGCGAAATACGCGTTGTACTCTTTTCCTTAACTATGGTTTTGTCCCAAGTTAGGTTTTCCTGGTAAGGTTTTTAAT</gDNA_template>
            <first_frame> K  *  C  N  K  M  K  I  L  S  Q  N  L  F  T  N  V  D  R  E  M  I  G  Q  N  G  R  M  Q  F  K  L  N  W  L  H  *  K  N  V  K  F  F  D  Q  *  S  E  H  L  K  V  S  S  Q  W  G  T  N  R  F  L  Y  E  K  E  M  R  K  V  K  S  *  D  I  S  P  D  S  L  L  K  V  F  L  K  D  L  A  L  I  I  W  R  H  I  L  *  W  *  M  Q  S  P  L  D  I  S  *  I  W  Q  F  M  K  N  L  K  C  V  *  W  T  L  S  Q  P  I  Y  M  A  H  W  T  T  T  F  S  *  K  F  L  K  H  L  K  C  L  K  H  T  K  I  Q  E  K  L  V  Q  *  S  F  R  N  L  C  M  D  *  N  N  Q  E  G  C  G  T  I  V  *  V  N  I  C  *  R  K  G  T  K  M  T  R  F  V  P  A  F  S  L  N  G  W  G  L  N  L  *  *  *  L  C  M  L  M  I  *  T  S  L  E  L  V  K  S  F  *  K  L  L  S  F  *  K  E  N  L  K  *  K  I  S  A  R  Q  N  F  V  L  V  Y  R  L  R  I  C  Q  M  E  Y  L  F  I  N  Q  R  T  Q  K  R  Y  *  S  V  F  T  W  I  T  H  I  H  *  V  L  Q  W  W  *  D  L  L  T  S  I  Q  I  H  F  D  L  K  R  M  M  N  S  F  L  V  M  K  L  L  I  L  V  R  S  G  H  *  C  T  L  L  T  I  L  D  Q  I  S  V  L  Q  *  V  Y  W  Q  D  S  V  P  P  Q  Q  K  D  I  G  M  V  L  N  T  Y  F  D  I  F  E  G  P  W  T  W  V  Y  S  I  P  M  N  P  N  Q  N  *  L  V  T  Q  M  Q  G  I  Y  Q  I  R  I  K  L  D  H  K  Q  A  I  C  L  H  V  E  T  R  Q  Y  L  G  D  Q  *  S  K  H  W  *  P  L  L  Q  I  M  Q  K  *  *  P  S  M  K  Q  V  E  S  A  S  G  *  D  E  *  P  I  I  F  R  K  C  V  V  F  L  *  K  R  I  Y  Q  P  Q  C  T  K  I  M  L  H  V  *  L  N  *  K  E  D  T  S  K  E  T  G  Q  S  I  S  H  Q  S  S  F  S  R  M  I  F  N  K  M  V  R  *  K  F  N  K  F  V  Q  V  I  I  L  L  I  Y  S  L  R  H  C  Q  H  Q  H  L  R  S  *  D  T  R  L  E  C  A  V  S  E  I  S  S  K  V  F  I  R  G  S  E  I  R  V  V  L  F  S  L  T  M  V  L  S  Q  V  R  F  S  W  *  G  F  *  </first_frame>
            <second_frame>  N  N  A  T  R  *  R  F  *  A  K  I  C  S  R  M  *  T  E  K  *  L  A  K  M  E  G  C  N  S  S  *  I  G  F  T  R  K  T  *  S  F  L  T  N  N  P  N  T  *  R  Y  Q  A  S  G  V  Q  I  G  F  C  M  K  K  K  *  E  R  *  S  H  E  I  *  V  P  T  R  C  S  R  F  F  S  K  T  W  H  *  L  Y  G  D  I  F  S  S  G  R  C  N  H  L  *  I  S  H  K  S  G  S  S  *  K  T  *  N  A  S  N  G  R  C  H  S  L  S  I  W  L  I  G  P  Q  H  F  H  E  N  S  *  S  I  *  S  A  *  N  I  Q  R  F  K  R  N  L  F  N  K  A  S  E  I  S  V  W  T  E  T  I  R  K  D  V  V  Q  S  F  E  *  I  F  V  K  E  R  V  Q  K  *  P  D  L  S  L  H  F  H  *  T  V  G  V  *  I  C  N  N  S  C  V  C  *  *  F  E  H  H  W  N  S  *  R  A  F  R  S  C  *  V  S  E  K  R  I  *  N  E  R  S  R  