<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2007-12-12 23:06:12"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E245642" ref_strand="+" ref_description="SGN-E245642 	[cLEF-43-D12]">
      <seq>ttgagtgactctcatcatctttctagtaatctactattgttctctacattacaagaataacatccccatccacttcctctcttctcaacacacacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcangaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9602" stop="11601"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9902" g_stop="10045" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="398" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="516" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11301" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="517" r_stop="605" r_length="89" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E245642" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9902" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGTGACTCTCATCATCTTTCTAGTAATCTACTATTGTTCTCTACATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGT</genome_strand>
        <mrna_strand>TTGAGTGACTCTCATCATCTTTCTAGTAATCTACTATTGTTCTCTACATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCANGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E261043" ref_strand="+" ref_description="SGN-E261043 	[cLEG-55-P15]">
      <seq>tttctagtaatctactattgttctctacattacaagaataacatccccatccacttcctctcttctcaacacacacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaatcccatctagcttctattnatagtagtatataatattctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9621" stop="12716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9921" g_stop="10045" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="379" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="497" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="680" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12416" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="827" r_length="147" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E261043" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>827</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261043" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9921" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTAGTAATCTACTATTGTTCTCTACATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGG-AAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTT</genome_strand>
        <mrna_strand>TTTCTAGTAATCTACTATTGTTCTCTACATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAG-AATCCCATCTAGCTTCTATTNATAGTAGTATATAATATTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E333806" ref_strand="+" ref_description="SGN-E333806 	[cTOD-22-F22]">
      <seq>tttctagtaatctactattgttctctacattacaagaataacatccccatccacttcctctcttctcaacacacacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9621" stop="12628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9921" g_stop="10045" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="379" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="497" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="680" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12328" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="681" r_stop="739" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E333806" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>739</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9921" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCTAGTAATCTACTATTGTTCTCTACATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGT</genome_strand>
        <mrna_strand>TTTCTAGTAATCTACTATTGTTCTCTACATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E297511" ref_strand="+" ref_description="SGN-E297511 	[cLET-28-B3]">
      <seq>taatctactattgttctctacattacaagaataacatccccatccacttcctctcttctcaacacacacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtggctgaatggctcaaaactcatgcacctggaactcgaaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9628" stop="11424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9928" g_stop="10045" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="118" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="372" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11124" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="473" r_length="101" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E297511" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297511" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9928" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATCTACTATTGTTCTCTACATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCC</genome_strand>
        <mrna_strand>TAATCTACTATTGTTCTCTACATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGGCTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E341858" ref_strand="+" ref_description="SGN-E341858 	[cTOF-9-B24]">
      <seq>ttgttctctacattacaagaataacatccccatccacttcctctcttctaacacacacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtgggtgtttgttccatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9638" stop="12627"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9938" g_stop="10045" g_length="108"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="107" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="361" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="479" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="480" r_stop="662" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12327" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="663" r_stop="721" r_length="59" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E341858" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>721</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9938" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12327"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTCTCTACATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGT-GGTGTTTGTTCCATGGG</genome_strand>
        <mrna_strand>TTGTTCTCTACATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCT-AACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGGTGTTTGTTCCATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E279054" ref_strand="+" ref_description="SGN-E279054 	[cLEL-4-K13]">
      <seq>gcacgagcaagaataacatccccatccacttcctctcttctcaacacgcacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9648" stop="10749"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9947" g_stop="10045" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10449" g_length="248"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="348" r_length="248" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E279054" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>347</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279054" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9947" e_stop="10045"/>
          <exon e_start="10202" e_stop="10449"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATTA-CAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACC</genome_strand>
        <mrna_strand>GCACGAGCAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACGCACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E553924" ref_strand="+" ref_description="SGN-E553924 	[cTSC-2-K21]">
      <seq>cattacaagaataacatccccatccacttcctctcttctcaacacacacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattnatagtagtatataatattctcttgtaccattgttacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9648" stop="12731"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9948" g_stop="10045" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="98" r_length="98" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="99" r_stop="352" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="470" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="471" r_stop="653" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12431" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="654" r_stop="815" r_length="162" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E553924" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>815</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E553924" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9948" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACAT</genome_strand>
        <mrna_strand>CATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTNATAGTAGTATATAATATTCTCTTGTACCATTGTTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E211792" ref_strand="+" ref_description="SGN-E211792 	[cLEC-66-D11]">
      <seq>gaataacatccccatccacttcctctcttctcaacacacacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9656" stop="11598"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9956" g_stop="10045" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="344" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="462" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11298" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="463" r_stop="548" r_length="86" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E211792" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E211792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9956" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11298"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGT</genome_strand>
        <mrna_strand>GAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E554238" ref_strand="+" ref_description="SGN-E554238 	[cTSC-3-K21]">
      <seq>aataacatccccatccacattcctctcttctcaacacacacattaattaacatgtgcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgcatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9657" stop="10738"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9957" g_stop="10045" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.955"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.96"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10438" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="328" r_length="237" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E554238" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>326</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E554238" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9957" e_stop="10045"/>
          <exon e_start="10202" e_stop="10438"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAACATCCCCATCCAC-TTCCTCTCTTCTCAACACACACATTAATTAACATG-GCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACT</genome_strand>
        <mrna_strand>AATAACATCCCCATCCACATTCCTCTCTTCTCAACACACACATTAATTAACATGTGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGCATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E390593" ref_strand="+" ref_description="SGN-E390593 	[TUS-47-A12]">
      <seq>tccccatccacttcctctcttctcaacacacacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgggaaaaaccatggaacactcacgacctatgataac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9664" stop="11569"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9964" g_stop="10045" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="336" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="454" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11269" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="511" r_length="57" r_score="0.877"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E390593" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E390593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9964" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11269"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATC</genome_strand>
        <mrna_strand>TCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGGGAAAAACCATGGAACACTCACGACCTATGATAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E283072" ref_strand="+" ref_description="SGN-E283072 	[cLER-17-J12]">
      <seq>ccccatccacttcctctcttctcaacacacacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9665" stop="11430"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9965" g_stop="10045" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="335" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11130" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="442" r_length="107" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E283072" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283072" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9965" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11130"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACAC</genome_strand>
        <mrna_strand>CCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E342261" ref_strand="+" ref_description="SGN-E342261 	[cTOF-8-K23]">
      <seq>ccatccacttcctctcttctcaacacacacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtgggatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaagaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9667" stop="12602"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9967" g_stop="10045" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="333" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="451" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="633" r_length="182" r_score="0.989"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12302" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="666" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E342261" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342261" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9967" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGAT</genome_strand>
        <mrna_strand>CCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGGATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAA-GAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E324451" ref_strand="+" ref_description="SGN-E324451 	[cTOC-6-O15]">
      <seq>ccatccacttcctctcttctcaacacacacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9667" stop="11665"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9967" g_stop="10045" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="333" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="334" r_stop="451" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11365" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="452" r_stop="604" r_length="153" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E324451" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E324451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9967" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11365"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAA</genome_strand>
        <mrna_strand>CCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E340571" ref_strand="+" ref_description="SGN-E340571 	[cTOF-1-E3]">
      <seq>ccactttctctcttctcaacacacacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9671" stop="11651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9971" g_stop="10045" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="329" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="447" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11351" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="448" r_stop="586" r_length="139" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E340571" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>586</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9971" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTC</genome_strand>
        <mrna_strand>CCACTTTCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E216952" ref_strand="+" ref_description="SGN-E216952 	[cLEL-1-K3]">
      <seq>tgcttcctctcttctcaacacacacattaattaacatggcttctttcactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataatacgaggatgaaagtgaaatgtatggcagctagcattccagctgatgatagagtgcctgatatggtgaaaaggaatcctatgaatttgcttttattgggtgcacttgcttcaccaactggtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9674" stop="10715"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9972" g_stop="10045" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.98"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10415" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="288" r_length="214" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E216952" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>288</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E216952" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9972" e_stop="10045"/>
          <exon e_start="10202" e_stop="10415"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTG</genome_strand>
        <mrna_strand>TGCTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTTCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATACGAGGATGAAAGTGAAATGTATGGCAGCTAGCATTCCAGCTGATGATAGAGTGCCTGATATGGTGAAAAGGAATCCTATGAATTTGCTTTTATTGGGTGCACTTGCTTCACCAACTGGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E299038" ref_strand="+" ref_description="SGN-E299038 	[cLET-42-J16]">
      <seq>tcctctcttctcaacacacacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9676" stop="11672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9976" g_stop="10045" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="324" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="442" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11372" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="443" r_stop="602" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E299038" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>602</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299038" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9976" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAG</genome_strand>
        <mrna_strand>TCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E321013" ref_strand="+" ref_description="SGN-E321013 	[cTOB-13-L9]">
      <seq>ctctcttctcaaccacacacattaattaacatggcttcttccacctctttctcatgtaacctccttctcagctatgctcaagccaaaagtggtatttcatcggtttcaccaagcccttgcttgtgaagccgatgaagaattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttatttgggtgccaccttgctttacccaacctggtggaatgcttgtacccttatgctactttctttgcacctcctggctcaagaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcccctggaactcgaaccctcacaccaaggactaaagggagatcctacttaccttgttgtggagaacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9678" stop="11544"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9978" g_stop="10045" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="0.912"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.92"/>
            <acceptor a_prob="0.950" a_score="0.87"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="335" r_length="264" r_score="0.921"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="0.92"/>
            <acceptor a_prob="0.338" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="454" r_length="119" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.905" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11244" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="486" r_length="32" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E321013" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="0.971" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321013" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9978" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11244"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTCTTCTCAA-CACACACATTAATTAACATGGCTTCTTCCA-CTCTTTCTCATGTAA-CTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAG-CAAAAGTGGTATTTCATCGGTTTCA-CAAG-CCTTGCTTGTGAAGCCGATGAAG-ATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTA-TTGGGTG-CA-CTTGCTTTA-CCAA-CTGGTGGAATGCTTGTA-CCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACA-CAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGA</genome_strand>
        <mrna_strand>CTCTCTTCTCAACCACACACATTAATTAACATGGCTTCTTCCACCTCTTTCTCATGTAACCTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCCAAAAGTGGTATTTCATCGGTTTCACCAAGCCCTTGCTTGTGAAGCCGATGAAGAATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTTGGGTGCCACCTTGCTTTACCCAACCTGGTGGAATGCTTGTACCCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCCCCTGGAACTCGAACCCTCACACCAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E347825" ref_strand="+" ref_description="SGN-E347825 	[cTOF-26-H6]">
      <seq>tctcttctcacacacacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaaagtgntagaggacctgctcctttatccttggcattggctcatgcagnacgtgatgatgggaaagtggtgtttgttccatgggttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9679" stop="12632"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9979" g_stop="10045" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="320" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="438" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="621" r_length="183" r_score="0.984"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12332" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="622" r_stop="684" r_length="63" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E347825" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>685</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9979" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12332"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAA</genome_strand>
        <mrna_strand>TCTCTTCTC-ACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAAGTGNTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGNACGTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E348944" ref_strand="+" ref_description="SGN-E348944 	[cTOF-29-I2]">
      <seq>tctcttctcacacacacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaagaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9679" stop="11444"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9979" g_stop="10045" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="66" r_length="66" r_score="0.985"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="67" r_stop="320" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="438" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11225" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="451" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E348944" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348944" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9979" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11225"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTT</genome_strand>
        <mrna_strand>TCTCTTCTC-ACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E329545" ref_strand="+" ref_description="SGN-E329545 	[cTOD-11-A18]">
      <seq>caacacacacattaattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcangaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9687" stop="11618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9987" g_stop="10045" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="59" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="60" r_stop="313" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="431" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11318" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="432" r_stop="537" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E329545" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329545" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9987" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTG</genome_strand>
        <mrna_strand>CAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCANGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E314101" ref_strand="+" ref_description="SGN-E314101 	[cTOA-19-B14]">
      <seq>attaattaacatggcttcttccactctttctcatggaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9697" stop="11618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="9997" g_stop="10045" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="49" r_length="49" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.98"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="50" r_stop="303" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="421" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11318" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="527" r_length="106" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E314101" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="9997" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11318"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTG</genome_strand>
        <mrna_strand>ATTAATTAACATGGCTTCTTCCACTCTTTCTCATGGAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E295462" ref_strand="+" ref_description="SGN-E295462 	[cLET-23-P8]">
      <seq>gatcccccgggctgcaggattaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcangaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9701" stop="11575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10001" g_stop="10045" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="63" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="317" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="435" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11275" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="436" r_stop="498" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E295462" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E295462" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10001" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCT</genome_strand>
        <mrna_strand>ATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCANGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E321569" ref_strand="+" ref_description="SGN-E321569 	[cTOB-25-K21]">
      <seq>ttaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatggggaaagtggtgtttgttccatgggttngaacagacttcagaactggtgatgctccatggtgggcttagaatcccatctagcttctattattagtagtatataatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9702" stop="12711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10002" g_stop="10045" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="298" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="416" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="599" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12411" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="741" r_length="142" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E321569" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321569" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10002" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGAT-GGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATT</genome_strand>
        <mrna_strand>TTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGGAAAGTGGTGTTTGTTCCATGGGTTNGAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAG-AATCCCATCTAGCTTCTATTATTAGTAGTATATAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E322140" ref_strand="+" ref_description="SGN-E322140 	[cTOB-24-A22]">
      <seq>ttaacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaatcccatctagcttctattattagtagatataatatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9702" stop="12711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10002" g_stop="10045" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="44" r_length="44" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="45" r_stop="298" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="416" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="417" r_stop="599" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12411" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="600" r_stop="739" r_length="140" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E322140" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>741</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E322140" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10002" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12411"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATT</genome_strand>
        <mrna_strand>TTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAG-AATCCCATCTAGCTTCTATTATTAGTAG-ATATAATATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E278810" ref_strand="+" ref_description="SGN-E278810 	[cLER-2-J5]">
      <seq>taacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9703" stop="11592"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10003" g_stop="10045" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="297" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="415" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11292" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="495" r_length="80" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E278810" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10003" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11292"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGG</genome_strand>
        <mrna_strand>TAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E299266" ref_strand="+" ref_description="SGN-E299266 	[cLET-43-M12]">
      <seq>taacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcatgaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9703" stop="11591"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10003" g_stop="10045" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="297" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="415" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11291" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="494" r_length="79" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E299266" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299266" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10003" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11291"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTG</genome_strand>
        <mrna_strand>TAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E282552" ref_strand="+" ref_description="SGN-E282552 	[cLER-18-L5]">
      <seq>taacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaagtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9703" stop="11586"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10003" g_stop="10045" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="297" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="415" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11286" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="489" r_length="74" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E282552" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>489</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282552" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10003" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11286"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCA</genome_strand>
        <mrna_strand>TAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAAGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E291260" ref_strand="+" ref_description="SGN-E291260 	[cLET-2-L14]">
      <seq>taacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactgggggaatgcttgtaccttatgctactttctttgcacctcctggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9703" stop="10757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10003" g_stop="10045" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="43" r_length="43" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="44" r_stop="297" r_length="254" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E291260" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>297</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10003" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG</genome_strand>
        <mrna_strand>TAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGGGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E282834" ref_strand="+" ref_description="SGN-E282834 	[cLER-15-M24]">
      <seq>aacatggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9704" stop="11531"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10004" g_stop="10045" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="1.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="296" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="297" r_stop="414" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11231" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="433" r_length="19" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E282834" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282834" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10004" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11231"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTG</genome_strand>
        <mrna_strand>AACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E283686" ref_strand="+" ref_description="SGN-E283686 	[cLES-1-P12]">
      <seq>ggcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9709" stop="10747"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10009" g_stop="10045" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10447" g_length="246"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="283" r_length="246" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E283686" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>283</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283686" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10009" e_stop="10045"/>
          <exon e_start="10202" e_stop="10447"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCA</genome_strand>
        <mrna_strand>GGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E294989" ref_strand="+" ref_description="SGN-E294989 	[cLET-17-H20]">
      <seq>gcttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9710" stop="11674"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10010" g_stop="10045" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="290" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="291" r_stop="408" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11374" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="570" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E294989" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>570</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10010" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11374"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTT</genome_strand>
        <mrna_strand>GCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E344831" ref_strand="+" ref_description="SGN-E344831 	[cTOF-21-G8]">
      <seq>cttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9711" stop="12607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10011" g_stop="10045" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="289" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="407" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="589" r_length="182" r_score="0.995"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12307" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="590" r_stop="627" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E344831" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344831" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10011" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAA</genome_strand>
        <mrna_strand>CTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGG-AAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E245446" ref_strand="+" ref_description="SGN-E245446 	[cLEF-43-C9]">
      <seq>ttcttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9712" stop="11660"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10012" g_stop="10045" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="288" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="406" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11360" g_length="148"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="554" r_length="148" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E245446" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>554</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10012" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11360"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACA</genome_strand>
        <mrna_strand>TTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E253876" ref_strand="+" ref_description="SGN-E253876 	[cLEG-28-N10]">
      <seq>ttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9715" stop="12609"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10015" g_stop="10045" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="285" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="403" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="586" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12309" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="626" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E253876" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>626</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253876" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10015" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12309"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAG</genome_strand>
        <mrna_strand>TTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E288213" ref_strand="+" ref_description="SGN-E288213 	[cLES-7-L10]">
      <seq>ttccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9715" stop="12608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10015" g_stop="10045" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="285" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="403" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="404" r_stop="586" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12308" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="625" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E288213" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E288213" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10015" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAA</genome_strand>
        <mrna_strand>TTCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E291301" ref_strand="+" ref_description="SGN-E291301 	[cLET-2-M1]">
      <seq>tccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgcgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9716" stop="11651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10016" g_stop="10045" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="284" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="402" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11351" g_length="139"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="541" r_length="139" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E291301" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291301" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10016" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTC</genome_strand>
        <mrna_strand>TCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGCGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E283418" ref_strand="+" ref_description="SGN-E283418 	[cLER-12-B9]">
      <seq>tccactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9716" stop="11545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10016" g_stop="10045" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="284" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="402" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11245" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="435" r_length="33" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E283418" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>435</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283418" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10016" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGAT</genome_strand>
        <mrna_strand>TCCACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E277579" ref_strand="+" ref_description="SGN-E277579 	[cLER-6-I8]">
      <seq>cactctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9718" stop="11419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10018" g_stop="10045" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="282" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11119" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="378" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E277579" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E277579" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10018" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCG</genome_strand>
        <mrna_strand>CACTCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E318611" ref_strand="+" ref_description="SGN-E318611 	[cTOB-9-D17]">
      <seq>gaggtctcatgtaacctccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaagaggcggtagtggtggtacccctgccaaagatgctaatggcaatgatgttggtgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgcgtgcactcaccttggttgtgtcctgccgaggaatactgctgagaacaagttcatttgccctcgccatggatctcaatacaacactcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9895" stop="11695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10021" g_stop="10045" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="26" r_length="26" r_score="0.760"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="27" r_stop="280" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="281" r_stop="398" r_length="118" r_score="0.975"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="581" r_length="183" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E318611" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E318611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10021" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCTCATGTAAC-TCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA</genome_strand>
        <mrna_strand>GAGGTCTCATGTAACCTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAGAGGCGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGGTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGCGTGCACTCACCTTGGTTGTGTCCTGCCGAGGAATACTGCTGAGAACAAGTTCATTTGCCCTCGCCATGGATCTCAATACAACACTCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E321189" ref_strand="+" ref_description="SGN-E321189 	[cTOB-13-D20]">
      <seq>tctttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcangaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9882" stop="11672"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10021" g_stop="10045" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="279" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="397" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11372" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="398" r_stop="557" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E321189" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E321189" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10021" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11372"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAG</genome_strand>