Q  D  K  I  L  S  W  S  T  D  *  E  F  V  K  W  N  T  C  S  S  I  N  V  H  R  K  D  T  K  A  F  L  H  G  *  L  T  S  I  E  Y  S  N  G  G  K  I  S  *  H  Q  Y  R  S  I  S  T  S  R  E  *  *  I  A  S  W  *  *  N  S  L  S  *  C  D  R  G  T  N  V  P  C  *  Q  Y  S  T  R  Y  L  F  C  S  K  S  T  G  K  I  Q  F  L  P  N  K  K  T  L  E  W  C  *  T  H  T  S  I  S  S  R  D  H  G  H  G  F  I  L  F  Q  *  I  Q  I  R  T  D  W  L  R  R  C  R  V  F  I  R  S  A  *  S  S  I  T  N  R  L  F  V  Y  M  W  R  H  G  N  I  L  A  I  N  E  A  N  I  G  S  H  F  F  K  S  C  K  N  N  S  H  P  *  S  K  S  R  V  R  L  V  E  M  N  D  P  S  Y  S  E  N  V  W  F  F  F  E  K  E  Y  T  N  H  N  V  R  R  *  C  C  M  Y  S  S  I  E  R  R  I  H  Q  R  R  P  D  K  A  Y  L  T  K  V  L  F  H  A  *  S  S  T  K  W  *  D  R  S  S  T  N  S  F  K  *  *  S  C  *  F  I  H  *  G  I  A  N  I  N  I  *  E  V  E  I  Q  D  W  N  A  P  S  P  R  Y  Q  V  K  F  S  S  G  G  A  K  Y  A  L  Y  S  F  P  *  L  W  F  C  P  K  L  G  F  P  G  K  V  F  N </second_frame>
            <third_frame>   I  M  Q  Q  D  E  D  F  E  P  K  S  V  H  E  C  R  Q  R  N  D  W  P  K  W  K  D  A  I  Q  A  E  L  A  S  L  E  K  R  E  V  F  *  P  I  I  R  T  P  E  G  I  K  P  V  G  Y  K  *  V  F  V  *  K  R  N  E  K  G  E  V  M  R  Y  K  S  R  L  V  A  Q  G  F  S  Q  R  P  G  I  D  Y  M  E  T  Y  S  L  V  V  D  A  I  T  F  R  Y  L  I  N  L  A  V  H  E  K  L  E  M  R  L  M  D  V  V  T  A  Y  L  Y  G  S  L  D  H  N  I  F  M  K  I  P  E  A  F  K  V  P  E  T  Y  K  D  S  R  E  T  C  S  I  K  L  Q  K  S  L  Y  G  L  K  Q  S  G  R  M  W  Y  N  R  L  S  E  Y  L  L  K  K  G  Y  K  N  D  P  I  C  P  C  I  F  I  K  R  L  G  S  E  F  V  I  I  A  V  Y  V  D  D  L  N  I  I  G  T  R  K  E  L  L  E  A  V  E  F  L  K  R  E  F  E  M  K  D  L  G  K  T  K  F  C  L  G  L  Q  I  E  N  L  S  N  G  I  L  V  H  Q  S  T  Y  T  E  K  I  L  K  R  F  Y  M  D  N  S  H  P  L  S  T  P  M  V  V  R  S  L  D  I  N  T  D  P  F  R  P  Q  E  N  D  E  *  L  L  G  D  E  T  P  Y  L  S  A  I  G  A  L  M  Y  L  A  N  N  T  R  P  D  I  C  F  A  V  S  L  L  A  R  F  S  S  S  P  T  K  R  H  W  N  G  V  K  H  I  L  R  Y  L  R  G  T  M  D  M  G  L  F  Y  S  N  E  S  K  S  E  L  I  G  Y  A  D  A  G  Y  L  S  D  P  H  K  A  R  S  Q  T  G  Y  L  F  T  C  G  D  T  A  I  S  W  R  S  M  K  Q  T  L  V  A  T  S  S  N  H  A  K  I  I  A  I  H  E  A  S  R  E  C  V  W  L  R  *  M  T  H  H  I  Q  K  M  C  G  F  S  L  K  K  N  I  P  T  T  M  Y  E  D  N  A  A  C  I  A  Q  L  K  G  G  Y  I  K  G  D  R  T  K  H  I  S  P  K  F  F  F  T  H  D  L  Q  Q  N  G  E  I  E  V  Q  Q  I  R  S  S  D  N  L  A  D  L  F  T  K  A  L  P  T  S  T  F  E  K  L  R  Y  K  I  G  M  R  R  L  R  D  I  K  *  S  F  H  Q  G  E  R  N  T  R  C  T  L  F  L  N  Y  G  F  V  P  S  *  V  F  L  V  R  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0115G22.