        <mrna_strand>TCTTTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCANGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E282000" ref_strand="+" ref_description="SGN-E282000 	[cLES-2-B5]">
      <seq>ttctcatgtaactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9882" stop="11575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10024" g_stop="10045" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="276" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="277" r_stop="394" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11275" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="457" r_length="63" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E282000" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282000" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10024" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCATGTAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCT</genome_strand>
        <mrna_strand>TTCTCATGTAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E340572" ref_strand="+" ref_description="SGN-E340572 	[cTOF-1-E5]">
      <seq>taactccttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9889" stop="10706"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10032" g_stop="10045" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10406" g_length="205"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="219" r_length="205" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E340572" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>219</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340572" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10032" e_stop="10045"/>
          <exon e_start="10202" e_stop="10406"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTAC</genome_strand>
        <mrna_strand>TAACTCCTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E297532" ref_strand="+" ref_description="SGN-E297532 	[cLET-28-H16]">
      <seq>actccttctcagctatgctggagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaagaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgcgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgcggagaacgatggaacactcgcgacctatggtatcaatgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9890" stop="11575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10034" g_stop="10045" g_length="12"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="12" r_length="12" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="266" r_length="254" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="384" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11275" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="447" r_length="63" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E297532" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>447</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297532" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10034" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTCCTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCT</genome_strand>
        <mrna_strand>ACTCCTTCTCAG............................................................................................................................................................CTATGCTGGAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGCGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGCGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E347873" ref_strand="+" ref_description="SGN-E347873 	[cTOF-31-M15]">
      <seq>cttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9895" stop="12688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10038" g_stop="10045" g_length="8"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="8" r_length="8" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="9" r_stop="262" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="380" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="381" r_stop="563" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12388" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="564" r_stop="682" r_length="119" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E347873" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>682</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347873" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10038" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTC</genome_strand>
        <mrna_strand>CTTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E329281" ref_strand="+" ref_description="SGN-E329281 	[cTOD-2-E11]">
      <seq>ttctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9896" stop="12605"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10039" g_stop="10045" g_length="7"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="7" r_length="7" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="8" r_stop="261" r_length="254" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="379" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="562" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="12270" g_stop="12305" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="563" r_stop="598" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E329281" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>598</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329281" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10039" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12305"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGG</genome_strand>
        <mrna_strand>TTCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E289356" ref_strand="+" ref_description="SGN-E289356 	[cLES-18-N2]">
      <seq>tctcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggccatggcatgggaaaggataataagaggatgaacgtgaaatgtatggcctctagtattccagcatatgatatagtgcctgatatggagaaaacgaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactatatttgcacctcctggctcaagaggtggtagtggcggtacccctgccaaagatgctaacggcaatgatgttgtcgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9896" stop="11553"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10040" g_stop="10045" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156">
            <donor d_prob="0.684" d_score="0.00"/>
            <acceptor a_prob="0.950" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="260" r_length="254" r_score="0.961"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.338" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="378" r_length="118" r_score="0.966"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="11213" g_stop="11253" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="419" r_length="41" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E289356" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289356" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10040" e_stop="10045"/>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11253"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCAGGTAATGCGCGGAGCTAGTTAGGCTAACATCCATCGAAAAATTATACTGTATATATAAATCTTATTAAAAATTATTTGTTATATGTATATATATATAGTTTTTAATGAAAATTCTGACTCAACTACTACTGTAACAGTTTTTTGTTATAATTTTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACT</genome_strand>
        <mrna_strand>TCTCAG............................................................................................................................................................CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGCCATGGCATGGGAAAGGATAATAAGAGGATGAACGTGAAATGTATGGCCTCTAGTATTCCAGCATATGATATAGTGCCTGATATGGAGAAAACGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTATATTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAGAGGTGGTAGTGGCGGTACCCCTGCCAAAGATGCTAACGGCAATGATGTTGTCGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E229223" ref_strand="+" ref_description="SGN-E229223 	[cLEL-29-C10]">
      <seq>tcagctatgctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtatgtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctactaccttgttgtggagaacgatggaacactcgcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9898" stop="11557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10198" g_stop="10455" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="377" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11213" g_stop="11257" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="421" r_length="44" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E229223" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E229223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10198" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11257"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTA-GTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCG</genome_strand>
        <mrna_strand>TCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTATGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTAC-TACCTTGTTGTGGAGAACGATGGAACACTCGCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E323896" ref_strand="+" ref_description="SGN-E323896 	[cTOC-3-C17]">
      <seq>tcagctatgttcaagcaaaagtggtatttcatcgggttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9898" stop="11416"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10198" g_stop="10455" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11024" g_stop="11116" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="351" r_length="93" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E323896" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>351</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E323896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10198" e_stop="10455"/>
          <exon e_start="11024" e_stop="11116"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAAC</genome_strand>
        <mrna_strand>TCAGCTATGTTCAAGCAAAAGTGGTATTTCATCGGGTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E344790" ref_strand="+" ref_description="SGN-E344790 	[cTOF-21-H8]">
      <seq>cccatcttttcattataaattatgatttagtttcctgctgctcaaacaaaagtggaatttcatcggtttcacaaagccttgcttgagaaaccgatgaaaattaatggtcatggaatgggaaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttggaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgagtcaagccgcggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgtttatgatgggaaagtggtgtttgttccatgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9905" stop="12626"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10202" g_stop="10455" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="291" r_length="256" r_score="0.949"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="292" r_stop="409" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="592" r_length="183" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12270" g_stop="12326" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="593" r_stop="649" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E344790" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="0.943" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E344790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10202" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12326"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCAC-AAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGG-AAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGG</genome_strand>
        <mrna_strand>TGCTGCTCAAACAAAAGTGGAATTTCATCGGTTTCACAAAGCCTTGCTTGAGAAACCGATGAAAATTAATGGTCATGGAATGGGAAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGGACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGAGTCAAGCCGCGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTTATGATGGGAAAGTGGTGTTTGTTCCATGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E378188" ref_strand="+" ref_description="SGN-E378188 	[TUS-33-A5]">
      <seq>gctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagttctttttgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9906" stop="12829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10206" g_stop="10455" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="368" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="551" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12270" g_stop="12529" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="812" r_length="261" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E378188" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>811</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E378188" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10206" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12529"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGT</genome_strand>
        <mrna_strand>GCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E373996" ref_strand="+" ref_description="SGN-E373996 	[TUS-33-A5]">
      <seq>gctcaagcaaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9906" stop="12682"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10206" g_stop="10455" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="250" r_length="250" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="368" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="551" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12270" g_stop="12382" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="552" r_stop="664" r_length="113" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E373996" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373996" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10206" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12382"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCT</genome_strand>
        <mrna_strand>GCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E290755" ref_strand="+" ref_description="SGN-E290755 	[cLET-10-L13]">
      <seq>caaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9913" stop="11695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10213" g_stop="10455" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="361" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="544" r_length="183" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E290755" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>544</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10213" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA</genome_strand>
        <mrna_strand>CAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E289599" ref_strand="+" ref_description="SGN-E289599 	[cLET-4-K17]">
      <seq>aaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtttcaatgctgtgtgcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9914" stop="11584"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10214" g_stop="10455" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="360" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11213" g_stop="11284" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="432" r_length="72" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E289599" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10214" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11284"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACT</genome_strand>
        <mrna_strand>AAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTTTCAATGCTGTGTGCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E294423" ref_strand="+" ref_description="SGN-E294423 	[cLET-14-K2]">
      <seq>aaaagtggtatttcatcggtttcacaagccttgcttgtgaagccgatgaacattaatggtcatggaatgcgaaaggataataacacgatgaaagcgaaatgtatggcagctagtattccagcatatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggcggaatgcttgaaccttatgctactttctttgcacctcctggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9914" stop="10757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10214" g_stop="10455" g_length="242"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="242" r_length="242" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E294423" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>242</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294423" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10214" e_stop="10455"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG</genome_strand>
        <mrna_strand>AAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAACATTAATGGTCATGGAATGCGAAAGGATAATAACACGATGAAAGCGAAATGTATGGCAGCTAGTATTCCAGCATATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGCGGAATGCTTGAACCTTATGCTACTTTCTTTGCACCTCCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E319154" ref_strand="+" ref_description="SGN-E319154 	[cTOB-16-C24]">
      <seq>tcggtttcacaagccttgcttgtgaagccgacgaagattaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggacaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgcaccttatgctactttctttgcacctactggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgcggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9929" stop="11594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10229" g_stop="10455" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.982"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="345" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11213" g_stop="11294" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="427" r_length="82" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E319154" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E319154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10229" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11294"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTT</genome_strand>
        <mrna_strand>TCGGTTTCACAAGCCTTGCTTGTGAAGCCGACGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGACAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGCACCTTATGCTACTTTCTTTGCACCTACTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGCGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E373995" ref_strand="-" ref_description="SGN-E373995 	[TUS-33-A5]">
      <seq>ttaatggtcatggaatgggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagttctttttgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9966" stop="12831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10266" g_stop="10455" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="190" r_length="190" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="191" r_stop="308" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="309" r_stop="491" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12270" g_stop="12530" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="753" r_length="262" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E373995" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>752</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373995" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="10266" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12530"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTA</genome_strand>
        <mrna_strand>TTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E539027" ref_strand="-" ref_description="SGN-E539027 	[TUS-58-J6]">
      <seq>attgaaaagtataatacgaggatgaaagtgaaatgtatgccagctagtattccagcagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacacctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagttctttttgtaattgtttattatcatttcatttttattttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9980" stop="12865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10280" g_stop="10455" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="176" r_length="176" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="294" r_length="118" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="477" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12270" g_stop="12569" g_length="300"/>
          <reference_exon_boundary r_type="cDNA" r_start="478" r_stop="778" r_length="301" r_score="0.973"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E539027" ref_strand="-">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>777</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539027" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="10280" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12569"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGG</genome_strand>
        <mrna_strand>ATTGAAAAGTATAATACGAGGATGAAAGTGAAATGTATGCCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACACCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E342655" ref_strand="+" ref_description="SGN-E342655 	[cTOF-7-J5]">
      <seq>ggaaaggataataagaggatgaaagtgaaatgtatggcagctagtattccagcagatgatagaagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="9983" stop="12716"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10283" g_stop="10455" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="174" r_length="174" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="292" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="475" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12270" g_stop="12416" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="622" r_length="147" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E342655" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>621</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342655" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10283" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12416"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAG-AGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTT</genome_strand>
        <mrna_strand>GGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E281067" ref_strand="+" ref_description="SGN-E281067 	[cLER-7-C17]">
      <seq>cagatgatagagtgcctgatatggagaaaaggaatcttatgaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="10035" stop="12607"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10335" g_stop="10455" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="239" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="422" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12270" g_stop="12307" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="460" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E281067" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>460</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281067" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10335" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAA</genome_strand>
        <mrna_strand>CAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E298338" ref_strand="+" ref_description="SGN-E298338 	[cLET-41-M12]">
      <seq>aaagggaatcttatgaattggcttttatggggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="10062" stop="12606"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10361" g_stop="10455" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="213" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="214" r_stop="396" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12270" g_stop="12306" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="397" r_stop="433" r_length="37" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E298338" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10361" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12306"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGA</genome_strand>
        <mrna_strand>AAAGGGAATCTTATGAATTGGCTTTTATGGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E373242" ref_strand="-" ref_description="SGN-E373242 	[TUS-31-F13]">
      <seq>gaatttgcttttattgggtgcacttgctttaccaactggtggaatgcttgtaccttatgctactttctttgcacctcctggctcaggaggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="10075" stop="12818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10375" g_stop="10455" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="81" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.338" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="82" r_stop="199" r_length="118" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="382" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12270" g_stop="12518" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="383" r_stop="632" r_length="250" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E373242" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>631</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373242" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="10375" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACA</genome_strand>
        <mrna_strand>GAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E290874" ref_strand="+" ref_description="SGN-E290874 	[cLET-10-H5]">
      <seq>tgcacttgctttaccaactggtgtaatgcttgtaccttatgctactttctttgcacctcctggctcaagaggtggtagtggtggcacccctgccaaagatgctaatggcaatgatgttgttgagactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="10093" stop="12802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="10393" g_stop="10455" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.338" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11024" g_stop="11141" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="181" r_length="118" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="182" r_stop="364" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="12270" g_stop="12502" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="598" r_length="234" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E290874" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="10393" e_stop="10455"/>
          <exon e_start="11024" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGGGTTAGTTCCTTCTTCCTTTCCTCATACTTGATGTATTAATTCCGGTATAAGTTATACGACGTTTGATAGCTAATTAAGAAGTAAGTTATGCAGGGTAGAAAATAAAATAACTATCGGTACATAACTAATATCTATATAACCGGTGTAAAGTTTGGATGGACTTATTGCTTAAGATCCAAACGTCTTATGTTAACTTATGACTTATTTTGGGTTAAAAACAATGGCTTAATAAGATTACTTTTCAATCTTACCTAAACACTGCAACTGTTTAAAAATGCCTAAAATAAGTCGATGCAAATAGGCTCTAGCTATGTTACTCTTTTGTTCAATTCTAAGTCGATAAGATAGGGACATATAGATAAATGTAATGACATGGAAACTTGATGTGTTAACAATTCCTTTGTAACTCACAAAAGATAAAAGGCTTTTGTATATCATAGACGGGCTTGATCAATCTGTTTGTCTGTCTATCTATCTATCTATCTATCTCATACGAGACATTGTTGTTACGTTTGTGTAACTAACCATGATTTGTGATTTTTTCGTTCTATCTGGAGTTGATCAACAGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATT</genome_strand>
        <mrna_strand>TGCACTTGCTTTACCAACTGGTGTAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAGAGGTGGTAGTGGTGGCACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGAGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E239225" ref_strand="-" ref_description="SGN-E239225 	[cLEL-9-G14]">
      <seq>ggtggtagtggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattccccaaattattataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="10731" stop="12746"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11031" g_stop="11141" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="294" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12270" g_stop="12460" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="485" r_length="191" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E239225" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239225" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="11031" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAG</genome_strand>
        <mrna_strand>GGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCAAATTATTATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E291006" ref_strand="+" ref_description="SGN-E291006 	[cLET-8-F10]">
      <seq>tggtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="10739" stop="12712"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11039" g_stop="11141" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="286" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12270" g_stop="12412" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="429" r_length="143" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E291006" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11039" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12412"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTC</genome_strand>
        <mrna_strand>TGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E253134" ref_strand="-" ref_description="SGN-E253134 	[cLEG-25-P6]">
      <seq>gtggtacccctgccaaagatgctaatggcaatgatgttgttgtgactgaatggctcaaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggataaaaaaaaaaaaaaaaaaaaaaactcgagactagttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="10741" stop="12818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11041" g_stop="11141" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="285" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12270" g_stop="12518" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="535" r_length="250" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="536" polyA_stop="556"/>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E253134" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="0.935" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253134" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="11041" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTC-AAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACA</genome_strand>
        <mrna_strand>GTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E286738" ref_strand="-" ref_description="SGN-E286738 	[cLES-14-N5]">
      <seq>tgctaatggcaatgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacaaaaaaaaaaaaaaaaaaaaaaaactcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="10760" stop="12818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11060" g_stop="11141" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="265" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12270" g_stop="12518" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="515" r_length="250" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="516" polyA_stop="539"/>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E286738" ref_strand="-">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286738" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="11060" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAA-AATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACA</genome_strand>
        <mrna_strand>TGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E279913" ref_strand="-" ref_description="SGN-E279913 	[cLER-8-E12]">
      <seq>tgatgttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaagggaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttggaaaacagttctttttgtaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="10772" stop="12831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11072" g_stop="11141" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="253" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12270" g_stop="12535" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="520" r_length="267" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E279913" ref_strand="-">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>519</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E279913" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="11072" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12535"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAA-GGAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGT</genome_strand>
        <mrna_strand>TGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGGAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGAAAACAGTTCTTTTTGTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E281613" ref_strand="+" ref_description="SGN-E281613 	[cLER-14-E17]">
      <seq>ttgttgtgactgaatggctcaaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="10777" stop="12806"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11077" g_stop="11141" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="248" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12270" g_stop="12506" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="486" r_length="238" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E281613" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>485</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281613" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11077" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTC</genome_strand>
        <mrna_strand>TTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E291639" ref_strand="+" ref_description="SGN-E291639 	[cLET-6-P10]">
      <seq>tcagaactcatgcacctggaactagaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="10795" stop="12818"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11095" g_stop="11141" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="230" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12270" g_stop="12518" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="480" r_length="250" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="481" polyA_stop="492"/>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E291639" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291639" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11095" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACA</genome_strand>
        <mrna_strand>TCAGAACTCATGCACCTGGAACTAGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E294995" ref_strand="+" ref_description="SGN-E294995 	[cLET-17-J22]">
      <seq>caaaactcatgcacctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="10796" stop="12802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11096" g_stop="11141" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="229" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12270" g_stop="12502" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="463" r_length="234" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E294995" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E294995" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11096" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATT</genome_strand>
        <mrna_strand>CAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E284263" ref_strand="+" ref_description="SGN-E284263 	[cLER-16-F23]">
      <seq>ctggaactcgaaccctcacacaaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagttctttttgtaattgtttattatcatttcatttttattttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="10810" stop="12865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11110" g_stop="11141" g_length="32"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="32" r_length="32" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="33" r_stop="215" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12270" g_stop="12565" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="512" r_length="297" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E284263" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="0.986" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284263" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11110" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGGAACTCGAACCCTCACACAAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACA</genome_strand>
        <mrna_strand>CTGGAACTCGAACCCTCACACAAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E281651" ref_strand="+" ref_description="SGN-E281651 	[cLER-14-F1]">
      <seq>aaggactaaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagttctttttgtaattgtttattatcatttcattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="10906" stop="12852"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11131" g_stop="11141" g_length="11"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="11" r_length="11" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="12" r_stop="194" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12270" g_stop="12552" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="478" r_length="284" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E281651" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E281651" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11131" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGACTAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTT</genome_strand>
        <mrna_strand>AAGGACTAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E292438" ref_strand="+" ref_description="SGN-E292438 	[cLET-1-H14]">
      <seq>taaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagttctttttgtaattgtttattatcatttcatttttattttataacagtggtgtctgaatcagtttacacgccnnnnaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="10911" stop="12890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11137" g_stop="11141" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="188" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12270" g_stop="12601" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="521" r_length="333" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E292438" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>520</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E292438" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11137" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12601"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCAGTTTACACGCATATTAGTTAA</genome_strand>
        <mrna_strand>TAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCAGTTTACACGCCNNNNAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E373283" ref_strand="+" ref_description="SGN-E373283 	[TUS-31-N1]">
      <seq>taaagggagatcctacttaccttgttgtggagaacgatggaacactcgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttgtattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagttctttttgtaattgtttattatcatttcatttttattttataacagtggtgtctgaatcagtttacacgcgtaaaaatctcccaagtatgggtaatcgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="10911" stop="12898"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11137" g_stop="11141" g_length="5"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="5" r_length="5" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.905" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11213" g_stop="11395" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="6" r_stop="188" r_length="183" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12270" g_stop="12590" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="189" r_stop="510" r_length="322" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E373283" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373283" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11137" e_stop="11141"/>
          <exon e_start="11213" e_stop="11395"/>
          <exon e_start="12270" e_stop="12590"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGGTACTCGTACATTTTTCGTTCAGTGTCATAGTTTCTTTGCGAAATTTAGTGTTAACTTGAAGATATTTTAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCAGTTTACACGC</genome_strand>
        <mrna_strand>TAAAG.......................................................................GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTGTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCAGTTTACACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E239148" ref_strand="-" ref_description="SGN-E239148 	[cLEL-9-G14]">
      <seq>gtggagaacgatggaacactccgcgacctatggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="10934" stop="12759"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11234" g_stop="11395" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12270" g_stop="12460" g_length="191"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="354" r_length="191" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E239148" ref_strand="-">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>353</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239148" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="11234" e_stop="11395"/>
          <exon e_start="12270" e_stop="12460"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAGAACGATGGAACACT-CGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAG</genome_strand>
        <mrna_strand>GTGGAGAACGATGGAACACTCCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E217009" ref_strand="-" ref_description="SGN-E217009 	[cLEL-1-E21]">
      <seq>tggtatcaatgctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagttctttttgtaattgtttattatcatttcatttttattttaaaaaaaaaaaaaaaaaaacccga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="10963" stop="12865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11263" g_stop="11395" g_length="133"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="133" r_length="133" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12270" g_stop="12565" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="430" r_length="297" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="431" polyA_stop="444"/>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E217009" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>429</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217009" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="11263" e_stop="11395"/>
          <exon e_start="12270" e_stop="12565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACA</genome_strand>
        <mrna_strand>TGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E218196" ref_strand="-" ref_description="SGN-E218196 	[cLEL-23-C17]">
      <seq>ggtatcaatgctgtgtgcactcaacttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagttctttttgtaattgtttattatcatttcatttttattttataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="10964" stop="43414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11264" g_stop="11395" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12270" g_stop="12565" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="429" r_length="297" r_score="0.990"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12566" i_stop="13189" i_length="624">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13190" g_stop="13203" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="430" r_stop="443" r_length="14" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E218196" ref_strand="-">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218196" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="11264" e_stop="11395"/>
          <exon e_start="12270" e_stop="12565"/>
          <exon e_start="13190" e_stop="13203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCAGTTTACACGCATATTAGTTAATTTCACTGGATGTTTACTATCTTACCCTAGTTTAGGGCTCACCATACCTTTGAGCACATGGGAAGAAATTTCTTAGTATATTTTTTTTTTATCTTCATTAAGATTTAAATAACTTTACGATTTCTCCACTATATGTCATACTAGTTTCTGTGCACGCGCGTTGCGCGTGTTTTCATTAATACTATTTTAAAAATTACATATATATTTAGTTTTGAAAATAAAGTAGCAAAAAAAAATAACTAAGATTATTTTTGAAGAATTAAAATAAATAGTTGTTCATCAATTGATTAAACTATAAAAAAAAAACTATATATATATATATATATATATATATATATATATATATATATATACTCAGCTAGAAAACGTAATAGTAATTCTATATGACTATTCAAGTGAAAGATTCCTATATGTTGTGGTAGCTAAAATAGTTTTTATTCAATGATATAATATCAAAATGAAAGAAAAATTTCTTTTAAATATTGATACTATATTTATATATGATGCATATACTTCTTATTCTTTCTATAAAATAAATTAGTAAGTTCAAATCTGAAGATACATATAAAGAAACCTTACAAAAATATAAAAAAAATAAAAAA</genome_strand>
        <mrna_strand>GGTATCAATGCTGTGTGCACTCAACTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E297201" ref_strand="+" ref_description="SGN-E297201 	[cLET-29-F4]">
      <seq>gctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagntctttttgtaattgtttattatcatttcatttttattttataaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="10973" stop="43410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11273" g_stop="11395" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12270" g_stop="12565" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="420" r_length="297" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12566" i_stop="12827" i_length="262">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="12828" g_stop="12836" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="421" r_stop="429" r_length="9" r_score="0.889"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E297201" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E297201" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11273" e_stop="11395"/>
          <exon e_start="12270" e_stop="12565"/>
          <exon e_start="12828" e_stop="12836"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCAGTTTACACGCATATTAGTTAATTTCACTGGATGTTTACTATCTTACCCTAGTTTAGGGCTCACCATACCTTTGAGCACATGGGAAGAAATTTCTTAGTATATTTTTTTTTTATCTTCATTAAGATTTAAATAACTTTACGATTTCTCCACTATATGTCATACTAGTTTCTGTGCACGCGCGTTGCGCGTGTTTTCATTAATACTATTTTAAAAATTACATATATATTTAGTTTTGAAAATAAAGTAGCAAAAAAAA</genome_strand>
        <mrna_strand>GCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGNTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAAAA......................................................................................................................................................................................................................................................................AAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E296587" ref_strand="+" ref_description="SGN-E296587 	[cLET-39-I17]">
      <seq>gctgtgtgcactcaccttggttgtgtcgtgccgtggaatactgctgagaacaagttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcagacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagttctttttgtaattgtttattatcatttcatttttattttatgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="10973" stop="12865"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11273" g_stop="11395" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12270" g_stop="12565" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="420" r_length="297" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E296587" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>419</cumulative_length_of_scored_exons>
        <coverage percentage="0.977" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E296587" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="11273" e_stop="11395"/>
          <exon e_start="12270" e_stop="12565"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACA</genome_strand>
        <mrna_strand>GCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E218261" ref_strand="-" ref_description="SGN-E218261 	[cLEL-23-B17]">
      <seq>caagttcatttgcccttgccatggatctcaatgcaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcacacgttaatgatgggaaagtggtgtttgttacatgggttgaaacagacttcacaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatgcagttctttttgtaattgtttattatcatttcatttttattttataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="11023" stop="43414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11323" g_stop="11395" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="0.986"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12270" g_stop="12565" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="370" r_length="297" r_score="0.973"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12566" i_stop="13189" i_length="624">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13190" g_stop="13203" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="384" r_length="14" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E218261" ref_strand="-">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218261" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="11323" e_stop="11395"/>
          <exon e_start="12270" e_stop="12565"/>
          <exon e_start="13190" e_stop="13203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCAGTTTACACGCATATTAGTTAATTTCACTGGATGTTTACTATCTTACCCTAGTTTAGGGCTCACCATACCTTTGAGCACATGGGAAGAAATTTCTTAGTATATTTTTTTTTTATCTTCATTAAGATTTAAATAACTTTACGATTTCTCCACTATATGTCATACTAGTTTCTGTGCACGCGCGTTGCGCGTGTTTTCATTAATACTATTTTAAAAATTACATATATATTTAGTTTTGAAAATAAAGTAGCAAAAAAAAATAACTAAGATTATTTTTGAAGAATTAAAATAAATAGTTGTTCATCAATTGATTAAACTATAAAAAAAAAACTATATATATATATATATATATATATATATATATATATATATATATACTCAGCTAGAAAACGTAATAGTAATTCTATATGACTATTCAAGTGAAAGATTCCTATATGTTGTGGTAGCTAAAATAGTTTTTATTCAATGATATAATATCAAAATGAAAGAAAAATTTCTTTTAAATATTGATACTATATTTATATATGATGCATATACTTCTTATTCTTTCTATAAAATAAATTAGTAAGTTCAAATCTGAAGATACATATAAAGAAACCTTACAAAAATATAAAAAAAATAAAAAA</genome_strand>
        <mrna_strand>CAAGTTCATTTGCCCTTGCCATGGATCTCAATGCAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCACACGTTAATGATGGGAAAGTGGTGTTTGTTACATGGGTTGAAACAGACTTCACAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATGCAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E217840" ref_strand="-" ref_description="SGN-E217840 	[cLEL-23-C17]">
      <seq>gttcatttgcccttgccatggatctcaatacaacaatcaaggaaaagttgttagaggacctgctcctttatccttggcattggctcatgcaaacgttgatgatgggaaagtggtgtttgttccatgggttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacataaaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatacagttctttttgtaattgtttattatcatttcatttttattttataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="11026" stop="43414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11326" g_stop="11395" g_length="70"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12270" g_stop="12565" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="367" r_length="297" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12566" i_stop="13189" i_length="624">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13190" g_stop="13203" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="381" r_length="14" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E217840" ref_strand="-">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217840" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="11326" e_stop="11395"/>
          <exon e_start="12270" e_stop="12565"/>
          <exon e_start="13190" e_stop="13203"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCAGTTTACACGCATATTAGTTAATTTCACTGGATGTTTACTATCTTACCCTAGTTTAGGGCTCACCATACCTTTGAGCACATGGGAAGAAATTTCTTAGTATATTTTTTTTTTATCTTCATTAAGATTTAAATAACTTTACGATTTCTCCACTATATGTCATACTAGTTTCTGTGCACGCGCGTTGCGCGTGTTTTCATTAATACTATTTTAAAAATTACATATATATTTAGTTTTGAAAATAAAGTAGCAAAAAAAAATAACTAAGATTATTTTTGAAGAATTAAAATAAATAGTTGTTCATCAATTGATTAAACTATAAAAAAAAAACTATATATATATATATATATATATATATATATATATATATATATATACTCAGCTAGAAAACGTAATAGTAATTCTATATGACTATTCAAGTGAAAGATTCCTATATGTTGTGGTAGCTAAAATAGTTTTTATTCAATGATATAATATCAAAATGAAAGAAAAATTTCTTTTAAATATTGATACTATATTTATATATGATGCATATACTTCTTATTCTTTCTATAAAATAAATTAGTAAGTTCAAATCTGAAGATACATATAAAGAAACCTTACAAAAATATAAAAAAAATAAAAAA</genome_strand>
        <mrna_strand>GTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCAAACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAAAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E217761" ref_strand="-" ref_description="SGN-E217761 	[cLEL-23-B17]">
      <seq>atcaaggaaaagttgttagaggacatgctcctttatccttggcattggctcatgcacacgttgatgatgggaaagtggtgtttgttccatgggttaaaacagacttcacaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtagctattgaaacattacccaaaataacatttctcatttgggatgcagttctttttgtaattgtttattatcatttcagttttattttataaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="11061" stop="43414"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="11361" g_stop="11395" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="12270" g_stop="12565" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="332" r_length="297" r_score="0.970"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="12566" i_stop="13188" i_length="623">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="13189" g_stop="13202" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="346" r_length="14" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E217761" ref_strand="-">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>345</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217761" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="11361" e_stop="11395"/>
          <exon e_start="12270" e_stop="12565"/>
          <exon e_start="13189" e_stop="13202"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTAGTAAGTTCAAAACCCCTGTTTTAAATGCTCTACTACTTGTCTTTATATTTTTCTTATCAATCACCCTTTTGCCTTTTGGCTTCGAGGGGCGGCTTCTGTCGGTTCAACTGAACACATTCTAGCTCCAACTATTTATAAGAATATATACATTAAGATCACGCTCATTCTAAATTCACTGGTTTTGTTTGGTTAGGGACGACATTTATAATGACACATGCTATGTTTACAGAGTGAATCTAGGATCTAAACATTACATGTTTAACCTTTACAAAAGGTTTTTACCATTGAATTCATGTATTTTTATAGTTGTATGTTCATATCTACTTGTTTGTAACAAGTTTTAAATATATAAAAAATAAATTAATCACAAATAAGATCGGAAGAAACAAGAATACTATTGATAAATAGTTATCGGTGTAATTTTGTTTCTCCCTTATTCTTCTCTCTGGATATTTTCCTTAATTTGAGGGTAGCTAGTAGCGTATTTCTCAAATTAAAGATGATAGAATTTGTGAATCTTCTTGAAGTATTTGATTATAAGAATAGTGATATATTTTGATTTCTTTATGAATATTCCAAGCGTTAACAGGATATTTGAGATGTCACTTTAAGGGAATATAATACGCTTTATATAGACATAAGCTAGGTTGTAGGGTAGAGTAGCCTCAAACAATCCTAAGTGGAATCGAGTACATCTTGTAGAGTCCCAATTAGAATTTAACATGTGAGTTTCACAGAATTTCAATGTCTTCCCTACTATTTTCTTACTATTTTATGGATGTTAACGTAAATTTATGTTTCGTCTCGAAAGTACTAGGTTCAGATGGATTCGACACCGATACTAACATTGTGTTTTTTTTTTTTGTTGGCACAGTCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCAGTTTACACGCATATTAGTTAATTTCACTGGATGTTTACTATCTTACCCTAGTTTAGGGCTCACCATACCTTTGAGCACATGGGAAGAAATTTCTTAGTATATTTTTTTTTTATCTTCATTAAGATTTAAATAACTTTACGATTTCTCCACTATATGTCATACTAGTTTCTGTGCACGCGCGTTGCGCGTGTTTTCATTAATACTATTTTAAAAATTACATATATATTTAGTTTTGAAAATAAAGTAGCAAAAAAAAATAACTAAGATTATTTTTGAAGAATTAAAATAAATAGTTGTTCATCAATTGATTAAACTATAAAAAAAAAACTATATATATATATATATATATATATATATATATATATATATATATACTCAGCTAGAAAACGTAATAGTAATTCTATATGACTATTCAAGTGAAAGATTCCTATATGTTGTGGTAGCTAAAATAGTTTTTATTCAATGATATAATATCAAAATGAAAGAAAAATTTCTTTTAAATATTGATACTATATTTATATATGATGCATATACTTCTTATTCTTTCTATAAAATAAATTAGTAAGTTCAAATCTGAAGATACATATAAAGAAACCTTACAAAAATATAAAAAAAATAAAAA</genome_strand>
        <mrna_strand>ATCAAGGAAAAGTTGTTAGAGGACATGCTCCTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGGCATTGGCTCATGCACACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTAAAACAGACTTCACAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAGCTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATGCAGTTCTTTTTGTAATTGTTTATTATCATTTCAGTTTTATTTTATAAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E215938" ref_strand="-" ref_description="SGN-E215938 	[cLEL-13-B5]">
      <seq>tggtgtttgttccatgggtttgaaacagacttcagaactggtgatgctccatggtgggcttagaaatcccatctagcttctattattagtagtatataatattctcttgtaccattgttacatagaagcttattcccctttttattataaaggaaaaaaaaatgtaactattgaaacattacccaaaataacatttctcatttgggatcnaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="12010" stop="12815"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="12310" g_stop="12518" g_length="209"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="0.971"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="212" polyA_stop="228"/>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E215938" ref_strand="-">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>209</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E215938" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="12310" e_stop="12518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGTTTGTTCCATGGG-TTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGG-AAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACA</genome_strand>
        <mrna_strand>TGGTGTTTGTTCCATGGGTTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATCNA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E369458" ref_strand="-" ref_description="SGN-E369458 	[TUS-23-A21]">
      <seq>aaagttccccttggaaaacaatttaacacctttgagaatagtttttatattggaaatccaaacttgtgcggagctccactctcacgagtctgctcggataatatacatgaggacatgattgactgtagtattaacaagaatcaggaggttcatgagcagggaaaaagcaacaactggctcgaggaatattcgttttacacaagcatggtaattggattcaatacaggtttcttgttgttttgggttactttactgttgaaaaagtcatggagatatgcatatatgaggtgcctggaaaacatgggcaataagatttatgtctttgctgccatcagatggagaaaatttcaagcagcaaagacagtgaccaattgtccaaattgagctgctgattctctttacttttctatcttttcttttataatatcgtgttttttacttcctacttgttgttttaaatataatgtttgtttttatcggcacttatattttattgtaatgttttttgttatgaagtaacgaaattgatttggtgtaattgccccattacttaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="15405" stop="14249"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15106" g_stop="14552" g_length="555"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="555" r_length="555" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="556" polyA_stop="572"/>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E369458" ref_strand="-">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>555</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369458" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="15106" e_stop="14552"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTCCACTTGGAAAACAATTTAACACCTTTGAGAATAGTTCTTATATTGGAAATCCAAACTTGTGCGGAGCTCCACTCTCACGAGTCTGCTCGGATAATATACATGAGGACATGATTGACTGTAGTATTAACAAGAATCAGGAGGTTCATGAGCAGGGAGAAAGCAACAACTGGCTCGAGGAATATTCGTTCTACACAAGCATGGTAATTGGATTCAATACAGGTTTCTTGTTGTTTTGGGTTACTCTACTGTTGAAAAAGTCATGGAGATATGCATATATGAGGTGCCTGGAAAACATGGGCAATAAGATTTATGTCTTTGCTGCCATCAGATGGAGAAAATTTCAAGCAGCAAAGACAGTGACCAATTGTCCAAATTGAGCTGCTGATTCTCTTTACTTTTCTATCTTTTCTTTTATAATATCGTGTTTTCTACTTCCTACTTGTTGTTTTAAATATAATGTTTGTTTTTATCGGCACTTATATTTTATTGTAATGTTTTTTGTTATGAAGTAACGAAATTGATTTGGTGTAATTGCACAATTACTTGAA</genome_strand>
        <mrna_strand>AAAGTTCCCCTTGGAAAACAATTTAACACCTTTGAGAATAGTTTTTATATTGGAAATCCAAACTTGTGCGGAGCTCCACTCTCACGAGTCTGCTCGGATAATATACATGAGGACATGATTGACTGTAGTATTAACAAGAATCAGGAGGTTCATGAGCAGGGAAAAAGCAACAACTGGCTCGAGGAATATTCGTTTTACACAAGCATGGTAATTGGATTCAATACAGGTTTCTTGTTGTTTTGGGTTACTTTACTGTTGAAAAAGTCATGGAGATATGCATATATGAGGTGCCTGGAAAACATGGGCAATAAGATTTATGTCTTTGCTGCCATCAGATGGAGAAAATTTCAAGCAGCAAAGACAGTGACCAATTGTCCAAATTGAGCTGCTGATTCTCTTTACTTTTCTATCTTTTCTTTTATAATATCGTGTTTTTTACTTCCTACTTGTTGTTTTAAATATAATGTTTGTTTTTATCGGCACTTATATTTTATTGTAATGTTTTTTGTTATGAAGTAACGAAATTGATTTGGTGTAATTGCCCCATTACTTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E369459" ref_strand="+" ref_description="SGN-E369459 	[TUS-23-A21]">
      <seq>ttcatcaaaaattttgtctaacaaatttcactaaaacttatggaaagtgtagctattctttcccttctccttgttgttgttattccatatggattttcttgtgtccaaacttgtgaaattcactgcattgaaggtgaaaaaaatgctcttataaagttcatccagggcttcaagaattcgtcacagaacatgttgtggcttgacgaaaattgctgtcaatggaaaggtgttaaatgcgataacaaaacagggcatgtgatcactcttgatctgcaaaatcaattcttacaaggagaagttccacttggaaaacaatttaacacctttgagaatagttcttatattggaaatccaaacttgtgcggagctccactctcacgagtctgctcggataatatacatgaggacatgattgactgtagtattaacaagaatcaggaggttcatgagcagggagaaagcaacaactggctcgaggaatattcgttctacacaagcatggtaattggattcaatacaggtttcttgttgttttgggttactctactgttgaaaaagtcatggagatatgcatatatgaggtgcctggaaaacatgggcaataagatttatgtctttgctgccatcagatggagaaaatttcaagcagcaaagacagtgaccaattgtccaaattgagctgctgattctctttacttttctatcttttcttttataatatcgtgttttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="22812" stop="14369"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22512" g_stop="22221" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22220" i_stop="15109" i_length="7112">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15108" g_stop="14669" g_length="440"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="732" r_length="440" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E369459" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22512" e_stop="22221"/>
          <exon e_start="15108" e_stop="14669"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCAAAAATTTTGTCTAACAAATTTCACTAAAACTTATGGAAAGTGTAGCTATTCTTTCCCTTCTCCTTGTTGTTGTTATTCCATATGGATTTTCTTGTGTCCAAACTTGTGAAATTCACTGCATTGAAGGTGAAAAAAATGCTCTTATAAAGTTCATCCAGGGCTTCAAGAATTCGTCACAGAACATGTTGTGGCTTGACGAAAATTGCTGTCAATGGAAAGGTGTTAAATGCGATAACAAAACAGGGCATGTGATCACTCTTGATCTGCAAAATCAATTCTTACAAGGTGAGTTTGGGATTTCTCTACTTGACTTGCCACATTTGGTACACTTAGACATGAGCCAAATTGATTTCCAGGGAGCACATATTCCTGATTTCATCTCCAGTTTTAAAAACCTGGAATATCTCAATTTGTCTAAAACGAATTTTAGGGGAGAAATTCCTGAGAATCTTGGCAATCTGTCGCGATTACAGTTTCTTGATCTGAGCGGTTATTATTCACTCAGTGTGAGTAGCCTTAAGTGGATTCAGCCCCTCTTTTCTATGAAGACTCTTGATTTGAGTGGTGTTAACATGAGAAGCGCGGAAAACTGGCTACATGACATCAATATGTTAAGTTCGCTCTCTGAATTACGTTTGTCTGCTTGTCAGCTTACTACATTCCCTGAATTGCTTCCGATTAATGTGAGTTTCACATCTCTTCGGGTTCTTGATCTTTCATTGAACTATTTTGATACTAGTATTCCTAGCTGGTTGTTCCATACATGCCAAGATCTTGTTTATCTTAATCTTTCGAGAAGTCAGCTGGATGGTTTGATTCCAAATGATTTTGGAAATATGAGTTCACTCAGAGTTCTTGATCTTTCCAAGAACTCTCTCCGAGGCAATCTTTCACATTCCTGTGAGAAAATGAGTTCACTGTCCTTTCTTGATCTCTCAAGAAACTCGTTCACGGGTTATTTACCACCAACCCTGCCATCAAAGCTGAAATACTTGGATATTTCTGATAATGAAATGTGATAGTTTTTATATATCATGGAGTTAATACTCCATTGTTGCAGGTTACTGCAATATCAAAGAAATGACAGTAAGAAACTTGAAGAAGAAAGAGAAGAAGCTAATAGATTTTCTATATTTCAAGTATACAATAATGACTCCTATTTATAGGGATCATGTCATTTCTATTTGATCACATTTTTGGAGTGGAAGTTAGTTACAACTAACTACAAGTTGCCTAACTACTTCCATGACTCCTAACTAACTAATTCTAACAAACCTAACTACCTATTGGACTTATGTAATTCCAATACTCCCCCTCAAGCTGGAATCTCTATAGACATTAAAGACTCCAAGCTTGTTGATCAGTTCAAGATGTTGAGAAACTCCCAGCCCTTTGGTTAGAAGATCTGCTAATTGCTCCTTTGTGTTGATATATTCTGTGTGTATCATACCACTTTTGATTTTTTCCCTCACAAAATGACAATCAATCTCAATGTGTTTGGTTCTTTCATGAAAAATAGGATTAGCTCCAATTTGAATTGCAGCCTTACTATCACAGTGCAATTTTACAGGAACTATCACATTCACATTAAGTTCTTTCAATACTCCAAGTAACCAAGATATTTCTGATACTGCAGCTGCCATGCTTCTATACTCAGCTTCTGCTGAACTTCTGCTGACTGTATGTTGCTTCTTGGATTTCCAAGAAATGAGTGAATTCCCTAGCTTGATTACATACCCTGTCACTGACCTTCTTGTGTTTGGACATGATGCCCAGTCTGAGTCACAGAATGCCTCCATTTCATTGCTGTCTTCACTGCTAAGTAGTATCCCTTGTCCTGGACATCCTTTAATATATCTAACCAATCTCAATGCAGCTTCCCAGTGAGACACCTTAGGTTTCTGCATGAACTGTGATAAAACTTGTACAGCAAAACATATATCAGGCCTAGTAGTTGTTAAGTATAACAATCTACCAATTAATCTCTGATATGCAGTAACATTTGCATATAAAGGATCATCTGTCTTTGCAGTGGCTTCATCATATTCAACAGTAGTTAATTTGACACCTGATTCTAAAGGTGTGCTTGCTGGTTTTGACCCTCCAAGACCACAGTCAGAAATCAACTCTAGTGCATACTTTCTTTGGCTAAGAATAATACCATTTCTTGATCTTAGTACTTCAATACCAAGAAAATACTTTAGATCACCAAGATCTTTCATTTTGAAGTTACTATGTAATGTAGTCTTTAGATCCTCAATTAGAACACTGCTATTTCCAGTTATAAGAAGATCATCTACATAGATCAACACTGCTGCAATATCATCACCAACTATCTTTGTGAAAAGAGAATGATCATAAGAACTTTGAGAATAACCAGCAGTAACTAGAGCCTCAGTTAGCTTAAGGTTCCATTGCCTGGAAGTTTGTTTCAAGCCATATAAAGATTTCAACAATTTACACACTTTGTTCTCCCCCTGCCTCTGAAATCCTTGAGGAAAGTCCATGTATACTTCTTCATTGAGATCACCTTGAAGGAAAGCATTATGAACATCCATTTGAAAAAGAGGCCAACCATGGGATGCTGCAACACTAATCACAGTTCTCACTGTGACCATCTTAGCTACTGGAGAAAATGTTTCATGATAGTCCAACCCTTCTTGTTGATTATAGCCTTTGGCAACTAACCTTGCCTTGTACCTTTCCACCTCACCATTAGCTTTAAGTTTAACTTTATAAACCCATTTTGAACCAATAGGATGTTTACCAGATGGCAAATCTACTATTGCCCAGGTATTGTTTTGTTCTAAAGCAGCTACTTCAGACTGCATTGCATCCACCCATTGTTGGTGTTTGGAGGCTTCCTTAAAGCTGGTGGGTTCCACTATAACTGAGAACCCCTTGATAAAGTTTTGATAAGATGGTGTCAAGAGTTCATATGACAAATTATTAGCAATAGGATATGAACAAGTCATATTAGACTTAGTTGAAATTATGTAATCTTTATGCCAAAGAGGAGGCCTAGTATTTCTAGCAGTTCTTCTAGCAGGTGTAAGATCACCATCATCTGTGATTTCACTATGTTGTGGCTCCAGCAGATTATTCTCTAAAGAAGCATCAACTTCTGATTGTATAGGATTGATCTCCTCAACATGATCTTCAATAGAATCTACAGGATTTGAAGGTATATTATCATCTGCATGATCAAACATATCCATTTGTATAGGAGCAGTATAATCTGTGGTTGATGATACTTCTTTTGTGATAACATCTTTGAAAGGAAATGAATCTTCCATGAATGTAACCTCCCTGCTCACTGATATGACATGAGTCTCCAAATCCATGACTTTATATCCTTTTTGTGTCTCTGAGTACCCAATGAAGACTGATCTTGTTGCTCTTGGAGCAAATTTATCTCTTCTTGGCAAAACTGATACAAAACATAAACATCCAAACACCCTCAAATGTTCTAGATTAGGTGCTCGTTTATAAAGAAGTTCATATGGTGACTTCCCTTGTAATACAGTTGTAGGCATTCTGTTTATCAGATAAGCTGCAGTTTTAACACAATTTCCCCAAAATCTGATAGGAATTTCACTGTGAAATCTCAGTGCTCTGGCTACATTTAATATGTGTCTATGCTTTCTTTCAACAACACTATTTTGTTGAGGTGTATAAGCACATGAACTCTGATGAACTATTCCAAGAGAAGAAAACAAAACACTGCATTTAGAGTTAAAAAACTCAGTTCCATTATCAGTTCTCACAACTTGAACTTTAACACCAAATTGTGTATTAACCATCAACATAAAGTCTTTCAATATAATGTGCACATCTGATTTGTGTTGAACTAGACAAAGCCAAGTAAATCTACTGAAATCATCAACAATTGTCACAAAATACTGCTTATTATCATGTGTAAGAACTTTGTAAGGTCCCCAGAGATCAACATGAAGAAGTTGAAAATTATGAGTTGACTTAGAATTACTTGTAGGAAAACTCAATCTACTTTGTTTGGCCACTGGACATATTTGACAGCAATTGTATGTGGAGATGTTGAAGTACTTCTTAAGAGAAATTATCTGTTCCATAACTTTGATAGGTGGATGTCCAAGTCTGAAATGCCACAAGTCAGCCAAACTTGCACCCTTTTTTGATGTTGAAGCTGAATTAACTCTTGCTCTAACAGTACTTTGTAGTAGGTATAAACCATCAATCTCTTTACCAATCCCAATCACCTTGCCATTGTAAAGTTCCTGCAGTACACAAAAGTGAGGAAAGAAACTCACACTACAAGATAATTCCTTGGTGAGTTTTGCCACAGATAGTAAATTGAACTTAAAATCAGGTACATGAAGTACATTCTTCACTGTCTGATTTCCAAAAATGACTGAATTGCCTGTATGTTTCACTTGAGCTCTGCTTCCTGTTGGCAACTGAACTGTACTCGAGTATTCATTCTTTGTGTTTTTCAATTCATACATGAGCTCCTCATATGAAGCAACATGATGAGTAGCTCCTGAATCAATTATCCAGTCATATGCAGATGATTTAGTCTGTAAAGAAACATTACCTGTCAAGTTAGCCTTGCAGTCACTTGGTTCTTTGTTGTGTAACAGATTCTTCATTTGATTGTATTCTTTCTTTGTGAATTCAGATTCCTCCCTCTGTTTATCTATTGAAGCATTGTTAGCATATGGCTTAAAGTTTCCAGAATTTCCAGTGTTGTTGTAAGTATTACTACTGTAAGAACCATGTGATCTAAAACCTTCATTGTTGTTCTGGTATGATCCAGTAGAATCTGATTGTTTCCTCTTACTCTTGAAGTCAGAAGGATATCCTACCAGCCTATAGCACTTTTCAGTTACATGATTTTTGAAACCACAGATCTCACATCCAGTATTGTTATTGCCTGGCAATACTTTCTTCCCTTTGAATCCTTGTCCTTGTCCTTTTCCTGCCATCATAGTAAGTGGTTCTTTATTTGAATCCACAACACCTAATACTCTTTGGCTTTCCTCTTGAATTACAGTTGCATAAGCTTGGTTAATTGTAGGTACCTCACTTTTCAGCAACAAATCACTTCTCACATGACTGAAAGTCTCATTTAACCCCATCAAGAACATCATCAATCTTTGTTGATGTAAATGCTCAATGTAAGGCTTAGCATCATCACATTTACATGATGGTGAAGGCACCAATACATCATACTCATCCCATAAATCCCTCAATTTAGAATAATACTCTGTTACAGAATCCGTACCTTGCTTTAATGTGGCTACTTCTGTCCAAAGTTGATAGATCCTAGTAAGATTAGATTTATCAAACCTCTCCTTGAAATCTTCCCAAACTCGTTTTGCATTTGATGCATATACTATTGTTGTTAACAAATTGTTTGCTACTGTGCTGCTAATCCATGAAAGAACCACTGCATTGCACCTTTCCCATTGAACTGCTAATTCATCCTTGTACATACTCTTTAAACAGGTTCCATCTATGAAGCCTATCTTGTTCTTCACCAACAGTGCCAATCTCATCGATCTGCTCCAAAGACCATAATTCTCAGGTCCTGTAAGCTTTGTTGTGATCAATGCAACACCAGGCGTGTCTGAAGGCTGCAGATAGAGTGGATGATTGTGTCCAAGAGTTGCTACAGTAAGTTCTGCCATGGCTATAATCTGATCTTCAAAAATTACTTCGCGGAAAGAAAAAATTCGAAATCAAATTAGTCCTAATTACGCCCGCTCTGATACCATGATAGTTTTTATATATCATGGAGTTAATACTCCATTGTTGCAGGTTACTGCAATATCAAAGAAATGACAGTAAGAAACTTGAAGAAGAAAGAGAAGAAGCTAATAGATTTTCTATATTTCAAGTATACAATAATGACTCCTATTTATAGGGATCATGTCATTTCTATTTGATCACATTTTTGGAGTGGAAGTTAGTTACAACTAACTACAAGTTGCCTAACTACTTCCATGACTCCTAACTAACTAATTCTAACAAACCTAACTACCTATTGGACTTATGTAATTCCAATAAAATGGAAGGTCCTTTAGGAAGAAGCATCACACAACTTAAGCAATTAGTTGTCCTCAATGTTGCTCGAAACTCTTTCAATGACTCGATTACAGAACATTTCTTGAATTTAACTGATTTGAGAGTGTTAGACTTGTCATCCAACTCGTTTATCTTCAACGTAAGTGCAACTTGGATGCCTCGTTTCCAACTTGAGTTTATAAGCCTGCAGTCTTGCGGACTTGGTGCACGATTTCCTCAGTGGCTTCAGACACAGAAAGAGTTGTCATTTATTGATATCTCTCGCGTTAACATCTCAGGACATGTGCCTGATTGGTTCTGGAATTTTTCTGCTAAGGTTAATCACATAGACCTTTCGCAGAACTATATCGGAGGACAAGTCCCTGATTTTACAGAGAGAGTTCATCTTACAAAATTGGACCTGAGTGACAACAATTTTCATGGTCCTTTGCCTCATTTTTCACCCAATATGATGACACTGATTTTGGCAAGTAACTCCTTTAACGGTACTATCGCCCCTGTATGTGAATCGCTTGTCATGAATAACTCTCTCAGTCTTCTAGACCTATCCTCAAATTCTCTATCAGGACAACTTTTAGACTGTTGGAGATATGGGAAGAATCTGCAAGGATTGAATTTAGGCCATAATGATCTATCAGGGGAGATACCTCGTTCCATCGGAGATCTTGCCAATCTCTTCTTTCTGCAATTGCAAAACAACAAGTTCTCCAAAAATATGCCTTCATCATTGAAGAACATAAGTGCACTAAAAATTCTTGATGTTTCTGAAAATAGTTTATCTGGAAAGATACCAAATTGGTTAGGAGAGAGTTTAAATACTCTAGAGATTCTTAAATTAAGCGGAAACATGTTTGACGGAACCATTCCTAGGGAGATTTGCCAGCTTAAATACTTGTATACTTTGGACCTTAGTTCCAATGCACTATCAGGAGTCATTCCAAGGTGTGTTGATAATCTCCGCACCATGTCCGGAGAAGAGGAGGCTCCTTCCTTTACTCATGGACCCTATGCAGATTACAGGGTTCAAGGAAGGATCGTTTTAAAGGGATACAGTTACGACATCTTTTTTCACTGGTCCTACGTAGTAATTGATCTATCAGACAATCATTTATCAGGGGAAATTCCCGAGGAAATCGCCAGCCTTACTGCACTGAGGAGCTTGAATTTATCATGGAATCATTTCACAGGAGCAATTCCACGTTACATTCACAAAATGCAGATTTTGGAATTTCTTGATCTTTCCAGGAATAAGCTGTCATGTACATTTCCTCCCGATATCATACAACTTCCACTTCTTGTGTTTGTGAATGTTTCTTTCAATGATTTGACAGGAGAAGTTCCACTTGGAAAACAATTTAACACCTTTGAGAATAGTTCTTATATTGGAAATCCAAACTTGTGCGGAGCTCCACTCTCACGAGTCTGCTCGGATAATATACATGAGGACATGATTGACTGTAGTATTAACAAGAATCAGGAGGTTCATGAGCAGGGAGAAAGCAACAACTGGCTCGAGGAATATTCGTTCTACACAAGCATGGTAATTGGATTCAATACAGGTTTCTTGTTGTTTTGGGTTACTCTACTGTTGAAAAAGTCATGGAGATATGCATATATGAGGTGCCTGGAAAACATGGGCAATAAGATTTATGTCTTTGCTGCCATCAGATGGAGAAAATTTCAAGCAGCAAAGACAGTGACCAATTGTCCAAATTGAGCTGCTGATTCTCTTTACTTTTCTATCTTTTCTTTTATAATATCGTGTTTTCTA</genome_strand>
        <mrna_strand>TTCATCAAAAATTTTGTCTAACAAATTTCACTAAAACTTATGGAAAGTGTAGCTATTCTTTCCCTTCTCCTTGTTGTTGTTATTCCATATGGATTTTCTTGTGTCCAAACTTGTGAAATTCACTGCATTGAAGGTGAAAAAAATGCTCTTATAAAGTTCATCCAGGGCTTCAAGAATTCGTCACAGAACATGTTGTGGCTTGACGAAAATTGCTGTCAATGGAAAGGTGTTAAATGCGATAACAAAACAGGGCATGTGATCACTCTTGATCTGCAAAATCAATTCTTACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGTTCCACTTGGAAAACAATTTAACACCTTTGAGAATAGTTCTTATATTGGAAATCCAAACTTGTGCGGAGCTCCACTCTCACGAGTCTGCTCGGATAATATACATGAGGACATGATTGACTGTAGTATTAACAAGAATCAGGAGGTTCATGAGCAGGGAGAAAGCAACAACTGGCTCGAGGAATATTCGTTCTACACAAGCATGGTAATTGGATTCAATACAGGTTTCTTGTTGTTTTGGGTTACTCTACTGTTGAAAAAGTCATGGAGATATGCATATATGAGGTGCCTGGAAAACATGGGCAATAAGATTTATGTCTTTGCTGCCATCAGATGGAGAAAATTTCAAGCAGCAAAGACAGTGACCAATTGTCCAAATTGAGCTGCTGATTCTCTTTACTTTTCTATCTTTTCTTTTATAATATCGTGTTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E240790" ref_strand="+" ref_description="SGN-E240790 	[cLED-24-O2]">
      <seq>ttcatcaaaaattttgtctaacaaatttcactaaaacttatggaaagtgtagctattctttcccttctccttgttgttgttattccatatggattttcttgtgtccaaacttgtgaaattcactgcattgaaggtgaaaaaaatgctcttataaagttcatccagggcttcaagaattcgtcacagaacatgttgtggcttgacgaaaattgctgtcaatggaaaggtgttaaatgcgataacaaaacagggcatgtgatcactcttgatctgcaaaatcaattcttacaaggagaagttccacttggaaaacaatttaacacctttgagaatagttcttatattggaaatccaaacttgtgcggagctccactctcacgagtctgctcggataatatacatgaggacatgattgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="22812" stop="14684"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22512" g_stop="22221" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="22220" i_stop="15109" i_length="7112">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15108" g_stop="14984" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="293" r_stop="417" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E240790" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22512" e_stop="22221"/>
          <exon e_start="15108" e_stop="14984"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCAAAAATTTTGTCTAACAAATTTCACTAAAACTTATGGAAAGTGTAGCTATTCTTTCCCTTCTCCTTGTTGTTGTTATTCCATATGGATTTTCTTGTGTCCAAACTTGTGAAATTCACTGCATTGAAGGTGAAAAAAATGCTCTTATAAAGTTCATCCAGGGCTTCAAGAATTCGTCACAGAACATGTTGTGGCTTGACGAAAATTGCTGTCAATGGAAAGGTGTTAAATGCGATAACAAAACAGGGCATGTGATCACTCTTGATCTGCAAAATCAATTCTTACAAGGTGAGTTTGGGATTTCTCTACTTGACTTGCCACATTTGGTACACTTAGACATGAGCCAAATTGATTTCCAGGGAGCACATATTCCTGATTTCATCTCCAGTTTTAAAAACCTGGAATATCTCAATTTGTCTAAAACGAATTTTAGGGGAGAAATTCCTGAGAATCTTGGCAATCTGTCGCGATTACAGTTTCTTGATCTGAGCGGTTATTATTCACTCAGTGTGAGTAGCCTTAAGTGGATTCAGCCCCTCTTTTCTATGAAGACTCTTGATTTGAGTGGTGTTAACATGAGAAGCGCGGAAAACTGGCTACATGACATCAATATGTTAAGTTCGCTCTCTGAATTACGTTTGTCTGCTTGTCAGCTTACTACATTCCCTGAATTGCTTCCGATTAATGTGAGTTTCACATCTCTTCGGGTTCTTGATCTTTCATTGAACTATTTTGATACTAGTATTCCTAGCTGGTTGTTCCATACATGCCAAGATCTTGTTTATCTTAATCTTTCGAGAAGTCAGCTGGATGGTTTGATTCCAAATGATTTTGGAAATATGAGTTCACTCAGAGTTCTTGATCTTTCCAAGAACTCTCTCCGAGGCAATCTTTCACATTCCTGTGAGAAAATGAGTTCACTGTCCTTTCTTGATCTCTCAAGAAACTCGTTCACGGGTTATTTACCACCAACCCTGCCATCAAAGCTGAAATACTTGGATATTTCTGATAATGAAATGTGATAGTTTTTATATATCATGGAGTTAATACTCCATTGTTGCAGGTTACTGCAATATCAAAGAAATGACAGTAAGAAACTTGAAGAAGAAAGAGAAGAAGCTAATAGATTTTCTATATTTCAAGTATACAATAATGACTCCTATTTATAGGGATCATGTCATTTCTATTTGATCACATTTTTGGAGTGGAAGTTAGTTACAACTAACTACAAGTTGCCTAACTACTTCCATGACTCCTAACTAACTAATTCTAACAAACCTAACTACCTATTGGACTTATGTAATTCCAATACTCCCCCTCAAGCTGGAATCTCTATAGACATTAAAGACTCCAAGCTTGTTGATCAGTTCAAGATGTTGAGAAACTCCCAGCCCTTTGGTTAGAAGATCTGCTAATTGCTCCTTTGTGTTGATATATTCTGTGTGTATCATACCACTTTTGATTTTTTCCCTCACAAAATGACAATCAATCTCAATGTGTTTGGTTCTTTCATGAAAAATAGGATTAGCTCCAATTTGAATTGCAGCCTTACTATCACAGTGCAATTTTACAGGAACTATCACATTCACATTAAGTTCTTTCAATACTCCAAGTAACCAAGATATTTCTGATACTGCAGCTGCCATGCTTCTATACTCAGCTTCTGCTGAACTTCTGCTGACTGTATGTTGCTTCTTGGATTTCCAAGAAATGAGTGAATTCCCTAGCTTGATTACATACCCTGTCACTGACCTTCTTGTGTTTGGACATGATGCCCAGTCTGAGTCACAGAATGCCTCCATTTCATTGCTGTCTTCACTGCTAAGTAGTATCCCTTGTCCTGGACATCCTTTAATATATCTAACCAATCTCAATGCAGCTTCCCAGTGAGACACCTTAGGTTTCTGCATGAACTGTGATAAAACTTGTACAGCAAAACATATATCAGGCCTAGTAGTTGTTAAGTATAACAATCTACCAATTAATCTCTGATATGCAGTAACATTTGCATATAAAGGATCATCTGTCTTTGCAGTGGCTTCATCATATTCAACAGTAGTTAATTTGACACCTGATTCTAAAGGTGTGCTTGCTGGTTTTGACCCTCCAAGACCACAGTCAGAAATCAACTCTAGTGCATACTTTCTTTGGCTAAGAATAATACCATTTCTTGATCTTAGTACTTCAATACCAAGAAAATACTTTAGATCACCAAGATCTTTCATTTTGAAGTTACTATGTAATGTAGTCTTTAGATCCTCAATTAGAACACTGCTATTTCCAGTTATAAGAAGATCATCTACATAGATCAACACTGCTGCAATATCATCACCAACTATCTTTGTGAAAAGAGAATGATCATAAGAACTTTGAGAATAACCAGCAGTAACTAGAGCCTCAGTTAGCTTAAGGTTCCATTGCCTGGAAGTTTGTTTCAAGCCATATAAAGATTTCAACAATTTACACACTTTGTTCTCCCCCTGCCTCTGAAATCCTTGAGGAAAGTCCATGTATACTTCTTCATTGAGATCACCTTGAAGGAAAGCATTATGAACATCCATTTGAAAAAGAGGCCAACCATGGGATGCTGCAACACTAATCACAGTTCTCACTGTGACCATCTTAGCTACTGGAGAAAATGTTTCATGATAGTCCAACCCTTCTTGTTGATTATAGCCTTTGGCAACTAACCTTGCCTTGTACCTTTCCACCTCACCATTAGCTTTAAGTTTAACTTTATAAACCCATTTTGAACCAATAGGATGTTTACCAGATGGCAAATCTACTATTGCCCAGGTATTGTTTTGTTCTAAAGCAGCTACTTCAGACTGCATTGCATCCACCCATTGTTGGTGTTTGGAGGCTTCCTTAAAGCTGGTGGGTTCCACTATAACTGAGAACCCCTTGATAAAGTTTTGATAAGATGGTGTCAAGAGTTCATATGACAAATTATTAGCAATAGGATATGAACAAGTCATATTAGACTTAGTTGAAATTATGTAATCTTTATGCCAAAGAGGAGGCCTAGTATTTCTAGCAGTTCTTCTAGCAGGTGTAAGATCACCATCATCTGTGATTTCACTATGTTGTGGCTCCAGCAGATTATTCTCTAAAGAAGCATCAACTTCTGATTGTATAGGATTGATCTCCTCAACATGATCTTCAATAGAATCTACAGGATTTGAAGGTATATTATCATCTGCATGATCAAACATATCCATTTGTATAGGAGCAGTATAATCTGTGGTTGATGATACTTCTTTTGTGATAACATCTTTGAAAGGAAATGAATCTTCCATGAATGTAACCTCCCTGCTCACTGATATGACATGAGTCTCCAAATCCATGACTTTATATCCTTTTTGTGTCTCTGAGTACCCAATGAAGACTGATCTTGTTGCTCTTGGAGCAAATTTATCTCTTCTTGGCAAAACTGATACAAAACATAAACATCCAAACACCCTCAAATGTTCTAGATTAGGTGCTCGTTTATAAAGAAGTTCATATGGTGACTTCCCTTGTAATACAGTTGTAGGCATTCTGTTTATCAGATAAGCTGCAGTTTTAACACAATTTCCCCAAAATCTGATAGGAATTTCACTGTGAAATCTCAGTGCTCTGGCTACATTTAATATGTGTCTATGCTTTCTTTCAACAACACTATTTTGTTGAGGTGTATAAGCACATGAACTCTGATGAACTATTCCAAGAGAAGAAAACAAAACACTGCATTTAGAGTTAAAAAACTCAGTTCCATTATCAGTTCTCACAACTTGAACTTTAACACCAAATTGTGTATTAACCATCAACATAAAGTCTTTCAATATAATGTGCACATCTGATTTGTGTTGAACTAGACAAAGCCAAGTAAATCTACTGAAATCATCAACAATTGTCACAAAATACTGCTTATTATCATGTGTAAGAACTTTGTAAGGTCCCCAGAGATCAACATGAAGAAGTTGAAAATTATGAGTTGACTTAGAATTACTTGTAGGAAAACTCAATCTACTTTGTTTGGCCACTGGACATATTTGACAGCAATTGTATGTGGAGATGTTGAAGTACTTCTTAAGAGAAATTATCTGTTCCATAACTTTGATAGGTGGATGTCCAAGTCTGAAATGCCACAAGTCAGCCAAACTTGCACCCTTTTTTGATGTTGAAGCTGAATTAACTCTTGCTCTAACAGTACTTTGTAGTAGGTATAAACCATCAATCTCTTTACCAATCCCAATCACCTTGCCATTGTAAAGTTCCTGCAGTACACAAAAGTGAGGAAAGAAACTCACACTACAAGATAATTCCTTGGTGAGTTTTGCCACAGATAGTAAATTGAACTTAAAATCAGGTACATGAAGTACATTCTTCACTGTCTGATTTCCAAAAATGACTGAATTGCCTGTATGTTTCACTTGAGCTCTGCTTCCTGTTGGCAACTGAACTGTACTCGAGTATTCATTCTTTGTGTTTTTCAATTCATACATGAGCTCCTCATATGAAGCAACATGATGAGTAGCTCCTGAATCAATTATCCAGTCATATGCAGATGATTTAGTCTGTAAAGAAACATTACCTGTCAAGTTAGCCTTGCAGTCACTTGGTTCTTTGTTGTGTAACAGATTCTTCATTTGATTGTATTCTTTCTTTGTGAATTCAGATTCCTCCCTCTGTTTATCTATTGAAGCATTGTTAGCATATGGCTTAAAGTTTCCAGAATTTCCAGTGTTGTTGTAAGTATTACTACTGTAAGAACCATGTGATCTAAAACCTTCATTGTTGTTCTGGTATGATCCAGTAGAATCTGATTGTTTCCTCTTACTCTTGAAGTCAGAAGGATATCCTACCAGCCTATAGCACTTTTCAGTTACATGATTTTTGAAACCACAGATCTCACATCCAGTATTGTTATTGCCTGGCAATACTTTCTTCCCTTTGAATCCTTGTCCTTGTCCTTTTCCTGCCATCATAGTAAGTGGTTCTTTATTTGAATCCACAACACCTAATACTCTTTGGCTTTCCTCTTGAATTACAGTTGCATAAGCTTGGTTAATTGTAGGTACCTCACTTTTCAGCAACAAATCACTTCTCACATGACTGAAAGTCTCATTTAACCCCATCAAGAACATCATCAATCTTTGTTGATGTAAATGCTCAATGTAAGGCTTAGCATCATCACATTTACATGATGGTGAAGGCACCAATACATCATACTCATCCCATAAATCCCTCAATTTAGAATAATACTCTGTTACAGAATCCGTACCTTGCTTTAATGTGGCTACTTCTGTCCAAAGTTGATAGATCCTAGTAAGATTAGATTTATCAAACCTCTCCTTGAAATCTTCCCAAACTCGTTTTGCATTTGATGCATATACTATTGTTGTTAACAAATTGTTTGCTACTGTGCTGCTAATCCATGAAAGAACCACTGCATTGCACCTTTCCCATTGAACTGCTAATTCATCCTTGTACATACTCTTTAAACAGGTTCCATCTATGAAGCCTATCTTGTTCTTCACCAACAGTGCCAATCTCATCGATCTGCTCCAAAGACCATAATTCTCAGGTCCTGTAAGCTTTGTTGTGATCAATGCAACACCAGGCGTGTCTGAAGGCTGCAGATAGAGTGGATGATTGTGTCCAAGAGTTGCTACAGTAAGTTCTGCCATGGCTATAATCTGATCTTCAAAAATTACTTCGCGGAAAGAAAAAATTCGAAATCAAATTAGTCCTAATTACGCCCGCTCTGATACCATGATAGTTTTTATATATCATGGAGTTAATACTCCATTGTTGCAGGTTACTGCAATATCAAAGAAATGACAGTAAGAAACTTGAAGAAGAAAGAGAAGAAGCTAATAGATTTTCTATATTTCAAGTATACAATAATGACTCCTATTTATAGGGATCATGTCATTTCTATTTGATCACATTTTTGGAGTGGAAGTTAGTTACAACTAACTACAAGTTGCCTAACTACTTCCATGACTCCTAACTAACTAATTCTAACAAACCTAACTACCTATTGGACTTATGTAATTCCAATAAAATGGAAGGTCCTTTAGGAAGAAGCATCACACAACTTAAGCAATTAGTTGTCCTCAATGTTGCTCGAAACTCTTTCAATGACTCGATTACAGAACATTTCTTGAATTTAACTGATTTGAGAGTGTTAGACTTGTCATCCAACTCGTTTATCTTCAACGTAAGTGCAACTTGGATGCCTCGTTTCCAACTTGAGTTTATAAGCCTGCAGTCTTGCGGACTTGGTGCACGATTTCCTCAGTGGCTTCAGACACAGAAAGAGTTGTCATTTATTGATATCTCTCGCGTTAACATCTCAGGACATGTGCCTGATTGGTTCTGGAATTTTTCTGCTAAGGTTAATCACATAGACCTTTCGCAGAACTATATCGGAGGACAAGTCCCTGATTTTACAGAGAGAGTTCATCTTACAAAATTGGACCTGAGTGACAACAATTTTCATGGTCCTTTGCCTCATTTTTCACCCAATATGATGACACTGATTTTGGCAAGTAACTCCTTTAACGGTACTATCGCCCCTGTATGTGAATCGCTTGTCATGAATAACTCTCTCAGTCTTCTAGACCTATCCTCAAATTCTCTATCAGGACAACTTTTAGACTGTTGGAGATATGGGAAGAATCTGCAAGGATTGAATTTAGGCCATAATGATCTATCAGGGGAGATACCTCGTTCCATCGGAGATCTTGCCAATCTCTTCTTTCTGCAATTGCAAAACAACAAGTTCTCCAAAAATATGCCTTCATCATTGAAGAACATAAGTGCACTAAAAATTCTTGATGTTTCTGAAAATAGTTTATCTGGAAAGATACCAAATTGGTTAGGAGAGAGTTTAAATACTCTAGAGATTCTTAAATTAAGCGGAAACATGTTTGACGGAACCATTCCTAGGGAGATTTGCCAGCTTAAATACTTGTATACTTTGGACCTTAGTTCCAATGCACTATCAGGAGTCATTCCAAGGTGTGTTGATAATCTCCGCACCATGTCCGGAGAAGAGGAGGCTCCTTCCTTTACTCATGGACCCTATGCAGATTACAGGGTTCAAGGAAGGATCGTTTTAAAGGGATACAGTTACGACATCTTTTTTCACTGGTCCTACGTAGTAATTGATCTATCAGACAATCATTTATCAGGGGAAATTCCCGAGGAAATCGCCAGCCTTACTGCACTGAGGAGCTTGAATTTATCATGGAATCATTTCACAGGAGCAATTCCACGTTACATTCACAAAATGCAGATTTTGGAATTTCTTGATCTTTCCAGGAATAAGCTGTCATGTACATTTCCTCCCGATATCATACAACTTCCACTTCTTGTGTTTGTGAATGTTTCTTTCAATGATTTGACAGGAGAAGTTCCACTTGGAAAACAATTTAACACCTTTGAGAATAGTTCTTATATTGGAAATCCAAACTTGTGCGGAGCTCCACTCTCACGAGTCTGCTCGGATAATATACATGAGGACATGATTGAC</genome_strand>
        <mrna_strand>TTCATCAAAAATTTTGTCTAACAAATTTCACTAAAACTTATGGAAAGTGTAGCTATTCTTTCCCTTCTCCTTGTTGTTGTTATTCCATATGGATTTTCTTGTGTCCAAACTTGTGAAATTCACTGCATTGAAGGTGAAAAAAATGCTCTTATAAAGTTCATCCAGGGCTTCAAGAATTCGTCACAGAACATGTTGTGGCTTGACGAAAATTGCTGTCAATGGAAAGGTGTTAAATGCGATAACAAAACAGGGCATGTGATCACTCTTGATCTGCAAAATCAATTCTTACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGTTCCACTTGGAAAACAATTTAACACCTTTGAGAATAGTTCTTATATTGGAAATCCAAACTTGTGCGGAGCTCCACTCTCACGAGTCTGCTCGGATAATATACATGAGGACATGATTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E217990" ref_strand="+" ref_description="SGN-E217990 	[cLEL-23-F4]">
      <seq>tttttttttttttttttaaaactgcagcttatctgataaacagaatgcctacaactgtattacaaggaagtcaccatatgaacttctttatgaacgagcacctaatctagaacatttgagggtgtttggatgtttatgttttgtatcagttttgccaagaagagataaatttgctccaagagcaacaagatcagtcttcattgggtactcagagacacaaaaaggatataaagtcatggatttggagactcatgtcatatcagtgagcagggaaattacattcatggaagattcatttcctttcaaagatgttatcacagaagaagtatcatctgctcccatacaaatggatatgtttgatcatgcagatgataatataccttcaaattctgtagattctattgaagatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="18636" stop="19576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18926" g_stop="19353" g_length="428"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="412" r_length="412" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E217990" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>428</cumulative_length_of_scored_exons>
        <coverage percentage="1.039" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E217990" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18926" e_stop="19353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGGGGAAATTGTGTTAAAACTGCAGCTTATCTGATAAACAGAATGCCTACAACTGTATTACAAGGGAAGTCACCATATGAACTTCTTTATAAACGAGCACCTAATCTAGAACATTTGAGGGTGTTTGGATGTTTATGTTTTGTATCAGTTTTGCCAAGAAGAGATAAATTTGCTCCAAGAGCAACAAGATCAGTCTTCATTGGGTACTCAGAGACACAAAAAGGATATAAAGTCATGGATTTGGAGACTCATGTCATATCAGTGAGCAGGGAGGTTACATTCATGGAAGATTCATTTCCTTTCAAAGATGTTATCACAAAAGAAGTATCATCAACCACAGATTATACTGCTCCTATACAAATGGATATGTTTGATCATGCAGATGATAATATACCTTCAAATCCTGTAGATTCTATTGAAGATCAT</genome_strand>
        <mrna_strand>TTTTTTTTTTTTTTTTTAAAACTGCAGCTTATCTGATAAACAGAATGCCTACAACTGTATTACAA-GGAAGTCACCATATGAACTTCTTTATGAACGAGCACCTAATCTAGAACATTTGAGGGTGTTTGGATGTTTATGTTTTGTATCAGTTTTGCCAAGAAGAGATAAATTTGCTCCAAGAGCAACAAGATCAGTCTTCATTGGGTACTCAGAGACACAAAAAGGATATAAAGTCATGGATTTGGAGACTCATGTCATATCAGTGAGCAGGGAAATTACATTCATGGAAGATTCATTTCCTTTCAAAGATGTTATCACAGAAGAAGTATC--------------AT-CTGCTCCCATACAAATGGATATGTTTGATCATGCAGATGATAATATACCTTCAAATTCTGTAGATTCTATTGAAGATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E284160" ref_strand="+" ref_description="SGN-E284160 	[cLER-13-N8]">
      <seq>ttttttaaggggattaagaacttcaaaatctaccattatgtaattaaaatatttatattcaatcaaattttaatttagtaaagggacaaaatgacaattcgacttttcacttgtaataatatatgatctctgcagcaaaacttcttccttggagcaaatgaacaatgtagtggggaatgaattaactcagcaggcttccaaagcagcagatgcgtactacttttcagttttttgttcttgactaatccttgctaacccacctttgaccacgaacttgaatagcaccaaagttctgatcactgctactttctccaccactttctgcactcgtatattcagattttcgacggtgcttcttcttcgtagaagttccactatcgcttacgcttccgttcaaaagaggatcatcgatcccacgtatgactcttcttgttggagatgatgaggcaaaccactatcgtcctttgtttttctccctttgtcatgcttctttatgttctgagagatttcatgtaatttttgtattcctttctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="33524" stop="32392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33228" g_stop="32692" g_length="537"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="536" r_length="536" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E284160" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E284160" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33228" e_stop="32692"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGATAAAGGGGATTAAGAACTTCAAAATCTACCATTATGTAATTAAAATATTTATATTCAATCAAATTTTAATTTAGTAAAGGGACAAAATGACAATTCGACTTTTCACTTGTAATAATATATGATCTCTGCAGCAAAACTTCTTCCTTGGAGCAAATGAACAATGTAGTGGGGAATGAATTAACTCAGCAGGCTTCCAAAGCAGCAGATGCGTACTACTTTTCAGTTTTTTGTTCTTGACTAATCCTTGCTAACCCACCTTTGACCACGAACTTGAATAGCACCAAAGTTCTGATCACTGCTACTTTCTCCACCACTTTCTGCACTCGTATATTCAGATTTTCGACGGTGCTTCTTCTTCGTAGAAGTTCCACTATCGCTTACGCTTCCGTTCAAAAGAGGATCATCGATCCCACGTATGACTCTTCTTGTTGGAGATGATGAGGCAACACCACTATCGTCCTTTGTTTTTCTCCCTTTGTCATGCTTCTTTATGTTCTGAGAGATTTCATGTAATTTTTGTATTCCTTTCTCTA</genome_strand>
        <mrna_strand>TTTTTTAAGGGGATTAAGAACTTCAAAATCTACCATTATGTAATTAAAATATTTATATTCAATCAAATTTTAATTTAGTAAAGGGACAAAATGACAATTCGACTTTTCACTTGTAATAATATATGATCTCTGCAGCAAAACTTCTTCCTTGGAGCAAATGAACAATGTAGTGGGGAATGAATTAACTCAGCAGGCTTCCAAAGCAGCAGATGCGTACTACTTTTCAGTTTTTTGTTCTTGACTAATCCTTGCTAACCCACCTTTGACCACGAACTTGAATAGCACCAAAGTTCTGATCACTGCTACTTTCTCCACCACTTTCTGCACTCGTATATTCAGATTTTCGACGGTGCTTCTTCTTCGTAGAAGTTCCACTATCGCTTACGCTTCCGTTCAAAAGAGGATCATCGATCCCACGTATGACTCTTCTTGTTGGAGATGATGAGGCAA-ACCACTATCGTCCTTTGTTTTTCTCCCTTTGTCATGCTTCTTTATGTTCTGAGAGATTTCATGTAATTTTTGTATTCCTTTCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E218177" ref_strand="-" ref_description="SGN-E218177 	[cLEL-23-N18]">
      <seq>atacgtgggatcgatgatcctcttttgaacggaagcgtaagcgatagtggaacttctacgaagaagaagcaccgtcgaaaatctgaatatacgagtgcagaaagtggtggagaaagtagcagtgatcagaactttggtgctattcaagttcgtggtcaaaggtgggttagcaaggattagtcaagaacaaaaaactgaaaagtagtacgcatctgctgctttggaagcctgctgagttaattcattccccactacattgttcatttgctccaaggaagaagttttgctgcagagatcatatattattacaagtgaaaagtcgaattgtcattttgtccctttactaaattaaaatttgattgaatataaatattttaattacataatggtagattttgaagttcttaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="32508" stop="33515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32808" g_stop="33214" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="407" r_length="407" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="408" polyA_stop="423"/>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E218177" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>407</cumulative_length_of_scored_exons>
        <coverage percentage="0.962" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E218177" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32808" e_stop="33214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACGTGGGATCGATGATCCTCTTTTGAACGGAAGCGTAAGCGATAGTGGAACTTCTACGAAGAAGAAGCACCGTCGAAAATCTGAATATACGAGTGCAGAAAGTGGTGGAGAAAGTAGCAGTGATCAGAACTTTGGTGCTATTCAAGTTCGTGGTCAAAGGTGGGTTAGCAAGGATTAGTCAAGAACAAAAAACTGAAAAGTAGTACGCATCTGCTGCTTTGGAAGCCTGCTGAGTTAATTCATTCCCCACTACATTGTTCATTTGCTCCAAGGAAGAAGTTTTGCTGCAGAGATCATATATTATTACAAGTGAAAAGTCGAATTGTCATTTTGTCCCTTTACTAAATTAAAATTTGATTGAATATAAATATTTTAATTACATAATGGTAGATTTTGAAGTTCTTA</genome_strand>
        <mrna_strand>ATACGTGGGATCGATGATCCTCTTTTGAACGGAAGCGTAAGCGATAGTGGAACTTCTACGAAGAAGAAGCACCGTCGAAAATCTGAATATACGAGTGCAGAAAGTGGTGGAGAAAGTAGCAGTGATCAGAACTTTGGTGCTATTCAAGTTCGTGGTCAAAGGTGGGTTAGCAAGGATTAGTCAAGAACAAAAAACTGAAAAGTAGTACGCATCTGCTGCTTTGGAAGCCTGCTGAGTTAATTCATTCCCCACTACATTGTTCATTTGCTCCAAGGAAGAAGTTTTGCTGCAGAGATCATATATTATTACAAGTGAAAAGTCGAATTGTCATTTTGTCCCTTTACTAAATTAAAATTTGATTGAATATAAATATTTTAATTACATAATGGTAGATTTTGAAGTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E227422" ref_strand="-" ref_description="SGN-E227422 	[cLEL-30-M16]">
      <seq>cgtaagcgatagtggaacttcttcgaagaagaagcaccgtcgaaaatctgaatatacgagtgcagaaagtggtggagaaagtagcagtgatcagaactttggtgctattcaagttcgtggtcaaaggtgggttagcaaggattagtcaagaacaaaaaactgaaaagtagtacgcatctgctgctttggaagcctgctgagttaattcattccccactacattgttcatttgctccaaggaagaagttttgctgcagagatcatatattattacaagtgaaaagtcgaattgtcattttgtccctttactaaattaaaatttgattgaatataaatattttaattacacaatggtagattttgaagttcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="32543" stop="33515"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="32843" g_stop="33214" g_length="372"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="372" r_length="372" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="373" polyA_stop="389"/>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E227422" ref_strand="-">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>372</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E227422" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="32843" e_stop="33214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGTAAGCGATAGTGGAACTTCTACGAAGAAGAAGCACCGTCGAAAATCTGAATATACGAGTGCAGAAAGTGGTGGAGAAAGTAGCAGTGATCAGAACTTTGGTGCTATTCAAGTTCGTGGTCAAAGGTGGGTTAGCAAGGATTAGTCAAGAACAAAAAACTGAAAAGTAGTACGCATCTGCTGCTTTGGAAGCCTGCTGAGTTAATTCATTCCCCACTACATTGTTCATTTGCTCCAAGGAAGAAGTTTTGCTGCAGAGATCATATATTATTACAAGTGAAAAGTCGAATTGTCATTTTGTCCCTTTACTAAATTAAAATTTGATTGAATATAAATATTTTAATTACATAATGGTAGATTTTGAAGTTCTTA</genome_strand>
        <mrna_strand>CGTAAGCGATAGTGGAACTTCTTCGAAGAAGAAGCACCGTCGAAAATCTGAATATACGAGTGCAGAAAGTGGTGGAGAAAGTAGCAGTGATCAGAACTTTGGTGCTATTCAAGTTCGTGGTCAAAGGTGGGTTAGCAAGGATTAGTCAAGAACAAAAAACTGAAAAGTAGTACGCATCTGCTGCTTTGGAAGCCTGCTGAGTTAATTCATTCCCCACTACATTGTTCATTTGCTCCAAGGAAGAAGTTTTGCTGCAGAGATCATATATTATTACAAGTGAAAAGTCGAATTGTCATTTTGTCCCTTTACTAAATTAAAATTTGATTGAATATAAATATTTTAATTACACAATGGTAGATTTTGAAGTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E547361" ref_strand="+" ref_description="SGN-E547361 	[TUS-71-D6]">