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134148" stop="134876"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRNEKGEVMRYKSRLVAQGFSQRPGIDYMETYSLVVDAITFRYLINLAVHEKLEMRLMDVVTAYLYGSLDHNIFMKIPEAFKVPETYKDSRETCSIKLQKSLYGLKQSGRMWYNRLSEYLLKKGYKNDPICPCIFIKRLGSEFVIIAVYVDDLNIIGTRKELLEAVEFLKREFEMKDLGKTKFCLGLQIENLSNGILVHQSTYTEKILKRFYMDNSHPLSTPMVVRSLDINTDPFRPQENDE*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0115G22.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134877" stop="135287"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>408</number_coding_nucleotides>
                  <number_encoded_amino_acids>136</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLGDETPYLSAIGALMYLANNTRPDICFAVSLLARFSSSPTKRHWNGVKHILRYLRGTMDMGLFYSNESKSELIGYADAGYLSDPHKARSQTGYLFTCGDTAISWRSMKQTLVATSSNHAKIIAIHEASRECVWLR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0115G22.1" strand="+"/>
                <serials PGL_serial="21" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="135288" stop="135593"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MTHHIQKMCGFSLKKNIPTTMYEDNAACIAQLKGGYIKGDRTKHISPKFFFTHDLQQNGEIEVQQIRSSDNLADLFTKALPTSTFEKLRYKIGMRRLRDIK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="137068" PGL_stop="136470"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="137068" e_stop="136470"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="137068" e_stop="136470" e_length="599"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137068" stop="136470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E550240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137049" stop="136496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E389671" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATTCTAAAAAAGAACTATAAATACAAAACAAACTAATAGAAAATTGTTCGCGATCTTCGTCGTCTTTTTCAAGATCCTCACGAGTAGACAAAGATTTTATATTTGCGTTTCTGAATTTGAGGAAGGTTTGCACACCAATGAGTCTTATAAATGTTCTTACCCTCTTTCTTCCTTCATTTTAGCAGCGGATCATACATTATACACTATTTGTTAAGTAATAAATAAATTAAAGGATGAAAAATCACCAGAAATTGGTTGATTAAGATGAATACCTCTAGTAAGCCTCTTGGATTCAGCCATTGGAGAGTAAATCATAACGGAAATTGAAAAATACAAACAACATTTTTTTAAGATTTAAACAAAAATAAAATTAGAAAAGAAATCTGAAAATTGGATAAAGATTAGAGATACCTTAATCAAAGGGATTCTTGTTGATTCAATTTTGGATTAAAAAAACAACCAAAATATATGGCAAAAAAATATTTGCAACTTGAATGTTGGAGGAAAATCAGAAAAGATAACCATAAGAGAGAAAAAAAATTAAATGGGAGAGAGAATTAACAAATTGAAAATATAAATATGAGAGAGAATAATTTT</gDNA_template>