      <seq>ctcctctcattcatcgtctcgttaatgaagagagaaggtttagacaagggcgcaacattttccctttaataacaataacaatacttgtttttcgttgactatcaacctatcacaaccctcctccgcgggataaacaacaatttatgttgaggataggtatatatcaagactaatttgtccattgagaaaaaaaaaaggaggggaaattgaaaaatcaaccaaaaatgaatgacttattctctaattcgtttaaaaagtatcaggaccttaaaaaacagacagaagtagatgatttggagggtggtcaaggtggccaaccaggtactgaaagtattgatcttgctaaattctttgaagatgtagaaaatgtgaaagaagatatgaaagatgtcgaaaaatttcataaaaaattacaagaatcaaatgaagagagcaaacttgtgcataatgccaagactgtgaaagaaataaggtctaggatggattcagatgtgtcacaggtcctaaaacgcgttaagatgatcaaaggaaaattggaagccctcgaacgatccaatgcagctcataggaagatctcggggtgtggaccaggttcttctgcagatcgaacaaggacttctgtagttagtggtttaggaaagaaattaaaagtactcatggatgattttcaaggattgaggacaagaatgaatgatgaatataaggaaacagttgcnagaaggtactttactgtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="33704" stop="35036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34004" g_stop="34736" g_length="733"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E547361" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547361" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34004" e_stop="34736"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCCTCTCATTCATCGTCTCGTTAATGAAGAGAGAAGGTTTAGACAAGGGCGCGACGTTTTCCCTTTAATAACAATAACAATACCTGTTTTTTCGTTGACTATCAACCTATCACAACCCTCCTCCGTGGGATAAACAACAATTTATGTTGAGGATAGGTACATAACAAGACTAATTTGTCCATTGAG---AAAAAAAGGAGGGGAAATTGAAAAATCAACCAAAAATGAATGACTTATTCTCTAATTCGTTTAAAAAGTATCAGGACCTTAAAAAACAGACCGAAGTAGATGATTTGGAGGGTGGTCAAGATGGCCAACCAGGTACTGAAAGTATTGATCTTGCTAAATTCTTTGAAGATGTAGAAAATGTGAAAGAAGATATGAAAGATGTCGAAAAATTTCATAAGAAATTACAAGAATCAAATGAAGAGAGCAAACTTGTGCATAATGCCAAGACTGTGAAAGAAATAAGGTCTAGGATGGATTCAGATGTGTCACAGGTCTTAAAACGCGTTAAGATGATCAAAGGAAAATTGGAAGCCCTCGAACGATCCAATGCAGCTCATAGGAAGATCTCGGGGTGTGGACCAGGTTCTTCTGCAGATCGAACAAGGACTTCTGTAGTTAGTGGTTTAGGAAAGAAATTAAAAGTACTCATGGATGATTTTCAAGGATTGAGGACAAGAATGAATGATGAATATAAGGAAACAGTTGCAAGAAGGTACTTTACTGTGA</genome_strand>
        <mrna_strand>CTCCTCTCATTCATCGTCTCGTTAATGAAGAGAGAAGGTTTAGACAAGGGCGCAACATTTTCCCTTTAATAACAATAACAATACTTG-TTTTTCGTTGACTATCAACCTATCACAACCCTCCTCCGCGGGATAAACAACAATTTATGTTGAGGATAGGTATATATCAAGACTAATTTGTCCATTGAGAAAAAAAAAAGGAGGGGAAATTGAAAAATCAACCAAAAATGAATGACTTATTCTCTAATTCGTTTAAAAAGTATCAGGACCTTAAAAAACAGACAGAAGTAGATGATTTGGAGGGTGGTCAAGGTGGCCAACCAGGTACTGAAAGTATTGATCTTGCTAAATTCTTTGAAGATGTAGAAAATGTGAAAGAAGATATGAAAGATGTCGAAAAATTTCATAAAAAATTACAAGAATCAAATGAAGAGAGCAAACTTGTGCATAATGCCAAGACTGTGAAAGAAATAAGGTCTAGGATGGATTCAGATGTGTCACAGGTCCTAAAACGCGTTAAGATGATCAAAGGAAAATTGGAAGCCCTCGAACGATCCAATGCAGCTCATAGGAAGATCTCGGGGTGTGGACCAGGTTCTTCTGCAGATCGAACAAGGACTTCTGTAGTTAGTGGTTTAGGAAAGAAATTAAAAGTACTCATGGATGATTTTCAAGGATTGAGGACAAGAATGAATGATGAATATAAGGAAACAGTTGCNAGAAGGTACTTTACTGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E547360" ref_strand="-" ref_description="SGN-E547360 	[TUS-71-D6]">
      <seq>tgatcaaaggaaaattggaagccctcgaacgatccaatgcagctcataggaagatctcggggtgtggaccaggttcttctgcagatcgaacaaggacttctgtagttagtggtttaggaaagaaattaaaagtactcatggatgattttcaaggattgaggacaagaatgaatgatgaatataaggaaacagttgcaagaaggtactttactgtgacaggagagaaagctgacgatgggttaattgagaatttgatatcaagtggggagagcgagtctttcctccaaaaggcaatccaggaacaaggtaggggtcagattatggacacaatttccgaaatacaagaaagacatgatgctgtgaaagagattgagaagaatttgattgagctacaccaaatatttttagacatggctgcattggtggaagcacaagggcaacaattaaatgatattgaaagtcatgtggcacatgcaagttcctttgttaggaggggcacagagcaattacaagaagctagggagattcaaaaaagttcaagaaagtgtgcttgttttgctgttttccttatcattttgcttatcattcttcttactttcccactatggtggccattagttgctagcaaaatattataagatgacctttttttttttgggcaatatgactattgtttgtaagaattttattcttgtattcattgtcaacaatttgttttctttgacattgtatttatagaagcaatttttgtcacatcaatggttacatatatagacatgtttcaagacaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="34221" stop="35694"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34521" g_stop="34826" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="306" r_length="306" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34827" i_stop="34911" i_length="85">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34912" g_stop="35404" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="307" r_stop="799" r_length="493" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E547360" ref_strand="-">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>799</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E547360" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="34521" e_stop="34826"/>
          <exon e_start="34912" e_stop="35404"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATCAAAGGAAAATTGGAAGCCCTCGAACGATCCAATGCAGCTCATAGGAAGATCTCGGGGTGTGGACCAGGTTCTTCTGCAGATCGAACAAGGACTTCTGTAGTTAGTGGTTTAGGAAAGAAATTAAAAGTACTCATGGATGATTTTCAAGGATTGAGGACAAGAATGAATGATGAATATAAGGAAACAGTTGCAAGAAGGTACTTTACTGTGACAGGAGAGAAAGCTGACGATGGGTTAATTGAGAATTTGATATCAAGTGGGGAGAGCGAGTCTTTCCTCCAAAAGGCAATCCAGGAACAAGGTATTCATGTTTATCCTGATTTTCTTATCATATTTCGTATTTTCTCTCTCTTCTATTAATTTCTGCTTTGGATCTTAATTAACAGGTAGGGGTCAGATTATGGACACAATTTCCGAAATACAAGAAAGACATGATGCTGTGAAAGAGATTGAGAAGAATTTGATTGAGCTACACCAAATATTTTTAGACATGGCTGCATTGGTGGAAGCACAAGGGCAACAATTAAATGATATTGAAAGTCATGTGGCACATGCAAGTTCCTTTGTTAGGAGGGGCACAGAGCAATTACAAGAAGCTAGGGAGATTCAAAAAAGTTCAAGAAAGTGTGCTTGTTTTGCTGTTTTCCTCATCATTTTGCTTATCATTCTTCTTACTTTCCCACTATGGTGGCCATTAGTTGCTAGCAAAATATTATAAGATGACCTTTTTTTTCTTGGGCAATATGACTATTGTTTGTAAGAATTTTATTCTTGTATTCATTGTCAACAATTTGTTTTCTTTGACATTGTATTTATAGAAGCAATTTTTGTCACATCAATGGTTACATATATAGACATGTTTCAAGACACCTATGTATT</genome_strand>
        <mrna_strand>TGATCAAAGGAAAATTGGAAGCCCTCGAACGATCCAATGCAGCTCATAGGAAGATCTCGGGGTGTGGACCAGGTTCTTCTGCAGATCGAACAAGGACTTCTGTAGTTAGTGGTTTAGGAAAGAAATTAAAAGTACTCATGGATGATTTTCAAGGATTGAGGACAAGAATGAATGATGAATATAAGGAAACAGTTGCAAGAAGGTACTTTACTGTGACAGGAGAGAAAGCTGACGATGGGTTAATTGAGAATTTGATATCAAGTGGGGAGAGCGAGTCTTTCCTCCAAAAGGCAATCCAGGAACAAG.....................................................................................GTAGGGGTCAGATTATGGACACAATTTCCGAAATACAAGAAAGACATGATGCTGTGAAAGAGATTGAGAAGAATTTGATTGAGCTACACCAAATATTTTTAGACATGGCTGCATTGGTGGAAGCACAAGGGCAACAATTAAATGATATTGAAAGTCATGTGGCACATGCAAGTTCCTTTGTTAGGAGGGGCACAGAGCAATTACAAGAAGCTAGGGAGATTCAAAAAAGTTCAAGAAAGTGTGCTTGTTTTGCTGTTTTCCTTATCATTTTGCTTATCATTCTTCTTACTTTCCCACTATGGTGGCCATTAGTTGCTAGCAAAATATTATAAGATGACCTTTTTTTTTTTGGGCAATATGACTATTGTTTGTAAGAATTTTATTCTTGTATTCATTGTCAACAATTTGTTTTCTTTGACATTGTATTTATAGAAGCAATTTTTGTCACATCAATGGTTACATATATAGACATGTTTCAAGACAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E265170" ref_strand="+" ref_description="SGN-E265170 	[cLEI-2-K24]">
      <seq>ctcacttctcagaacaaagctatggctacctcgtggacaatggcggctcgtcgagcggcagccttcactcgaatcccctcctcaaccactgcgtctcttgttcagcgccgcggccttgccggcgcagctgatcatcatgggcctcctaaggtcaattgctggaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="36242" stop="37167"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36542" g_stop="36671" g_length="130"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="130" r_length="130" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36672" i_stop="36831" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36832" g_stop="36867" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="131" r_stop="166" r_length="36" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E265170" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>166</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36542" e_stop="36671"/>
          <exon e_start="36832" e_stop="36867"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTTCTCAGAACAAAGCTATGGCTACCTCGTTGACAATGGCGGCTCGTCGAGCGGCAGCCTTCACTCGAATCCCCTCCTCAACCACTGCGTCTCTTGTTCAGCGCCGCGGCCTTGCCGGCGCAGCTGGTAAATGTTCTCTTATACTCTCAATTTTTTCATCCGATTCATTCAGATGTAGTAGAGTTCGTTGAAGGATTCATTTGCTTTAATGTTGATCCGTTAATATAAAATCATATGCTTTTTTGTTTTTAATTTATTAATGATATTGAAATGTGAACAATTCCAGATCATCATGGGCCTCCTAAGGTCAATTGCTGGAAAG</genome_strand>
        <mrna_strand>CTCACTTCTCAGAACAAAGCTATGGCTACCTCGTGGACAATGGCGGCTCGTCGAGCGGCAGCCTTCACTCGAATCCCCTCCTCAACCACTGCGTCTCTTGTTCAGCGCCGCGGCCTTGCCGGCGCAGCTG................................................................................................................................................................ATCATCATGGGCCTCCTAAGGTCAATTGCTGGAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E306432" ref_strand="+" ref_description="SGN-E306432 	[cLEX-13-P16]">
      <seq>tacctcgttgacaatggcggctcgtcgagcggcagccttcactcgaatcccctcctcaaccactgcgtctcttgttcagcgccgcggccttgccggcgcagctgatcatcatgggcctcctaaggtcaattgctggaaagaaccgatgaatcctggtcaatggaaggaagaacattttgtgattgcatctttgtccggttggggcttgcttttctttggtgcatacaagttattctctggaggcaagaagaacaaagaagagaacttggtgcaagcatcacaataaggtgggtatttacgtggcatcatactgaggttgggataatccaagtccataatcgagaagttctctctaataatacaacttattggacattcatttttcatttgatggattttcttatcattataaaattaccagagagcctgtgagctactaaatggtggacaaaagttggttgcatcaatactgcaatatactttttcttttgtatactatgataaatgaaactggtttttgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="36268" stop="40098"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36568" g_stop="36671" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="104" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36672" i_stop="36831" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36832" g_stop="36902" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="105" r_stop="175" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36903" i_stop="38268" i_length="1366">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38269" g_stop="38355" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="176" r_stop="262" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38356" i_stop="39538" i_length="1183">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39539" g_stop="39798" g_length="260"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="522" r_length="260" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E306432" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E306432" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36568" e_stop="36671"/>
          <exon e_start="36832" e_stop="36902"/>
          <exon e_start="38269" e_stop="38355"/>
          <exon e_start="39539" e_stop="39798"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACCTCGTTGACAATGGCGGCTCGTCGAGCGGCAGCCTTCACTCGAATCCCCTCCTCAACCACTGCGTCTCTTGTTCAGCGCCGCGGCCTTGCCGGCGCAGCTGGTAAATGTTCTCTTATACTCTCAATTTTTTCATCCGATTCATTCAGATGTAGTAGAGTTCGTTGAAGGATTCATTTGCTTTAATGTTGATCCGTTAATATAAAATCATATGCTTTTTTGTTTTTAATTTATTAATGATATTGAAATGTGAACAATTCCAGATCATCATGGGCCTCCTAAGGTCAATTGCTGGAAAGAACCGATGAATCCTGGTCAATGGAAGGAAGAACATGTACGTTATATATGAAGCTTTTTATAGCCTTTTTTTCTTGCTATTGTCTGTTCAAAAGGAGCAAACTTTTTTTTAGGCGTTTAACAAATTAATGCTTGTGCAAGTTTGGCAATTGCAACTCGAAATATCATACATACAATTTTTTCTTTTCCTGACTAAGCTAGCAATATGTATCAGCTAACTCTGTCCACCAAATCACCTAGTGTTTTGTCCCTACTGCGATTTGAGGCGTACACCTCAGGGTGCTCAACTCACTTCATTGACAAAAAGGTCACGCCTTTGGGTGCATTTCGATCTAAACTTATTTTCTCAAAAAGAGAAGTTATCATATGATGATATATTTGCTTTCAACAAATGCTATAACAATATTGTATGTTCATGTCTTCTCTTAATAAAATAATGCTAAACAATGTTATTATGTTCATTTCTTCTTGTATTAAAATAATTGTACAAAATCAAACTTCAGATTTTACTATTAGTGGAATCATAATCTGATTTCCAGAGTAACAAGGCGTTACATGAACTAGTACTATGGAGTACTAATAACAAAATAAAACTAGATTGTTTAACTGTGGAAGAACTGTAGGTATGGTGGTACATGTAATTAGGTCATTAAGATTTGGAGAATTGGTATATTATGCATTTAAAGTAGCCATATATCAAAGTCTTAGATTAAGACACTATCAAAAGAGCTACTCGAATAGTTCCTAGGCACATCCATTTCAAGGATGAGTAAGTACTAAACGAGTCTGTAAGAACAGACCTACTAACTACTAGTTGAAAGTTTTTCCAGAACACTTGATCTCCCTTTCAGTAGTCATAATGAGAATAAGAGAACTACCTATAGCTCACTATTGGAACAAAAAATGGATTTTTTCAAGAACGATATCTTAGTGCAACCGTACATATTATAACTCATCAGTGTTGTTGGTCATAATCTTGTTCAATCCTACTTTTGACGAACCTACTTAAGTACTTTTATTATATAAAGAACTGTATCACTTATCTTATATATATGATATGAGAAAGTATGTTTTTTTCCAAAATAAGTGAAGGGTTAGTTTGACGAATTTAAAAGAAACAAAATAGAGAATTGTGTTGTTGGTGCTTGTCTTTCTTGACGAAACTAAACCTGGATCAATTTTGTTCAAGTCCTTTCTGGTGTAAAACTAATTTAGTTTTAGCCGATTATGGACTCAAATGGATCATACTTGGCTACTCTAGAATCGTTAAACAGGAACAATTGTATGTATTATACCCGTATTAAGGATGTTCACAATCTCAGCCTAAGTAATGTTGTCTTTGGTGCTTTTGAATTATAAAATGCAAAGACATTTATGATTGCAAATGATGTTTTTTTTTGCAGTTTGTGATTGCATCTTTGTCCGGTTGGGGCTTGCTTTTCTTTGGTGCATACAAGTTATTCTCTGGAGGCAAGAAGAACAAAGAAGAGGTACTTGTCTGATCTGCTGAAAGTGCAAATACTGCTACCTATTTACTTATGACAAATTGTTTCAGGAAACATAGATGATCATAACTGCTTTAAGCAATGTTTTTCAATGGATTGCAATCTAGTTAGAATCTCAATCAAAACAAGGATGAGACTTGAGAATAGAGTGTCGTGTAAATTCAATGGACGTTTAAAATATCAAAAGGCTGCCTAAACAACTTTATATTTTGCTCCTATAATTGCTTTCTCCCTGATGGTCAGTGGTGCAAGGAGAAAGAAAACTATCAGAACATTTTGCTCAGATACAACTGTCAGCTAACCTTTTCCAAGCCAATTGATTAATCATGTAGCAGGCCACGTGAGTGGTCATTGCTATCAAGTGTAGTATTTTTTTTCATGCAATTTTTTTGGTACACAATTTCCATACCTCAAAGAATAGGTTTACATATGTTTTCCTGAGCCTCACTTAGCTTGCTGGTTCCAAGCTTAGATAAATTAGGAGGATCACAGTAGCTTGGCAGCCTGCTAAAAATATGCTGAAATCTGAATATTGGGTGACATGGATAAAGCCAATTGGTTGCAAATATTTCTTCTAGTTGGGCTCAAATGATTTGAGATTGAGGCATAGTTGTTGAAAAAATAAGTTTACCTATCAGTGAGGGAAGATAGAGAGTATCACCTTGAGATATATGATTAAAACTTAGAAGGGCTAGACATAGTGAGAACAAGTAAATAGCATCTCTACTTATATTTGTGTACCCAAACATCGAAAGATTTAGAGATCCAAGTCAAACTTATTAACAAAAAAAGAACTATACCTTAAACAAAGAGGATGTTAAGACAGCCTATAGGAGAGACTGGATAAAGTCAAACTTCAGAGGCAGAGGAGTAAAAAGCTACCTTAGGTTCAAATTAGAGAAATTTTGAGTTTTGAACAAGGACTCAAACTGATACATGAATAGAACAAGAATTTTCAGCTTATGCTAGATGGACCTTGATTTTATATGAAATTATATTTTAGGATACTAAAATTCTGTGACATAATGGCTGATCAATTATGTTTGAAGGAATTATTTGCTGATACAATTATCGGTTCTTTTTGAGTCTTCTTAAACCTTCCCTGCTTACGAGGATGAGTTTTTCTGTTTGTGAAGTATGACATCCTAGTTTATCCTTCTTTGTGCAGAACTTGGTGCAAGCATCACAATAAGGTGGGTATTTACGTGGCATCATACTGAGGTTGGGATAATCCAAGTCCATAATCGAGAAGTTCTCTCTAATAATACAACTTATTGGACATTCATTTTTCATTTGATGGATTTTCTTATCATTATAAAATTACCAGAGAGCCTGTGAGCTACTAAATGGTGGACAAAAGTTGGTTGCATCAATACTGCAATATACTTTTTCTTTTGTATACTATGATAAATGAAACTGGTTTTTGTC</genome_strand>
        <mrna_strand>TACCTCGTTGACAATGGCGGCTCGTCGAGCGGCAGCCTTCACTCGAATCCCCTCCTCAACCACTGCGTCTCTTGTTCAGCGCCGCGGCCTTGCCGGCGCAGCTG................................................................................................................................................................ATCATCATGGGCCTCCTAAGGTCAATTGCTGGAAAGAACCGATGAATCCTGGTCAATGGAAGGAAGAACAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATTGCATCTTTGTCCGGTTGGGGCTTGCTTTTCTTTGGTGCATACAAGTTATTCTCTGGAGGCAAGAAGAACAAAGAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTGGTGCAAGCATCACAATAAGGTGGGTATTTACGTGGCATCATACTGAGGTTGGGATAATCCAAGTCCATAATCGAGAAGTTCTCTCTAATAATACAACTTATTGGACATTCATTTTTCATTTGATGGATTTTCTTATCATTATAAAATTACCAGAGAGCCTGTGAGCTACTAAATGGTGGACAAAAGTTGGTTGCATCAATACTGCAATATACTTTTTCTTTTGTATACTATGATAAATGAAACTGGTTTTTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E540192" ref_strand="+" ref_description="SGN-E540192 	[TUS-60-F11]">
      <seq>tgacaatggcggctcgtcgagcggcagccttcactcgaatcccctcctcaaccactgcgtctcttgttcagcgccgcggccttgccggcgcagctgatcatcatgggcctcctaaggtcaattgctggaaagaaccgatgaatcctggtcaatggaaggaagaacattttgtgattgcatctttgtccggttggggcttgcttttctttggtgcatacaagttattctctggaggcaagaagaacaaagaagagaacttggtgcaagcatcacaataaggtgggtatttacgtggcatcatactgaggttgggataatccaagtccataatcgagaagttctctctaataatacaacttattggacattcatttttcatttgatggattttcttatcattataaaattaccagagagcctgtgagctactaaatggtggacaaaagttggttgcatcaatactgcaatatactttttcttttgtatactatgataaatgaaactggtttttgtcagtttgctttctaaggttcattgtcatcttgatcagttgtgtggaaattgtattcacattaatctgaagatccgcgcaccataatttgtagaagctctgcacatgcagtaagtctcaatgccactgagagttgtgttaatgaagatgtcatcaaacaattgtgtaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="36276" stop="40263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36576" g_stop="36671" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36672" i_stop="36831" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36832" g_stop="36902" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="167" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36903" i_stop="38268" i_length="1366">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38269" g_stop="38355" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="254" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38356" i_stop="39538" i_length="1183">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39539" g_stop="39972" g_length="434"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="688" r_length="434" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E540192" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540192" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36576" e_stop="36671"/>
          <exon e_start="36832" e_stop="36902"/>
          <exon e_start="38269" e_stop="38355"/>
          <exon e_start="39539" e_stop="39972"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAATGGCGGCTCGTCGAGCGGCAGCCTTCACTCGAATCCCCTCCTCAACCACTGCGTCTCTTGTTCAGCGCCGCGGCCTTGCCGGCGCAGCTGGTAAATGTTCTCTTATACTCTCAATTTTTTCATCCGATTCATTCAGATGTAGTAGAGTTCGTTGAAGGATTCATTTGCTTTAATGTTGATCCGTTAATATAAAATCATATGCTTTTTTGTTTTTAATTTATTAATGATATTGAAATGTGAACAATTCCAGATCATCATGGGCCTCCTAAGGTCAATTGCTGGAAAGAACCGATGAATCCTGGTCAATGGAAGGAAGAACATGTACGTTATATATGAAGCTTTTTATAGCCTTTTTTTCTTGCTATTGTCTGTTCAAAAGGAGCAAACTTTTTTTTAGGCGTTTAACAAATTAATGCTTGTGCAAGTTTGGCAATTGCAACTCGAAATATCATACATACAATTTTTTCTTTTCCTGACTAAGCTAGCAATATGTATCAGCTAACTCTGTCCACCAAATCACCTAGTGTTTTGTCCCTACTGCGATTTGAGGCGTACACCTCAGGGTGCTCAACTCACTTCATTGACAAAAAGGTCACGCCTTTGGGTGCATTTCGATCTAAACTTATTTTCTCAAAAAGAGAAGTTATCATATGATGATATATTTGCTTTCAACAAATGCTATAACAATATTGTATGTTCATGTCTTCTCTTAATAAAATAATGCTAAACAATGTTATTATGTTCATTTCTTCTTGTATTAAAATAATTGTACAAAATCAAACTTCAGATTTTACTATTAGTGGAATCATAATCTGATTTCCAGAGTAACAAGGCGTTACATGAACTAGTACTATGGAGTACTAATAACAAAATAAAACTAGATTGTTTAACTGTGGAAGAACTGTAGGTATGGTGGTACATGTAATTAGGTCATTAAGATTTGGAGAATTGGTATATTATGCATTTAAAGTAGCCATATATCAAAGTCTTAGATTAAGACACTATCAAAAGAGCTACTCGAATAGTTCCTAGGCACATCCATTTCAAGGATGAGTAAGTACTAAACGAGTCTGTAAGAACAGACCTACTAACTACTAGTTGAAAGTTTTTCCAGAACACTTGATCTCCCTTTCAGTAGTCATAATGAGAATAAGAGAACTACCTATAGCTCACTATTGGAACAAAAAATGGATTTTTTCAAGAACGATATCTTAGTGCAACCGTACATATTATAACTCATCAGTGTTGTTGGTCATAATCTTGTTCAATCCTACTTTTGACGAACCTACTTAAGTACTTTTATTATATAAAGAACTGTATCACTTATCTTATATATATGATATGAGAAAGTATGTTTTTTTCCAAAATAAGTGAAGGGTTAGTTTGACGAATTTAAAAGAAACAAAATAGAGAATTGTGTTGTTGGTGCTTGTCTTTCTTGACGAAACTAAACCTGGATCAATTTTGTTCAAGTCCTTTCTGGTGTAAAACTAATTTAGTTTTAGCCGATTATGGACTCAAATGGATCATACTTGGCTACTCTAGAATCGTTAAACAGGAACAATTGTATGTATTATACCCGTATTAAGGATGTTCACAATCTCAGCCTAAGTAATGTTGTCTTTGGTGCTTTTGAATTATAAAATGCAAAGACATTTATGATTGCAAATGATGTTTTTTTTTGCAGTTTGTGATTGCATCTTTGTCCGGTTGGGGCTTGCTTTTCTTTGGTGCATACAAGTTATTCTCTGGAGGCAAGAAGAACAAAGAAGAGGTACTTGTCTGATCTGCTGAAAGTGCAAATACTGCTACCTATTTACTTATGACAAATTGTTTCAGGAAACATAGATGATCATAACTGCTTTAAGCAATGTTTTTCAATGGATTGCAATCTAGTTAGAATCTCAATCAAAACAAGGATGAGACTTGAGAATAGAGTGTCGTGTAAATTCAATGGACGTTTAAAATATCAAAAGGCTGCCTAAACAACTTTATATTTTGCTCCTATAATTGCTTTCTCCCTGATGGTCAGTGGTGCAAGGAGAAAGAAAACTATCAGAACATTTTGCTCAGATACAACTGTCAGCTAACCTTTTCCAAGCCAATTGATTAATCATGTAGCAGGCCACGTGAGTGGTCATTGCTATCAAGTGTAGTATTTTTTTTCATGCAATTTTTTTGGTACACAATTTCCATACCTCAAAGAATAGGTTTACATATGTTTTCCTGAGCCTCACTTAGCTTGCTGGTTCCAAGCTTAGATAAATTAGGAGGATCACAGTAGCTTGGCAGCCTGCTAAAAATATGCTGAAATCTGAATATTGGGTGACATGGATAAAGCCAATTGGTTGCAAATATTTCTTCTAGTTGGGCTCAAATGATTTGAGATTGAGGCATAGTTGTTGAAAAAATAAGTTTACCTATCAGTGAGGGAAGATAGAGAGTATCACCTTGAGATATATGATTAAAACTTAGAAGGGCTAGACATAGTGAGAACAAGTAAATAGCATCTCTACTTATATTTGTGTACCCAAACATCGAAAGATTTAGAGATCCAAGTCAAACTTATTAACAAAAAAAGAACTATACCTTAAACAAAGAGGATGTTAAGACAGCCTATAGGAGAGACTGGATAAAGTCAAACTTCAGAGGCAGAGGAGTAAAAAGCTACCTTAGGTTCAAATTAGAGAAATTTTGAGTTTTGAACAAGGACTCAAACTGATACATGAATAGAACAAGAATTTTCAGCTTATGCTAGATGGACCTTGATTTTATATGAAATTATATTTTAGGATACTAAAATTCTGTGACATAATGGCTGATCAATTATGTTTGAAGGAATTATTTGCTGATACAATTATCGGTTCTTTTTGAGTCTTCTTAAACCTTCCCTGCTTACGAGGATGAGTTTTTCTGTTTGTGAAGTATGACATCCTAGTTTATCCTTCTTTGTGCAGAACTTGGTGCAAGCATCACAATAAGGTGGGTATTTACGTGGCATCATACTGAGGTTGGGATAATCCAAGTCCATAATCGAGAAGTTCTCTCTAATAATACAACTTATTGGACATTCATTTTTCATTTGATGGATTTTCTTATCATTATAAAATTACCAGAGAGCCTGTGAGCTACTAAATGGTGGACAAAAGTTGGTTGCATCAATACTGCAATATACTTTTTCTTTTGTATACTATGATAAATGAAACTGGTTTTTGTCAGTTTGCTTTCTAAGGTTCATTGTCATCTTGATCAGTTGTGTGGAAATTGTATTCACATTAATCTGAAGATCCGCGCACCATAATTTGTAGAAGCTCTGCACATGCAGTAAGTCTCAATGCCACTGAGAGTTGTGTTAATGAAGATGTCATCAAACAATTGTGTATTTCAAACT</genome_strand>
        <mrna_strand>TGACAATGGCGGCTCGTCGAGCGGCAGCCTTCACTCGAATCCCCTCCTCAACCACTGCGTCTCTTGTTCAGCGCCGCGGCCTTGCCGGCGCAGCTG................................................................................................................................................................ATCATCATGGGCCTCCTAAGGTCAATTGCTGGAAAGAACCGATGAATCCTGGTCAATGGAAGGAAGAACAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATTGCATCTTTGTCCGGTTGGGGCTTGCTTTTCTTTGGTGCATACAAGTTATTCTCTGGAGGCAAGAAGAACAAAGAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTGGTGCAAGCATCACAATAAGGTGGGTATTTACGTGGCATCATACTGAGGTTGGGATAATCCAAGTCCATAATCGAGAAGTTCTCTCTAATAATACAACTTATTGGACATTCATTTTTCATTTGATGGATTTTCTTATCATTATAAAATTACCAGAGAGCCTGTGAGCTACTAAATGGTGGACAAAAGTTGGTTGCATCAATACTGCAATATACTTTTTCTTTTGTATACTATGATAAATGAAACTGGTTTTTGTCAGTTTGCTTTCTAAGGTTCATTGTCATCTTGATCAGTTGTGTGGAAATTGTATTCACATTAATCTGAAGATCCGCGCACCATAATTTGTAGAAGCTCTGCACATGCAGTAAGTCTCAATGCCACTGAGAGTTGTGTTAATGAAGATGTCATCAAACAATTGTGTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E540189" ref_strand="-" ref_description="SGN-E540189 	[TUS-60-F11]">
      <seq>tgacaatggcggctcgtcgagcggcagccttcactcgaatcccctcctcaaccactgcgtctcttgttcagcgccgcggccttgccggcgcagctgatcatcatgggcctcctaaggtcaattgctggaaagaaccgatgaatcctggtcaatggaaggaagaacattttgtgattgcatctttgtccggttggggcttgcttttctttggtgcatacaagttattctctggaggcaagaagaacaaagaagagaacttggtgcaagcatcacaataaggtgggtatttacgtggcatcatactgaggttgggataatccaagtccataatcgagaagttctctctaataatacaacttattggacattcatttttcatttgatggattttcttatcattataaaattaccagagagcctgtgagctactaaatggtggacaaaagttggttgcatcaatactgcaatatactttttcttttgtatactatgataaatgaaactggtttttgtcagtttgctttctaaggttcattgtcatcttgatcagttgtgtggaaattgtattcacattaatctgaagatccgcgcaccataatttgtagaagctctgcacatgcagtaagtctcaatgccactgagagttgtgttaatgaagatgtcatcaaacaattggtaaaaaaaaaaaaaaaaaaactcgaggggggcccg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="36276" stop="40263"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36576" g_stop="36671" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36672" i_stop="36831" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36832" g_stop="36902" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="167" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36903" i_stop="38268" i_length="1366">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38269" g_stop="38355" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="254" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38356" i_stop="39538" i_length="1183">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39539" g_stop="39958" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="674" r_length="420" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="678" polyA_stop="697"/>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E540189" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E540189" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="36576" e_stop="36671"/>
          <exon e_start="36832" e_stop="36902"/>
          <exon e_start="38269" e_stop="38355"/>
          <exon e_start="39539" e_stop="39958"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGACAATGGCGGCTCGTCGAGCGGCAGCCTTCACTCGAATCCCCTCCTCAACCACTGCGTCTCTTGTTCAGCGCCGCGGCCTTGCCGGCGCAGCTGGTAAATGTTCTCTTATACTCTCAATTTTTTCATCCGATTCATTCAGATGTAGTAGAGTTCGTTGAAGGATTCATTTGCTTTAATGTTGATCCGTTAATATAAAATCATATGCTTTTTTGTTTTTAATTTATTAATGATATTGAAATGTGAACAATTCCAGATCATCATGGGCCTCCTAAGGTCAATTGCTGGAAAGAACCGATGAATCCTGGTCAATGGAAGGAAGAACATGTACGTTATATATGAAGCTTTTTATAGCCTTTTTTTCTTGCTATTGTCTGTTCAAAAGGAGCAAACTTTTTTTTAGGCGTTTAACAAATTAATGCTTGTGCAAGTTTGGCAATTGCAACTCGAAATATCATACATACAATTTTTTCTTTTCCTGACTAAGCTAGCAATATGTATCAGCTAACTCTGTCCACCAAATCACCTAGTGTTTTGTCCCTACTGCGATTTGAGGCGTACACCTCAGGGTGCTCAACTCACTTCATTGACAAAAAGGTCACGCCTTTGGGTGCATTTCGATCTAAACTTATTTTCTCAAAAAGAGAAGTTATCATATGATGATATATTTGCTTTCAACAAATGCTATAACAATATTGTATGTTCATGTCTTCTCTTAATAAAATAATGCTAAACAATGTTATTATGTTCATTTCTTCTTGTATTAAAATAATTGTACAAAATCAAACTTCAGATTTTACTATTAGTGGAATCATAATCTGATTTCCAGAGTAACAAGGCGTTACATGAACTAGTACTATGGAGTACTAATAACAAAATAAAACTAGATTGTTTAACTGTGGAAGAACTGTAGGTATGGTGGTACATGTAATTAGGTCATTAAGATTTGGAGAATTGGTATATTATGCATTTAAAGTAGCCATATATCAAAGTCTTAGATTAAGACACTATCAAAAGAGCTACTCGAATAGTTCCTAGGCACATCCATTTCAAGGATGAGTAAGTACTAAACGAGTCTGTAAGAACAGACCTACTAACTACTAGTTGAAAGTTTTTCCAGAACACTTGATCTCCCTTTCAGTAGTCATAATGAGAATAAGAGAACTACCTATAGCTCACTATTGGAACAAAAAATGGATTTTTTCAAGAACGATATCTTAGTGCAACCGTACATATTATAACTCATCAGTGTTGTTGGTCATAATCTTGTTCAATCCTACTTTTGACGAACCTACTTAAGTACTTTTATTATATAAAGAACTGTATCACTTATCTTATATATATGATATGAGAAAGTATGTTTTTTTCCAAAATAAGTGAAGGGTTAGTTTGACGAATTTAAAAGAAACAAAATAGAGAATTGTGTTGTTGGTGCTTGTCTTTCTTGACGAAACTAAACCTGGATCAATTTTGTTCAAGTCCTTTCTGGTGTAAAACTAATTTAGTTTTAGCCGATTATGGACTCAAATGGATCATACTTGGCTACTCTAGAATCGTTAAACAGGAACAATTGTATGTATTATACCCGTATTAAGGATGTTCACAATCTCAGCCTAAGTAATGTTGTCTTTGGTGCTTTTGAATTATAAAATGCAAAGACATTTATGATTGCAAATGATGTTTTTTTTTGCAGTTTGTGATTGCATCTTTGTCCGGTTGGGGCTTGCTTTTCTTTGGTGCATACAAGTTATTCTCTGGAGGCAAGAAGAACAAAGAAGAGGTACTTGTCTGATCTGCTGAAAGTGCAAATACTGCTACCTATTTACTTATGACAAATTGTTTCAGGAAACATAGATGATCATAACTGCTTTAAGCAATGTTTTTCAATGGATTGCAATCTAGTTAGAATCTCAATCAAAACAAGGATGAGACTTGAGAATAGAGTGTCGTGTAAATTCAATGGACGTTTAAAATATCAAAAGGCTGCCTAAACAACTTTATATTTTGCTCCTATAATTGCTTTCTCCCTGATGGTCAGTGGTGCAAGGAGAAAGAAAACTATCAGAACATTTTGCTCAGATACAACTGTCAGCTAACCTTTTCCAAGCCAATTGATTAATCATGTAGCAGGCCACGTGAGTGGTCATTGCTATCAAGTGTAGTATTTTTTTTCATGCAATTTTTTTGGTACACAATTTCCATACCTCAAAGAATAGGTTTACATATGTTTTCCTGAGCCTCACTTAGCTTGCTGGTTCCAAGCTTAGATAAATTAGGAGGATCACAGTAGCTTGGCAGCCTGCTAAAAATATGCTGAAATCTGAATATTGGGTGACATGGATAAAGCCAATTGGTTGCAAATATTTCTTCTAGTTGGGCTCAAATGATTTGAGATTGAGGCATAGTTGTTGAAAAAATAAGTTTACCTATCAGTGAGGGAAGATAGAGAGTATCACCTTGAGATATATGATTAAAACTTAGAAGGGCTAGACATAGTGAGAACAAGTAAATAGCATCTCTACTTATATTTGTGTACCCAAACATCGAAAGATTTAGAGATCCAAGTCAAACTTATTAACAAAAAAAGAACTATACCTTAAACAAAGAGGATGTTAAGACAGCCTATAGGAGAGACTGGATAAAGTCAAACTTCAGAGGCAGAGGAGTAAAAAGCTACCTTAGGTTCAAATTAGAGAAATTTTGAGTTTTGAACAAGGACTCAAACTGATACATGAATAGAACAAGAATTTTCAGCTTATGCTAGATGGACCTTGATTTTATATGAAATTATATTTTAGGATACTAAAATTCTGTGACATAATGGCTGATCAATTATGTTTGAAGGAATTATTTGCTGATACAATTATCGGTTCTTTTTGAGTCTTCTTAAACCTTCCCTGCTTACGAGGATGAGTTTTTCTGTTTGTGAAGTATGACATCCTAGTTTATCCTTCTTTGTGCAGAACTTGGTGCAAGCATCACAATAAGGTGGGTATTTACGTGGCATCATACTGAGGTTGGGATAATCCAAGTCCATAATCGAGAAGTTCTCTCTAATAATACAACTTATTGGACATTCATTTTTCATTTGATGGATTTTCTTATCATTATAAAATTACCAGAGAGCCTGTGAGCTACTAAATGGTGGACAAAAGTTGGTTGCATCAATACTGCAATATACTTTTTCTTTTGTATACTATGATAAATGAAACTGGTTTTTGTCAGTTTGCTTTCTAAGGTTCATTGTCATCTTGATCAGTTGTGTGGAAATTGTATTCACATTAATCTGAAGATCCGCGCACCATAATTTGTAGAAGCTCTGCACATGCAGTAAGTCTCAATGCCACTGAGAGTTGTGTTAATGAAGATGTCATCAAACAATT</genome_strand>
        <mrna_strand>TGACAATGGCGGCTCGTCGAGCGGCAGCCTTCACTCGAATCCCCTCCTCAACCACTGCGTCTCTTGTTCAGCGCCGCGGCCTTGCCGGCGCAGCTG................................................................................................................................................................ATCATCATGGGCCTCCTAAGGTCAATTGCTGGAAAGAACCGATGAATCCTGGTCAATGGAAGGAAGAACAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATTGCATCTTTGTCCGGTTGGGGCTTGCTTTTCTTTGGTGCATACAAGTTATTCTCTGGAGGCAAGAAGAACAAAGAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTGGTGCAAGCATCACAATAAGGTGGGTATTTACGTGGCATCATACTGAGGTTGGGATAATCCAAGTCCATAATCGAGAAGTTCTCTCTAATAATACAACTTATTGGACATTCATTTTTCATTTGATGGATTTTCTTATCATTATAAAATTACCAGAGAGCCTGTGAGCTACTAAATGGTGGACAAAAGTTGGTTGCATCAATACTGCAATATACTTTTTCTTTTGTATACTATGATAAATGAAACTGGTTTTTGTCAGTTTGCTTTCTAAGGTTCATTGTCATCTTGATCAGTTGTGTGGAAATTGTATTCACATTAATCTGAAGATCCGCGCACCATAATTTGTAGAAGCTCTGCACATGCAGTAAGTCTCAATGCCACTGAGAGTTGTGTTAATGAAGATGTCATCAAACAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E286457" ref_strand="+" ref_description="SGN-E286457 	[cLES-12-M17]">
      <seq>gacaatggcggctcgtcgagcggcagccttcactcgaatcccctcctcaaccactgcgtctcttgttcagcgccgcggccttgccggcgcagctgatcatcatgggcctcctaaggtcaattgctggaaagaaccgatgaatcctggtcaatggaaggaagaacattttgtgattgcatctttgtccggttggggcttgcttttctttggtgcatacaagttattctctggaggcaagaagaacaaagaagagaacttggtgcaagcatcacaataaggtgggtatttacgtggcatcatactgaggttgggataatccaagtccataatcgagaagttctctctaataatacaacttattggacattcatttttcatttgatggattttcttatcattataaaattaccagagagcctgtgagctactaaatggtggacaaaagttggttgcatcaatactgcaatatactttttcttttgtatactatgataaatgaaactggtttttgtcagtttgctttctaaggttcattgtcatcttgatcagttgtgtggaaattgtattcacattaatctgaagatccgcgcaccataatttgtagaagctctgcacatgcagtaagtctcaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="36277" stop="40218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="36577" g_stop="36671" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="36672" i_stop="36831" i_length="160">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="36832" g_stop="36902" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="166" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36903" i_stop="38268" i_length="1366">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="38269" g_stop="38355" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="253" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="38356" i_stop="39538" i_length="1183">
            <donor d_prob="0.887" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="39539" g_stop="39918" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="633" r_length="380" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E286457" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>633</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286457" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="36577" e_stop="36671"/>
          <exon e_start="36832" e_stop="36902"/>
          <exon e_start="38269" e_stop="38355"/>
          <exon e_start="39539" e_stop="39918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACAATGGCGGCTCGTCGAGCGGCAGCCTTCACTCGAATCCCCTCCTCAACCACTGCGTCTCTTGTTCAGCGCCGCGGCCTTGCCGGCGCAGCTGGTAAATGTTCTCTTATACTCTCAATTTTTTCATCCGATTCATTCAGATGTAGTAGAGTTCGTTGAAGGATTCATTTGCTTTAATGTTGATCCGTTAATATAAAATCATATGCTTTTTTGTTTTTAATTTATTAATGATATTGAAATGTGAACAATTCCAGATCATCATGGGCCTCCTAAGGTCAATTGCTGGAAAGAACCGATGAATCCTGGTCAATGGAAGGAAGAACATGTACGTTATATATGAAGCTTTTTATAGCCTTTTTTTCTTGCTATTGTCTGTTCAAAAGGAGCAAACTTTTTTTTAGGCGTTTAACAAATTAATGCTTGTGCAAGTTTGGCAATTGCAACTCGAAATATCATACATACAATTTTTTCTTTTCCTGACTAAGCTAGCAATATGTATCAGCTAACTCTGTCCACCAAATCACCTAGTGTTTTGTCCCTACTGCGATTTGAGGCGTACACCTCAGGGTGCTCAACTCACTTCATTGACAAAAAGGTCACGCCTTTGGGTGCATTTCGATCTAAACTTATTTTCTCAAAAAGAGAAGTTATCATATGATGATATATTTGCTTTCAACAAATGCTATAACAATATTGTATGTTCATGTCTTCTCTTAATAAAATAATGCTAAACAATGTTATTATGTTCATTTCTTCTTGTATTAAAATAATTGTACAAAATCAAACTTCAGATTTTACTATTAGTGGAATCATAATCTGATTTCCAGAGTAACAAGGCGTTACATGAACTAGTACTATGGAGTACTAATAACAAAATAAAACTAGATTGTTTAACTGTGGAAGAACTGTAGGTATGGTGGTACATGTAATTAGGTCATTAAGATTTGGAGAATTGGTATATTATGCATTTAAAGTAGCCATATATCAAAGTCTTAGATTAAGACACTATCAAAAGAGCTACTCGAATAGTTCCTAGGCACATCCATTTCAAGGATGAGTAAGTACTAAACGAGTCTGTAAGAACAGACCTACTAACTACTAGTTGAAAGTTTTTCCAGAACACTTGATCTCCCTTTCAGTAGTCATAATGAGAATAAGAGAACTACCTATAGCTCACTATTGGAACAAAAAATGGATTTTTTCAAGAACGATATCTTAGTGCAACCGTACATATTATAACTCATCAGTGTTGTTGGTCATAATCTTGTTCAATCCTACTTTTGACGAACCTACTTAAGTACTTTTATTATATAAAGAACTGTATCACTTATCTTATATATATGATATGAGAAAGTATGTTTTTTTCCAAAATAAGTGAAGGGTTAGTTTGACGAATTTAAAAGAAACAAAATAGAGAATTGTGTTGTTGGTGCTTGTCTTTCTTGACGAAACTAAACCTGGATCAATTTTGTTCAAGTCCTTTCTGGTGTAAAACTAATTTAGTTTTAGCCGATTATGGACTCAAATGGATCATACTTGGCTACTCTAGAATCGTTAAACAGGAACAATTGTATGTATTATACCCGTATTAAGGATGTTCACAATCTCAGCCTAAGTAATGTTGTCTTTGGTGCTTTTGAATTATAAAATGCAAAGACATTTATGATTGCAAATGATGTTTTTTTTTGCAGTTTGTGATTGCATCTTTGTCCGGTTGGGGCTTGCTTTTCTTTGGTGCATACAAGTTATTCTCTGGAGGCAAGAAGAACAAAGAAGAGGTACTTGTCTGATCTGCTGAAAGTGCAAATACTGCTACCTATTTACTTATGACAAATTGTTTCAGGAAACATAGATGATCATAACTGCTTTAAGCAATGTTTTTCAATGGATTGCAATCTAGTTAGAATCTCAATCAAAACAAGGATGAGACTTGAGAATAGAGTGTCGTGTAAATTCAATGGACGTTTAAAATATCAAAAGGCTGCCTAAACAACTTTATATTTTGCTCCTATAATTGCTTTCTCCCTGATGGTCAGTGGTGCAAGGAGAAAGAAAACTATCAGAACATTTTGCTCAGATACAACTGTCAGCTAACCTTTTCCAAGCCAATTGATTAATCATGTAGCAGGCCACGTGAGTGGTCATTGCTATCAAGTGTAGTATTTTTTTTCATGCAATTTTTTTGGTACACAATTTCCATACCTCAAAGAATAGGTTTACATATGTTTTCCTGAGCCTCACTTAGCTTGCTGGTTCCAAGCTTAGATAAATTAGGAGGATCACAGTAGCTTGGCAGCCTGCTAAAAATATGCTGAAATCTGAATATTGGGTGACATGGATAAAGCCAATTGGTTGCAAATATTTCTTCTAGTTGGGCTCAAATGATTTGAGATTGAGGCATAGTTGTTGAAAAAATAAGTTTACCTATCAGTGAGGGAAGATAGAGAGTATCACCTTGAGATATATGATTAAAACTTAGAAGGGCTAGACATAGTGAGAACAAGTAAATAGCATCTCTACTTATATTTGTGTACCCAAACATCGAAAGATTTAGAGATCCAAGTCAAACTTATTAACAAAAAAAGAACTATACCTTAAACAAAGAGGATGTTAAGACAGCCTATAGGAGAGACTGGATAAAGTCAAACTTCAGAGGCAGAGGAGTAAAAAGCTACCTTAGGTTCAAATTAGAGAAATTTTGAGTTTTGAACAAGGACTCAAACTGATACATGAATAGAACAAGAATTTTCAGCTTATGCTAGATGGACCTTGATTTTATATGAAATTATATTTTAGGATACTAAAATTCTGTGACATAATGGCTGATCAATTATGTTTGAAGGAATTATTTGCTGATACAATTATCGGTTCTTTTTGAGTCTTCTTAAACCTTCCCTGCTTACGAGGATGAGTTTTTCTGTTTGTGAAGTATGACATCCTAGTTTATCCTTCTTTGTGCAGAACTTGGTGCAAGCATCACAATAAGGTGGGTATTTACGTGGCATCATACTGAGGTTGGGATAATCCAAGTCCATAATCGAGAAGTTCTCTCTAATAATACAACTTATTGGACATTCATTTTTCATTTGATGGATTTTCTTATCATTATAAAATTACCAGAGAGCCTGTGAGCTACTAAATGGTGGACAAAAGTTGGTTGCATCAATACTGCAATATACTTTTTCTTTTGTATACTATGATAAATGAAACTGGTTTTTGTCAGTTTGCTTTCTAAGGTTCATTGTCATCTTGATCAGTTGTGTGGAAATTGTATTCACATTAATCTGAAGATCCGCGCACCATAATTTGTAGAAGCTCTGCACATGCAGTAAGTCTCAATG</genome_strand>
        <mrna_strand>GACAATGGCGGCTCGTCGAGCGGCAGCCTTCACTCGAATCCCCTCCTCAACCACTGCGTCTCTTGTTCAGCGCCGCGGCCTTGCCGGCGCAGCTG................................................................................................................................................................ATCATCATGGGCCTCCTAAGGTCAATTGCTGGAAAGAACCGATGAATCCTGGTCAATGGAAGGAAGAACAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGATTGCATCTTTGTCCGGTTGGGGCTTGCTTTTCTTTGGTGCATACAAGTTATTCTCTGGAGGCAAGAAGAACAAAGAAGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTGGTGCAAGCATCACAATAAGGTGGGTATTTACGTGGCATCATACTGAGGTTGGGATAATCCAAGTCCATAATCGAGAAGTTCTCTCTAATAATACAACTTATTGGACATTCATTTTTCATTTGATGGATTTTCTTATCATTATAAAATTACCAGAGAGCCTGTGAGCTACTAAATGGTGGACAAAAGTTGGTTGCATCAATACTGCAATATACTTTTTCTTTTGTATACTATGATAAATGAAACTGGTTTTTGTCAGTTTGCTTTCTAAGGTTCATTGTCATCTTGATCAGTTGTGTGGAAATTGTATTCACATTAATCTGAAGATCCGCGCACCATAATTTGTAGAAGCTCTGCACATGCAGTAAGTCTCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E330914" ref_strand="+" ref_description="SGN-E330914 	[cTOD-10-E4]">
      <seq>tctctctgtaaaatgtatgaacacaactctttcgtaatcgaccaggcgtaccgagttctcagcgccaagattttatgactttgttgatgaagaaacagaagaggaaacacagaaagctgagcattggttccacatttcaagaagctatgctccttctccttttatgccaaaaattaaaactggtagaatggttcaacttgagagcctatgtgacttcactgatgcctgaggagttgcaagataacacaaggcctgctactgagctcacttcttctaaaagtaaagacgaggtaaccccatatttaattgtaccagaaccttgcaccagtcttcctaatccggaatctgaagagaagcagtctattgttcaagaaacttgcaccacccggaccaacaataacatctcagaagagccgactctcggaagactaattccaagaggcaacaaactgctaaaaagattgcaagcatacttagaaacccttcagcattaaagtcaaaaactcaacaaccacagtcgcatctgagtagttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="55125" stop="57130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55425" g_stop="55581" g_length="157"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.987"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55582" i_stop="56102" i_length="521">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="56103" g_stop="56193" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="250" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="56194" i_stop="56368" i_length="175">
            <donor d_prob="0.997" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="56369" g_stop="56459" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="341" r_length="91" r_score="0.989"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="56460" i_stop="56550" i_length="91">
            <donor d_prob="0.022" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="56551" g_stop="56581" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="342" r_stop="372" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="56582" i_stop="56668" i_length="87">
            <donor d_prob="0.991" d_score="0.00"/>
            <acceptor a_prob="0.713" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="56669" g_stop="56830" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="536" r_length="164" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E330914" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330914" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55425" e_stop="55581"/>
          <exon e_start="56103" e_stop="56193"/>
          <exon e_start="56369" e_stop="56459"/>
          <exon e_start="56551" e_stop="56581"/>
          <exon e_start="56669" e_stop="56830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTCTGTAAAATGTATGAACACAACTCTTTCGTAATCGACCAGGCGTA-CGAGTTCTCAGCGCCAAGATTTTATGACTTTGTTGATGAAGAAACAGAAGAGGAAACACAGAAAGCTGAGCATTGGTTCCACATTTCAAGAAGCTATGCTCCTTCTCGTATGTCATTTTCTTCTTCATCCTCTGTTACACTATTTGGGTTCTCTGTTTTGTGCGTTTGTGTAATTTGATAGCAACATGAAAGTTCAGGTAGCCAACCAAATGATGTCAACTTTAGAATCATATTTGATAATTTGGTATTTTTTCCCCTATTAATGGAATCTGTAGTAATGCAGAACAGTTAGTGGTAGTTAAAATGCATTGATAAAGCCTTCTACTTTATCAAGCATACGGATCTTACAATCAATGAACATTTTGACTTGACTGTGAAGAACTTCAAATAAGTGTAGTGTAGTTGAAATTTCCATCACAACCACTCCTACATATAGGTGGTACCAACCACTGATGTTATGTTTGATCTGTTTATTCAATGCATACTTCTGTTTCATCGCGTATGTATACGATAAATGTGGACTGTAATAATGTCCTGGCGATTTTGGGATGACATGTTGATTGCTTATGTTTATTAGAGTGACAATTTTGGGATGAGATGTTGATTTTCTTCTTGGTTGTTTTTCCAGCTTTTATGCCAAAAATTAAAACTGGTAGAATGGTTCAACTTGAGAGCCTATGTGACTTCACTGATG-CTGAGGAGTTGCAAGATAACACAAGGTCTGTAACTATTTTATATTGCAAAAAGCAAATGATTATGTTCTTACCTGTGTTGCTCGGAGTCTCCAAAATGTGATCCTCCAAAACTCATTAACCCGATAACATTTTTGAAGCGTCTTGAGCAACATAGGTTCTTAATGGTGTCAATGTACTGACATTACTATCTGAAAAACAGGCCTGCTACTGAGCTCACTTCTTCTAAAAGTAAAGACGAGGTAACGCCATATTTAATTGTACCAGAACCTTGCACCAGTCTTCCTAATCCGGTATGCATCACTCATAACTTGTAGTAGAGAAGAAGCACCATTTGCTGCGCCTTTTTGAACACTGTCTTATCTTGTCTTTGTAATTTTCCAGGAATCTGAAGAGAAGCAGTCTATTGTTCAAGGTAAATTGTACTATGAGAATCCTATTCTTATATCCTTAGAATGAATTTGGCTGATAAAGATTCTAATTTAGCACTTGTATGTAACAGAAACTTGCA-CACCCGGACCAACAATAACATCTCAGAAGAG-CGACTCTCGGAAGACTAATTCCAAGAGGCAACAAACTGCTAAAAAGATTGCAAGCATACTTAGAAACCCTTCAGCATTAAAGTCAAAAACTCAACAACAACAGTCGCATCTGAGTAGTTCTA</genome_strand>
        <mrna_strand>TCTCTCTGTAAAATGTATGAACACAACTCTTTCGTAATCGACCAGGCGTACCGAGTTCTCAGCGCCAAGATTTTATGACTTTGTTGATGAAGAAACAGAAGAGGAAACACAGAAAGCTGAGCATTGGTTCCACATTTCAAGAAGCTATGCTCCTTCTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTATGCCAAAAATTAAAACTGGTAGAATGGTTCAACTTGAGAGCCTATGTGACTTCACTGATGCCTGAGGAGTTGCAAGATAACACAAG...............................................................................................................................................................................GCCTGCTACTGAGCTCACTTCTTCTAAAAGTAAAGACGAGGTAACCCCATATTTAATTGTACCAGAACCTTGCACCAGTCTTCCTAATCCG...........................................................................................GAATCTGAAGAGAAGCAGTCTATTGTTCAAG.......................................................................................AAACTTGCACCACCCGGACCAACAATAACATCTCAGAAGAGCCGACTCTCGGAAGACTAATTCCAAGAGGCAACAAACTGCTAAAAAGATTGCAAGCATACTTAGAAACCCTTCAGCATTAAAGTCAAAAACTCAACAACCACAGTCGCATCTGAGTAGTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E343327" ref_strand="+" ref_description="SGN-E343327 	[cTOF-17-J24]">
      <seq>agagattggaggaggaagaagctaagatgaggttattcaaggcgcaaccaatcttgattgaggatccaattccagttcctgagaaagaacgtaaacctttcactgaggttcaggaattcaatctgcatgtaaatcaccgtgctgttgacagaactgaatttgataagaagattaaggagaaagaaatgatgtataataggtatcaggaggaagcagaatgtgcaagaatgatggaagaggagaaggccttaaaacaactaaggagaactttggtacctcatgctagaccagtgcctaattttgatcatcctttcctacctcaaaagtcttccaaacatgtcacaagaccaagctcccccaagctacaggttattaaaaggaaagagaggaggaaaatgctctgcccctatgcagcagtttctagtgctgctgcctctcaaatgagatgatgattcaaatccgacgagatgagatgatgattgttcaagaattcttgaaccccctcctatatgttttatgtctaacagttatgtaataatagagatctgtattattttttgtagcattcagctagcttagcataatttaaaatgacaaatagttttgcgcctatgtaattatatcatattcatattatattattttatatcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="58838" stop="60420"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="59138" g_stop="59198" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="59199" i_stop="59276" i_length="78">
            <donor d_prob="0.940" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="59277" g_stop="59385" g_length="109"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="170" r_length="109" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="59386" i_stop="59461" i_length="76">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.896" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="59462" g_stop="59521" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="230" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="59522" i_stop="59602" i_length="81">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.810" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="59603" g_stop="59697" g_length="95"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="325" r_length="95" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="59698" i_stop="59791" i_length="94">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.779" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59792" g_stop="60126" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="660" r_length="335" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E343327" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>660</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343327" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="59138" e_stop="59198"/>
          <exon e_start="59277" e_stop="59385"/>
          <exon e_start="59462" e_stop="59521"/>
          <exon e_start="59603" e_stop="59697"/>
          <exon e_start="59792" e_stop="60126"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGATTGGAGGAGGAAGAAGCTAAGATGAGGTTATTCAAGGCGCAACCAATCTTGATTGAGTAAGAACTTTGAGGAATATCAACTTTTCTACTCAGTAATACTGAAAGGTGGCTAATATTTTCTACGTAATAATGCAGGGATCCAATTCCAGTTCCTGAGAAAGAACGTAAACCTTTCACTGAGGTTCAGGAATTCAATCTGCATGTAAATCACCGTGCTGTTGACAGAACTGAATTTGATAAGAAGGTAAACTTTTTCCTCTTTAATCACATTCTTACGCTTTCGTATGGGTCTAGCACTCACCTAATAAGTTGTTGTGCAGATTAAGGAGAAAGAAATGATGTATAATAGGTATCAGGAGGAAGCAGAATGTGCAAGAATGGTATGCTCATATTATCAAACTATACTATTATTTTTCATTACAAAGTATGTAGACTAATTCCAATTTCTGGAACGCGGATAGATGGAAGAGGAGAAGGCCTTAAAACAACTAAGGAGAACTTTGGTACCTCATGCTAGACCAGTGCCTAATTTTGATCATCCTTTCCTACCTCAAAAGTAAGAATGTTACTGTTTGTGTTTCTTCTACCTTTCTTTTATTTGTCTTCCTCATACTAAGACGACATATAAGTCTATCCGTATACAACAACAGGTCTTCCAAACATGTCACAAGACCAAGCTCCCCCAAGCTACAGGTTATTAAAAGGAAAGAGAGGAGGAAAATGCTCTGCCCCTATGCAGCAGTTTCTAGTGCTGCTGCCTCTCAAATGAGATGATGATTCAAATCCGACGAGATGAGATGATGATTGTTCAAGAATTCTTGAACCCCCTCCTATATGTTTTATGTCTAACAGTTATGTAATAATAGAGATCTGTATTATTTTTTGTAGCATTCAGCTAGCTTAGCATAATTTAAAATGACAAATAGTTTTGCGCCTATGTAATTATATCATATTCATATTATATTATTTTATATCAAAAGTGAGA</genome_strand>
        <mrna_strand>AGAGATTGGAGGAGGAAGAAGCTAAGATGAGGTTATTCAAGGCGCAACCAATCTTGATTGA..............................................................................GGATCCAATTCCAGTTCCTGAGAAAGAACGTAAACCTTTCACTGAGGTTCAGGAATTCAATCTGCATGTAAATCACCGTGCTGTTGACAGAACTGAATTTGATAAGAAG............................................................................ATTAAGGAGAAAGAAATGATGTATAATAGGTATCAGGAGGAAGCAGAATGTGCAAGAATG.................................................................................ATGGAAGAGGAGAAGGCCTTAAAACAACTAAGGAGAACTTTGGTACCTCATGCTAGACCAGTGCCTAATTTTGATCATCCTTTCCTACCTCAAAA..............................................................................................GTCTTCCAAACATGTCACAAGACCAAGCTCCCCCAAGCTACAGGTTATTAAAAGGAAAGAGAGGAGGAAAATGCTCTGCCCCTATGCAGCAGTTTCTAGTGCTGCTGCCTCTCAAATGAGATGATGATTCAAATCCGACGAGATGAGATGATGATTGTTCAAGAATTCTTGAACCCCCTCCTATATGTTTTATGTCTAACAGTTATGTAATAATAGAGATCTGTATTATTTTTTGTAGCATTCAGCTAGCTTAGCATAATTTAAAATGACAAATAGTTTTGCGCCTATGTAATTATATCATATTCATATTATATTATTTTATATCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E373220" ref_strand="-" ref_description="SGN-E373220 	[TUS-31-B17]">
      <seq>gcaattccattatatgtctttggctgtcctcacaatttcatgcgtatagagcctgataagaattggtgcatctgcttgggagtttttattgtgctgcaggcatcaattcttctgttgcagcattaccttggatctcggtggttcattccacgtcagattttacctgagaagtataactattataaaaggtttgatcagggtgcaaatcacgccactgactgtgttatttgcatgactgctattgatcatactcaacgctcaaataattgcatggtgaccccttgtgatcatttctttcactctggttgtttgcaaaaatggatggacataaaaatggagtgtccaacatgccgacgtcctcttccacccgcttgaataaatgttatttcttgaattcatcttggtagagcaactgacattgcccgacctgtttagaaaggttggagacaaaaaaaattacataaaaagttttctgtataaaagttgagcacaaattcactagacttgctgtatatcttgttgattaactgtctattctttttttatatttcacataaaaacaataacattatcaaataattcatagaatttatggaatattttttaatttttatgtgccaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="62140" stop="54897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="61840" g_stop="61685" g_length="156"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="156" r_length="156" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="61684" i_stop="61567" i_length="118">
            <donor d_prob="0.897" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="61566" g_stop="61450" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="273" r_length="117" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="61449" i_stop="61343" i_length="107">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.252" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="61342" g_stop="61177" g_length="166"/>
          <reference_exon_boundary r_type="cDNA" r_start="274" r_stop="439" r_length="166" r_score="0.982"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="61176" i_stop="60590" i_length="587">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.744" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="60589" g_stop="60407" g_length="183"/>
          <reference_exon_boundary r_type="cDNA" r_start="440" r_stop="622" r_length="183" r_score="0.956"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="60406" i_stop="59754" i_length="653">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.721" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="59753" g_stop="59730" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="646" r_length="24" r_score="0.625"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E373220" ref_strand="-">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373220" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="61840" e_stop="61685"/>
          <exon e_start="61566" e_stop="61450"/>
          <exon e_start="61342" e_stop="61177"/>
          <exon e_start="60589" e_stop="60407"/>
          <exon e_start="59753" e_stop="59730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAATTCCATTATATGTCTTTGGCTGTCCTCACAATTTCATGCGTATAGAGCCTGATAAGAATTGGTGCATCTGCTTGGGAGTTTTTATTGTGCTGCAGGCATCAATTCTTCTGTTGCAGCATTACCTTGGATCTCGGTGGTTCATTCCACGTCAGGTTTGATACTGCTTTCAGTTAAAATTCTTGAAAGGATTATTTGTTGAAAGCAGAAAAAAACTGAATAATTAGTGCTTCCATCTGTCTTATGTAAGTAAGCTTTATTGTGGTGTTGCAGATTTTACCTGAGAAGTATAACTATTATAGAAGGTTTGATCAGGGTGCAAATCACGCCACTGACTGTGTTATTTGCATGACTGCTATTGATCATACTCAACGCTCAAATAATTGCATGGTAACTATAAAAGAAAAATGCTCTAGCTTAATTTAGTGTTCCTATTAGAATGCGATTTTAACTCCAAAAAAAAATACACAGTTAGTAATTGGCCTAATGATGTTCAGGTGACACCTTGTGATCATTTCTTTCACTCTGGTTGTTTGCAAAGATGGATGGACATAAAGATGGAGTGTCCAACATGCCGACGTCCTCTTCCACCCGCTTGAATAAATGTTATTTCTTGAATTCATCTTGGTAGAGCAACTGACATTGCCCGACCTGTTTAGAAAGGTAAACGGCTTTACTTGAAGTTTATATTTGAACAAGTGAGTACAAATTCAGCAATAGTTCATAGTGATTTTACTTTTAATAATGCTGTTGTTTAAACTGTCTGCCTTGTAGCTTGCCATTGTCCGAGTAAAGACTACGGGTGTGGAGGAAAACATTTTCCGCAAAATGTTCTATAGTTCTCATGTTCGGTTGGTCAAAATTTTGGAAAATATTTTCTATAGGAAAACAAGCTCAATTTTGGAACACAGAAGTTGCCAGTCCAAATTGACTGTTTCCTCTCCACCCTCCAGGACCTCATTTTCACCCCATCTCCACCACGTCACGCTCCTACCTCCACACCCTCACCTCCAATAGTACTTATCTAGATTATCTACAAATGCTTTTAGGATAATATTTTTTTGCTTGCATTCTGAACACAGCAAGAAAATAAGTATGTAACTCATTGGTTTTCTTGGAAAATATTTTCGTTCCTTCAGAACCTGCCTTACGGCATGATAGATTTCCTTGTAAATAGATGTCTGAAGGTCGTTTTTCTGGCTATGATCCAGAAGGAAAAATGTTTGACAAGGCTTCATTCTCTCTTTCAGGTTGGAGACAGAGAGAATTACATAAGAAGTTTTCTGTATAAAAGTTGAGCACAGATTCACTAGACTTGCTGTATATCTTGTTGATTAACTGTCTATTCTTTTCTTATATTTCACATAAAAACAATAACATTATCAAATAATTCATAGAATTTATGGAATATTTCTTAATTTTTATGTGCCATATTGGAGTATGACCATATTTCATTCACTATCTAAATGAATGTGATCTGTAATATGAATCGAGTTCATTGCGACTCTTCAATTTCTCTAGACTTTTTTGGAGTAAGAAAGAAAATGTTTTTTATGGGTGAATAAAATTTGCATTAATCAATAAAAACCTGGGGAATTTGCAATGATATATAATTAACTAAGAAATTAAAGGGCAGGAGACTTTTAATTCTACATTACATAAATAAAATACAATATAGGAGAAAATGATCATTCAACTTTGAAGTTTGGAGCTTCTCACTTTTGATATAAAATAATATAATATGAATATGATATAATTACATAGGCGCAAAACTATTTGTCATTTTAAATTATGCTAAGCTAGCTGAATGCTACAAAAAATAATACAGATCTCTATTATTACATAACTGTTAGACATAAAACATATAGGAGGGGGTTCAAGAATTCTTGAACAATCATCATCTCATCTCGTCGGATTTGAATCATCATCTCATTTGAGAGGCAGCAGCACTAGAAACTGCTGCATAGGGGCAGAGCATTTTCCTCCTCTCTTTCCTTTTAATAACCTGTAGCTTGGGGGAGCTTGGTCTTGTGACATGTTTGGAAGACCTGTTGTTGTATACGGATAGACTTATATGTCGTCTTAGTATGAGGAAGACAAATAAAAGAAA</genome_strand>
        <mrna_strand>GCAATTCCATTATATGTCTTTGGCTGTCCTCACAATTTCATGCGTATAGAGCCTGATAAGAATTGGTGCATCTGCTTGGGAGTTTTTATTGTGCTGCAGGCATCAATTCTTCTGTTGCAGCATTACCTTGGATCTCGGTGGTTCATTCCACGTCAG......................................................................................................................ATTTTACCTGAGAAGTATAACTATTATAAAAGGTTTGATCAGGGTGCAAATCACGCCACTGACTGTGTTATTTGCATGACTGCTATTGATCATACTCAACGCTCAAATAATTGCATG...........................................................................................................GTGACCCCTTGTGATCATTTCTTTCACTCTGGTTGTTTGCAAAAATGGATGGACATAAAAATGGAGTGTCCAACATGCCGACGTCCTCTTCCACCCGCTTGAATAAATGTTATTTCTTGAATTCATCTTGGTAGAGCAACTGACATTGCCCGACCTGTTTAGAAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAGACAAAAAAAATTACATAAAAAGTTTTCTGTATAAAAGTTGAGCACAAATTCACTAGACTTGCTGTATATCTTGTTGATTAACTGTCTATTCTTTTTTTATATTTCACATAAAAACAATAACATTATCAAATAATTCATAGAATTTATGGAATATTTTTTAATTTTTATGTGCCAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E332182" ref_strand="+" ref_description="SGN-E332182 	[cTOD-16-D16]">
      <seq>aacaaatagctcttccaggtttcctgattttaggaagtccaatggcaactcggtccttgaattgataagtaatccaacaaaaataactggtgtacattatattcagggtgcaataattttccatgatgtgtttgacaatgaacatggagttggtgctgcacaaataagggtagaaggtgtatatatatggccatttagacaacttcgaatggtagcttacagtggcaaagatggtgagtttggacaggaagacgattatctattatcaaatccatatcacttgcttggagttttctcgtcccagatattccaggagtcttctcgagataagatttggaaaaagaaacactcaccgttttacgagatggagaaaaattgtaatatagaaattgctgcacaaattgctcgtgtctcatcctcctcaaatgatgcagctcgtgaccattatcaactagaaggattgatagagagcccttcagtggatgctgacggggactgtttctcaccgatgcttttgaatgctacttctgtcaatatagaggtttactacaacaaagcggtgaactacacattgatggtcacatttatatcttttctgcaagtgctccttctgattcgacaaatggaacatagcaacacccaatcangagctgcgaaagtttcaattctgatgattggacaacangctatcatggatgcttatctttgtcttttgcatctgaccgcaggnnatactgntgaaatccttttaatgcttttgcactgctgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="67557" stop="63054"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67257" g_stop="67152" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="67151" i_stop="66217" i_length="935">
            <donor d_prob="0.889" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66216" g_stop="66101" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="222" r_length="116" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66100" i_stop="65671" i_length="430">
            <donor d_prob="0.751" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65670" g_stop="65610" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="223" r_stop="283" r_length="61" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65609" i_stop="64667" i_length="943">
            <donor d_prob="0.759" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="64666" g_stop="64600" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="350" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="64599" i_stop="64518" i_length="82">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="64517" g_stop="64440" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="428" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="64439" i_stop="63819" i_length="621">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.939" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="63818" g_stop="63661" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="429" r_stop="586" r_length="158" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="63660" i_stop="63573" i_length="88">
            <donor d_prob="0.917" d_score="1.00"/>
            <acceptor a_prob="0.694" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="63572" g_stop="63513" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="646" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="63512" i_stop="63437" i_length="76">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.980" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="63436" g_stop="63343" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="740" r_length="94" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E332182" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>740</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E332182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67257" e_stop="67152"/>
          <exon e_start="66216" e_stop="66101"/>
          <exon e_start="65670" e_stop="65610"/>
          <exon e_start="64666" e_stop="64600"/>
          <exon e_start="64517" e_stop="64440"/>
          <exon e_start="63818" e_stop="63661"/>
          <exon e_start="63572" e_stop="63513"/>
          <exon e_start="63436" e_stop="63343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAAATAGCTCTTCCAGGTTTCCTGATTTTAGGAAGTCCAATGGCAACTCGGTCCTTGAATTGATAAGTAATCCAACAAAAATAACTGGTGTACATTATATTCAGGTAATCCTGTCATCATTAAATAAGTGAATTTCTTTATGAAATGCTATGTTAACTCCCTGTTCTCTGCACAAGTACTTGTCTCAAACTTATTAATTGTCTATGTCATGTCCCAATAGAGAACAATGTGCAGAAAGTTAAACTAAACTGCATTTTACTTTTAGTCTTTTGGTGTAATCAGTTATACTCTAATGACACTATCTCTATTATTGATGTGTTAGACTCAATTTAGACGTAGAGAAGTGAAATCAGGAGTACACTTGTATATAAGGTTACAGTAGGAGCCTTGTACTGTTTTGTGATATAATACGAAGTTACCAAGTTTAAAAAAAAATGTCATGTGCCCCAATAGGGTTTTTGAATTTTAAATTGATGACTGGGTAGTTTACTTCTCTTTCTATATCGAGAGAGCATCTATCATAAGTCATATCTAGACTTGCAGCATGCCATGCTTGTTTTATTGGACTTTACTTTGCTTTTCTAATAAAGCATGATGTTTCCAAACAGAAGTTGCAAACTTTATGTTTGTAGAAAACATATTTTTTGTAAGGTTTTCTATTTTTGGTATACATCTTGTGTAGTGGTGAGTTTTTCCCTTTATTAAAAAGATCTTATTTTTCTACAATATCTTTTGTCAAAAATCAAACTTAACATTTATCCATAATCATATGGTAAATGTGAAAAATTGCATGTTCCTCATGAAGGCGCTAATCAATGATAGCATAGGTCCAGGCATGAATGATATTAGACATTTATGCAATTAGTAAGTTTTAGTTAGTTTTTGTTTCATTTTTAGGAAGTTCCTCCAAACCCCCTTCGGCGTAAGATTACACTGTTTATTAGGCATTTCATCTTTCTTAGATGATGATACTTTCGGATGCAGAAATTGTACATTTCTATGGTTTAATCTTTAGTTGATCTCATTTTCCAAACAACAGGGTGCAATAATTTTCCATGATGTGTTTGACAATGAACATGGAGTTGGTGCTGCACAAATAAGGGTAGAAGGTGTATATATATGGCCATTTAGACAACTTCGAATGGTAGCTTACAGGTACTAGTTCTTATTTGGTACCTAAGCTGAAAGGAAATTTGTAACACCGTCGTAGGAAATTTCTAGCTTACAGGTACTGGTTCTTAAGATGCTACGGTCCTTTAATTCTGCCGAATGATTCAAAATGGTATTTATAATATAAGAGAATGGATGTCTAGGATGGGTGTCTTTGCTGAGTTTCAAGCACTCTTTAAGTAATTCATGCCAGAAATTTACATTTGTTACAATAGTTGCTAAAGTCCTTATCTCATGCTTAAGAATTCCAATTTAAAGTTTTTTTTTTCCGGGAATTGTCATTCAAATTGCTAAATCTTGTGTTCTTCAGAAAATGGAATTGAAATTTTAGATATTGGTTCCACATCACTTAACATTCCTGCAGATGCTACTGTCATGTGCTTTGTCAACTCATAGTTCTGCTTTTAATTTGCAGTGGCAAAGATGGTGAGTTTGGACAGGAAGACGATTATCTATTATCAAATCCATATCACTTGGTATTAATTACAACAATATGTCATTTGTCCTCAGCATGGATTATTGAGTATAGCTTTTACATGACTCCTGATGATCATCTGTTACAATGAGTTCTGCTGCTGCTTGAATCACTTGACATACTTTAATTTCTTCAGCAGTGTTACATGCTTTATATTTGAAGAGCATAATGCTTGAATACCATTAAGAATTTGACATGCTTTGACTTTTATATATGATATTTTGGTAATGGTATAACAAATTTCAAAACTTTTCTCTTTTGCTTTCTTAGGGCTCCGTTTGTCTACTGTATGTCTCTTTCTTTAAATTAATTTGCCGGGAGTAGCTTTTTATTAACATTTGAAACTTTAGCACATGTTTGGATACTCATAAGTAGAATTCCCTTTCAAAGTGGAGATGATGAGTGGGGATTATGAATGCTATTCATACCTTTTCTGATGGGTTTCCTTTCCCCCTATCCTTTCCTATTCCCTTCCTTTTTTGTTGTTTCAAAAAGGTTTTTGTGTATTCCATTCTTCCAGTGGTAAGAGATTCACATGTTGAAGAAAAATGACCATTATATCTGGATAGCCTTCTTTTTTCTTTTTCTCCATTTTACCTTGTAAGAAAATATATGCTTTTGCAGTCCGGTTTAGCTTCTTCGTAATCAAAATAGCTTAAAATGAGGGCTGCTCTTAATCTTTGTTCTTCCACAGCGGCAGCTAATTACCATCAGATATCTCATATTCTATGGTAATCAAATTGAAATTATTCGGAAATGATAAAAAGGAGGCTCTTTATGAGGAATTTCTTGTGTTCCGTGATGGCTATAATGTTTACTTTAGATGTACATCCCTTTCATGTGACAATAATATGTACATCCCTTTCACGTGACAATAATTCGAGTTTAAGACTTTATCAAGATTTAAGGCATTGAAAAATGACTTGCTTTGTCTTTGTTGACAGCTTGGAGTTTTCTCGTCCCAGATATTCCAGGAGTCTTCTCGAGATAAGATTTGGAAAAAGAAACACTGTAATAATTTATTTTTTTCAACAGTTATCCAGTTTAATGTTTTAGCTCCTAAGCTAACTTATGTATCTTTTTGTTTCTGCAGCACCGTTTTACGAGATGGAGAAAAATTGTAATATAGAAATTGCTGCACAAATTGCTCGTGTCTCATCCTCCTCAAATGGTACTTGGCTTTCTTATTTACCTTTCACCTTTGATACGACTCAAGCATCAAGAGGGACTTTCTTCTCTGGTTCATTTGGCTTTCATATATGCTTCCGAATTCATTTATTTCATGAACTCTGTTTTATATAATTTTTACTCCAATGATCATCAAGTAAGGATTTTTTAAATAAGGTTAGGTCAATCATTAAGAAAGGATTTTTGTCATTACTCTTTCAGTTCTCGGGTATTTTAGCTTTTGAGGCCTATAAATGTTCTAAAGTCAATTTGACAAGATCACCCTGCATTATATATGCAAAATGCATTATGTTACCTAAAGCTACTTCTTTCATATTCGTTCAGGATCTTCATATGCTTTTCTGCAGCTTAGTGTATCATGATGCAGTTTGCCCTAACAGAGAGAGTGCTGATACCATGTTAAGAAATGGATCTTGAGCCTAACTCAATCCCAAAATCTAGATCAAGAGTGTTATATTAAGAGACCACCCATTCCCTTCACCACAATATGGGACTTCTTCACATTTTCTTTGTTCCATTTTAATGCATATCTTGATTCAGTATTCAACTTATCCATAAGTTTGTGCAAAATATCAGGAACAAGTGATTTATTTTCCTTTCTCAGATGCAGCTCGTGACCATTATCAACTAGAAGGATTGATAGAGAGCCCTTCAGTGGATGCTGACGGGGACTGTTTCTCACCGATGCTTTTGAATGCTACTTCTGTCAATATAGAGGTTTACTACAACAAAGCGGTGAACTACACATTGATGGTCACATTTGTATCCTACAACACTTCTCATTTTTATTCATATCATTTTTGTAACAGATATCGCTTTGTCTGGATTCTTTAACTTCCTGATCCACCAGATATCTTTTCTGCAAGTGCTCCTTCTGATTCGACAAATGGAACATAGCAACACCCAATCAGTAGGACTACCTCTCTCTCTCTCCTCCCCCCCGTCTCTTATAAAGACTAGAGTGACATGTGATATCATTTTTCTAGGGAGCTGCGAAAGTTTCAATTCTGATGATTGGACAACAGGCTATCATGGATGCTTATCTTTGTCTTTTGCATCTGACCGCAGG-GATACTTGTTG</genome_strand>
        <mrna_strand>AACAAATAGCTCTTCCAGGTTTCCTGATTTTAGGAAGTCCAATGGCAACTCGGTCCTTGAATTGATAAGTAATCCAACAAAAATAACTGGTGTACATTATATTCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCAATAATTTTCCATGATGTGTTTGACAATGAACATGGAGTTGGTGCTGCACAAATAAGGGTAGAAGGTGTATATATATGGCCATTTAGACAACTTCGAATGGTAGCTTACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAAAGATGGTGAGTTTGGACAGGAAGACGATTATCTATTATCAAATCCATATCACTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGGAGTTTTCTCGTCCCAGATATTCCAGGAGTCTTCTCGAGATAAGATTTGGAAAAAGAAACACT..................................................................................CACCGTTTTACGAGATGGAGAAAAATTGTAATATAGAAATTGCTGCACAAATTGCTCGTGTCTCATCCTCCTCAAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAGCTCGTGACCATTATCAACTAGAAGGATTGATAGAGAGCCCTTCAGTGGATGCTGACGGGGACTGTTTCTCACCGATGCTTTTGAATGCTACTTCTGTCAATATAGAGGTTTACTACAACAAAGCGGTGAACTACACATTGATGGTCACATTT........................................................................................ATATCTTTTCTGCAAGTGCTCCTTCTGATTCGACAAATGGAACATAGCAACACCCAATCA............................................................................NGAGCTGCGAAAGTTTCAATTCTGATGATTGGACAACANGCTATCATGGATGCTTATCTTTGTCTTTTGCATCTGACCGCAGGNNATAC-TGNTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E289062" ref_strand="+" ref_description="SGN-E289062 	[cLES-18-K17]">
      <seq>agattgtataattgtttttgaataaagaaatacaagtggagttttctggttgttgaattgactagggaagggattcttggtgaaccacaaatcaacaaaaccaatgattctgtttatgttgagctttcattttctttgaagttgatttttgttgttgaggttgttgttttatgttgtttgacttcaatttaagcaaccccttttctttctttctcttaaagttgtctcttttttttgggaaattgtaactgtaatggactttgtttcttcatctgtgttgctcaagaattgcttggaagtgaagaatttgaattgatcttgaatgggtatggcaaaaagattatattttttgaggtttaagaggaaaaagtatggagttttgcttagagttctttttagtttatggttcatccttgaagggatttgcccagtaatgggtgtcaggcctctcagagaaagataccgttcgtggggagatgagtggcttcgggtaagaaaggatgagaatgaattggggcctttttctgcttggaatataacaggaacttac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="69500" stop="67261"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69200" g_stop="68720" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68719" i_stop="67630" i_length="1090">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67629" g_stop="67561" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="550" r_length="69" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E289062" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>550</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E289062" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69200" e_stop="68720"/>
          <exon e_start="67629" e_stop="67561"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTGTATAATTGTTTTTGAATAAAGAAATACAAGTGGAGTTTTCTGGTTGTTGAATTGACTAGGGAAGGGATTCTTGGTGAACCACAAATCAACAAAACCAATGATTCTGTTTATGTTGAGCTTTCATTTTCTTTGAAGTTGATTTTTGTTGTTGAGGTTGTTGTTTTATGTTGTTTGACTTCAATTTAAGCAACCCCTTTTCTTTCTTTCTCTTAAAGTTGTCTCTTTTTTTTGGGAAATTGTAACTGTAATGGACTTTGTTTCTTCATCTGTGTTGCTCAAGAATTGCTTGGAAGTGAAGAATTTGAATTGATCTTGAATGGGTATGGCAAAAAGATTATATTTTTTGAGGTTTAAGAGGAAAAAGTATGGAGTTTTGCTTAGAGTTCTTTTTAGTTTATGGTTCATCCTTGAAGGGATTTGCCCAGTAATGGGTGTCAGGCCTCTCAGAGAAAGATACCGTTCGTGGGGAGATGAGGTTAGTATTGGAGTTACATTTTGTATCTGCACTTCCTTGTGTAATTTGTGCCTTCTAAGGATCAATTATCTGGTATTGGAGTGAAATTGGTCCAACTAGTGGAAAGAGTACAGCCTAACAGCTCAATGGAGTATGTGACAGTAAAGATTGCTACTTTAATTTTGAATTATGTATTATTTGTTGTTGCTATTGTTCTGTTCCCCAGTATTGTTACTTTACATACTTATTGTTTGTTATGCTTTACTTGAGCTGAGGGTCTACCGGATACAACCTCTTTGCCTTCACAAGGGAGTAGGGGTAAGGTTGCGTAAGATCATCCTCCCCAAACATAACTTGTGGGATTACAATGGGTTTGTTGTTATTGTATTAAAAACTGAAACTTTACTCATTCAAGTGCTCAAGTGATGAAGTGCAACTTGTGTTAGCTAGCTGGTGAAAGGAATTCCAAGCTATTTGCTTAACCTGTATCTGATAGGTTTAGTGCTTCATACTTTATACATCTTACTAAACACAAGTCAGTTTATCATGCATAAGAGCAATGATGGATTTATATTTTGGACATTGTACAATGAGGAGATATGGCAATGAAATGATATAACTAGCAAGAAATAATATGCTTTTATGTGTCCCCTTTTTTAATAAGGAACTTGCTCTTATGAATATACTTCATTATCGTGAGAAAACACTGAATAAGGTAGGATTTTCTAAGGACTGTTTCATGTTTATGCCTAGAGCCAAGATATCTGTCACTCCAATCAATGCTGGACACCGAAAAGAAAATCAGGGATGACGAAATGGCTGGATAAGTTCAGTTAATGAGATATGAAAATATTACTGGATAATTCAGTAAATGAGGTATGAAATTATTCTAACACCTAGTTAAGACTGGATATCAAAAGTTCACTAGGAAACTGTATTGAATCAAGTTCGACGCTAGCTATATTTGGTTTCTTGGTGATTAAGATCAAGGTTACTATCCTAATTCAGTTATAACTTCTTGGAGCTCATTGCTAGAATTGGATAAGTCATGTTATGTGTTCTCCCTGCTGTTCATGCCTAACCATTAATTATATCCTTATTGTTGTTGCAGTGGCTTCTGGTAAGAAAGGATGAGAATGAATTGGGGCCTTTTTCTGCTTGGAATATAACAGGAACTTAC</genome_strand>
        <mrna_strand>AGATTGTATAATTGTTTTTGAATAAAGAAATACAAGTGGAGTTTTCTGGTTGTTGAATTGACTAGGGAAGGGATTCTTGGTGAACCACAAATCAACAAAACCAATGATTCTGTTTATGTTGAGCTTTCATTTTCTTTGAAGTTGATTTTTGTTGTTGAGGTTGTTGTTTTATGTTGTTTGACTTCAATTTAAGCAACCCCTTTTCTTTCTTTCTCTTAAAGTTGTCTCTTTTTTTTGGGAAATTGTAACTGTAATGGACTTTGTTTCTTCATCTGTGTTGCTCAAGAATTGCTTGGAAGTGAAGAATTTGAATTGATCTTGAATGGGTATGGCAAAAAGATTATATTTTTTGAGGTTTAAGAGGAAAAAGTATGGAGTTTTGCTTAGAGTTCTTTTTAGTTTATGGTTCATCCTTGAAGGGATTTGCCCAGTAATGGGTGTCAGGCCTCTCAGAGAAAGATACCGTTCGTGGGGAGATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTTCGGGTAAGAAAGGATGAGAATGAATTGGGGCCTTTTTCTGCTTGGAATATAACAGGAACTTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E373221" ref_strand="+" ref_description="SGN-E373221 	[TUS-31-B17]">
      <seq>agattgtataattgtttttgaataaagaaatacaagtggagttttctggttgttgaattgactagggaagggattcttggtgaaccacaaatcaacaaaaccaatgattctgtttatgttgagctttcattttctttgaagttgatttttgttgttgaggttgttgttttatgttgtttgacttcaatttaagcaaccccttttctttctttctcttaaagttgtctcttttttttgggaaattgtaactgtaatggactttgtttcttcatctgtgttgctcaagaattgcttggaagtgaagaatttgaattgatcttgaatgggtatggcaaaaagattatattttttgaggtttaagaggaaaaagtatggagttttgcttagagttctttttagtttatggttcatccttgaagggatttgcccagtaatgggtgtcaggcctctcagagaaagataccgttcgtggggagatgagtggcttcagataagagaggatgagaatgaattggggcctttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="69500" stop="67286"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69200" g_stop="68720" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="68719" i_stop="67630" i_length="1090">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.93"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67629" g_stop="67586" g_length="44"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="525" r_length="44" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E373221" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E373221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69200" e_stop="68720"/>
          <exon e_start="67629" e_stop="67586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTGTATAATTGTTTTTGAATAAAGAAATACAAGTGGAGTTTTCTGGTTGTTGAATTGACTAGGGAAGGGATTCTTGGTGAACCACAAATCAACAAAACCAATGATTCTGTTTATGTTGAGCTTTCATTTTCTTTGAAGTTGATTTTTGTTGTTGAGGTTGTTGTTTTATGTTGTTTGACTTCAATTTAAGCAACCCCTTTTCTTTCTTTCTCTTAAAGTTGTCTCTTTTTTTTGGGAAATTGTAACTGTAATGGACTTTGTTTCTTCATCTGTGTTGCTCAAGAATTGCTTGGAAGTGAAGAATTTGAATTGATCTTGAATGGGTATGGCAAAAAGATTATATTTTTTGAGGTTTAAGAGGAAAAAGTATGGAGTTTTGCTTAGAGTTCTTTTTAGTTTATGGTTCATCCTTGAAGGGATTTGCCCAGTAATGGGTGTCAGGCCTCTCAGAGAAAGATACCGTTCGTGGGGAGATGAGGTTAGTATTGGAGTTACATTTTGTATCTGCACTTCCTTGTGTAATTTGTGCCTTCTAAGGATCAATTATCTGGTATTGGAGTGAAATTGGTCCAACTAGTGGAAAGAGTACAGCCTAACAGCTCAATGGAGTATGTGACAGTAAAGATTGCTACTTTAATTTTGAATTATGTATTATTTGTTGTTGCTATTGTTCTGTTCCCCAGTATTGTTACTTTACATACTTATTGTTTGTTATGCTTTACTTGAGCTGAGGGTCTACCGGATACAACCTCTTTGCCTTCACAAGGGAGTAGGGGTAAGGTTGCGTAAGATCATCCTCCCCAAACATAACTTGTGGGATTACAATGGGTTTGTTGTTATTGTATTAAAAACTGAAACTTTACTCATTCAAGTGCTCAAGTGATGAAGTGCAACTTGTGTTAGCTAGCTGGTGAAAGGAATTCCAAGCTATTTGCTTAACCTGTATCTGATAGGTTTAGTGCTTCATACTTTATACATCTTACTAAACACAAGTCAGTTTATCATGCATAAGAGCAATGATGGATTTATATTTTGGACATTGTACAATGAGGAGATATGGCAATGAAATGATATAACTAGCAAGAAATAATATGCTTTTATGTGTCCCCTTTTTTAATAAGGAACTTGCTCTTATGAATATACTTCATTATCGTGAGAAAACACTGAATAAGGTAGGATTTTCTAAGGACTGTTTCATGTTTATGCCTAGAGCCAAGATATCTGTCACTCCAATCAATGCTGGACACCGAAAAGAAAATCAGGGATGACGAAATGGCTGGATAAGTTCAGTTAATGAGATATGAAAATATTACTGGATAATTCAGTAAATGAGGTATGAAATTATTCTAACACCTAGTTAAGACTGGATATCAAAAGTTCACTAGGAAACTGTATTGAATCAAGTTCGACGCTAGCTATATTTGGTTTCTTGGTGATTAAGATCAAGGTTACTATCCTAATTCAGTTATAACTTCTTGGAGCTCATTGCTAGAATTGGATAAGTCATGTTATGTGTTCTCCCTGCTGTTCATGCCTAACCATTAATTATATCCTTATTGTTGTTGCAGTGGCTTCTGGTAAGAAAGGATGAGAATGAATTGGGGCCTTTTTC</genome_strand>
        <mrna_strand>AGATTGTATAATTGTTTTTGAATAAAGAAATACAAGTGGAGTTTTCTGGTTGTTGAATTGACTAGGGAAGGGATTCTTGGTGAACCACAAATCAACAAAACCAATGATTCTGTTTATGTTGAGCTTTCATTTTCTTTGAAGTTGATTTTTGTTGTTGAGGTTGTTGTTTTATGTTGTTTGACTTCAATTTAAGCAACCCCTTTTCTTTCTTTCTCTTAAAGTTGTCTCTTTTTTTTGGGAAATTGTAACTGTAATGGACTTTGTTTCTTCATCTGTGTTGCTCAAGAATTGCTTGGAAGTGAAGAATTTGAATTGATCTTGAATGGGTATGGCAAAAAGATTATATTTTTTGAGGTTTAAGAGGAAAAAGTATGGAGTTTTGCTTAGAGTTCTTTTTAGTTTATGGTTCATCCTTGAAGGGATTTGCCCAGTAATGGGTGTCAGGCCTCTCAGAGAAAGATACCGTTCGTGGGGAGATGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTTCAGATAAGAGAGGATGAGAATGAATTGGGGCCTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E323518" ref_strand="+" ref_description="SGN-E323518 	[cTOC-7-K18]">
      <seq>aatttaggagaagactaatgttaaatgatctttagcttatttttttactttctgcagaactgaaaacaccccaactatgttatttatagattgtataattgtttttgaataaagaaatacaagtggagttttctggttgttgaattgactagggaagggattcttggtgaaccacaaatcaacaaaaccaatgattctgtttatgttgagctttcattttctttgaagttgatttttgttgttgaggttgttgttttatgttgtttgacttcaatttaagcaaccccttttctttctttctcttaaagttgtctcttttttttgggaaattgtaactgtaatggactttgtttcttcatctgtgttgctcaagaattgcttggaagtgaagaatttgaattgatcttgaatgggtatggcaaaaagattatattttttgaggtttaagaggaaaaagtatggagttttgcttagagttctttttagtttatggttcatccttgaagggatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="69587" stop="68475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69287" g_stop="68775" g_length="513"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="513" r_length="513" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E323518" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>513</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E323518" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69287" e_stop="68775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTAGGAGAAGACTAATGTTAAATGATCTTTAGCTTATTTTTTTACTTTCTGCAGAACTGAAAACACCCCAACTATGTTATTTATAGATTGTATAATTGTTTTTGAATAAAGAAATACAAGTGGAGTTTTCTGGTTGTTGAATTGACTAGGGAAGGGATTCTTGGTGAACCACAAATCAACAAAACCAATGATTCTGTTTATGTTGAGCTTTCATTTTCTTTGAAGTTGATTTTTGTTGTTGAGGTTGTTGTTTTATGTTGTTTGACTTCAATTTAAGCAACCCCTTTTCTTTCTTTCTCTTAAAGTTGTCTCTTTTTTTTGGGAAATTGTAACTGTAATGGACTTTGTTTCTTCATCTGTGTTGCTCAAGAATTGCTTGGAAGTGAAGAATTTGAATTGATCTTGAATGGGTATGGCAAAAAGATTATATTTTTTGAGGTTTAAGAGGAAAAAGTATGGAGTTTTGCTTAGAGTTCTTTTTAGTTTATGGTTCATCCTTGAAGGGATTTG</genome_strand>
        <mrna_strand>AATTTAGGAGAAGACTAATGTTAAATGATCTTTAGCTTATTTTTTTACTTTCTGCAGAACTGAAAACACCCCAACTATGTTATTTATAGATTGTATAATTGTTTTTGAATAAAGAAATACAAGTGGAGTTTTCTGGTTGTTGAATTGACTAGGGAAGGGATTCTTGGTGAACCACAAATCAACAAAACCAATGATTCTGTTTATGTTGAGCTTTCATTTTCTTTGAAGTTGATTTTTGTTGTTGAGGTTGTTGTTTTATGTTGTTTGACTTCAATTTAAGCAACCCCTTTTCTTTCTTTCTCTTAAAGTTGTCTCTTTTTTTTGGGAAATTGTAACTGTAATGGACTTTGTTTCTTCATCTGTGTTGCTCAAGAATTGCTTGGAAGTGAAGAATTTGAATTGATCTTGAATGGGTATGGCAAAAAGATTATATTTTTTGAGGTTTAAGAGGAAAAAGTATGGAGTTTTGCTTAGAGTTCTTTTTAGTTTATGGTTCATCCTTGAAGGGATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E211451" ref_strand="+" ref_description="SGN-E211451 	[cLEC-67-O24]">
      <seq>ttaaaaacactcatacaccatttcattttcattgttcgttggctgattaatttaatttcatatcgagtaggccaattaaaacgaaaaactctcccttctcagacttgaagtcagagacttctgattaaggatcgagagatatcaacgttcatagcaaaaacacgttaaattggtgctctgccttgttttttttgtgtccaattatggctttccttaggtgctttgggtacaacgtaaggcgcggtggacttactgatgttcgtgtatttgcagaaggtgataaagaagatgaatcagataacacaatgattgctgatgcaacgagatatacaagccaagagttgaagaaattcaccgcaaatttctccaattccaatttaattgcctgtggtggatttagcagagtttatttagcgaacttccctgatttatctcccagggctgtaaaaatcatggacagcagcagcgagcgtctcaatggaatgtacaagcaagaattagatatcttgattcaaatcaaacacgacaacatagttaaactttttgatcactgtgaagataatgaattcggaaacatgctcgtgtttgagtatgtctcaaatggtactctacaggacaaactccacgaaaacagagataggacaattctttcgtggagaaaccgaatgggtgtggcatttcaacttgctcaagctattgagtatctaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="76912" stop="75604"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76612" g_stop="75904" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E211451" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E211451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76612" e_stop="75904"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAAACACTCATACACCATTTCATTTTCATTGTTCGTTGGCTGATTAATTTAATTTCATATCGAGTAGGCCAATTAAAACGAAAAACTCTCCCTTCTCAGACTTGAAGTCAGAGACTTCTGATTAAGGATCGAGAGATATCAACGTTCATAGCAAAAACACGTTAAATTGGTGCTCTGCCTTGTTTTTTTTGTGTCCAATTATGGCTTTCCTTAGGTGCTTTGGGTACAACGTAAGGCGCGGTGGACTTACTGATGTTCGTGTATTTGCAGAAGGTGATAAAGAAGATGAATCAGATAACACAATGATTGCTGATGCAACGAGATATACAAGCCAAGAGTTGAAGAAATTCACCGCAAATTTCTCCAATTCCAATTTAATTGCCTGTGGTGGATTTAGCAGAGTTTATTTAGCGAACTTCCCTGATTTATCTCCCAGGGCTGTAAAAATCATGGACAGCAGCAGCGAGCGTCTCAATGGAATGTACAAGCAAGAATTAGATATCTTGATTCAAATCAAACACGACAACATAGTTAAACTTTTTGATCACTGTGAAGATAATGAATTCGGAAACATGCTCGTGTTTGAGTATGTCTCAAATGGTACTCTACAGGACAAACTCCACGAAAACAGAGATAGGACAATTCTTTCGTGGAGAAACCGAATGGGTGTGGCATTTCAACTTGCTCAAGCTATTGAGTATCTACA</genome_strand>
        <mrna_strand>TTAAAAACACTCATACACCATTTCATTTTCATTGTTCGTTGGCTGATTAATTTAATTTCATATCGAGTAGGCCAATTAAAACGAAAAACTCTCCCTTCTCAGACTTGAAGTCAGAGACTTCTGATTAAGGATCGAGAGATATCAACGTTCATAGCAAAAACACGTTAAATTGGTGCTCTGCCTTGTTTTTTTTGTGTCCAATTATGGCTTTCCTTAGGTGCTTTGGGTACAACGTAAGGCGCGGTGGACTTACTGATGTTCGTGTATTTGCAGAAGGTGATAAAGAAGATGAATCAGATAACACAATGATTGCTGATGCAACGAGATATACAAGCCAAGAGTTGAAGAAATTCACCGCAAATTTCTCCAATTCCAATTTAATTGCCTGTGGTGGATTTAGCAGAGTTTATTTAGCGAACTTCCCTGATTTATCTCCCAGGGCTGTAAAAATCATGGACAGCAGCAGCGAGCGTCTCAATGGAATGTACAAGCAAGAATTAGATATCTTGATTCAAATCAAACACGACAACATAGTTAAACTTTTTGATCACTGTGAAGATAATGAATTCGGAAACATGCTCGTGTTTGAGTATGTCTCAAATGGTACTCTACAGGACAAACTCCACGAAAACAGAGATAGGACAATTCTTTCGTGGAGAAACCGAATGGGTGTGGCATTTCAACTTGCTCAAGCTATTGAGTATCTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E203603" ref_strand="+" ref_description="SGN-E203603 	[cLEC-15-G12]">
      <seq>tttcattttcattgttcggtggctgattaatttaatttcatatcgagtaggccaattaaaacgaaaaactctcccttctcagacttgaagtcagagacttctgattaaggatcgagagatatcaacgttcatagcaaaaacacgttaaattggtgctctgccttgtttttttttgtgtccaattatggctttccttaggtgctttgggtacaacgtaaggcgcggtggacttactgatgttcgtgtatttgccgaaggtgataaagaagatgaatcagataacacaatgattgctgatgcaacgagatatacaagccaagagttgaagaaattcaccgcacatttctccaattccaatttaattgcctgtggtggatttagcagagtttatttagcgaacttccctgatttatctcccacggctgtaaaaatcatggacagcagcagcgagcgtctcaatggaatgtgcaagcaagaattagatatcttgattcaaatcaaacacgacgacatagttaaactttttgatcactgtgaagataatgaattcggaaacatgctcgtgtttgagtatgtctcaaaaggtactctacaggacaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="76892" stop="75693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76592" g_stop="75993" g_length="600"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E203603" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203603" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76592" e_stop="75993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCATTTTCATTGTTCGTTGGCTGATTAATTTAATTTCATATCGAGTAGGCCAATTAAAACGAAAAACTCTCCCTTCTCAGACTTGAAGTCAGAGACTTCTGATTAAGGATCGAGAGATATCAACGTTCATAGCAAAAACACGTTAAATTGGTGCTCTGCCTTG-TTTTTTTTGTGTCCAATTATGGCTTTCCTTAGGTGCTTTGGGTACAACGTAAGGCGCGGTGGACTTACTGATGTTCGTGTATTTGCAGAAGGTGATAAAGAAGATGAATCAGATAACACAATGATTGCTGATGCAACGAGATATACAAGCCAAGAGTTGAAGAAATTCACCGCAAATTTCTCCAATTCCAATTTAATTGCCTGTGGTGGATTTAGCAGAGTTTATTTAGCGAACTTCCCTGATTTATCTCCCAGGGCTGTAAAAATCATGGACAGCAGCAGCGAGCGTCTCAATGGAATGTACAAGCAAGAATTAGATATCTTGATTCAAATCAAACACGACAACATAGTTAAACTTTTTGATCACTGTGAAGATAATGAATTCGGAAACATGCTCGTGTTTGAGTATGTCTCAAATGGTACTCTACAGGACAAA</genome_strand>
        <mrna_strand>TTTCATTTTCATTGTTCGGTGGCTGATTAATTTAATTTCATATCGAGTAGGCCAATTAAAACGAAAAACTCTCCCTTCTCAGACTTGAAGTCAGAGACTTCTGATTAAGGATCGAGAGATATCAACGTTCATAGCAAAAACACGTTAAATTGGTGCTCTGCCTTGTTTTTTTTTGTGTCCAATTATGGCTTTCCTTAGGTGCTTTGGGTACAACGTAAGGCGCGGTGGACTTACTGATGTTCGTGTATTTGCCGAAGGTGATAAAGAAGATGAATCAGATAACACAATGATTGCTGATGCAACGAGATATACAAGCCAAGAGTTGAAGAAATTCACCGCACATTTCTCCAATTCCAATTTAATTGCCTGTGGTGGATTTAGCAGAGTTTATTTAGCGAACTTCCCTGATTTATCTCCCACGGCTGTAAAAATCATGGACAGCAGCAGCGAGCGTCTCAATGGAATGTGCAAGCAAGAATTAGATATCTTGATTCAAATCAAACACGACGACATAGTTAAACTTTTTGATCACTGTGAAGATAATGAATTCGGAAACATGCTCGTGTTTGAGTATGTCTCAAAAGGTACTCTACAGGACAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E212849" ref_strand="+" ref_description="SGN-E212849 	[cLEC-73-K24]">
      <seq>tttaatttcatatcgagtaggccaattaaaacgaaaaactctcccttctcagacttgaagtcagagacttctgattaaggatcgagagatatcaacgttcatagcaaaaacacgttaaattggtgctctgccttgttttttttgtgtccaattatggctttccttaggtgctttgggtacaacgtaaggcgcggtggacttactgatgttcgtgtatttgcagaaggtgataaagaagatgaatcagataacacaatgattgctgatgcaacgagatatacaagccaagagttgaagaaattcaccgcaaatttctccaattccaatttaattgcctgtggtggatttagcagagtttatttagcgaacttccctgatttatctcccagggctgtaaaaatcatggacagcagcagcgagcgtctcaatggaatgtacaagcaagaattagatatcttgattccaatcaaacacgacaacatagttaaactttttgatcactgtgaagataatgaattcggaaacatgctcgtgtttgagtatgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="76862" stop="75717"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76562" g_stop="76017" g_length="546"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="546" r_length="546" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E212849" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>546</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E212849" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76562" e_stop="76017"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAATTTCATATCGAGTAGGCCAATTAAAACGAAAAACTCTCCCTTCTCAGACTTGAAGTCAGAGACTTCTGATTAAGGATCGAGAGATATCAACGTTCATAGCAAAAACACGTTAAATTGGTGCTCTGCCTTGTTTTTTTTGTGTCCAATTATGGCTTTCCTTAGGTGCTTTGGGTACAACGTAAGGCGCGGTGGACTTACTGATGTTCGTGTATTTGCAGAAGGTGATAAAGAAGATGAATCAGATAACACAATGATTGCTGATGCAACGAGATATACAAGCCAAGAGTTGAAGAAATTCACCGCAAATTTCTCCAATTCCAATTTAATTGCCTGTGGTGGATTTAGCAGAGTTTATTTAGCGAACTTCCCTGATTTATCTCCCAGGGCTGTAAAAATCATGGACAGCAGCAGCGAGCGTCTCAATGGAATGTACAAGCAAGAATTAGATATCTTGATTCAAATCAAACACGACAACATAGTTAAACTTTTTGATCACTGTGAAGATAATGAATTCGGAAACATGCTCGTGTTTGAGTATGTC</genome_strand>
        <mrna_strand>TTTAATTTCATATCGAGTAGGCCAATTAAAACGAAAAACTCTCCCTTCTCAGACTTGAAGTCAGAGACTTCTGATTAAGGATCGAGAGATATCAACGTTCATAGCAAAAACACGTTAAATTGGTGCTCTGCCTTGTTTTTTTTGTGTCCAATTATGGCTTTCCTTAGGTGCTTTGGGTACAACGTAAGGCGCGGTGGACTTACTGATGTTCGTGTATTTGCAGAAGGTGATAAAGAAGATGAATCAGATAACACAATGATTGCTGATGCAACGAGATATACAAGCCAAGAGTTGAAGAAATTCACCGCAAATTTCTCCAATTCCAATTTAATTGCCTGTGGTGGATTTAGCAGAGTTTATTTAGCGAACTTCCCTGATTTATCTCCCAGGGCTGTAAAAATCATGGACAGCAGCAGCGAGCGTCTCAATGGAATGTACAAGCAAGAATTAGATATCTTGATTCCAATCAAACACGACAACATAGTTAAACTTTTTGATCACTGTGAAGATAATGAATTCGGAAACATGCTCGTGTTTGAGTATGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E231240" ref_strand="+" ref_description="SGN-E231240 	[cLED-5-J3]">
      <seq>aaataagaacatggatcaaaataattttatggtatcgccaattgtgattattcaagtaactaaatttgaatgtggtggcctagctttatcattcagtgtttcacaccctgcaatggatggtttcacaggtttgcaatttctatttggttggggaaaagtgtgtagattgggaactcccatcgataagattcatttcctaagcttcaatttaggtaatattttcccaacaagagatacatcagctcttttcaactcagccgacgtagtaaatagagaagaaaatattgttgttaagagattcgttgttcgtgaagctgctctatcaaggctcaaaaaacaatgcattgatgaatcaggcggagctttgacttttcaaccttcaagggttgaaatagttacagcaatcctatggagggcttttatccgcgcttcagcagctagaaatgggtttgttagaccttctctaatggacttcccattgaatttacgctctaaatcatctntacctcaagtaaaaacctctatgggaaatttcagaatcgatgttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="85761" stop="84613"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85461" g_stop="84913" g_length="549"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="549" r_length="549" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E231240" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>549</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E231240" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85461" e_stop="84913"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAGAACATGGATCAAAATAATTTTATGGTATCGCCAATTGTGATTATTCAAGTAACTAAATTTGAATGTGGTGGCCTAGCTTTATCATTCAGTGTTTCACACCCTGCAATGGATGGTTTCACAGGTTTGCAATTTCTATTTGGTTGGGGAAAAGTGTGTAGATTGGGAACTCCCATCGATAAGATTCATTTCCTAAGCTTCAATTTAGGTAATATTTTCCCAACAAGAGATACATCAGCTCTTTTCAACTCAGCCGACGTAGTAAATAGAGAAGAAAATATTGTTGTTAAGAGATTCGTTGTTCGTGAAGCTGCTCTATCAAGGCTCAAAAAACAATGCATTGATGAATCAGGCGGAGCTTTGACTTTTCAACCTTCAAGGGTTGAAATAGTTACAGCAATCCTATGGAGGGCTTTTATCCGCGCTTCAGCAGCTAGAAATGGGTTTGTTAGACCTTCTCTAATGGACTTCCCATTGAATTTACGCTCTAAATCATCTTTACCTCAAGTAAAAACCTCTATGGGAAATTTCAGAATCGATGTTCC</genome_strand>
        <mrna_strand>AAATAAGAACATGGATCAAAATAATTTTATGGTATCGCCAATTGTGATTATTCAAGTAACTAAATTTGAATGTGGTGGCCTAGCTTTATCATTCAGTGTTTCACACCCTGCAATGGATGGTTTCACAGGTTTGCAATTTCTATTTGGTTGGGGAAAAGTGTGTAGATTGGGAACTCCCATCGATAAGATTCATTTCCTAAGCTTCAATTTAGGTAATATTTTCCCAACAAGAGATACATCAGCTCTTTTCAACTCAGCCGACGTAGTAAATAGAGAAGAAAATATTGTTGTTAAGAGATTCGTTGTTCGTGAAGCTGCTCTATCAAGGCTCAAAAAACAATGCATTGATGAATCAGGCGGAGCTTTGACTTTTCAACCTTCAAGGGTTGAAATAGTTACAGCAATCCTATGGAGGGCTTTTATCCGCGCTTCAGCAGCTAGAAATGGGTTTGTTAGACCTTCTCTAATGGACTTCCCATTGAATTTACGCTCTAAATCATCTNTACCTCAAGTAAAAACCTCTATGGGAAATTTCAGAATCGATGTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E228088" ref_strand="+" ref_description="SGN-E228088 	[cLED-2-H21]">
      <seq>aaataagaacatggatcaaaataattttatggtatcgccaattgtgattattcaagtaactaaatttgaatgtggtggcctagctttatcattcagtgtttcacaccctgcaatggatggtttcacaggtttgcaatttctatttggttggggaaaagtgtgtagattgggaactcccatcgataagattcatttcctaagcttcaatttaggtaatattttcccaacaagagatacatcagctcttttcaactcagccgacgtagtaaatagagaagaaaatattgttgttaagagattcgttgttcgtgaagctgctctatcaaggctcaaaaaacaatgcattgatgaatcaggcggagctttgacttttcaaccttcaagggttgaaatagttacagcaatcctatggagggcttttatccgcgcttcagcagctagaaatgggtttgttagaccttctctaatggacttcccattgaatttacgctctaaatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="85761" stop="84661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85461" g_stop="84961" g_length="501"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="501" r_length="501" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E228088" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>501</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E228088" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85461" e_stop="84961"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATAAGAACATGGATCAAAATAATTTTATGGTATCGCCAATTGTGATTATTCAAGTAACTAAATTTGAATGTGGTGGCCTAGCTTTATCATTCAGTGTTTCACACCCTGCAATGGATGGTTTCACAGGTTTGCAATTTCTATTTGGTTGGGGAAAAGTGTGTAGATTGGGAACTCCCATCGATAAGATTCATTTCCTAAGCTTCAATTTAGGTAATATTTTCCCAACAAGAGATACATCAGCTCTTTTCAACTCAGCCGACGTAGTAAATAGAGAAGAAAATATTGTTGTTAAGAGATTCGTTGTTCGTGAAGCTGCTCTATCAAGGCTCAAAAAACAATGCATTGATGAATCAGGCGGAGCTTTGACTTTTCAACCTTCAAGGGTTGAAATAGTTACAGCAATCCTATGGAGGGCTTTTATCCGCGCTTCAGCAGCTAGAAATGGGTTTGTTAGACCTTCTCTAATGGACTTCCCATTGAATTTACGCTCTAAATCATC</genome_strand>
        <mrna_strand>AAATAAGAACATGGATCAAAATAATTTTATGGTATCGCCAATTGTGATTATTCAAGTAACTAAATTTGAATGTGGTGGCCTAGCTTTATCATTCAGTGTTTCACACCCTGCAATGGATGGTTTCACAGGTTTGCAATTTCTATTTGGTTGGGGAAAAGTGTGTAGATTGGGAACTCCCATCGATAAGATTCATTTCCTAAGCTTCAATTTAGGTAATATTTTCCCAACAAGAGATACATCAGCTCTTTTCAACTCAGCCGACGTAGTAAATAGAGAAGAAAATATTGTTGTTAAGAGATTCGTTGTTCGTGAAGCTGCTCTATCAAGGCTCAAAAAACAATGCATTGATGAATCAGGCGGAGCTTTGACTTTTCAACCTTCAAGGGTTGAAATAGTTACAGCAATCCTATGGAGGGCTTTTATCCGCGCTTCAGCAGCTAGAAATGGGTTTGTTAGACCTTCTCTAATGGACTTCCCATTGAATTTACGCTCTAAATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E324734" ref_strand="+" ref_description="SGN-E324734 	[cTOC-8-F22]">
      <seq>acgttacaagctctctttctttgatcaaattgctgagagagagcacattcctgttgttcttttctatccttataataatattaatagccacactatcgatgaacgtcttgagaaatccctttctgatgtattaactcatgtttatccagcagcaggaaggtatgacgacaacgctgaatgttcgattctctgtcttgatcaaggtgtttcctataccaaagccaaggtcaattgtaagcttggtaatttcttagagaaaacacgcaaggatttgagtgttgcaactttatttgggccacatgaaaataagaacatggatcaaaataattttatggtatcgccaattgtgattattcaagtaactaaatttgaatgtggtggcctagctttatcattcagtgtttcacaccctgcaatggatggtttcacaggtttgcaatttctatttggttggggaaaagtgtgtagattgggaactcccatcgataagattcattttcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="86064" stop="84963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85764" g_stop="85263" g_length="502"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="502" r_length="502" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E324734" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>502</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324734" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85764" e_stop="85263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTTACAAGCTCTCTTTCTTTGATCAAATTGCTGAGAGAGAGCACATTCCTGTTGTTCTTTTCTATCCTTATAATAATATTAATAGCCACACTATCGATGAACGTCTTGAGAAATCCCTTTCTGATGTATTAACTCATGTTTATCCAGCAGCAGGAAGGTATGACGACAACGCTGAATGTTCGATTCTCTGTCTTGATCAAGGTGTTTCCTATACCAAAGCCAAGGTCAATTGTAAGCTTGGTAATTTCTTAGAGAAAACACGCAAGGATTTGAGTGTTGCAACTTTATTTGGGCCACATGAAAATAAGAACATGGATCAAAATAATTTTATGGTATCGCCAATTGTGATTATTCAAGTAACTAAATTTGAATGTGGTGGCCTAGCTTTATCATTCAGTGTTTCACACCCTGCAATGGATGGTTTCACAGGTTTGCAATTTCTATTTGGTTGGGGAAAAGTGTGTAGATTGGGAACTCCCATCGATAAGATTCATTTCCTA</genome_strand>
        <mrna_strand>ACGTTACAAGCTCTCTTTCTTTGATCAAATTGCTGAGAGAGAGCACATTCCTGTTGTTCTTTTCTATCCTTATAATAATATTAATAGCCACACTATCGATGAACGTCTTGAGAAATCCCTTTCTGATGTATTAACTCATGTTTATCCAGCAGCAGGAAGGTATGACGACAACGCTGAATGTTCGATTCTCTGTCTTGATCAAGGTGTTTCCTATACCAAAGCCAAGGTCAATTGTAAGCTTGGTAATTTCTTAGAGAAAACACGCAAGGATTTGAGTGTTGCAACTTTATTTGGGCCACATGAAAATAAGAACATGGATCAAAATAATTTTATGGTATCGCCAATTGTGATTATTCAAGTAACTAAATTTGAATGTGGTGGCCTAGCTTTATCATTCAGTGTTTCACACCCTGCAATGGATGGTTTCACAGGTTTGCAATTTCTATTTGGTTGGGGAAAAGTGTGTAGATTGGGAACTCCCATCGATAAGATTCATTTTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E238191" ref_strand="+" ref_description="SGN-E238191 	[cLED-22-K9]">
      <seq>ccagcctacaccctctcagaatcaacgttacaagctctctttctttgatcaaattgctgagagagagcacattcctgttgttcttttctatccttataataatattaatagccacactatcgatgaacgtcttgagaaatccctttctgatgtattaactcatgtttatccagcagcaggaaggtatgacgacaacgctgaatgttcgattctctgtcttgatcaaggtgtttcctataccaaagccaaggtcaattgttagcttggtaatttcttagagaaaacacgcaaggatttgagtgttgctactttatttgggccacatgaaaataagaacatggatcaaaataattttatggtatcgccaattgtgattattcaagtaactaaatttgaatgtggtggcctagctatatcattcagtgtttcacaccctgcaatggacggtttcacaggtttgcaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="86086" stop="85024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85787" g_stop="85324" g_length="464"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="465" r_length="465" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E238191" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238191" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85787" e_stop="85324"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCA-CCTACACCCTCTCAGAATCAACGTTACAAGCTCTCTTTCTTTGATCAAATTGCTGAGAGAGAGCACATTCCTGTTGTTCTTTTCTATCCTTATAATAATATTAATAGCCACACTATCGATGAACGTCTTGAGAAATCCCTTTCTGATGTATTAACTCATGTTTATCCAGCAGCAGGAAGGTATGACGACAACGCTGAATGTTCGATTCTCTGTCTTGATCAAGGTGTTTCCTATACCAAAGCCAAGGTCAATTGTAAGCTTGGTAATTTCTTAGAGAAAACACGCAAGGATTTGAGTGTTGCAACTTTATTTGGGCCACATGAAAATAAGAACATGGATCAAAATAATTTTATGGTATCGCCAATTGTGATTATTCAAGTAACTAAATTTGAATGTGGTGGCCTAGCTTTATCATTCAGTGTTTCACACCCTGCAATGGATGGTTTCACAGGTTTGCAATT</genome_strand>
        <mrna_strand>CCAGCCTACACCCTCTCAGAATCAACGTTACAAGCTCTCTTTCTTTGATCAAATTGCTGAGAGAGAGCACATTCCTGTTGTTCTTTTCTATCCTTATAATAATATTAATAGCCACACTATCGATGAACGTCTTGAGAAATCCCTTTCTGATGTATTAACTCATGTTTATCCAGCAGCAGGAAGGTATGACGACAACGCTGAATGTTCGATTCTCTGTCTTGATCAAGGTGTTTCCTATACCAAAGCCAAGGTCAATTGTTAGCTTGGTAATTTCTTAGAGAAAACACGCAAGGATTTGAGTGTTGCTACTTTATTTGGGCCACATGAAAATAAGAACATGGATCAAAATAATTTTATGGTATCGCCAATTGTGATTATTCAAGTAACTAAATTTGAATGTGGTGGCCTAGCTATATCATTCAGTGTTTCACACCCTGCAATGGACGGTTTCACAGGTTTGCAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E244797" ref_strand="+" ref_description="SGN-E244797 	[cLED-38-P12]">
      <seq>gtacgcttggctatttattagagaaaacacgcaaggatttgagtgttgcaactttatttgggccacatgaaaataagaacatggatcaaaataattttatggtatcgccaattgtgattattcaagtaactaaatttgaatgtggtggcctagctttatcattcagtgtttcacaccctgcaatggatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="85831" stop="85043"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85531" g_stop="85343" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E244797" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>189</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85531" e_stop="85343"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAGCTTGGTAATTTCTTAGAGAAAACACGCAAGGATTTGAGTGTTGCAACTTTATTTGGGCCACATGAAAATAAGAACATGGATCAAAATAATTTTATGGTATCGCCAATTGTGATTATTCAAGTAACTAAATTTGAATGTGGTGGCCTAGCTTTATCATTCAGTGTTTCACACCCTGCAATGGATG</genome_strand>
        <mrna_strand>GTACGCTTGGCTATTTATTAGAGAAAACACGCAAGGATTTGAGTGTTGCAACTTTATTTGGGCCACATGAAAATAAGAACATGGATCAAAATAATTTTATGGTATCGCCAATTGTGATTATTCAAGTAACTAAATTTGAATGTGGTGGCCTAGCTTTATCATTCAGTGTTTCACACCCTGCAATGGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E240446" ref_strand="+" ref_description="SGN-E240446 	[cLED-21-C3]">
      <seq>ccagcctacaccttttcagaatcaacgttacaagctctctttctttgatcaaattgctgagagagagcacattcctgttgttcttttctatccttataataatattaatagccacactatcgatgaacgtcttgagaaatccctttctgatgtattaactcatgtttatccagcagcaggaaggtatgacgacaacgctgaatgttcgattctctgtcttgatcaaggtgtttcctataccaaagccaaggtcaattgtaagcttggtaatttcttagagaaaacacgcaaggatttgagtgttgcaactttatttgggccacatgaaaataagaacatggatcaaaataatttttatggtatcgccaattgtgattattcaagtaactaaatttgaatgtggtggcctagctttatcattcagtgtttcacaccctgcaatgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="86086" stop="85045"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85787" g_stop="85345" g_length="443"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="445" r_length="445" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E240446" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>443</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85787" e_stop="85345"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCA-CCTACACCCTCTCAGAATCAACGTTACAAGCTCTCTTTCTTTGATCAAATTGCTGAGAGAGAGCACATTCCTGTTGTTCTTTTCTATCCTTATAATAATATTAATAGCCACACTATCGATGAACGTCTTGAGAAATCCCTTTCTGATGTATTAACTCATGTTTATCCAGCAGCAGGAAGGTATGACGACAACGCTGAATGTTCGATTCTCTGTCTTGATCAAGGTGTTTCCTATACCAAAGCCAAGGTCAATTGTAAGCTTGGTAATTTCTTAGAGAAAACACGCAAGGATTTGAGTGTTGCAACTTTATTTGGGCCACATGAAAATAAGAACATGGATCAAAATAA-TTTTATGGTATCGCCAATTGTGATTATTCAAGTAACTAAATTTGAATGTGGTGGCCTAGCTTTATCATTCAGTGTTTCACACCCTGCAATGGA</genome_strand>