            <first_frame> K  F  *  K  R  T  I  N  T  K  Q  T  N  R  K  L  F  A  I  F  V  V  F  F  K  I  L  T  S  R  Q  R  F  Y  I  C  V  S  E  F  E  E  G  L  H  T  N  E  S  Y  K  C  S  Y  P  L  S  S  F  I  L  A  A  D  H  T  L  Y  T  I  C  *  V  I  N  K  L  K  D  E  K  S  P  E  I  G  *  L  R  *  I  P  L  V  S  L  L  D  S  A  I  G  E  *  I  I  T  E  I  E  K  Y  K  Q  H  F  F  K  I  *  T  K  I  K  L  E  K  K  S  E  N  W  I  K  I  R  D  T  L  I  K  G  I  L  V  D  S  I  L  D  *  K  N  N  Q  N  I  W  Q  K  N  I  C  N  L  N  V  G  G  K  S  E  K  I  T  I  R  E  K  K  N  *  M  G  E  R  I  N  K  L  K  I  *  I  *  E  R  I  I   </first_frame>
            <second_frame>  N  S  K  K  E  L  *  I  Q  N  K  L  I  E  N  C  S  R  S  S  S  S  F  S  R  S  S  R  V  D  K  D  F  I  F  A  F  L  N  L  R  K  V  C  T  P  M  S  L  I  N  V  L  T  L  F  L  P  S  F  *  Q  R  I  I  H  Y  T  L  F  V  K  *  *  I  N  *  R  M  K  N  H  Q  K  L  V  D  *  D  E  Y  L  *  *  A  S  W  I  Q  P  L  E  S  K  S  *  R  K  L  K  N  T  N  N  I  F  L  R  F  K  Q  K  *  N  *  K  R  N  L  K  I  G  *  R  L  E  I  P  *  S  K  G  F  L  L  I  Q  F  W  I  K  K  T  T  K  I  Y  G  K  K  I  F  A  T  *  M  L  E  E  N  Q  K  R  *  P  *  E  R  K  K  I  K  W  E  R  E  L  T  N  *  K  Y  K  Y  E  R  E  *  F  </second_frame>
            <third_frame>   I  L  K  K  N  Y  K  Y  K  T  N  *  *  K  I  V  R  D  L  R  R  L  F  Q  D  P  H  E  *  T  K  I  L  Y  L  R  F  *  I  *  G  R  F  A  H  Q  *  V  L  *  M  F  L  P  S  F  F  L  H  F  S  S  G  S  Y  I  I  H  Y  L  L  S  N  K  *  I  K  G  *  K  I  T  R  N  W  L  I  K  M  N  T  S  S  K  P  L  G  F  S  H  W  R  V  N  H  N  G  N  *  K  I  Q  T  T  F  F  *  D  L  N  K  N  K  I  R  K  E  I  *  K  L  D  K  D  *  R  Y  L  N  Q  R  D  S  C  *  F  N  F  G  L  K  K  Q  P  K  Y  M  A  K  K  Y  L  Q  L  E  C  W  R  K  I  R  K  D  N  H  K  R  E  K  K  L  N  G  R  E  N  *  Q  I  E  N  I  N  M  R  E  N  N  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0115G22.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="137059" stop="136853"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KRTINTKQTNRKLFAIFVVFFKILTSRQRFYICVSEFEEGLHTNESYKCSYPLSSFILAADHTLYTIC*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 707 chains have been computed
$ 
$ memory statistics:
$ 1214800 bytes spliced alignments in total
$ 554 spliced alignments have been stored
$ 2192 bytes was the average size of a spliced alignment
$ 51720 bytes predicted gene locations in total
$ 22 predicted gene locations have been stored
$ 2350 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 789 backtrace matrices have been allocated
$ 
$ date finished: 2008-02-20 12:54:18
-->