        <mrna_strand>CCAGCCTACACCTTTTCAGAATCAACGTTACAAGCTCTCTTTCTTTGATCAAATTGCTGAGAGAGAGCACATTCCTGTTGTTCTTTTCTATCCTTATAATAATATTAATAGCCACACTATCGATGAACGTCTTGAGAAATCCCTTTCTGATGTATTAACTCATGTTTATCCAGCAGCAGGAAGGTATGACGACAACGCTGAATGTTCGATTCTCTGTCTTGATCAAGGTGTTTCCTATACCAAAGCCAAGGTCAATTGTAAGCTTGGTAATTTCTTAGAGAAAACACGCAAGGATTTGAGTGTTGCAACTTTATTTGGGCCACATGAAAATAAGAACATGGATCAAAATAATTTTTATGGTATCGCCAATTGTGATTATTCAAGTAACTAAATTTGAATGTGGTGGCCTAGCTTTATCATTCAGTGTTTCACACCCTGCAATGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E242524" ref_strand="+" ref_description="SGN-E242524 	[cLED-30-M2]">
      <seq>ctacaccctctcagaatcaacgttacaagctctctttctttgatcaaattgctgagagagagcacattcctgttgttcttttctatccttataataatattaatagccacactatcgatgaacgtcttgagaaatccctttctgatgtattaactcatgtttatccagcagcaggaaggtatgacgacaacgctgaatgttcgattctctgtcttgatcaaggtgtttcctataccaaagccaaggtcaattgtaagcttggtaatttcttagagaaaacacgcaaggatttgagtgttgcaactttatttgggccacatgaaaataagaacatggatcaaaataattttatggtatcgccaattgtgattattcaagtaactaaatttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="86083" stop="85094"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="85783" g_stop="85394" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E242524" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E242524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="85783" e_stop="85394"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACACCCTCTCAGAATCAACGTTACAAGCTCTCTTTCTTTGATCAAATTGCTGAGAGAGAGCACATTCCTGTTGTTCTTTTCTATCCTTATAATAATATTAATAGCCACACTATCGATGAACGTCTTGAGAAATCCCTTTCTGATGTATTAACTCATGTTTATCCAGCAGCAGGAAGGTATGACGACAACGCTGAATGTTCGATTCTCTGTCTTGATCAAGGTGTTTCCTATACCAAAGCCAAGGTCAATTGTAAGCTTGGTAATTTCTTAGAGAAAACACGCAAGGATTTGAGTGTTGCAACTTTATTTGGGCCACATGAAAATAAGAACATGGATCAAAATAATTTTATGGTATCGCCAATTGTGATTATTCAAGTAACTAAATTTG</genome_strand>
        <mrna_strand>CTACACCCTCTCAGAATCAACGTTACAAGCTCTCTTTCTTTGATCAAATTGCTGAGAGAGAGCACATTCCTGTTGTTCTTTTCTATCCTTATAATAATATTAATAGCCACACTATCGATGAACGTCTTGAGAAATCCCTTTCTGATGTATTAACTCATGTTTATCCAGCAGCAGGAAGGTATGACGACAACGCTGAATGTTCGATTCTCTGTCTTGATCAAGGTGTTTCCTATACCAAAGCCAAGGTCAATTGTAAGCTTGGTAATTTCTTAGAGAAAACACGCAAGGATTTGAGTGTTGCAACTTTATTTGGGCCACATGAAAATAAGAACATGGATCAAAATAATTTTATGGTATCGCCAATTGTGATTATTCAAGTAACTAAATTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E258562" ref_strand="+" ref_description="SGN-E258562 	[cLEG-47-L19]">
      <seq>aaatatttccttcgataacaatcaaataagaaagagcttatatttttgttaattcaatcaattccaaaacaaagtgtcaagatgaatgagcccaatttaaattttaaattgtaaaaattttcaaacttattctacatccgcttcaccccgattagcgtataacgatggtcgatgagtgacaaccggaacagtggcattattgctggaatattcatcagctaggagaaaaaatgcaggctcttgtgtcagcaccaactagctgttacatcaattgcacaagaagaagaagatttatacacaataatcaatatgacacctccaaagattaccccttttcttcttcaccaactaaatcactttgtttttcaagcacccatttgccttttcaatcacaaaatcttgttctgtatcgaaaacccatttcattaatatccagaggacagcttctgtgttcaaattcgtcaactgccattactgctgatggtgatgacaacaagaataaaagctttggggattggatccaaagtgttggggaaacgatttctgttttgtttcccttgtgggtagctttgggttgcttgattgggctgcttaaacctagctcgtacaattgggtcaaacctcaatggactgtgatgggcattacactcactatgcttggtatgggaatgactcttactttcgatgaacttcgtggtgctttagcgatgcctaaagagctgttctgcggattcatccttcagtattcggtgatgcctttatcgggatattttgttagcaagctattaaatttgccatcccattatgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="95990" stop="98006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96290" g_stop="97038" g_length="749"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="749" r_length="749" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97039" i_stop="97646" i_length="608">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.440" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97647" g_stop="97706" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="750" r_stop="809" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E258562" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258562" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96290" e_stop="97038"/>
          <exon e_start="97647" e_stop="97706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATTTCCTTCGATAACAATCAAATAAGAAAGAGCTTATATTTTTGTTAATTCAATCAATTCCAAAACAAAGTGTCAAGATGAATGAGCCCAATTTAAATTTTAAATTGTAAAAATTTTCAAACTTATTCTACATCCGCTTCACCCCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCGGTATCTTTTCTCCTTACTCTCCATAGTAGCATGTTGATTTTCTTAGGGACATTGTTTATGAAATGACAATTGTTGAATGGAACACATATAGACTTAGATAATCCTCCCCATATGAGTTGACTTTTGATCTGCATTTGATGGGATGAGGTGGGATGAAAAGGGAATGAGTGATCTCCTTTACATATACTTAGTCAATGCACCCGAGATTGAGTTAGGCTCGAAATCCATTTCTTTACAACAACGAATATAGCGAGTAAAACAATATAAGGTTGAATTTCATATACAAATAATCCCTGCAATCTGGAATGAAAATATTCAATCATTTAGCTTTGACCAAGAAGTGACAATGAGTAAGGTAAGGATATATAGATGTCACATTATCTCACTGAAAGATTTGTCTTTTATGTATGCTGCTTATATTGAACAGTGGATGATTCATTTGCAGGGTATATTTGTAGCCTCCTGCATTTTAGACTTTTAATTGTGGCAGAACAGGAGGGATATTTTCTTTCTTTAATTTTTCATAAATGAGAAATCAGTTGTTTTCAGCTGTATGTCGTGCCCAATTCTTTGGCATAGATGAGTTAACAGGCTGTTTTCTGGTATAGGTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCA</genome_strand>
        <mrna_strand>AAATATTTCCTTCGATAACAATCAAATAAGAAAGAGCTTATATTTTTGTTAATTCAATCAATTCCAAAACAAAGTGTCAAGATGAATGAGCCCAATTTAAATTTTAAATTGTAAAAATTTTCAAACTTATTCTACATCCGCTTCACCCCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGAACTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E258594" ref_strand="+" ref_description="SGN-E258594 	[cLEG-47-J20]">
      <seq>aaatatttccttcgataacaatcaaataagaaagagcttatatttttgttaattcaatcaattccaaaacaaagtgtcaagatgaatgagcccaatttaaattttaaattgtaaaaattttcaaacttattctacatccgcttcaccccgattagcgtataacgatggtcgatgagtgacaaccnggaacagtggcattattggctggaatattcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="95990" stop="96804"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96290" g_stop="96504" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="217" r_length="217" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E258594" ref_strand="+">
        <total_alignment_score>0.981</total_alignment_score>
        <cumulative_length_of_scored_exons>215</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258594" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96290" e_stop="96504"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATTTCCTTCGATAACAATCAAATAAGAAAGAGCTTATATTTTTGTTAATTCAATCAATTCCAAAACAAAGTGTCAAGATGAATGAGCCCAATTTAAATTTTAAATTGTAAAAATTTTCAAACTTATTCTACATCCGCTTCACCCCGATTAGCGTATAACGATGGTCGATGAGTGACAACC-GGAACAGTGGCATTATT-GCTGGAATATTCAT</genome_strand>
        <mrna_strand>AAATATTTCCTTCGATAACAATCAAATAAGAAAGAGCTTATATTTTTGTTAATTCAATCAATTCCAAAACAAAGTGTCAAGATGAATGAGCCCAATTTAAATTTTAAATTGTAAAAATTTTCAAACTTATTCTACATCCGCTTCACCCCGATTAGCGTATAACGATGGTCGATGAGTGACAACCNGGAACAGTGGCATTATTGGCTGGAATATTCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E315985" ref_strand="+" ref_description="SGN-E315985 	[cTOA-23-E13]">
      <seq>aatgagcccaatttaaattttaaattgtaaaaattttcaaacttattctacatccgcttcaccccgattagcgtataacgatggtcgatgagtgacaaccggaacagtggcattattgctggaatattcatcagctaggagaaaaaatgcaggctcttgtgtcagcaccaactagctgttacatcaattgcacaagaagaagaagatttatacacaataatcaatatgacacctccaaagattaccccttttcttcttcaccaactaaatcactttgtttttcaagcacccatttgccttttcaatcacaaaatcttgttctgtatcgaaaacccatttcattaatatccagaggacagcttctgtgttcaaattcgtcaactgccattactgctgatggtgatgacaacaagaataaaagctttggggattggatccaaagtgttggggaaacgatttctgttttgtttcccttgtgggtagctttgggttgcttgattgggctgcttaaacctagctcgtacaattgggtcaaacctcaatggactgtgatgggcattacactcactatgcttggtatgggaatgactcttactttcgatgacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="96074" stop="97280"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96374" g_stop="96980" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="607" r_length="607" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E315985" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96374" e_stop="96980"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGAGCCCAATTTAAATTTTAAATTGTAAAAATTTTCAAACTTATTCTACATCCGCTTCACCCCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCT</genome_strand>
        <mrna_strand>AATGAGCCCAATTTAAATTTTAAATTGTAAAAATTTTCAAACTTATTCTACATCCGCTTCACCCCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E325144" ref_strand="+" ref_description="SGN-E325144 	[cTOC-13-J1]">
      <seq>ccgattagcgtataacgatggtcgatgagtgacaaccggaacagtggcattattgctggaatattcatcagctaggagaaaaaatgcaggctcttgtgtcagcaccaactagctgttacatcaattgcacaagaagaagaagatttatacacaataatcaatatgacacctccaaagattaccccttttcttcttcaccaactaaatcactttgtttttcaagcacccatttgccttttcaatcacaaaatcttgttctgtatcgaaaacccatttcattaatatccagaggacagcttctgtgttcaaattcgtcaactgccattactgctgatggtgatgacaacaagaataaaagctttggggattggatccaaagtgttggggaaacgatttctgttttgtttcccttgtgggtagctttgggttgcttgattgggctgcttaaacctagctcgtacaattgggtcaaacctcaatggactgtgatgggcattacactcactatgcttggtatgggaatgactcttactttcgatgaccttcgtggtgctttagcgatgcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="96137" stop="97302"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96437" g_stop="97002" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E325144" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>566</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E325144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96437" e_stop="97002"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCT</genome_strand>
        <mrna_strand>CCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E342843" ref_strand="+" ref_description="SGN-E342843 	[cTOF-7-F8]">
      <seq>ccgattagcgtataacgatggtcgatgagtgacaaccggaacagtggcattattgctggaatattcatcagctaggagaaaaaatgcaggctcttgtgtcagcaccaactagctgttacatcaattgcacaagaagaagaagatttatacacaataatcaatatgacacctccaaagattaccccttttcttcttcaccaactaaatcactttgtttttcaagcacccatttgccttttcaatcacaaaatcttgttctgtatcgaaaacccatttcattaatatccagaggacagcttctgtgttcaaattcgtcaactgccattactgctgatggtgatgacaacaagaataaaagctttggggattggatccaaagtgttggggaaacgatttctgttttgtttcccttgtgggtagctttgggttgcttgattgggctgcttaaacctagctcgtacaattgggtcaaacctcaatggactgtgatgggcattacactcactatgcttggtatgggaatgactcttactttcgatgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="96137" stop="97278"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96437" g_stop="96978" g_length="542"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="542" r_length="542" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E342843" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342843" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96437" e_stop="96978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGAC</genome_strand>
        <mrna_strand>CCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E203575" ref_strand="+" ref_description="SGN-E203575 	[cLEC-15-C5]">
      <seq>ccgattagcgtataacgatggtcgatgagtgacaaccggaacagtggcattattgctggaatattcatcagctaggagaaaaaatgcaggctcttgtgtcagcaccaactagctgttacatcaattgcacaagaagaagaagatttatacacaataatcaatatgacacctccaaagattaccccttttcttcttcaccaactaaatcactttgtttttcaagcacccatttgccttttcaatcacaaaatcttgttctgtatcgaaaacccatttcattaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="96137" stop="97020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96437" g_stop="96720" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="284" r_length="284" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E203575" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E203575" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96437" e_stop="96720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATA</genome_strand>
        <mrna_strand>CCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E207332" ref_strand="+" ref_description="SGN-E207332 	[cLEC-30-N10]">
      <seq>aataatcaatatgacacctccaaagattaccccttttcttcttcaccaactaaatcactttgtttttcaagcacccatttgccttttcaatcacaaaatcttgttctgtatcgaaaacccatttcattaatatccagaggacagcttctgtgttcaaattcgtcaactgccattactgctgatggtgatgacaacaagaataaaagctttggggattggatccaaagtgttggggaaacgatttctgttttgtttcccttgtgggtagctttgggttgcttgattgggctgcttaaacctagctcgtacaattgggtcaaacctcaatggactgtgatgggcattacactcactatgcttggtatgggaatgactcttactttcgatgaccttcgtggtgctttagcgatgcctaaagagctgttctgcggattcatccttcagtattcggtgatgcctttatcgggatattttgttagcccaaaaaaaggggggctattaaatttgccatcccattatgcagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="96289" stop="98009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96589" g_stop="97038" g_length="450"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="450" r_length="450" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97039" i_stop="97646" i_length="608">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.440" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97647" g_stop="97674" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="478" r_length="28" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E207332" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207332" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96589" e_stop="97038"/>
          <exon e_start="97647" e_stop="97674"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCGGTATCTTTTCTCCTTACTCTCCATAGTAGCATGTTGATTTTCTTAGGGACATTGTTTATGAAATGACAATTGTTGAATGGAACACATATAGACTTAGATAATCCTCCCCATATGAGTTGACTTTTGATCTGCATTTGATGGGATGAGGTGGGATGAAAAGGGAATGAGTGATCTCCTTTACATATACTTAGTCAATGCACCCGAGATTGAGTTAGGCTCGAAATCCATTTCTTTACAACAACGAATATAGCGAGTAAAACAATATAAGGTTGAATTTCATATACAAATAATCCCTGCAATCTGGAATGAAAATATTCAATCATTTAGCTTTGACCAAGAAGTGACAATGAGTAAGGTAAGGATATATAGATGTCACATTATCTCACTGAAAGATTTGTCTTTTATGTATGCTGCTTATATTGAACAGTGGATGATTCATTTGCAGGGTATATTTGTAGCCTCCTGCATTTTAGACTTTTAATTGTGGCAGAACAGGAGGGATATTTTCTTTCTTTAATTTTTCATAAATGAGAAATCAGTTGTTTTCAGCTGTATGTCGTGCCCAATTCTTTGGCATAGATGAGTTAACAGGCTGTTTTCTGGTATAGGTGATGCCTTTATCGGGATATTTTGTTA</genome_strand>
        <mrna_strand>AATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCCTTTATCGGGATATTTTGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E286772" ref_strand="+" ref_description="SGN-E286772 	[cLES-14-L10]">
      <seq>atcacaaaatcttgttctgtatcgaaaacccatttcattaatatccagaggacagcttctgtgttcaaattcgtcaactgccattactgctgatggtgatgacaacaagaataaaagctttggggattggatccaaagtgttggggaaacgatttctgttttgtttcccttgtgggtagctttgggttgcttgattgggctgcttaaacctagctcgtacaattgggtcaaacctcaatggactgtgatgggcattacactcactatgcttggtatgggaatgactcttactttcgatgaccttcgtggtgctttagcgatgcctaaagagctgttctgcggattcatccttcagtattcggtgatgcctttatcgggatattttgttagcaagctattaaatttgccatcccattatgcagcaggcttgatattggttggctgctgtcctggagggacggcaagtaacattgtcacttacattgcacgtggaaatgtggcgctttcagttttgatgactgctgcaagtaccctatctgccgtggtgatgaccccttttctaacagagaaacttgcagggcaatttgttgcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="96378" stop="99148"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96678" g_stop="97038" g_length="361"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="361" r_length="361" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97039" i_stop="97646" i_length="608">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.440" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97647" g_stop="97740" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="455" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97741" i_stop="97818" i_length="78">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97819" g_stop="97852" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="489" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="97853" i_stop="97951" i_length="99">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="97952" g_stop="98006" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="490" r_stop="544" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98007" i_stop="98798" i_length="792">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98799" g_stop="98848" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="594" r_length="50" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E286772" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96678" e_stop="97038"/>
          <exon e_start="97647" e_stop="97740"/>
          <exon e_start="97819" e_stop="97852"/>
          <exon e_start="97952" e_stop="98006"/>
          <exon e_start="98799" e_stop="98848"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCGGTATCTTTTCTCCTTACTCTCCATAGTAGCATGTTGATTTTCTTAGGGACATTGTTTATGAAATGACAATTGTTGAATGGAACACATATAGACTTAGATAATCCTCCCCATATGAGTTGACTTTTGATCTGCATTTGATGGGATGAGGTGGGATGAAAAGGGAATGAGTGATCTCCTTTACATATACTTAGTCAATGCACCCGAGATTGAGTTAGGCTCGAAATCCATTTCTTTACAACAACGAATATAGCGAGTAAAACAATATAAGGTTGAATTTCATATACAAATAATCCCTGCAATCTGGAATGAAAATATTCAATCATTTAGCTTTGACCAAGAAGTGACAATGAGTAAGGTAAGGATATATAGATGTCACATTATCTCACTGAAAGATTTGTCTTTTATGTATGCTGCTTATATTGAACAGTGGATGATTCATTTGCAGGGTATATTTGTAGCCTCCTGCATTTTAGACTTTTAATTGTGGCAGAACAGGAGGGATATTTTCTTTCTTTAATTTTTCATAAATGAGAAATCAGTTGTTTTCAGCTGTATGTCGTGCCCAATTCTTTGGCATAGATGAGTTAACAGGCTGTTTTCTGGTATAGGTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAGGTATGCTCAGCTAAAAACTCCTTTCCAGGCCTTCTACTTAATAGGCATTCACTAAGCATTTCATGCATTACTCTGCAGGGACGGCAAGTAACATTGTCACTTACATTGCACGGTAGGTTGACGTTATGAAGATCCTTTAATATCATCATTATTCAATATTATCATTTTCATTATAATACCTACTAGGCGTTGATACTTCATTTTGTTGCAGTGGAAATGTGGCGCTTTCAGTTTTGATGACTGCTGCAAGTACCCTATCTGCCGTGGTTGGTTGCTTTTATTTCATTATTTGGTTGACGGATATCTTATCCAATATAAGACTGTGCATAGTGTGTCGTGTGTTTTATGCATCCTGAGAACAATTGACCTAAAACAGTTTGTTCCTAAAAGAAACTTTCACGAAATAGTTTTTACTCTAAACTCTCTTTCTTACGCGAGACAGAAAGTGTAACTACCGAAGCTCTTTCAACTTGTCCTGTCTTTGGATAAGTATTGCGGTTAAGTCAGTTAACAAGATGAGAGTCGGAAAATTGAAATAAGAACTCTTGAGATGAAAGCTTCTGGACAACAAATAAATTTATTGTTGACAGAATAATTAAAACAAACTTGGGGAGCTTCTTTCTTCAAGTTACTTTGAGTTTAGGAATCATCTCGATTTTCAAAAGCATGTAAGCATTGGGAGGAGTTGGTCTATTTTCCCTAAGAGCAATGCAAGCACAATAAGAATATCAAAGCAGTCAATTGTTGTAATAGTCAGAGACAAAGATAAATCGTCAAGGTGTACACCAGATATAGACGGGATGAATTTGAAATATGTGTAGTGAAGGGCCTGAAGGCTTCAGTGCTAGTTACAATCATTTAAAAAATTTAATAAAACCCTACCATCAGAATAGTTGTGCAAACAGGTCCTACTAATTTACCTCCAGACAGCAATCAACTTATTTATTGTTGATTGAATGTATCACATGCCTCCCTTAATATCATTGGAGATACTGTCGTCATATTTGATGGTGTGAGAGCTTCCTTAAGTTGATTGGCCTTTCCTGTTATCCATGCAGGTGATGACCCCTTTTCTAACAGAGAAACTTGCAGGGCAATTTGTTGCAGT</genome_strand>
        <mrna_strand>ATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAG..............................................................................GGACGGCAAGTAACATTGTCACTTACATTGCACG...................................................................................................TGGAAATGTGGCGCTTTCAGTTTTGATGACTGCTGCAAGTACCCTATCTGCCGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGACCCCTTTTCTAACAGAGAAACTTGCAGGGCAATTTGTTGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E201765" ref_strand="+" ref_description="SGN-E201765 	[cLEC-11-M20]">
      <seq>ccatttcattaatatccagaggacagcttctgtgttcaaattcgtcaactgccattactgctgatggtgatgacaacaagaataaaagctttggggattggatccaaagtgttggggaaacgatttctgttttgtttcccttgtgggtagctttgggttgcttgattgggctgcttaaacctagctcgtacaattgggtcaaacctcaatggactgtgatgggcattacactcactatgcttggtatgggaatgactcttactttcgatgaccttcgtggtgctttagcgatgcctaaagagctgttctgcggattcatccttcagtattcggtgatgcctttatcgggatattttgttagcaagctattaaatttgccatcccattatgcagcaggcttgatattggttggctgctgtcctggagggacggcaagtaacattgtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="96407" stop="98138"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="96707" g_stop="97038" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="332" r_length="332" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97039" i_stop="97646" i_length="608">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.440" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97647" g_stop="97740" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="426" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97741" i_stop="97818" i_length="78">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97819" g_stop="97838" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="427" r_stop="446" r_length="20" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E201765" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>446</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E201765" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="96707" e_stop="97038"/>
          <exon e_start="97647" e_stop="97740"/>
          <exon e_start="97819" e_stop="97838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCGGTATCTTTTCTCCTTACTCTCCATAGTAGCATGTTGATTTTCTTAGGGACATTGTTTATGAAATGACAATTGTTGAATGGAACACATATAGACTTAGATAATCCTCCCCATATGAGTTGACTTTTGATCTGCATTTGATGGGATGAGGTGGGATGAAAAGGGAATGAGTGATCTCCTTTACATATACTTAGTCAATGCACCCGAGATTGAGTTAGGCTCGAAATCCATTTCTTTACAACAACGAATATAGCGAGTAAAACAATATAAGGTTGAATTTCATATACAAATAATCCCTGCAATCTGGAATGAAAATATTCAATCATTTAGCTTTGACCAAGAAGTGACAATGAGTAAGGTAAGGATATATAGATGTCACATTATCTCACTGAAAGATTTGTCTTTTATGTATGCTGCTTATATTGAACAGTGGATGATTCATTTGCAGGGTATATTTGTAGCCTCCTGCATTTTAGACTTTTAATTGTGGCAGAACAGGAGGGATATTTTCTTTCTTTAATTTTTCATAAATGAGAAATCAGTTGTTTTCAGCTGTATGTCGTGCCCAATTCTTTGGCATAGATGAGTTAACAGGCTGTTTTCTGGTATAGGTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAGGTATGCTCAGCTAAAAACTCCTTTCCAGGCCTTCTACTTAATAGGCATTCACTAAGCATTTCATGCATTACTCTGCAGGGACGGCAAGTAACATTGTC</genome_strand>
        <mrna_strand>CCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAG..............................................................................GGACGGCAAGTAACATTGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E206802" ref_strand="+" ref_description="SGN-E206802 	[cLEC-33-A21]">
      <seq>ttcagtattcggtgatgcctttatcgggatattttgttagcaagctattaaatttgccatcccattatgcagcaggcttgatattggttggctgctgtcctggagggacggcaagtaacattgtcacttacattgcacgtggaaatgtggcgctttcagttttgatgactgctgcaagtaccctatctgccgtggtgatgaccccttttctaacagagaaacttgcagggcaatttgttgcagtagatgcagctggacttttcatgtctactttacaggtggtgcttcttcctgtattagctggtgcatttctgaatcagtatttcaaaggcctagtcaaaatcgtgtctccattgatgccacctattgctgtagcaactgttgctgttctttgtggaaatgcaattgcacagagttcttctgcaatccttatgtcaggacaacaggttgtcatagctgctgctcttcttcatgcgtctggcttcttctttggctatgtactcgcaaggatgcttggagttgatatgtcctactcaaggacaatatctattgaagtcggaatgcaaaactcggttcttggagtagttctagccactcagcactttggtaatacacttactgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="97341" stop="99714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97636" g_stop="97740" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="97741" i_stop="97818" i_length="78">
            <donor d_prob="0.966" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="97819" g_stop="97852" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="139" r_length="34" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="97853" i_stop="97951" i_length="99">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="97952" g_stop="98006" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="140" r_stop="194" r_length="55" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="98007" i_stop="98798" i_length="792">
            <donor d_prob="0.942" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="98799" g_stop="98882" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="278" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="98883" i_stop="98963" i_length="81">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.915" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="98964" g_stop="99251" g_length="288"/>
          <reference_exon_boundary r_type="cDNA" r_start="279" r_stop="566" r_length="288" r_score="0.993"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="99252" i_stop="99357" i_length="106">
            <donor d_prob="1.000" d_score="0.96"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="99358" g_stop="99414" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="623" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E206802" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97636" e_stop="97740"/>
          <exon e_start="97819" e_stop="97852"/>
          <exon e_start="97952" e_stop="98006"/>
          <exon e_start="98799" e_stop="98882"/>
          <exon e_start="98964" e_stop="99251"/>
          <exon e_start="99358" e_stop="99414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGGTATAGGTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAGGTATGCTCAGCTAAAAACTCCTTTCCAGGCCTTCTACTTAATAGGCATTCACTAAGCATTTCATGCATTACTCTGCAGGGACGGCAAGTAACATTGTCACTTACATTGCACGGTAGGTTGACGTTATGAAGATCCTTTAATATCATCATTATTCAATATTATCATTTTCATTATAATACCTACTAGGCGTTGATACTTCATTTTGTTGCAGTGGAAATGTGGCGCTTTCAGTTTTGATGACTGCTGCAAGTACCCTATCTGCCGTGGTTGGTTGCTTTTATTTCATTATTTGGTTGACGGATATCTTATCCAATATAAGACTGTGCATAGTGTGTCGTGTGTTTTATGCATCCTGAGAACAATTGACCTAAAACAGTTTGTTCCTAAAAGAAACTTTCACGAAATAGTTTTTACTCTAAACTCTCTTTCTTACGCGAGACAGAAAGTGTAACTACCGAAGCTCTTTCAACTTGTCCTGTCTTTGGATAAGTATTGCGGTTAAGTCAGTTAACAAGATGAGAGTCGGAAAATTGAAATAAGAACTCTTGAGATGAAAGCTTCTGGACAACAAATAAATTTATTGTTGACAGAATAATTAAAACAAACTTGGGGAGCTTCTTTCTTCAAGTTACTTTGAGTTTAGGAATCATCTCGATTTTCAAAAGCATGTAAGCATTGGGAGGAGTTGGTCTATTTTCCCTAAGAGCAATGCAAGCACAATAAGAATATCAAAGCAGTCAATTGTTGTAATAGTCAGAGACAAAGATAAATCGTCAAGGTGTACACCAGATATAGACGGGATGAATTTGAAATATGTGTAGTGAAGGGCCTGAAGGCTTCAGTGCTAGTTACAATCATTTAAAAAATTTAATAAAACCCTACCATCAGAATAGTTGTGCAAACAGGTCCTACTAATTTACCTCCAGACAGCAATCAACTTATTTATTGTTGATTGAATGTATCACATGCCTCCCTTAATATCATTGGAGATACTGTCGTCATATTTGATGGTGTGAGAGCTTCCTTAAGTTGATTGGCCTTTCCTGTTATCCATGCAGGTGATGACCCCTTTTCTAACAGAGAAACTTGCAGGGCAATTTGTTGCAGTAGATGCAGCTGGACTTTTCATGTCTACTTTACAGGTCCATTTCTTCATCTGATTATTGGCTCATCAGTATTGTATACCTTGTCATAATAAACAATAAACCCTGCCAAAATATCAGGTGGTGCTTCTTCCTGTATTAGCTGGTGCATTTCTGAATCAGTATTTCAAAGGCCTAGTCAAAATCGTGTCTCCATTGATGCCACCTATTGCTGTAGCAACTGTTGCTGTTCTTTGTGGAAATGCAATTGCACAGAGTTCTTCTGCAATCCTTATGTCAGGACAACAGGTTGTCATAGCTGCTGCTCTTCTTCATGCGTCTGGCTTCTTCTTTGGCTATGTACTCGCAAGGATGCTTGGAGTTGATATGTCCTCCTCAAGGACAATATCTATTGAAGTCGGAATGCAGGTAAGAAAATATTTGTTTACTTCCGATCCTCATTATATAACTGAAAAAAATCTTCATAAATGGCAAAGATAACACTTGATATATCATGACTTTGTTTGTTTTGCAGAACTCGGTTCTTGGAGTAGTTCTAGCCACTCAGCACTTTGGTAATCCACTTACTGCA</genome_strand>
        <mrna_strand>TTCAGTATTCGGTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAG..............................................................................GGACGGCAAGTAACATTGTCACTTACATTGCACG...................................................................................................TGGAAATGTGGCGCTTTCAGTTTTGATGACTGCTGCAAGTACCCTATCTGCCGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGACCCCTTTTCTAACAGAGAAACTTGCAGGGCAATTTGTTGCAGTAGATGCAGCTGGACTTTTCATGTCTACTTTACAG.................................................................................GTGGTGCTTCTTCCTGTATTAGCTGGTGCATTTCTGAATCAGTATTTCAAAGGCCTAGTCAAAATCGTGTCTCCATTGATGCCACCTATTGCTGTAGCAACTGTTGCTGTTCTTTGTGGAAATGCAATTGCACAGAGTTCTTCTGCAATCCTTATGTCAGGACAACAGGTTGTCATAGCTGCTGCTCTTCTTCATGCGTCTGGCTTCTTCTTTGGCTATGTACTCGCAAGGATGCTTGGAGTTGATATGTCCTACTCAAGGACAATATCTATTGAAGTCGGAATGCAA..........................................................................................................AACTCGGTTCTTGGAGTAGTTCTAGCCACTCAGCACTTTGGTAATACACTTACTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E282543" ref_strand="-" ref_description="SGN-E282543 	[cLER-18-J1]">
      <seq>aactcggttcttggagtagttctagccactcagcactttggtaatccacttactgcagtaccatgtgccgtttctagtgtttgccattcgatatttggcagtgccttggctggcatatggaggcgttctattccagataaagtgcaggactaagtcactctgttggcaattctatgatggtctgaatataagattgtagtttttcgcagtgatcatcaagcttggtagtcagtgaattcggagatctttttatttttttgggaagttcatagtgatgtctggcgaatcagcattaatctgtctgtagtaaaaccaattttactttgttggtggtggcggtagtaaaacctataaacatcttgatcattggcaggaatttatctgcatctgatatctaattcttgttcggtaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="99058" stop="100068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99358" g_stop="99767" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="410" r_length="410" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="411" polyA_stop="429"/>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E282543" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>410</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282543" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="99358" e_stop="99767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACTCGGTTCTTGGAGTAGTTCTAGCCACTCAGCACTTTGGTAATCCACTTACTGCAGTACCATGTGCCGTTTCTAGTGTTTGCCATTCGATATTTGGCAGTGCCTTGGCTGGCATATGGAGGCGTTCTATTCCAGATAAAGTGCAGGACTAAGTCACTCTGTTGGCAATTCTATGATGGTCTGAATATAAGATTGTAGTTTTTCGCAGTGATCATCAAGCTTGGTAGTCAGTGAATTCGGAGATCTTTTTATTTTTTTGGGAAGTTCATAGTGATGTCTGGCGAATCAGCATTAATCTGTCTGTAGTAAAACCAATTTTACTTTGTTGGTGGTGGCGGTAGTAAAACCTATAAACATCTTGATCATTGGCAGGAATTTATCTGCATCTGATATCTAATTCTTGTTCTGT</genome_strand>
        <mrna_strand>AACTCGGTTCTTGGAGTAGTTCTAGCCACTCAGCACTTTGGTAATCCACTTACTGCAGTACCATGTGCCGTTTCTAGTGTTTGCCATTCGATATTTGGCAGTGCCTTGGCTGGCATATGGAGGCGTTCTATTCCAGATAAAGTGCAGGACTAAGTCACTCTGTTGGCAATTCTATGATGGTCTGAATATAAGATTGTAGTTTTTCGCAGTGATCATCAAGCTTGGTAGTCAGTGAATTCGGAGATCTTTTTATTTTTTTGGGAAGTTCATAGTGATGTCTGGCGAATCAGCATTAATCTGTCTGTAGTAAAACCAATTTTACTTTGTTGGTGGTGGCGGTAGTAAAACCTATAAACATCTTGATCATTGGCAGGAATTTATCTGCATCTGATATCTAATTCTTGTTCGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E539481" ref_strand="-" ref_description="SGN-E539481 	[TUS-59-E5]">
      <seq>tcatcaagcttggtagtcagtgaattcggagatctttttatttttttgggaagttcatagtgatgtctggcgaatcagcattaatctgtctgtagtaaaaccaattttactttgttggtggtggcggtagtaaaacctataaacatcttgatcattggcaggaatttatctgcatctgatatctaattcttgttctgtaaaaaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="99270" stop="100068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="99570" g_stop="99767" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="199" polyA_stop="218"/>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E539481" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>198</cumulative_length_of_scored_exons>
        <coverage percentage="0.908" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539481" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="99570" e_stop="99767"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCATCAAGCTTGGTAGTCAGTGAATTCGGAGATCTTTTTATTTTTTTGGGAAGTTCATAGTGATGTCTGGCGAATCAGCATTAATCTGTCTGTAGTAAAACCAATTTTACTTTGTTGGTGGTGGCGGTAGTAAAACCTATAAACATCTTGATCATTGGCAGGAATTTATCTGCATCTGATATCTAATTCTTGTTCTGT</genome_strand>
        <mrna_strand>TCATCAAGCTTGGTAGTCAGTGAATTCGGAGATCTTTTTATTTTTTTGGGAAGTTCATAGTGATGTCTGGCGAATCAGCATTAATCTGTCTGTAGTAAAACCAATTTTACTTTGTTGGTGGTGGCGGTAGTAAAACCTATAAACATCTTGATCATTGGCAGGAATTTATCTGCATCTGATATCTAATTCTTGTTCTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E330609" ref_strand="+" ref_description="SGN-E330609 	[cTOD-8-H21]">
      <seq>ttttttttatctccatatcccaaatccataaaagaaaaaaactagcacaaaaaaaaaattaatggctagtcatcatgaacttgaactatcaaataattatagtgatcgaagtgacgatgacatggacgaggacgaggatgagcaagataacatagaagaggaggaaaaagaagatgataattcaaatgactaccaacatttgtagtagtcgtagtcgaggaggaggattgacagacttcttttcttggaaagtcatagaccctagagcgccttgggttcaagaatggaatcgagtatttttattagtatgtgccacggggctatttgtggatcctctctttttctactctctctctatcaacgagacttgcatgtgcctttttatcgatggttggttcgcggtaacggtcaccgttcttcgatgcatgaccgatgcgatgcatttatggaacatgtggatacgattcaagatgcataaattacgtccttacaatgaaaaaatggatgaaaatcaaattactagtagtagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="104026" stop="105156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104326" g_stop="104856" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E330609" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330609" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104326" e_stop="104856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTATCTCCATATCCCAAATCCATAAAAGAAAAAAACTAGCACAAAAAAAAAAATTAATGGCTAGTCATCATGAACTTGAACTATCAAATAATTATAGTGATCGAAGTGACGATGACATGGACGAGGACGAGGATGAGCAAGATAACATAGAAGAGGAGGAAAAAGAAGATGATAATTCAAATGACTA-CAACATTTGTAGTAGTCGTAGTCGAGGAGGAGGATTGACAGACTTCTTTTCGTGGAAAGTCATAGACCCTAGAGCGCCTTGGGTTCAAGAATGGAATCGAGTATTTTTATTAGTATGTGCCACGGGGCTATTTGTGGATCCTCTCTTTTTCTACTCTCTCTCTATCAGCGAGACTTGCATGTGCCTTTTTATCGATGGTTGGTTTGCGGTAACGGTCACCGTTCTTCGATGCATGACCGATGCGATGCATTTATGGAACATGTGGATACGATTCAAGATGCATAAATTACGTCCTTACAATGAAAAAATGGATGAAAATCAAATTACTAGTAGTAGTC</genome_strand>
        <mrna_strand>TTTTTTTTATCTCCATATCCCAAATCCATAAAAGAAAAAAACTAGCAC-AAAAAAAAAATTAATGGCTAGTCATCATGAACTTGAACTATCAAATAATTATAGTGATCGAAGTGACGATGACATGGACGAGGACGAGGATGAGCAAGATAACATAGAAGAGGAGGAAAAAGAAGATGATAATTCAAATGACTACCAACATTTGTAGTAGTCGTAGTCGAGGAGGAGGATTGACAGACTTCTTTTCTTGGAAAGTCATAGACCCTAGAGCGCCTTGGGTTCAAGAATGGAATCGAGTATTTTTATTAGTATGTGCCACGGGGCTATTTGTGGATCCTCTCTTTTTCTACTCTCTCTCTATCAACGAGACTTGCATGTGCCTTTTTATCGATGGTTGGTTCGCGGTAACGGTCACCGTTCTTCGATGCATGACCGATGCGATGCATTTATGGAACATGTGGATACGATTCAAGATGCATAAATTACGTCCTTACAATGAAAAAATGGATGAAAATCAAATTACTAGTAGTAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E348509" ref_strand="+" ref_description="SGN-E348509 	[cTOF-30-D19]">
      <seq>ttttttttatctccatatcccaaatccataaaagaaaaaaactagcacaaaaaaaaaattaatggctagtcatcatgaacttgaactatcaaataattatagtgatcgaagtgacgatgacatggacgaggacgaggatgagcaagataacatagaagaggaggaaaaagaagatgataattcaaatgactacaacatttgtagtagtcgtagtcgaggaggaggattgacagacttctttttcttggaaagtcatagaccctagagcgccttgggttcaagaatggaatcgagtatttttattagtatgtgccacggggctatttgtggatcctctctttttctactctctctctatcagagagacttgcatgtgcctttttatcgatggttggttcgcggtaacggtcaccgttcttcgatgcatgaccgatgcgatgcatttatggaacatgtggatacgattcaagatgcataaattacgtccttacaatgaaaaaatggatgaaaatcaaattactagtagtagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="104026" stop="105156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104326" g_stop="104856" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="531" r_length="531" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E348509" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104326" e_stop="104856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTTTATCTCCATATCCCAAATCCATAAAAGAAAAAAACTAGCACAAAAAAAAAAATTAATGGCTAGTCATCATGAACTTGAACTATCAAATAATTATAGTGATCGAAGTGACGATGACATGGACGAGGACGAGGATGAGCAAGATAACATAGAAGAGGAGGAAAAAGAAGATGATAATTCAAATGACTACAACATTTGTAGTAGTCGTAGTCGAGGAGGAGGATTGACAGACTTC-TTTTCGTGGAAAGTCATAGACCCTAGAGCGCCTTGGGTTCAAGAATGGAATCGAGTATTTTTATTAGTATGTGCCACGGGGCTATTTGTGGATCCTCTCTTTTTCTACTCTCTCTCTATCAGCGAGACTTGCATGTGCCTTTTTATCGATGGTTGGTTTGCGGTAACGGTCACCGTTCTTCGATGCATGACCGATGCGATGCATTTATGGAACATGTGGATACGATTCAAGATGCATAAATTACGTCCTTACAATGAAAAAATGGATGAAAATCAAATTACTAGTAGTAGTC</genome_strand>
        <mrna_strand>TTTTTTTTATCTCCATATCCCAAATCCATAAAAGAAAAAAACTAGCAC-AAAAAAAAAATTAATGGCTAGTCATCATGAACTTGAACTATCAAATAATTATAGTGATCGAAGTGACGATGACATGGACGAGGACGAGGATGAGCAAGATAACATAGAAGAGGAGGAAAAAGAAGATGATAATTCAAATGACTACAACATTTGTAGTAGTCGTAGTCGAGGAGGAGGATTGACAGACTTCTTTTTCTTGGAAAGTCATAGACCCTAGAGCGCCTTGGGTTCAAGAATGGAATCGAGTATTTTTATTAGTATGTGCCACGGGGCTATTTGTGGATCCTCTCTTTTTCTACTCTCTCTCTATCAGAGAGACTTGCATGTGCCTTTTTATCGATGGTTGGTTCGCGGTAACGGTCACCGTTCTTCGATGCATGACCGATGCGATGCATTTATGGAACATGTGGATACGATTCAAGATGCATAAATTACGTCCTTACAATGAAAAAATGGATGAAAATCAAATTACTAGTAGTAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E311544" ref_strand="+" ref_description="SGN-E311544 	[cTOA-6-M9]">
      <seq>taagacgcatgcagaatctctctggatacatttttggtactgtttggtggggaattgctcttaacttgattgcttattttgttgcctcccatgcagtgggagcatgttggtacttgctaggaatccaaagggcagcaaaatgtttgaaacaacagtgtagagttacaaatggttgtagcctaagaatgttggcatgtgaagagaaaatattttatggaacaagtagtttggtgaagcatagaagtagagtcatatggggtgagtccaaaattgcaagatcaacatgtctagcctctgaacacaattttgattatggagtttataaatggactgttcaacttgtcacaaatgagaatcgttttgagaaaatattatttcccatcttctggggtctcatgactctcagtacatttggaaacttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="106404" stop="107798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="106704" g_stop="106795" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="106796" i_stop="107173" i_length="378">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="107174" g_stop="107487" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="406" r_length="314" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="107488" i_stop="107647" i_length="160">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="107648" g_stop="107663" g_length="16"/>
          <reference_exon_boundary r_type="cDNA" r_start="407" r_stop="422" r_length="16" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E311544" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>422</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311544" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="106704" e_stop="106795"/>
          <exon e_start="107174" e_stop="107487"/>
          <exon e_start="107648" e_stop="107663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGACGCATGCAGAATCTCTCTGGATACATTTTTGGTACTGTTTGGTGGGGAATTGCTCTTAACTTGATTGCTTATTTTGTTGCCTCCCATGTAAGTACACTACTTTTTCGTTCATCTTTATTTGTTCAGTATATTATTTTTACTTGTCATTTTTAACAAGAAAAAACTTGTTTTTATTACATGTCATTTGTTCTGTTTTATATTTATGCCTTTCAATTTTGGGTAGACATTTAAATTTGTAAAAAGTTGAATGAGTAGATACACATAGATTCCCTACATGACAATTTGTATGAGACGTCATGTGTTTAGTACTTGTTCAACTTTATACAAGTTTTAAGTGAGTAATATCGTTCATATCAAAAGTTAAAGAACAGACATAAATATTAATTAACGTTAAGTTAAAAGACACGTTTTTGTGTTATACCGAGTTGTTACACTCTAAAATTATGAGCATATATATGTATACAGGCAGTGGGAGCATGTTGGTACTTGCTAGGAATCCAAAGGGCAGCAAAATGTTTGAAACAACAGTGTAGAGTTACAAATGGTTGTAGCCTAAGAATGTTGGCATGTGAAGAGAAAATATTTTATGGAACAAGTAGTTTGGTGAAGCATAGAAGTAGAGTCATATGGGGTGAGTCCAAAATTGCAAGATCAACATGTCTAGCCTCTGAACACAATTTTGATTATGGAGTTTATAAATGGACTGTTCAACTTGTCACAAATGAGAATCGTTTTGAGAAAATATTATTTCCCATCTTCTGGGGTCTCATGACTCTCAGGTACGTACGTATTTTTATTTTACATCGTTTTTATCGGTATTTTAAATGCGAAATAAATAGTTACTAGGTTGGAAGTCTGAACCCATAACTTTTACTTTAGTATAAAATAACAAATCAGAATATTGTATTTTATTGAATTATATGAAAATTTTACATGCAGTACATTTGGAAACTTG</genome_strand>
        <mrna_strand>TAAGACGCATGCAGAATCTCTCTGGATACATTTTTGGTACTGTTTGGTGGGGAATTGCTCTTAACTTGATTGCTTATTTTGTTGCCTCCCAT..........................................................................................................................................................................................................................................................................................................................................................................................GCAGTGGGAGCATGTTGGTACTTGCTAGGAATCCAAAGGGCAGCAAAATGTTTGAAACAACAGTGTAGAGTTACAAATGGTTGTAGCCTAAGAATGTTGGCATGTGAAGAGAAAATATTTTATGGAACAAGTAGTTTGGTGAAGCATAGAAGTAGAGTCATATGGGGTGAGTCCAAAATTGCAAGATCAACATGTCTAGCCTCTGAACACAATTTTGATTATGGAGTTTATAAATGGACTGTTCAACTTGTCACAAATGAGAATCGTTTTGAGAAAATATTATTTCCCATCTTCTGGGGTCTCATGACTCTCAG................................................................................................................................................................TACATTTGGAAACTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E237483" ref_strand="+" ref_description="SGN-E237483 	[cLED-19-C6]">
      <seq>catctccaaagcagtcaagaacttagagatggtgtcaaaagttgttgcatgttgggccctggaaacttcagcggcgacgaacttctctcatggtgcctccggaaacccttcgtggagcgtctaccgccttcctcctcatcgctagtgactctcgagaccacagaagcgtttggcctcgaagcagatgatgtcaagtatgtcactcaacatttccgctacacatttgtgaatgagaaagtgaagagaagcgccagatattattctccaggatggcgaacttgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="+" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="109306" stop="110439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="109606" g_stop="109697" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="92" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="109698" i_stop="109947" i_length="250">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.945" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="109948" g_stop="110139" g_length="192"/>
          <reference_exon_boundary r_type="cDNA" r_start="93" r_stop="284" r_length="192" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="+" ref_id="SGN-E237483" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>284</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="109606" e_stop="109697"/>
          <exon e_start="109948" e_stop="110139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATCTCCAAAGCAGTCAAGAACTTAGAGATGGTGTCAAAAGTTGTTGCATGTTGGGCCCTGGAAACTTCAGCGGCGACGAACTTCTCTCATGGTAAGTTTAGGAGTGAGAGTAGTTGTTTGTATTTGGGTAATTAATTTGAAAAACAGATCTAGTAAACTAGAATGGTAGTGTACACAAGGTTAATTCACTCTAGGATTGATGGTCCCATCCCAATGATCACTAAAATAAAATGATAACACCTTTGGCTTCCCAGAATCTTGGGTAAACAGGCTTTCGTATATTTTGATGTGTTAATAGCCTGAATATTTTGTGTTCTTCATTCATTTTTTCCCCCCAACAGGTGCCTCCGGAAACCCTTCGTGGAGCGTCTACCGCCTTCCTCCTCATCGCTAGTGACTCTCGAGACCACAGAAGCGTTTGGCCTCGAAGCAGATGATGTCAAGTATGTCACTCAACATTTCCGCTACACATTTGTGAATGAGAAAGTGAAGAGAAGCGCCAGATATTATTCTCCAGGATGGCGAACTTGGGC</genome_strand>
        <mrna_strand>CATCTCCAAAGCAGTCAAGAACTTAGAGATGGTGTCAAAAGTTGTTGCATGTTGGGCCCTGGAAACTTCAGCGGCGACGAACTTCTCTCATG..........................................................................................................................................................................................................................................................GTGCCTCCGGAAACCCTTCGTGGAGCGTCTACCGCCTTCCTCCTCATCGCTAGTGACTCTCGAGACCACAGAAGCGTTTGGCCTCGAAGCAGATGATGTCAAGTATGTCACTCAACATTTCCGCTACACATTTGTGAATGAGAAAGTGAAGAGAAGCGCCAGATATTATTCTCCAGGATGGCGAACTTGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-g2pMMT/sgn_ests_tomato" ref_id="SGN-E391686" ref_strand="-" ref_description="SGN-E391686 	[TUS-27-D20]">
      <seq>gaaggtgaaagaaggcacaccgatttatgtacctgagttgtttgatgaacaaaaggataaagtttgtattgagcgtactctaaaggtggtgtttttggaccctgaacgcccttttccagcactggataaaataaaacgtcagctggcccaagctgagggtgcaacagaaggtgagaagaaacctcctgttgacacaggtccgaaagttgtgggagaaggcttaatagtagatgaatggaaagagcggagggagaggtatcttgctcgccaacaagttgaggcagtggattcagtaaagcagtagagagtgtttatgtaagtgcgtctttttccagaatagcaatgtataatcagatatgcactttttattattgcctttctttggattgatggtgtagaaggttaatgcaatgcttcatgtaaagaagaacactgagtggagatttaagattatataagattagaaataattatattcaggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-OMsuw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0140M01.1" temp_strand="-" temp_description="C12HBa0140M01.1  AC209533.1 htgs_phase:3 submitted_to_sgn_as:C12HBa0140M01 sequenced_by:enea">
        <position start="111509" stop="110271"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="111201" g_stop="111124" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="41" r_stop="118" r_length="78" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="111123" i_stop="111041" i_length="83">
            <donor d_prob="0.969" d_score="0.96"/>
            <acceptor a_prob="0.797" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="111040" g_stop="110921" g_length="120"/>
          <reference_exon_boundary r_type="cDNA" r_start="119" r_stop="238" r_length="120" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="110920" i_stop="110825" i_length="96">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.876" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="110824" g_stop="110571" g_length="254"/>
          <reference_exon_boundary r_type="cDNA" r_start="239" r_stop="492" r_length="254" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0140M01.1" gen_strand="-" ref_id="SGN-E391686" ref_strand="-">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>452</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0140M01.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391686" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="111201" e_stop="111124"/>
          <exon e_start="111040" e_stop="110921"/>
          <exon e_start="110824" e_stop="110571"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATGAACAAAAGGATAAAGTCTGTATTGAGCGTACTCTAAAGGTGGTGTTCTTGGACCCTGAACGCCCTTCTCCAGTAAGCGTTGAACATGTTATATTTGTTTGTTATGCATTGTGCTAATGGGCAATCTCCAACCAAAGCTATTTGAATGATTAAAGGCACTGGATAAACTAAAACGTCAGCTGGCCCAAGCTGAGGCTGCAACAGAAGCTGAGAAGAAACCTCCTGTTGACACAGGTCCGAAAGTTGTGGGAGAAGGCTTAATAGTAGATGAATGGGTAAGTATCTCCTGTTTGTGTAAATAAATGAATAATTCTAAGTTCCGACTTCCTTCATCCCTCTTACAATGTGTTTCTGCTCACTATGCTTTATAGAAAGAGCGGAGGGAGAGGTATCTTGCTCGCCAACAAGTTGAGGCAGTGGATTCAGTAAAGCAGTAGAGAGTGTTTATGTAAGTGCGTCTTTTTCCAGAATAGCAATGTATAATCAGATATGCACTTCTTATTATTGCCTTTCTTTGGATTGATGGTGTAGAAGGTTAATGCAATGCTTCATGTAAAGAAGAACACTGAGTGGAGATTTAAGATTATATAAGATTAGAAATAATTATATTCAGGAAAAGATACAA</genome_strand>
        <mrna_strand>TTTGATGAACAAAAGGATAAAGTTTGTATTGAGCGTACTCTAAAGGTGGTGTTTTTGGACCCTGAACGCCCTTTTCCA...................................................................................GCACTGGATAAAATAAAACGTCAGCTGGCCCAAGCTGAGGGTGCAACAGAAGGTGAGAAGAAACCTCCTGTTGACACAGGTCCGAAAGTTGTGGGAGAAGGCTTAATAGTAGATGAATGG................................................................................................AAAGAGCGGAGGGAGAGGTATCTTGCTCGCCAACAAGTTGAGGCAGTGGATTCAGTAAAGCAGTAGAGAGTGTTTATGTAAGTGCGTCTTTTTCCAGAATAGCAATGTATAATCAGATATGCACTTTTTATTATTGCCTTTCTTTGGATTGATGGTGTAGAAGGTTAATGCAATGCTTCATGTAAAGAAGAACACTGAGTGGAGATTTAAGATTATATAAGATTAGAAATAATTATATTCAGGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>131</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="9902" PGL_stop="13203"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="9902" e_stop="10045"/>
            <exon e_start="10202" e_stop="10455"/>
            <exon e_start="11024" e_stop="11141"/>
            <exon e_start="11213" e_stop="11395"/>
            <exon e_start="12270" e_stop="12601"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.684" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.338" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9902" e_stop="10045" e_length="144"/>
          </exon>
          <intron i_serial="1" don_prob="0.684" acc_prob="0.950">
            <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10202" e_stop="10455" e_length="254"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.338">
            <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11024" e_stop="11141" e_length="118"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.905">
            <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11213" e_stop="11395" e_length="183"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874"/>
          </intron>
          <exon e_serial="5" e_score="0.991">
            <gDNA_exon_boundary e_start="12270" e_stop="12601" e_length="332"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9902" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9921" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9921" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9928" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9938" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9947" stop="10045"/>
              <exon start="10202" stop="10449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9948" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9956" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9957" stop="10045"/>
              <exon start="10202" stop="10438"/>
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          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAGTGACTCTCATCATCTTTCTAGTAATCTACTATTGTTCTCTACATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG : CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG : CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG : GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA : TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCAGTTTACACGCATATTAGTTAA</gDNA_template>
            <first_frame> L  S  D  S  H  H  L  S  S  N  L  L  L  F  S  T  L  Q  E  *  H  P  H  P  L  P  L  F  S  T  H  T  L  I  N  M  A  S  S  T  L  S  H  V  T  P  S  Q  :  L  C  S  S  K  S  G  I  S  S  V  S  Q  A  L  L  V  K  P  M  K  I  N  G  H  G  M  G  K  D  N  K  R  M  K  V  K  C  M  A  A  S  I  P  A  D  D  R  V  P  D  M  E  K  R  N  L  M  N  L  L  L  L  G  A  L  A  L  P  T  G  G  M  L  V  P  Y  A  T  F  F  A  P  P  G :   S  G  G  G  S  G  G  T  P  A  K  D  A  N  G  N  D  V  V  V  T  E  W  L  K  T  H  A  P  G  T  R  T  L  T  Q  G  L  K  :  G  D  P  T  Y  L  V  V  E  N  D  G  T  L  A  T  Y  G  I  N  A  V  C  T  H  L  G  C  V  V  P  W  N  T  A  E  N  K  F  I  C  P  C  H  G  S  Q  Y  N  N  Q  G  K  V  V  R  G  P  A  P  L  :  S  L  A  L  A  H  A  D  V  D  D  G  K  V  V  F  V  P  W  V  E  T  D  F  R  T  G  D  A  P  W  W  A  *  K  S  H  L  A  S  I  I  S  S  I  *  Y  S  L  V  P  L  L  H  R  S  L  F  P  F  L  L  *  R  K  K  N  V  T  I  E  T  L  P  K  I  T  F  L  I  W  D  T  V  L  F  V  I  V  Y  Y  H  F  I  F  I  L  *  Q  W  C  L  N  Q  F  T  R  I  L  V   </first_frame>
            <second_frame>  *  V  T  L  I  I  F  L  V  I  Y  Y  C  S  L  H  Y  K  N  N  I  P  I  H  F  L  S  S  Q  H  T  H  *  L  T  W  L  L  P  L  F  L  M  *  L  L  L  S :   Y  A  Q  A  K  V  V  F  H  R  F  H  K  P  C  L  *  S  R  *  R  L  M  V  M  E  W  E  R  I  I  R  G  *  K  *  N  V  W  Q  L  V  F  Q  Q  M  I  E  C  L  I  W  R  K  G  I  L  *  I  C  F  Y  W  V  H  L  L  Y  Q  L  V  E  C  L  Y  L  M  L  L  S  L  H  L  L   : A  Q  E  V  V  V  V  V  P  L  P  K  M  L  M  A  M  M  L  L  *  L  N  G  S  K  L  M  H  L  E  L  E  P  S  H  K  D  *  R :   E  I  L  L  T  L  L  W  R  T  M  E  H  S  R  P  M  V  S  M  L  C  A  L  T  L  V  V  S  C  R  G  I  L  L  R  T  S  S  F  A  L  A  M  D  L  N  T  T  I  K  E  K  L  L  E  D  L  L  L  Y :   P  W  H  W  L  M  Q  T  L  M  M  G  K  W  C  L  F  H  G  L  K  Q  T  S  E  L  V  M  L  H  G  G  L  R  N  P  I  *  L  L  L  L  V  V  Y  N  I  L  L  Y  H  C  Y  I  E  A  Y  S  P  F  Y  Y  K  G  K  K  M  *  L  L  K  H  Y  P  K  *  H  F  S  F  G  I  Q  F  F  L  *  L  F  I  I  I  S  F  L  F  Y  N  S  G  V  *  I  S  L  H  A  Y  *  L  </second_frame>
            <third_frame>   E  *  L  S  S  S  F  *  *  S  T  I  V  L  Y  I  T  R  I  T  S  P  S  T  S  S  L  L  N  T  H  I  N  *  H  G  F  F  H  S  F  S  C  N  S  F  S   : A  M  L  K  Q  K  W  Y  F  I  G  F  T  S  L  A  C  E  A  D  E  D  *  W  S  W  N  G  K  G  *  *  E  D  E  S  E  M  Y  G  S  *  Y  S  S  R  *  *  S  A  *  Y  G  E  K  E  S  Y  E  F  A  F  I  G  C  T  C  F  T  N  W  W  N  A  C  T  L  C  Y  F  L  C  T  S  W  :  L  R  R  W  *  W  W  Y  P  C  Q  R  C  *  W  Q  *  C  C  C  D  *  M  A  Q  N  S  C  T  W  N  S  N  P  H  T  R  T  K   : G  R  S  Y  L  P  C  C  G  E  R  W  N  T  R  D  L  W  Y  Q  C  C  V  H  S  P  W  L  C  R  A  V  E  Y  C  *  E  Q  V  H  L  P  L  P  W  I  S  I  Q  Q  S  R  K  S  C  *  R  T  C  S  F   : I  L  G  I  G  S  C  R  R  *  *  W  E  S  G  V  C  S  M  G  *  N  R  L  Q  N  W  *  C  S  M  V  G  L  E  I  P  S  S  F  Y  Y  *  *  Y  I  I  F  S  C  T  I  V  T  *  K  L  I  P  L  F  I  I  K  E  K  K  C  N  Y  *  N  I  T  Q  N  N  I  S  H  L  G  Y  S  S  F  C  N  C  L  L  S  F  H  F  Y  F  I  T  V  V  S  E  S  V  Y  T  H  I  S  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9962" stop="10045"/>
                    <exon start="10202" stop="10455"/>
                    <exon start="11024" stop="11141"/>
                    <exon start="11213" stop="11395"/>
                    <exon start="12270" stop="12371"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>738</number_coding_nucleotides>
                  <number_encoded_amino_acids>246</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HPHPLPLFSTHTLINMASSTLSHVTPSQLCSSKSGISSVSQALLVKPMKINGHGMGKDNKRMKVKCMAASIPADDRVPDMEKRNLMNLLLLGALALPTGGMLVPYATFFAPPGSGGGSGGTPAKDANGNDVVVTEWLKTHAPGTRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPWNTAENKFICPCHGSQYNNQGKVVRGPAPLSLALAHADVDDGKVVFVPWVETDFRTGDAPWWA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="9902" e_stop="10045"/>
            <exon e_start="10202" e_stop="10455"/>
            <exon e_start="11024" e_stop="11141"/>
            <exon e_start="11213" e_stop="11395"/>
            <exon e_start="12270" e_stop="12565"/>
            <exon e_start="13190" e_stop="13203"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.684" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.338" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.993"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9902" e_stop="10045" e_length="144"/>
          </exon>
          <intron i_serial="1" don_prob="0.684" acc_prob="0.950">
            <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10202" e_stop="10455" e_length="254"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.338">
            <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11024" e_stop="11141" e_length="118"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.905">
            <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11213" e_stop="11395" e_length="183"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="12270" e_stop="12565" e_length="296"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12566" i_stop="13189" i_length="624"/>
          </intron>
          <exon e_serial="6" e_score="0.929">
            <gDNA_exon_boundary e_start="13190" e_stop="13203" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9902" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9921" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9921" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9928" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9938" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9947" stop="10045"/>
              <exon start="10202" stop="10449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9948" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9956" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9957" stop="10045"/>
              <exon start="10202" stop="10438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9964" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9965" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9967" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9967" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9971" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9972" stop="10045"/>
              <exon start="10202" stop="10415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9976" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9978" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9979" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9979" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9987" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9997" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10001" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10002" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10002" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10003" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10003" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10003" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10003" stop="10045"/>
              <exon start="10202" stop="10455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10004" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10009" stop="10045"/>
              <exon start="10202" stop="10447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10010" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10011" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10012" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10015" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10015" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10016" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10016" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10018" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10021" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10021" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10024" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10032" stop="10045"/>
              <exon start="10202" stop="10406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10034" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10038" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10039" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10040" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10206" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10206" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10213" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10214" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10214" stop="10455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10229" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10266" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373995" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10283" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10335" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10361" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10375" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373242" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10393" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11031" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239225" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11039" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11041" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253134" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11060" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286738" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11072" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279913" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11077" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11095" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11096" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11110" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11131" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11234" stop="11395"/>
              <exon start="12270" stop="12460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239148" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11263" stop="11395"/>
              <exon start="12270" stop="12565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217009" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11264" stop="11395"/>
              <exon start="12270" stop="12565"/>
              <exon start="13190" stop="13203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218196" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11273" stop="11395"/>
              <exon start="12270" stop="12565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11323" stop="11395"/>
              <exon start="12270" stop="12565"/>
              <exon start="13190" stop="13203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218261" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11326" stop="11395"/>
              <exon start="12270" stop="12565"/>
              <exon start="13190" stop="13203"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217840" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12310" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAGTGACTCTCATCATCTTTCTAGTAATCTACTATTGTTCTCTACATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG : CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG : CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG : GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA : TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACA : AAAAAAATAAAAAA</gDNA_template>
            <first_frame> L  S  D  S  H  H  L  S  S  N  L  L  L  F  S  T  L  Q  E  *  H  P  H  P  L  P  L  F  S  T  H  T  L  I  N  M  A  S  S  T  L  S  H  V  T  P  S  Q  :  L  C  S  S  K  S  G  I  S  S  V  S  Q  A  L  L  V  K  P  M  K  I  N  G  H  G  M  G  K  D  N  K  R  M  K  V  K  C  M  A  A  S  I  P  A  D  D  R  V  P  D  M  E  K  R  N  L  M  N  L  L  L  L  G  A  L  A  L  P  T  G  G  M  L  V  P  Y  A  T  F  F  A  P  P  G :   S  G  G  G  S  G  G  T  P  A  K  D  A  N  G  N  D  V  V  V  T  E  W  L  K  T  H  A  P  G  T  R  T  L  T  Q  G  L  K  :  G  D  P  T  Y  L  V  V  E  N  D  G  T  L  A  T  Y  G  I  N  A  V  C  T  H  L  G  C  V  V  P  W  N  T  A  E  N  K  F  I  C  P  C  H  G  S  Q  Y  N  N  Q  G  K  V  V  R  G  P  A  P  L  :  S  L  A  L  A  H  A  D  V  D  D  G  K  V  V  F  V  P  W  V  E  T  D  F  R  T  G  D  A  P  W  W  A  *  K  S  H  L  A  S  I  I  S  S  I  *  Y  S  L  V  P  L  L  H  R  S  L  F  P  F  L  L  *  R  K  K  N  V  T  I  E  T  L  P  K  I  T  F  L  I  W  D  T  V  L  F  V  I  V  Y  Y  H  F  I  F  I  L  *  Q :   K  K  *  K  </first_frame>
            <second_frame>  *  V  T  L  I  I  F  L  V  I  Y  Y  C  S  L  H  Y  K  N  N  I  P  I  H  F  L  S  S  Q  H  T  H  *  L  T  W  L  L  P  L  F  L  M  *  L  L  L  S :   Y  A  Q  A  K  V  V  F  H  R  F  H  K  P  C  L  *  S  R  *  R  L  M  V  M  E  W  E  R  I  I  R  G  *  K  *  N  V  W  Q  L  V  F  Q  Q  M  I  E  C  L  I  W  R  K  G  I  L  *  I  C  F  Y  W  V  H  L  L  Y  Q  L  V  E  C  L  Y  L  M  L  L  S  L  H  L  L   : A  Q  E  V  V  V  V  V  P  L  P  K  M  L  M  A  M  M  L  L  *  L  N  G  S  K  L  M  H  L  E  L  E  P  S  H  K  D  *  R :   E  I  L  L  T  L  L  W  R  T  M  E  H  S  R  P  M  V  S  M  L  C  A  L  T  L  V  V  S  C  R  G  I  L  L  R  T  S  S  F  A  L  A  M  D  L  N  T  T  I  K  E  K  L  L  E  D  L  L  L  Y :   P  W  H  W  L  M  Q  T  L  M  M  G  K  W  C  L  F  H  G  L  K  Q  T  S  E  L  V  M  L  H  G  G  L  R  N  P  I  *  L  L  L  L  V  V  Y  N  I  L  L  Y  H  C  Y  I  E  A  Y  S  P  F  Y  Y  K  G  K  K  M  *  L  L  K  H  Y  P  K  *  H  F  S  F  G  I  Q  F  F  L  *  L  F  I  I  I  S  F  L  F  Y  N   : K  K  N  K  K </second_frame>
            <third_frame>   E  *  L  S  S  S  F  *  *  S  T  I  V  L  Y  I  T  R  I  T  S  P  S  T  S  S  L  L  N  T  H  I  N  *  H  G  F  F  H  S  F  S  C  N  S  F  S   : A  M  L  K  Q  K  W  Y  F  I  G  F  T  S  L  A  C  E  A  D  E  D  *  W  S  W  N  G  K  G  *  *  E  D  E  S  E  M  Y  G  S  *  Y  S  S  R  *  *  S  A  *  Y  G  E  K  E  S  Y  E  F  A  F  I  G  C  T  C  F  T  N  W  W  N  A  C  T  L  C  Y  F  L  C  T  S  W  :  L  R  R  W  *  W  W  Y  P  C  Q  R  C  *  W  Q  *  C  C  C  D  *  M  A  Q  N  S  C  T  W  N  S  N  P  H  T  R  T  K   : G  R  S  Y  L  P  C  C  G  E  R  W  N  T  R  D  L  W  Y  Q  C  C  V  H  S  P  W  L  C  R  A  V  E  Y  C  *  E  Q  V  H  L  P  L  P  W  I  S  I  Q  Q  S  R  K  S  C  *  R  T  C  S  F   : I  L  G  I  G  S  C  R  R  *  *  W  E  S  G  V  C  S  M  G  *  N  R  L  Q  N  W  *  C  S  M  V  G  L  E  I  P  S  S  F  Y  Y  *  *  Y  I  I  F  S  C  T  I  V  T  *  K  L  I  P  L  F  I  I  K  E  K  K  C  N  Y  *  N  I  T  Q  N  N  I  S  H  L  G  Y  S  S  F  C  N  C  L  L  S  F  H  F  Y  F  I  T  :  K  K  I  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9962" stop="10045"/>
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                    <exon start="11213" stop="11395"/>
                    <exon start="12270" stop="12371"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>738</number_coding_nucleotides>
                  <number_encoded_amino_acids>246</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HPHPLPLFSTHTLINMASSTLSHVTPSQLCSSKSGISSVSQALLVKPMKINGHGMGKDNKRMKVKCMAASIPADDRVPDMEKRNLMNLLLLGALALPTGGMLVPYATFFAPPGSGGGSGGTPAKDANGNDVVVTEWLKTHAPGTRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPWNTAENKFICPCHGSQYNNQGKVVRGPAPLSLALAHADVDDGKVVFVPWVETDFRTGDAPWWA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="9902" e_stop="10045"/>
            <exon e_start="10202" e_stop="10455"/>
            <exon e_start="11024" e_stop="11141"/>
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            <exon e_start="12270" e_stop="12565"/>
            <exon e_start="13189" e_stop="13202"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.684" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.338" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.993"/>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9902" e_stop="10045" e_length="144"/>
          </exon>
          <intron i_serial="1" don_prob="0.684" acc_prob="0.950">
            <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10202" e_stop="10455" e_length="254"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.338">
            <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11024" e_stop="11141" e_length="118"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.905">
            <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11213" e_stop="11395" e_length="183"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="12270" e_stop="12565" e_length="296"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12566" i_stop="13188" i_length="623"/>
          </intron>
          <exon e_serial="6" e_score="0.929">
            <gDNA_exon_boundary e_start="13189" e_stop="13202" e_length="14"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9902" stop="10045"/>
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              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261043" strand="+"/>
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          <PGS_line>
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              <exon start="12270" stop="12328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
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            <referenceDNA id="SGN-E297511" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E341858" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E279054" strand="+"/>
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          <PGS_line>
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            <referenceDNA id="SGN-E553924" strand="+"/>
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          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9957" stop="10045"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9964" stop="10045"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390593" strand="+"/>
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          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283072" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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              <exon start="12270" stop="12302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9967" stop="10045"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9971" stop="10045"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340571" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9972" stop="10045"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216952" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299038" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321013" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347825" strand="+"/>
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          <PGS_line>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295462" strand="+"/>
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          <PGS_line>
            <gDNA_exon_coordinates>
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          <PGS_line>
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            <referenceDNA id="SGN-E322140" strand="+"/>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
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          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10266" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373995" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10283" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10335" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10361" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10375" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373242" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10393" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11031" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239225" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11039" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11041" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253134" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11060" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286738" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11072" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279913" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11077" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11095" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11096" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11110" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11131" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11234" stop="11395"/>
              <exon start="12270" stop="12460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239148" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11263" stop="11395"/>
              <exon start="12270" stop="12565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217009" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11273" stop="11395"/>
              <exon start="12270" stop="12565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11361" stop="11395"/>
              <exon start="12270" stop="12565"/>
              <exon start="13189" stop="13202"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217761" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12310" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAGTGACTCTCATCATCTTTCTAGTAATCTACTATTGTTCTCTACATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG : CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG : CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG : GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA : TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACA : AAAAAAAATAAAAA</gDNA_template>
            <first_frame> L  S  D  S  H  H  L  S  S  N  L  L  L  F  S  T  L  Q  E  *  H  P  H  P  L  P  L  F  S  T  H  T  L  I  N  M  A  S  S  T  L  S  H  V  T  P  S  Q  :  L  C  S  S  K  S  G  I  S  S  V  S  Q  A  L  L  V  K  P  M  K  I  N  G  H  G  M  G  K  D  N  K  R  M  K  V  K  C  M  A  A  S  I  P  A  D  D  R  V  P  D  M  E  K  R  N  L  M  N  L  L  L  L  G  A  L  A  L  P  T  G  G  M  L  V  P  Y  A  T  F  F  A  P  P  G :   S  G  G  G  S  G  G  T  P  A  K  D  A  N  G  N  D  V  V  V  T  E  W  L  K  T  H  A  P  G  T  R  T  L  T  Q  G  L  K  :  G  D  P  T  Y  L  V  V  E  N  D  G  T  L  A  T  Y  G  I  N  A  V  C  T  H  L  G  C  V  V  P  W  N  T  A  E  N  K  F  I  C  P  C  H  G  S  Q  Y  N  N  Q  G  K  V  V  R  G  P  A  P  L  :  S  L  A  L  A  H  A  D  V  D  D  G  K  V  V  F  V  P  W  V  E  T  D  F  R  T  G  D  A  P  W  W  A  *  K  S  H  L  A  S  I  I  S  S  I  *  Y  S  L  V  P  L  L  H  R  S  L  F  P  F  L  L  *  R  K  K  N  V  T  I  E  T  L  P  K  I  T  F  L  I  W  D  T  V  L  F  V  I  V  Y  Y  H  F  I  F  I  L  *  Q :   K  K  I  K  </first_frame>
            <second_frame>  *  V  T  L  I  I  F  L  V  I  Y  Y  C  S  L  H  Y  K  N  N  I  P  I  H  F  L  S  S  Q  H  T  H  *  L  T  W  L  L  P  L  F  L  M  *  L  L  L  S :   Y  A  Q  A  K  V  V  F  H  R  F  H  K  P  C  L  *  S  R  *  R  L  M  V  M  E  W  E  R  I  I  R  G  *  K  *  N  V  W  Q  L  V  F  Q  Q  M  I  E  C  L  I  W  R  K  G  I  L  *  I  C  F  Y  W  V  H  L  L  Y  Q  L  V  E  C  L  Y  L  M  L  L  S  L  H  L  L   : A  Q  E  V  V  V  V  V  P  L  P  K  M  L  M  A  M  M  L  L  *  L  N  G  S  K  L  M  H  L  E  L  E  P  S  H  K  D  *  R :   E  I  L  L  T  L  L  W  R  T  M  E  H  S  R  P  M  V  S  M  L  C  A  L  T  L  V  V  S  C  R  G  I  L  L  R  T  S  S  F  A  L  A  M  D  L  N  T  T  I  K  E  K  L  L  E  D  L  L  L  Y :   P  W  H  W  L  M  Q  T  L  M  M  G  K  W  C  L  F  H  G  L  K  Q  T  S  E  L  V  M  L  H  G  G  L  R  N  P  I  *  L  L  L  L  V  V  Y  N  I  L  L  Y  H  C  Y  I  E  A  Y  S  P  F  Y  Y  K  G  K  K  M  *  L  L  K  H  Y  P  K  *  H  F  S  F  G  I  Q  F  F  L  *  L  F  I  I  I  S  F  L  F  Y  N   : K  K  K  *  K </second_frame>
            <third_frame>   E  *  L  S  S  S  F  *  *  S  T  I  V  L  Y  I  T  R  I  T  S  P  S  T  S  S  L  L  N  T  H  I  N  *  H  G  F  F  H  S  F  S  C  N  S  F  S   : A  M  L  K  Q  K  W  Y  F  I  G  F  T  S  L  A  C  E  A  D  E  D  *  W  S  W  N  G  K  G  *  *  E  D  E  S  E  M  Y  G  S  *  Y  S  S  R  *  *  S  A  *  Y  G  E  K  E  S  Y  E  F  A  F  I  G  C  T  C  F  T  N  W  W  N  A  C  T  L  C  Y  F  L  C  T  S  W  :  L  R  R  W  *  W  W  Y  P  C  Q  R  C  *  W  Q  *  C  C  C  D  *  M  A  Q  N  S  C  T  W  N  S  N  P  H  T  R  T  K   : G  R  S  Y  L  P  C  C  G  E  R  W  N  T  R  D  L  W  Y  Q  C  C  V  H  S  P  W  L  C  R  A  V  E  Y  C  *  E  Q  V  H  L  P  L  P  W  I  S  I  Q  Q  S  R  K  S  C  *  R  T  C  S  F   : I  L  G  I  G  S  C  R  R  *  *  W  E  S  G  V  C  S  M  G  *  N  R  L  Q  N  W  *  C  S  M  V  G  L  E  I  P  S  S  F  Y  Y  *  *  Y  I  I  F  S  C  T  I  V  T  *  K  L  I  P  L  F  I  I  K  E  K  K  C  N  Y  *  N  I  T  Q  N  N  I  S  H  L  G  Y  S  S  F  C  N  C  L  L  S  F  H  F  Y  F  I  T  :  K  K  N  K   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9962" stop="10045"/>
                    <exon start="10202" stop="10455"/>
                    <exon start="11024" stop="11141"/>
                    <exon start="11213" stop="11395"/>
                    <exon start="12270" stop="12371"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>738</number_coding_nucleotides>
                  <number_encoded_amino_acids>246</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HPHPLPLFSTHTLINMASSTLSHVTPSQLCSSKSGISSVSQALLVKPMKINGHGMGKDNKRMKVKCMAASIPADDRVPDMEKRNLMNLLLLGALALPTGGMLVPYATFFAPPGSGGGSGGTPAKDANGNDVVVTEWLKTHAPGTRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPWNTAENKFICPCHGSQYNNQGKVVRGPAPLSLALAHADVDDGKVVFVPWVETDFRTGDAPWWA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="9902" e_stop="10045"/>
            <exon e_start="10202" e_stop="10455"/>
            <exon e_start="11024" e_stop="11141"/>
            <exon e_start="11213" e_stop="11395"/>
            <exon e_start="12270" e_stop="12565"/>
            <exon e_start="12828" e_stop="12836"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.684" acc_prob="0.950" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.338" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.993"/>
          <exon-only e_score="0.889"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="9902" e_stop="10045" e_length="144"/>
          </exon>
          <intron i_serial="1" don_prob="0.684" acc_prob="0.950">
            <gDNA_intron_boundary i_start="10046" i_stop="10201" i_length="156"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="10202" e_stop="10455" e_length="254"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.338">
            <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11024" e_stop="11141" e_length="118"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.905">
            <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="11213" e_stop="11395" e_length="183"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="12270" e_stop="12565" e_length="296"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12566" i_stop="12827" i_length="262"/>
          </intron>
          <exon e_serial="6" e_score="0.889">
            <gDNA_exon_boundary e_start="12828" e_stop="12836" e_length="9"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9902" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9921" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261043" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9921" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9928" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297511" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9938" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12327"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341858" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9947" stop="10045"/>
              <exon start="10202" stop="10449"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279054" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9948" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E553924" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9956" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11298"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211792" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9957" stop="10045"/>
              <exon start="10202" stop="10438"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E554238" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9964" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11269"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E390593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9965" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11130"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283072" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9967" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342261" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9967" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11365"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9971" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9972" stop="10045"/>
              <exon start="10202" stop="10415"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E216952" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9976" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299038" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9978" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11244"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321013" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9979" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12332"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9979" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11225"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348944" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9987" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329545" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="9997" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11318"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314101" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10001" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295462" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10002" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321569" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10002" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12411"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E322140" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10003" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11292"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278810" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10003" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11291"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299266" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10003" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11286"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282552" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10003" stop="10045"/>
              <exon start="10202" stop="10455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10004" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11231"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282834" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10009" stop="10045"/>
              <exon start="10202" stop="10447"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283686" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10010" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11374"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10011" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344831" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10012" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11360"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10015" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12309"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253876" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10015" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E288213" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10016" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291301" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10016" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283418" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10018" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E277579" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10021" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10021" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11372"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321189" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10024" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282000" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10032" stop="10045"/>
              <exon start="10202" stop="10406"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340572" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10034" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297532" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10038" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347873" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10039" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12305"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329281" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10040" stop="10045"/>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11253"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289356" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10206" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10206" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10213" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10214" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10214" stop="10455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10229" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10266" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373995" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10283" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10335" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10361" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10375" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373242" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10393" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11031" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239225" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11039" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11041" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253134" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11060" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286738" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11072" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279913" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11077" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11095" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11096" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11110" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11131" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11234" stop="11395"/>
              <exon start="12270" stop="12460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239148" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11263" stop="11395"/>
              <exon start="12270" stop="12565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217009" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11273" stop="11395"/>
              <exon start="12270" stop="12565"/>
              <exon start="12828" stop="12836"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E297201" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11273" stop="11395"/>
              <exon start="12270" stop="12565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12310" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAGTGACTCTCATCATCTTTCTAGTAATCTACTATTGTTCTCTACATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGGCTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAG : CTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG : CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG : GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA : TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACA : CAAAAAAAA</gDNA_template>
            <first_frame> L  S  D  S  H  H  L  S  S  N  L  L  L  F  S  T  L  Q  E  *  H  P  H  P  L  P  L  F  S  T  H  T  L  I  N  M  A  S  S  T  L  S  H  V  T  P  S  Q  :  L  C  S  S  K  S  G  I  S  S  V  S  Q  A  L  L  V  K  P  M  K  I  N  G  H  G  M  G  K  D  N  K  R  M  K  V  K  C  M  A  A  S  I  P  A  D  D  R  V  P  D  M  E  K  R  N  L  M  N  L  L  L  L  G  A  L  A  L  P  T  G  G  M  L  V  P  Y  A  T  F  F  A  P  P  G :   S  G  G  G  S  G  G  T  P  A  K  D  A  N  G  N  D  V  V  V  T  E  W  L  K  T  H  A  P  G  T  R  T  L  T  Q  G  L  K  :  G  D  P  T  Y  L  V  V  E  N  D  G  T  L  A  T  Y  G  I  N  A  V  C  T  H  L  G  C  V  V  P  W  N  T  A  E  N  K  F  I  C  P  C  H  G  S  Q  Y  N  N  Q  G  K  V  V  R  G  P  A  P  L  :  S  L  A  L  A  H  A  D  V  D  D  G  K  V  V  F  V  P  W  V  E  T  D  F  R  T  G  D  A  P  W  W  A  *  K  S  H  L  A  S  I  I  S  S  I  *  Y  S  L  V  P  L  L  H  R  S  L  F  P  F  L  L  *  R  K  K  N  V  T  I  E  T  L  P  K  I  T  F  L  I  W  D  T  V  L  F  V  I  V  Y  Y  H  F  I  F  I  L  *  H :   K  K   </first_frame>
            <second_frame>  *  V  T  L  I  I  F  L  V  I  Y  Y  C  S  L  H  Y  K  N  N  I  P  I  H  F  L  S  S  Q  H  T  H  *  L  T  W  L  L  P  L  F  L  M  *  L  L  L  S :   Y  A  Q  A  K  V  V  F  H  R  F  H  K  P  C  L  *  S  R  *  R  L  M  V  M  E  W  E  R  I  I  R  G  *  K  *  N  V  W  Q  L  V  F  Q  Q  M  I  E  C  L  I  W  R  K  G  I  L  *  I  C  F  Y  W  V  H  L  L  Y  Q  L  V  E  C  L  Y  L  M  L  L  S  L  H  L  L   : A  Q  E  V  V  V  V  V  P  L  P  K  M  L  M  A  M  M  L  L  *  L  N  G  S  K  L  M  H  L  E  L  E  P  S  H  K  D  *  R :   E  I  L  L  T  L  L  W  R  T  M  E  H  S  R  P  M  V  S  M  L  C  A  L  T  L  V  V  S  C  R  G  I  L  L  R  T  S  S  F  A  L  A  M  D  L  N  T  T  I  K  E  K  L  L  E  D  L  L  L  Y :   P  W  H  W  L  M  Q  T  L  M  M  G  K  W  C  L  F  H  G  L  K  Q  T  S  E  L  V  M  L  H  G  G  L  R  N  P  I  *  L  L  L  L  V  V  Y  N  I  L  L  Y  H  C  Y  I  E  A  Y  S  P  F  Y  Y  K  G  K  K  M  *  L  L  K  H  Y  P  K  *  H  F  S  F  G  I  Q  F  F  L  *  L  F  I  I  I  S  F  L  F  Y  N   : T  K  K  </second_frame>
            <third_frame>   E  *  L  S  S  S  F  *  *  S  T  I  V  L  Y  I  T  R  I  T  S  P  S  T  S  S  L  L  N  T  H  I  N  *  H  G  F  F  H  S  F  S  C  N  S  F  S   : A  M  L  K  Q  K  W  Y  F  I  G  F  T  S  L  A  C  E  A  D  E  D  *  W  S  W  N  G  K  G  *  *  E  D  E  S  E  M  Y  G  S  *  Y  S  S  R  *  *  S  A  *  Y  G  E  K  E  S  Y  E  F  A  F  I  G  C  T  C  F  T  N  W  W  N  A  C  T  L  C  Y  F  L  C  T  S  W  :  L  R  R  W  *  W  W  Y  P  C  Q  R  C  *  W  Q  *  C  C  C  D  *  M  A  Q  N  S  C  T  W  N  S  N  P  H  T  R  T  K   : G  R  S  Y  L  P  C  C  G  E  R  W  N  T  R  D  L  W  Y  Q  C  C  V  H  S  P  W  L  C  R  A  V  E  Y  C  *  E  Q  V  H  L  P  L  P  W  I  S  I  Q  Q  S  R  K  S  C  *  R  T  C  S  F   : I  L  G  I  G  S  C  R  R  *  *  W  E  S  G  V  C  S  M  G  *  N  R  L  Q  N  W  *  C  S  M  V  G  L  E  I  P  S  S  F  Y  Y  *  *  Y  I  I  F  S  C  T  I  V  T  *  K  L  I  P  L  F  I  I  K  E  K  K  C  N  Y  *  N  I  T  Q  N  N  I  S  H  L  G  Y  S  S  F  C  N  C  L  L  S  F  H  F  Y  F  I  T  :  Q  K  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="9962" stop="10045"/>
                    <exon start="10202" stop="10455"/>
                    <exon start="11024" stop="11141"/>
                    <exon start="11213" stop="11395"/>
                    <exon start="12270" stop="12371"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>738</number_coding_nucleotides>
                  <number_encoded_amino_acids>246</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HPHPLPLFSTHTLINMASSTLSHVTPSQLCSSKSGISSVSQALLVKPMKINGHGMGKDNKRMKVKCMAASIPADDRVPDMEKRNLMNLLLLGALALPTGGMLVPYATFFAPPGSGGGSGGTPAKDANGNDVVVTEWLKTHAPGTRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPWNTAENKFICPCHGSQYNNQGKVVRGPAPLSLALAHADVDDGKVVFVPWVETDFRTGDAPWWA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="10198" e_stop="10455"/>
            <exon e_start="11024" e_stop="11141"/>
            <exon e_start="11213" e_stop="11395"/>
            <exon e_start="12270" e_stop="12601"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.338" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.905" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="10198" e_stop="10455" e_length="258"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.338">
            <gDNA_intron_boundary i_start="10456" i_stop="11023" i_length="568"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="11024" e_stop="11141" e_length="118"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.905">
            <gDNA_intron_boundary i_start="11142" i_stop="11212" i_length="71"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="11213" e_stop="11395" e_length="183"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="11396" i_stop="12269" i_length="874"/>
          </intron>
          <exon e_serial="4" e_score="0.991">
            <gDNA_exon_boundary e_start="12270" e_stop="12601" e_length="332"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10198" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11257"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E229223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10198" stop="10455"/>
              <exon start="11024" stop="11116"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10202" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12326"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E344790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10206" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12529"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E378188" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10206" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12382"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373996" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10213" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290755" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10214" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11284"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10214" stop="10455"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294423" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10229" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11294"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E319154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10266" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12530"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373995" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10280" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12569"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539027" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10283" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12416"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342655" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10335" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281067" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10361" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12306"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10375" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373242" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="10393" stop="10455"/>
              <exon start="11024" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11031" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239225" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11039" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12412"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291006" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11041" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253134" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11060" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286738" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11072" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12535"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E279913" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11077" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281613" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11095" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291639" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11096" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E294995" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11110" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284263" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11131" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E281651" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11137" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12601"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E292438" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11137" stop="11141"/>
              <exon start="11213" stop="11395"/>
              <exon start="12270" stop="12590"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373283" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11234" stop="11395"/>
              <exon start="12270" stop="12460"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239148" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11263" stop="11395"/>
              <exon start="12270" stop="12565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217009" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="11273" stop="11395"/>
              <exon start="12270" stop="12565"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E296587" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="12310" stop="12518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E215938" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGCCGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAGTGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTACTTTCTTTGCACCTCCTGG : CTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGCTCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAG : GGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCGCGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATGGATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTA : TCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAGTGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTAGTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAATGTAACTATTGAAACATTACCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAACAGTGGTGTCTGAATCAGTTTACACGCATATTAGTTAA</gDNA_template>
            <first_frame> S  A  M  L  K  Q  K  W  Y  F  I  G  F  T  S  L  A  C  E  A  D  E  D  *  W  S  W  N  G  K  G  *  *  E  D  E  S  E  M  Y  G  S  *  Y  S  S  R  *  *  S  A  *  Y  G  E  K  E  S  Y  E  F  A  F  I  G  C  T  C  F  T  N  W  W  N  A  C  T  L  C  Y  F  L  C  T  S  W  :  L  R  R  W  *  W  W  Y  P  C  Q  R  C  *  W  Q  *  C  C  C  D  *  M  A  Q  N  S  C  T  W  N  S  N  P  H  T  R  T  K   : G  R  S  Y  L  P  C  C  G  E  R  W  N  T  R  D  L  W  Y  Q  C  C  V  H  S  P  W  L  C  R  A  V  E  Y  C  *  E  Q  V  H  L  P  L  P  W  I  S  I  Q  Q  S  R  K  S  C  *  R  T  C  S  F   : I  L  G  I  G  S  C  R  R  *  *  W  E  S  G  V  C  S  M  G  *  N  R  L  Q  N  W  *  C  S  M  V  G  L  E  I  P  S  S  F  Y  Y  *  *  Y  I  I  F  S  C  T  I  V  T  *  K  L  I  P  L  F  I  I  K  E  K  K  C  N  Y  *  N  I  T  Q  N  N  I  S  H  L  G  Y  S  S  F  C  N  C  L  L  S  F  H  F  Y  F  I  T  V  V  S  E  S  V  Y  T  H  I  S  * </first_frame>
            <second_frame>  Q  L  C  S  S  K  S  G  I  S  S  V  S  Q  A  L  L  V  K  P  M  K  I  N  G  H  G  M  G  K  D  N  K  R  M  K  V  K  C  M  A  A  S  I  P  A  D  D  R  V  P  D  M  E  K  R  N  L  M  N  L  L  L  L  G  A  L  A  L  P  T  G  G  M  L  V  P  Y  A  T  F  F  A  P  P  G :   S  G  G  G  S  G  G  T  P  A  K  D  A  N  G  N  D  V  V  V  T  E  W  L  K  T  H  A  P  G  T  R  T  L  T  Q  G  L  K  :  G  D  P  T  Y  L  V  V  E  N  D  G  T  L  A  T  Y  G  I  N  A  V  C  T  H  L  G  C  V  V  P  W  N  T  A  E  N  K  F  I  C  P  C  H  G  S  Q  Y  N  N  Q  G  K  V  V  R  G  P  A  P  L  :  S  L  A  L  A  H  A  D  V  D  D  G  K  V  V  F  V  P  W  V  E  T  D  F  R  T  G  D  A  P  W  W  A  *  K  S  H  L  A  S  I  I  S  S  I  *  Y  S  L  V  P  L  L  H  R  S  L  F  P  F  L  L  *  R  K  K  N  V  T  I  E  T  L  P  K  I  T  F  L  I  W  D  T  V  L  F  V  I  V  Y  Y  H  F  I  F  I  L  *  Q  W  C  L  N  Q  F  T  R  I  L  V   </second_frame>
            <third_frame>   S  Y  A  Q  A  K  V  V  F  H  R  F  H  K  P  C  L  *  S  R  *  R  L  M  V  M  E  W  E  R  I  I  R  G  *  K  *  N  V  W  Q  L  V  F  Q  Q  M  I  E  C  L  I  W  R  K  G  I  L  *  I  C  F  Y  W  V  H  L  L  Y  Q  L  V  E  C  L  Y  L  M  L  L  S  L  H  L  L   : A  Q  E  V  V  V  V  V  P  L  P  K  M  L  M  A  M  M  L  L  *  L  N  G  S  K  L  M  H  L  E  L  E  P  S  H  K  D  *  R :   E  I  L  L  T  L  L  W  R  T  M  E  H  S  R  P  M  V  S  M  L  C  A  L  T  L  V  V  S  C  R  G  I  L  L  R  T  S  S  F  A  L  A  M  D  L  N  T  T  I  K  E  K  L  L  E  D  L  L  L  Y :   P  W  H  W  L  M  Q  T  L  M  M  G  K  W  C  L  F  H  G  L  K  Q  T  S  E  L  V  M  L  H  G  G  L  R  N  P  I  *  L  L  L  L  V  V  Y  N  I  L  L  Y  H  C  Y  I  E  A  Y  S  P  F  Y  Y  K  G  K  K  M  *  L  L  K  H  Y  P  K  *  H  F  S  F  G  I  Q  F  F  L  *  L  F  I  I  I  S  F  L  F  Y  N  S  G  V  *  I  S  L  H  A  Y  *  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="10199" stop="10455"/>
                    <exon start="11024" stop="11141"/>
                    <exon start="11213" stop="11395"/>
                    <exon start="12270" stop="12371"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>657</number_coding_nucleotides>
                  <number_encoded_amino_acids>219</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QLCSSKSGISSVSQALLVKPMKINGHGMGKDNKRMKVKCMAASIPADDRVPDMEKRNLMNLLLLGALALPTGGMLVPYATFFAPPGSGGGSGGTPAKDANGNDVVVTEWLKTHAPGTRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPWNTAENKFICPCHGSQYNNQGKVVRGPAPLSLALAHADVDDGKVVFVPWVETDFRTGDAPWWA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="22512" PGL_stop="14552"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22512" e_stop="22221"/>
            <exon e_start="15108" e_stop="14552"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.960" e_score="1.000"/>
          <exon-only e_score="0.982"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="22512" e_stop="22221" e_length="292"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.960">
            <gDNA_intron_boundary i_start="22220" i_stop="15109" i_length="7112"/>
          </intron>
          <exon e_serial="2" e_score="0.982">
            <gDNA_exon_boundary e_start="15108" e_stop="14552" e_length="557"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22512" stop="22221"/>
              <exon start="15108" stop="14669"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22512" stop="22221"/>
              <exon start="15108" stop="14984"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15106" stop="14552"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369458" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTCATCAAAAATTTTGTCTAACAAATTTCACTAAAACTTATGGAAAGTGTAGCTATTCTTTCCCTTCTCCTTGTTGTTGTTATTCCATATGGATTTTCTTGTGTCCAAACTTGTGAAATTCACTGCATTGAAGGTGAAAAAAATGCTCTTATAAAGTTCATCCAGGGCTTCAAGAATTCGTCACAGAACATGTTGTGGCTTGACGAAAATTGCTGTCAATGGAAAGGTGTTAAATGCGATAACAAAACAGGGCATGTGATCACTCTTGATCTGCAAAATCAATTCTTACAAG : GAGAAGTTCCACTTGGAAAACAATTTAACACCTTTGAGAATAGTTCTTATATTGGAAATCCAAACTTGTGCGGAGCTCCACTCTCACGAGTCTGCTCGGATAATATACATGAGGACATGATTGACTGTAGTATTAACAAGAATCAGGAGGTTCATGAGCAGGGAGAAAGCAACAACTGGCTCGAGGAATATTCGTTCTACACAAGCATGGTAATTGGATTCAATACAGGTTTCTTGTTGTTTTGGGTTACTCTACTGTTGAAAAAGTCATGGAGATATGCATATATGAGGTGCCTGGAAAACATGGGCAATAAGATTTATGTCTTTGCTGCCATCAGATGGAGAAAATTTCAAGCAGCAAAGACAGTGACCAATTGTCCAAATTGAGCTGCTGATTCTCTTTACTTTTCTATCTTTTCTTTTATAATATCGTGTTTTCTACTTCCTACTTGTTGTTTTAAATATAATGTTTGTTTTTATCGGCACTTATATTTTATTGTAATGTTTTTTGTTATGAAGTAACGAAATTGATTTGGTGTAATTGCACAATTACTTGAA</gDNA_template>
            <first_frame> F  I  K  N  F  V  *  Q  I  S  L  K  L  M  E  S  V  A  I  L  S  L  L  L  V  V  V  I  P  Y  G  F  S  C  V  Q  T  C  E  I  H  C  I  E  G  E  K  N  A  L  I  K  F  I  Q  G  F  K  N  S  S  Q  N  M  L  W  L  D  E  N  C  C  Q  W  K  G  V  K  C  D  N  K  T  G  H  V  I  T  L  D  L  Q  N  Q  F  L  Q   : G  E  V  P  L  G  K  Q  F  N  T  F  E  N  S  S  Y  I  G  N  P  N  L  C  G  A  P  L  S  R  V  C  S  D  N  I  H  E  D  M  I  D  C  S  I  N  K  N  Q  E  V  H  E  Q  G  E  S  N  N  W  L  E  E  Y  S  F  Y  T  S  M  V  I  G  F  N  T  G  F  L  L  F  W  V  T  L  L  L  K  K  S  W  R  Y  A  Y  M  R  C  L  E  N  M  G  N  K  I  Y  V  F  A  A  I  R  W  R  K  F  Q  A  A  K  T  V  T  N  C  P  N  *  A  A  D  S  L  Y  F  S  I  F  S  F  I  I  S  C  F  L  L  P  T  C  C  F  K  Y  N  V  C  F  Y  R  H  L  Y  F  I  V  M  F  F  V  M  K  *  R  N  *  F  G  V  I  A  Q  L  L  E </first_frame>
            <second_frame>  S  S  K  I  L  S  N  K  F  H  *  N  L  W  K  V  *  L  F  F  P  F  S  L  L  L  L  F  H  M  D  F  L  V  S  K  L  V  K  F  T  A  L  K  V  K  K  M  L  L  *  S  S  S  R  A  S  R  I  R  H  R  T  C  C  G  L  T  K  I  A  V  N  G  K  V  L  N  A  I  T  K  Q  G  M  *  S  L  L  I  C  K  I  N  S  Y  K  :  E  K  F  H  L  E  N  N  L  T  P  L  R  I  V  L  I  L  E  I  Q  T  C  A  E  L  H  S  H  E  S  A  R  I  I  Y  M  R  T  *  L  T  V  V  L  T  R  I  R  R  F  M  S  R  E  K  A  T  T  G  S  R  N  I  R  S  T  Q  A  W  *  L  D  S  I  Q  V  S  C  C  F  G  L  L  Y  C  *  K  S  H  G  D  M  H  I  *  G  A  W  K  T  W  A  I  R  F  M  S  L  L  P  S  D  G  E  N  F  K  Q  Q  R  Q  *  P  I  V  Q  I  E  L  L  I  L  F  T  F  L  S  F  L  L  *  Y  R  V  F  Y  F  L  L  V  V  L  N  I  M  F  V  F  I  G  T  Y  I  L  L  *  C  F  L  L  *  S  N  E  I  D  L  V  *  L  H  N  Y  L   </second_frame>
            <third_frame>   H  Q  K  F  C  L  T  N  F  T  K  T  Y  G  K  C  S  Y  S  F  P  S  P  C  C  C  Y  S  I  W  I  F  L  C  P  N  L  *  N  S  L  H  *  R  *  K  K  C  S  Y  K  V  H  P  G  L  Q  E  F  V  T  E  H  V  V  A  *  R  K  L  L  S  M  E  R  C  *  M  R  *  Q  N  R  A  C  D  H  S  *  S  A  K  S  I  L  T  R :   R  S  S  T  W  K  T  I  *  H  L  *  E  *  F  L  Y  W  K  S  K  L  V  R  S  S  T  L  T  S  L  L  G  *  Y  T  *  G  H  D  *  L  *  Y  *  Q  E  S  G  G  S  *  A  G  R  K  Q  Q  L  A  R  G  I  F  V  L  H  K  H  G  N  W  I  Q  Y  R  F  L  V  V  L  G  Y  S  T  V  E  K  V  M  E  I  C  I  Y  E  V  P  G  K  H  G  Q  *  D  L  C  L  C  C  H  Q  M  E  K  I  S  S  S  K  D  S  D  Q  L  S  K  L  S  C  *  F  S  L  L  F  Y  L  F  F  Y  N  I  V  F  S  T  S  Y  L  L  F  *  I  *  C  L  F  L  S  A  L  I  F  Y  C  N  V  F  C  Y  E  V  T  K  L  I  W  C  N  C  T  I  T  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22491" stop="22221"/>
                    <exon start="15108" stop="14723"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QISLKLMESVAILSLLLVVVIPYGFSCVQTCEIHCIEGEKNALIKFIQGFKNSSQNMLWLDENCCQWKGVKCDNKTGHVITLDLQNQFLQGEVPLGKQFNTFENSSYIGNPNLCGAPLSRVCSDNIHEDMIDCSINKNQEVHEQGESNNWLEEYSFYTSMVIGFNTGFLLFWVTLLLKKSWRYAYMRCLENMGNKIYVFAAIRWRKFQAAKTVTNCPN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="18926" PGL_stop="19353"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18926" e_stop="19353"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.928">
            <gDNA_exon_boundary e_start="18926" e_stop="19353" e_length="428"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18926" stop="19353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E217990" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGGGGAAATTGTGTTAAAACTGCAGCTTATCTGATAAACAGAATGCCTACAACTGTATTACAAGGGAAGTCACCATATGAACTTCTTTATAAACGAGCACCTAATCTAGAACATTTGAGGGTGTTTGGATGTTTATGTTTTGTATCAGTTTTGCCAAGAAGAGATAAATTTGCTCCAAGAGCAACAAGATCAGTCTTCATTGGGTACTCAGAGACACAAAAAGGATATAAAGTCATGGATTTGGAGACTCATGTCATATCAGTGAGCAGGGAGGTTACATTCATGGAAGATTCATTTCCTTTCAAAGATGTTATCACAAAAGAAGTATCATCAACCACAGATTATACTGCTCCTATACAAATGGATATGTTTGATCATGCAGATGATAATATACCTTCAAATCCTGTAGATTCTATTGAAGATCAT</gDNA_template>
            <first_frame> F  G  E  I  V  L  K  L  Q  L  I  *  *  T  E  C  L  Q  L  Y  Y  K  G  S  H  H  M  N  F  F  I  N  E  H  L  I  *  N  I  *  G  C  L  D  V  Y  V  L  Y  Q  F  C  Q  E  E  I  N  L  L  Q  E  Q  Q  D  Q  S  S  L  G  T  Q  R  H  K  K  D  I  K  S  W  I  W  R  L  M  S  Y  Q  *  A  G  R  L  H  S  W  K  I  H  F  L  S  K  M  L  S  Q  K  K  Y  H  Q  P  Q  I  I  L  L  L  Y  K  W  I  C  L  I  M  Q  M  I  I  Y  L  Q  I  L  *  I  L  L  K  I   </first_frame>
            <second_frame>  L  G  K  L  C  *  N  C  S  L  S  D  K  Q  N  A  Y  N  C  I  T  R  E  V  T  I  *  T  S  L  *  T  S  T  *  S  R  T  F  E  G  V  W  M  F  M  F  C  I  S  F  A  K  K  R  *  I  C  S  K  S  N  K  I  S  L  H  W  V  L  R  D  T  K  R  I  *  S  H  G  F  G  D  S  C  H  I  S  E  Q  G  G  Y  I  H  G  R  F  I  S  F  Q  R  C  Y  H  K  R  S  I  I  N  H  R  L  Y  C  S  Y  T  N  G  Y  V  *  S  C  R  *  *  Y  T  F  K  S  C  R  F  Y  *  R  S  </second_frame>
            <third_frame>   W  G  N  C  V  K  T  A  A  Y  L  I  N  R  M  P  T  T  V  L  Q  G  K  S  P  Y  E  L  L  Y  K  R  A  P  N  L  E  H  L  R  V  F  G  C  L  C  F  V  S  V  L  P  R  R  D  K  F  A  P  R  A  T  R  S  V  F  I  G  Y  S  E  T  Q  K  G  Y  K  V  M  D  L  E  T  H  V  I  S  V  S  R  E  V  T  F  M  E  D  S  F  P  F  K  D  V  I  T  K  E  V  S  S  T  T  D  Y  T  A  P  I  Q  M  D  M  F  D  H  A  D  D  N  I  P  S  N  P  V  D  S  I  E  D  H </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18928" stop="19353"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>426</number_coding_nucleotides>
                  <number_encoded_amino_acids>142</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WGNCVKTAAYLINRMPTTVLQGKSPYELLYKRAPNLEHLRVFGCLCFVSVLPRRDKFAPRATRSVFIGYSETQKGYKVMDLETHVISVSREVTFMEDSFPFKDVITKEVSSTTDYTAPIQMDMFDHADDNIPSNPVDSIEDH</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="33228" PGL_stop="32692"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33228" e_stop="32692"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.991"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.991">
            <gDNA_exon_boundary e_start="33228" e_stop="32692" e_length="537"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33228" stop="32692"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284160" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATGATAAAGGGGATTAAGAACTTCAAAATCTACCATTATGTAATTAAAATATTTATATTCAATCAAATTTTAATTTAGTAAAGGGACAAAATGACAATTCGACTTTTCACTTGTAATAATATATGATCTCTGCAGCAAAACTTCTTCCTTGGAGCAAATGAACAATGTAGTGGGGAATGAATTAACTCAGCAGGCTTCCAAAGCAGCAGATGCGTACTACTTTTCAGTTTTTTGTTCTTGACTAATCCTTGCTAACCCACCTTTGACCACGAACTTGAATAGCACCAAAGTTCTGATCACTGCTACTTTCTCCACCACTTTCTGCACTCGTATATTCAGATTTTCGACGGTGCTTCTTCTTCGTAGAAGTTCCACTATCGCTTACGCTTCCGTTCAAAAGAGGATCATCGATCCCACGTATGACTCTTCTTGTTGGAGATGATGAGGCAACACCACTATCGTCCTTTGTTTTTCTCCCTTTGTCATGCTTCTTTATGTTCTGAGAGATTTCATGTAATTTTTGTATTCCTTTCTCTA</gDNA_template>
            <first_frame> M  I  K  G  I  K  N  F  K  I  Y  H  Y  V  I  K  I  F  I  F  N  Q  I  L  I  *  *  R  D  K  M  T  I  R  L  F  T  C  N  N  I  *  S  L  Q  Q  N  F  F  L  G  A  N  E  Q  C  S  G  E  *  I  N  S  A  G  F  Q  S  S  R  C  V  L  L  F  S  F  L  F  L  T  N  P  C  *  P  T  F  D  H  E  L  E  *  H  Q  S  S  D  H  C  Y  F  L  H  H  F  L  H  S  Y  I  Q  I  F  D  G  A  S  S  S  *  K  F  H  Y  R  L  R  F  R  S  K  E  D  H  R  S  H  V  *  L  F  L  L  E  M  M  R  Q  H  H  Y  R  P  L  F  F  S  L  C  H  A  S  L  C  S  E  R  F  H  V  I  F  V  F  L  S  L </first_frame>
            <second_frame>  *  *  R  G  L  R  T  S  K  S  T  I  M  *  L  K  Y  L  Y  S  I  K  F  *  F  S  K  G  T  K  *  Q  F  D  F  S  L  V  I  I  Y  D  L  C  S  K  T  S  S  L  E  Q  M  N  N  V  V  G  N  E  L  T  Q  Q  A  S  K  A  A  D  A  Y  Y  F  S  V  F  C  S  *  L  I  L  A  N  P  P  L  T  T  N  L  N  S  T  K  V  L  I  T  A  T  F  S  T  T  F  C  T  R  I  F  R  F  S  T  V  L  L  L  R  R  S  S  T  I  A  Y  A  S  V  Q  K  R  I  I  D  P  T  Y  D  S  S  C  W  R  *  *  G  N  T  T  I  V  L  C  F  S  P  F  V  M  L  L  Y  V  L  R  D  F  M  *  F  L  Y  S  F  L   </second_frame>
            <third_frame>   D  K  G  D  *  E  L  Q  N  L  P  L  C  N  *  N  I  Y  I  Q  S  N  F  N  L  V  K  G  Q  N  D  N  S  T  F  H  L  *  *  Y  M  I  S  A  A  K  L  L  P  W  S  K  *  T  M  *  W  G  M  N  *  L  S  R  L  P  K  Q  Q  M  R  T  T  F  Q  F  F  V  L  D  *  S  L  L  T  H  L  *  P  R  T  *  I  A  P  K  F  *  S  L  L  L  S  P  P  L  S  A  L  V  Y  S  D  F  R  R  C  F  F  F  V  E  V  P  L  S  L  T  L  P  F  K  R  G  S  S  I  P  R  M  T  L  L  V  G  D  D  E  A  T  P  L  S  S  F  V  F  L  P  L  S  C  F  F  M  F  *  E  I  S  C  N  F  C  I  P  F  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32932" stop="32726"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLLLSPPLSALVYSDFRRCFFFVEVPLSLTLPFKRGSSIPRMTLLVGDDEATPLSSFVFLPLSCFFMF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="32987" stop="32787"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LILANPPLTTNLNSTKVLITATFSTTFCTRIFRFSTVLLLRRSSTIAYASVQKRIIDPTYDSSCWR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="32808" PGL_stop="33214"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="32808" e_stop="33214"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="32808" e_stop="33214" e_length="407"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32808" stop="33214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E218177" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="32843" stop="33214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E227422" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATACGTGGGATCGATGATCCTCTTTTGAACGGAAGCGTAAGCGATAGTGGAACTTCTACGAAGAAGAAGCACCGTCGAAAATCTGAATATACGAGTGCAGAAAGTGGTGGAGAAAGTAGCAGTGATCAGAACTTTGGTGCTATTCAAGTTCGTGGTCAAAGGTGGGTTAGCAAGGATTAGTCAAGAACAAAAAACTGAAAAGTAGTACGCATCTGCTGCTTTGGAAGCCTGCTGAGTTAATTCATTCCCCACTACATTGTTCATTTGCTCCAAGGAAGAAGTTTTGCTGCAGAGATCATATATTATTACAAGTGAAAAGTCGAATTGTCATTTTGTCCCTTTACTAAATTAAAATTTGATTGAATATAAATATTTTAATTACATAATGGTAGATTTTGAAGTTCTTA</gDNA_template>
            <first_frame> I  R  G  I  D  D  P  L  L  N  G  S  V  S  D  S  G  T  S  T  K  K  K  H  R  R  K  S  E  Y  T  S  A  E  S  G  G  E  S  S  S  D  Q  N  F  G  A  I  Q  V  R  G  Q  R  W  V  S  K  D  *  S  R  T  K  N  *  K  V  V  R  I  C  C  F  G  S  L  L  S  *  F  I  P  H  Y  I  V  H  L  L  Q  G  R  S  F  A  A  E  I  I  Y  Y  Y  K  *  K  V  E  L  S  F  C  P  F  T  K  L  K  F  D  *  I  *  I  F  *  L  H  N  G  R  F  *  S  S   </first_frame>
            <second_frame>  Y  V  G  S  M  I  L  F  *  T  E  A  *  A  I  V  E  L  L  R  R  R  S  T  V  E  N  L  N  I  R  V  Q  K  V  V  E  K  V  A  V  I  R  T  L  V  L  F  K  F  V  V  K  G  G  L  A  R  I  S  Q  E  Q  K  T  E  K  *  Y  A  S  A  A  L  E  A  C  *  V  N  S  F  P  T  T  L  F  I  C  S  K  E  E  V  L  L  Q  R  S  Y  I  I  T  S  E  K  S  N  C  H  F  V  P  L  L  N  *  N  L  I  E  Y  K  Y  F  N  Y  I  M  V  D  F  E  V  L  </second_frame>
            <third_frame>   T  W  D  R  *  S  S  F  E  R  K  R  K  R  *  W  N  F  Y  E  E  E  A  P  S  K  I  *  I  Y  E  C  R  K  W  W  R  K  *  Q  *  S  E  L  W  C  Y  S  S  S  W  S  K  V  G  *  Q  G  L  V  K  N  K  K  L  K  S  S  T  H  L  L  L  W  K  P  A  E  L  I  H  S  P  L  H  C  S  F  A  P  R  K  K  F  C  C  R  D  H  I  L  L  Q  V  K  S  R  I  V  I  L  S  L  Y  *  I  K  I  *  L  N  I  N  I  L  I  T  *  W  *  I  L  K  F  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0140M01.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="34004" PGL_stop="35404"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34004" e_stop="34826"/>
            <exon e_start="34912" e_stop="35404"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.999" e_score="0.975"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.975">
            <gDNA_exon_boundary e_start="34004" e_stop="34826" e_length="823"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.999">
            <gDNA_intron_boundary i_start="34827" i_stop="34911" i_length="85"/>
          </intron>
          <exon e_serial="2" e_score="0.980">
            <gDNA_exon_boundary e_start="34912" e_stop="35404" e_length="493"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34004" stop="34736"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547361" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34521" stop="34826"/>
              <exon start="34912" stop="35404"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E547360" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCCTCTCATTCATCGTCTCGTTAATGAAGAGAGAAGGTTTAGACAAGGGCGCGACGTTTTCCCTTTAATAACAATAACAATACCTGTTTTTTCGTTGACTATCAACCTATCACAACCCTCCTCCGTGGGATAAACAACAATTTATGTTGAGGATAGGTACATAACAAGACTAATTTGTCCATTGAGAAAAAAAGGAGGGGAAATTGAAAAATCAACCAAAAATGAATGACTTATTCTCTAATTCGTTTAAAAAGTATCAGGACCTTAAAAAACAGACCGAAGTAGATGATTTGGAGGGTGGTCAAGATGGCCAACCAGGTACTGAAAGTATTGATCTTGCTAAATTCTTTGAAGATGTAGAAAATGTGAAAGAAGATATGAAAGATGTCGAAAAATTTCATAAGAAATTACAAGAATCAAATGAAGAGAGCAAACTTGTGCATAATGCCAAGACTGTGAAAGAAATAAGGTCTAGGATGGATTCAGATGTGTCACAGGTCTTAAAACGCGTTAAGATGATCAAAGGAAAATTGGAAGCCCTCGAACGATCCAATGCAGCTCATAGGAAGATCTCGGGGTGTGGACCAGGTTCTTCTGCAGATCGAACAAGGACTTCTGTAGTTAGTGGTTTAGGAAAGAAATTAAAAGTACTCATGGATGATTTTCAAGGATTGAGGACAAGAATGAATGATGAATATAAGGAAACAGTTGCAAGAAGGTACTTTACTGTGACAGGAGAGAAAGCTGACGATGGGTTAATTGAGAATTTGATATCAAGTGGGGAGAGCGAGTCTTTCCTCCAAAAGGCAATCCAGGAACAAG : GTAGGGGTCAGATTATGGACACAATTTCCGAAATACAAGAAAGACATGATGCTGTGAAAGAGATTGAGAAGAATTTGATTGAGCTACACCAAATATTTTTAGACATGGCTGCATTGGTGGAAGCACAAGGGCAACAATTAAATGATATTGAAAGTCATGTGGCACATGCAAGTTCCTTTGTTAGGAGGGGCACAGAGCAATTACAAGAAGCTAGGGAGATTCAAAAAAGTTCAAGAAAGTGTGCTTGTTTTGCTGTTTTCCTCATCATTTTGCTTATCATTCTTCTTACTTTCCCACTATGGTGGCCATTAGTTGCTAGCAAAATATTATAAGATGACCTTTTTTTTCTTGGGCAATATGACTATTGTTTGTAAGAATTTTATTCTTGTATTCATTGTCAACAATTTGTTTTCTTTGACATTGTATTTATAGAAGCAATTTTTGTCACATCAATGGTTACATATATAGACATGTTTCAAGACACCTATGTATT</gDNA_template>
            <first_frame> L  L  S  F  I  V  S  L  M  K  R  E  G  L  D  K  G  A  T  F  S  L  *  *  Q  *  Q  Y  L  F  F  R  *  L  S  T  Y  H  N  P  P  P  W  D  K  Q  Q  F  M  L  R  I  G  T  *  Q  D  *  F  V  H  *  E  K  K  E  G  K  L  K  N  Q  P  K  M  N  D  L  F  S  N  S  F  K  K  Y  Q  D  L  K  K  Q  T  E  V  D  D  L  E  G  G  Q  D  G  Q  P  G  T  E  S  I  D  L  A  K  F  F  E  D  V  E  N  V  K  E  D  M  K  D  V  E  K  F  H  K  K  L  Q  E  S  N  E  E  S  K  L  V  H  N  A  K  T  V  K  E  I  R  S  R  M  D  S  D  V  S  Q  V  L  K  R  V  K  M  I  K  G  K  L  E  A  L  E  R  S  N  A  A  H  R  K  I  S  G  C  G  P  G  S  S  A  D  R  T  R  T  S  V  V  S  G  L  G  K  K  L  K  V  L  M  D  D  F  Q  G  L  R  T  R  M  N  D  E  Y  K  E  T  V  A  R  R  Y  F  T  V  T  G  E  K  A  D  D  G  L  I  E  N  L  I  S  S  G  E  S  E  S  F  L  Q  K  A  I  Q  E  Q   : G  R  G  Q  I  M  D  T  I  S  E  I  Q  E  R  H  D  A  V  K  E  I  E  K  N  L  I  E  L  H  Q  I  F  L  D  M  A  A  L  V  E  A  Q  G  Q  Q  L  N  D  I  E  S  H  V  A  H  A  S  S  F  V  R  R  G  T  E  Q  L  Q  E  A  R  E  I  Q  K  S  S  R  K  C  A  C  F  A  V  F  L  I  I  L  L  I  I  L  L  T  F  P  L  W  W  P  L  V  A  S  K  I  L  *  D  D  L  F  F  L  G  Q  Y  D  Y  C  L  *  E  F  Y  S  C  I  H  C  Q  Q  F  V  F  F  D  I  V  F  I  E  A  I  F  V  T  S  M  V  T  Y  I  D  M  F  Q  D  T  Y  V   </first_frame>
            <second_frame>  S  S  H  S  S  S  R  *  *  R  E  K  V  *  T  R  A  R  R  F  P  F  N  N  N  N  N  T  C  F  F  V  D  Y  Q  P  I  T  T  L  L  R  G  I  N  N  N  L  C  *  G  *  V  H  N  K  T  N  L  S  I  E  K  K  R  R  G  N  *  K  I  N  Q  K  *  M  T  Y  S  L  I  R  L  K  S  I  R  T  L  K  N  R  P  K  *  M  I  W  R  V  V  K  M  A  N  Q  V  L  K  V  L  I  L  L  N  S  L  K  M  *  K  M  *  K  K  I  *  K  M  S  K  N  F  I  R  N  Y  K  N  Q  M  K  R  A  N  L  C  I  M  P  R  L  *  K  K  *  G  L  G  W  I  Q  M  C  H  R  S  *  N  A  L  R  *  S  K  E  N  W  K  P  S  N  D  P  M  Q  L  I  G  R  S  R  G  V  D  Q  V  L  L  Q  I  E  Q  G  L  L  *  L  V  V  *  E  R  N  *  K  Y  S  W  M  I  F  K  D  *  G  Q  E  *  M  M  N  I  R  K  Q  L  Q  E  G  T  L  L  *  Q  E  R  K  L  T  M  G  *  L  R  I  *  Y  Q  V  G  R  A  S  L  S  S  K  R  Q  S  R  N  K  :  V  G  V  R  L  W  T  Q  F  P  K  Y  K  K  D  M  M  L  *  K  R  L  R  R  I  *  L  S  Y  T  K  Y  F  *  T  W  L  H  W  W  K  H  K  G  N  N  *  M  I  L  K  V  M  W  H  M  Q  V  P  L  L  G  G  A  Q  S  N  Y  K  K  L  G  R  F  K  K  V  Q  E  S  V  L  V  L  L  F  S  S  S  F  C  L  S  F  F  L  L  S  H  Y  G  G  H  *  L  L  A  K  Y  Y  K  M  T  F  F  F  L  G  N  M  T  I  V  C  K  N  F  I  L  V  F  I  V  N  N  L  F  S  L  T  L  Y  L  *  K  Q  F  L  S  H  Q  W  L  H  I  *  T  C  F  K  T  P  M  Y  </second_frame>
            <third_frame>   P  L  I  H  R  L  V  N  E  E  R  R  F  R  Q  G  R  D  V  F  P  L  I  T  I  T  I  P  V  F  S  L  T  I  N  L  S  Q  P  S  S  V  G  *  T  T  I  Y  V  E  D  R  Y  I  T  R  L  I  C  P  L  R  K  K  G  G  E  I  E  K  S  T  K  N  E  *  L  I  L  *  F  V  *  K  V  S  G  P  *  K  T  D  R  S  R  *  F  G  G  W  S  R  W  P  T  R  Y  *  K  Y  *  S  C  *  I  L  *  R  C  R  K  C  E  R  R  Y  E  R  C  R  K  I  S  *  E  I  T  R  I  K  *  R  E  Q  T  C  A  *  C  Q  D  C  E  R  N  K  V  *  D  G  F  R  C  V  T  G  L  K  T  R  *  D  D  Q  R  K  I  G  S  P  R  T  I  Q  C  S  S  *  E  D  L  G  V  W  T  R  F  F  C  R  S  N  K  D  F  C  S  *  W  F  R  K  E  I  K  S  T  H  G  *  F  S  R  I  E  D  K  N  E  *  *  I  *  G  N  S  C  K  K  V  L  Y  C  D  R  R  E  S  *  R  W  V  N  *  E  F  D  I  K  W  G  E  R  V  F  P  P  K  G  N  P  G  T  R :   *  G  S  D  Y  G  H  N  F  R  N  T  R  K  T  *  C  C  E  R  D  *  E  E  F  D  *  A  T  P  N  I  F  R  H  G  C  I  G  G  S  T  R  A  T  I  K  *  Y  *  K  S  C  G  T  C  K  F  L  C  *  E  G  H  R  A  I  T  R  S  *  G  D  S  K  K  F  K  K  V  C  L  F  C  C  F  P  H  H  F  A  Y  H  S  S  Y  F  P  T  M  V  A  I  S  C  *  Q  N  I  I  R  *  P  F  F  S  W  A  I  *  L  L  F  V  R  I  L  F  L  Y  S  L  S  T  I  C  F  L  *  H  C  I  Y  R  S  N  F  C  H  I  N  G  Y  I  Y  R  H  V  S  R  H  L  C  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34190" stop="34826"/>
                    <exon start="34912" stop="35243"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>966</number_coding_nucleotides>
                  <number_encoded_amino_acids>322</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKKEGKLKNQPKMNDLFSNSFKKYQDLKKQTEVDDLEGGQDGQPGTESIDLAKFFEDVENVKEDMKDVEKFHKKLQESNEESKLVHNAKTVKEIRSRMDSDVSQVLKRVKMIKGKLEALERSNAAHRKISGCGPGSSADRTRTSVVSGLGKKLKVLMDDFQGLRTRMNDEYKETVARRYFTVTGEKADDGLIENLISSGESESFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQIFLDMAALVEAQGQQLNDIESHVAHASSFVRRGTEQLQEAREIQKSSRKCACFAVFLIILLIILLTFPLWWPLVASKIL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="36542" PGL_stop="39972"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="36542" e_stop="36671"/>
            <exon e_start="36832" e_stop="36902"/>
            <exon e_start="38269" e_stop="38355"/>
            <exon e_start="39539" e_stop="39972"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.887" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="36542" e_stop="36671" e_length="130"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="36672" i_stop="36831" i_length="160"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="36832" e_stop="36902" e_length="71"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.975">
            <gDNA_intron_boundary i_start="36903" i_stop="38268" i_length="1366"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="38269" e_stop="38355" e_length="87"/>
          </exon>
          <intron i_serial="3" don_prob="0.887" acc_prob="0.995">
            <gDNA_intron_boundary i_start="38356" i_stop="39538" i_length="1183"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="39539" e_stop="39972" e_length="434"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36542" stop="36671"/>
              <exon start="36832" stop="36867"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36568" stop="36671"/>
              <exon start="36832" stop="36902"/>
              <exon start="38269" stop="38355"/>
              <exon start="39539" stop="39798"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E306432" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36576" stop="36671"/>
              <exon start="36832" stop="36902"/>
              <exon start="38269" stop="38355"/>
              <exon start="39539" stop="39972"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540192" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36576" stop="36671"/>
              <exon start="36832" stop="36902"/>
              <exon start="38269" stop="38355"/>
              <exon start="39539" stop="39958"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E540189" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="36577" stop="36671"/>
              <exon start="36832" stop="36902"/>
              <exon start="38269" stop="38355"/>
              <exon start="39539" stop="39918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286457" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCACTTCTCAGAACAAAGCTATGGCTACCTCGTTGACAATGGCGGCTCGTCGAGCGGCAGCCTTCACTCGAATCCCCTCCTCAACCACTGCGTCTCTTGTTCAGCGCCGCGGCCTTGCCGGCGCAGCTG : ATCATCATGGGCCTCCTAAGGTCAATTGCTGGAAAGAACCGATGAATCCTGGTCAATGGAAGGAAGAACAT : TTTGTGATTGCATCTTTGTCCGGTTGGGGCTTGCTTTTCTTTGGTGCATACAAGTTATTCTCTGGAGGCAAGAAGAACAAAGAAGAG : AACTTGGTGCAAGCATCACAATAAGGTGGGTATTTACGTGGCATCATACTGAGGTTGGGATAATCCAAGTCCATAATCGAGAAGTTCTCTCTAATAATACAACTTATTGGACATTCATTTTTCATTTGATGGATTTTCTTATCATTATAAAATTACCAGAGAGCCTGTGAGCTACTAAATGGTGGACAAAAGTTGGTTGCATCAATACTGCAATATACTTTTTCTTTTGTATACTATGATAAATGAAACTGGTTTTTGTCAGTTTGCTTTCTAAGGTTCATTGTCATCTTGATCAGTTGTGTGGAAATTGTATTCACATTAATCTGAAGATCCGCGCACCATAATTTGTAGAAGCTCTGCACATGCAGTAAGTCTCAATGCCACTGAGAGTTGTGTTAATGAAGATGTCATCAAACAATTGTGTATTTCAAACT</gDNA_template>
            <first_frame> L  T  S  Q  N  K  A  M  A  T  S  L  T  M  A  A  R  R  A  A  A  F  T  R  I  P  S  S  T  T  A  S  L  V  Q  R  R  G  L  A  G  A  A   : D  H  H  G  P  P  K  V  N  C  W  K  E  P  M  N  P  G  Q  W  K  E  E  H  :  F  V  I  A  S  L  S  G  W  G  L  L  F  F  G  A  Y  K  L  F  S  G  G  K  K  N  K  E  E  :  N  L  V  Q  A  S  Q  *  G  G  Y  L  R  G  I  I  L  R  L  G  *  S  K  S  I  I  E  K  F  S  L  I  I  Q  L  I  G  H  S  F  F  I  *  W  I  F  L  S  L  *  N  Y  Q  R  A  C  E  L  L  N  G  G  Q  K  L  V  A  S  I  L  Q  Y  T  F  S  F  V  Y  Y  D  K  *  N  W  F  L  S  V  C  F  L  R  F  I  V  I  L  I  S  C  V  E  I  V  F  T  L  I  *  R  S  A  H  H  N  L  *  K  L  C  T  C  S  K  S  Q  C  H  *  E  L  C  *  *  R  C  H  Q  T  I  V  Y  F  K   </first_frame>
            <second_frame>  S  L  L  R  T  K  L  W  L  P  R  *  Q  W  R  L  V  E  R  Q  P  S  L  E  S  P  P  Q  P  L  R  L  L  F  S  A  A  A  L  P  A  Q  L  :  I  I  M  G  L  L  R  S  I  A  G  K  N  R  *  I  L  V  N  G  R  K  N  I :   L  *  L  H  L  C  P  V  G  A  C  F  S  L  V  H  T  S  Y  S  L  E  A  R  R  T  K  K  R :   T  W  C  K  H  H  N  K  V  G  I  Y  V  A  S  Y  *  G  W  D  N  P  S  P  *  S  R  S  S  L  *  *  Y  N  L  L  D  I  H  F  S  F  D  G  F  S  Y  H  Y  K  I  T  R  E  P  V  S  Y  *  M  V  D  K  S  W  L  H  Q  Y  C  N  I  L  F  L  L  Y  T  M  I  N  E  T  G  F  C  Q  F  A  F  *  G  S  L  S  S  *  S  V  V  W  K  L  Y  S  H  *  S  E  D  P  R  T  I  I  C  R  S  S  A  H  A  V  S  L  N  A  T  E  S  C  V  N  E  D  V  I  K  Q  L  C  I  S  N  </second_frame>
            <third_frame>   H  F  S  E  Q  S  Y  G  Y  L  V  D  N  G  G  S  S  S  G  S  L  H  S  N  P  L  L  N  H  C  V  S  C  S  A  P  R  P  C  R  R  S  * :   S  S  W  A  S  *  G  Q  L  L  E  R  T  D  E  S  W  S  M  E  G  R  T   : F  C  D  C  I  F  V  R  L  G  L  A  F  L  W  C  I  Q  V  I  L  W  R  Q  E  E  Q  R  R   : E  L  G  A  S  I  T  I  R  W  V  F  T  W  H  H  T  E  V  G  I  I  Q  V  H  N  R  E  V  L  S  N  N  T  T  Y  W  T  F  I  F  H  L  M  D  F  L  I  I  I  K  L  P  E  S  L  *  A  T  K  W  W  T  K  V  G  C  I  N  T  A  I  Y  F  F  F  C  I  L  *  *  M  K  L  V  F  V  S  L  L  S  K  V  H  C  H  L  D  Q  L  C  G  N  C  I  H  I  N  L  K  I  R  A  P  *  F  V  E  A  L  H  M  Q  *  V  S  M  P  L  R  V  V  L  M  K  M  S  S  N  N  C  V  F  Q  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36542" stop="36671"/>
                    <exon start="36832" stop="36902"/>
                    <exon start="38269" stop="38355"/>
                    <exon start="39539" stop="39562"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LTSQNKAMATSLTMAARRAAAFTRIPSSTTASLVQRRGLAGAADHHGPPKVNCWKEPMNPGQWKEEHFVIASLSGWGLLFFGAYKLFSGGKKNKEENLVQASQ*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="36851" stop="36902"/>
                    <exon start="38269" stop="38355"/>
                    <exon start="39539" stop="39708"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GQLLERTDESWSMEGRTFCDCIFVRLGLAFLWCIQVILWRQEEQRRELGASITIRWVFTWHHTEVGIIQVHNREVLSNNTTYWTFIFHLMDFLIIIKLPESL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="55425" PGL_stop="56830"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55425" e_stop="55581"/>
            <exon e_start="56103" e_stop="56193"/>
            <exon e_start="56369" e_stop="56459"/>
            <exon e_start="56551" e_stop="56581"/>
            <exon e_start="56669" e_stop="56830"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.981" e_score="0.987"/>
          <exon-intron don_prob="0.997" acc_prob="0.982" e_score="0.978"/>
          <exon-intron don_prob="0.022" acc_prob="0.994" e_score="0.989"/>
          <exon-intron don_prob="0.991" acc_prob="0.713" e_score="1.000"/>
          <exon-only e_score="0.969"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.987">
            <gDNA_exon_boundary e_start="55425" e_stop="55581" e_length="157"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.981">
            <gDNA_intron_boundary i_start="55582" i_stop="56102" i_length="521"/>
          </intron>
          <exon e_serial="2" e_score="0.978">
            <gDNA_exon_boundary e_start="56103" e_stop="56193" e_length="91"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.982">
            <gDNA_intron_boundary i_start="56194" i_stop="56368" i_length="175"/>
          </intron>
          <exon e_serial="3" e_score="0.989">
            <gDNA_exon_boundary e_start="56369" e_stop="56459" e_length="91"/>
          </exon>
          <intron i_serial="3" don_prob="0.022" acc_prob="0.994">
            <gDNA_intron_boundary i_start="56460" i_stop="56550" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="56551" e_stop="56581" e_length="31"/>
          </exon>
          <intron i_serial="4" don_prob="0.991" acc_prob="0.713">
            <gDNA_intron_boundary i_start="56582" i_stop="56668" i_length="87"/>
          </intron>
          <exon e_serial="5" e_score="0.969">
            <gDNA_exon_boundary e_start="56669" e_stop="56830" e_length="162"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55425" stop="55581"/>
              <exon start="56103" stop="56193"/>
              <exon start="56369" stop="56459"/>
              <exon start="56551" stop="56581"/>
              <exon start="56669" stop="56830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330914" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTCTCTGTAAAATGTATGAACACAACTCTTTCGTAATCGACCAGGCGTACGAGTTCTCAGCGCCAAGATTTTATGACTTTGTTGATGAAGAAACAGAAGAGGAAACACAGAAAGCTGAGCATTGGTTCCACATTTCAAGAAGCTATGCTCCTTCTC : CTTTTATGCCAAAAATTAAAACTGGTAGAATGGTTCAACTTGAGAGCCTATGTGACTTCACTGATGCTGAGGAGTTGCAAGATAACACAAG : GCCTGCTACTGAGCTCACTTCTTCTAAAAGTAAAGACGAGGTAACGCCATATTTAATTGTACCAGAACCTTGCACCAGTCTTCCTAATCCG : GAATCTGAAGAGAAGCAGTCTATTGTTCAAG : AAACTTGCACACCCGGACCAACAATAACATCTCAGAAGAGCGACTCTCGGAAGACTAATTCCAAGAGGCAACAAACTGCTAAAAAGATTGCAAGCATACTTAGAAACCCTTCAGCATTAAAGTCAAAAACTCAACAACAACAGTCGCATCTGAGTAGTTCTA</gDNA_template>
            <first_frame> S  L  C  K  M  Y  E  H  N  S  F  V  I  D  Q  A  Y  E  F  S  A  P  R  F  Y  D  F  V  D  E  E  T  E  E  E  T  Q  K  A  E  H  W  F  H  I  S  R  S  Y  A  P  S   : P  F  M  P  K  I  K  T  G  R  M  V  Q  L  E  S  L  C  D  F  T  D  A  E  E  L  Q  D  N  T  R :   P  A  T  E  L  T  S  S  K  S  K  D  E  V  T  P  Y  L  I  V  P  E  P  C  T  S  L  P  N  P  :  E  S  E  E  K  Q  S  I  V  Q   : E  T  C  T  P  G  P  T  I  T  S  Q  K  S  D  S  R  K  T  N  S  K  R  Q  Q  T  A  K  K  I  A  S  I  L  R  N  P  S  A  L  K  S  K  T  Q  Q  Q  Q  S  H  L  S  S  S  </first_frame>
            <second_frame>  L  S  V  K  C  M  N  T  T  L  S  *  S  T  R  R  T  S  S  Q  R  Q  D  F  M  T  L  L  M  K  K  Q  K  R  K  H  R  K  L  S  I  G  S  T  F  Q  E  A  M  L  L  L  :  L  L  C  Q  K  L  K  L  V  E  W  F  N  L  R  A  Y  V  T  S  L  M  L  R  S  C  K  I  T  Q   : G  L  L  L  S  S  L  L  L  K  V  K  T  R  *  R  H  I  *  L  Y  Q  N  L  A  P  V  F  L  I  R :   N  L  K  R  S  S  L  L  F  K  :  K  L  A  H  P  D  Q  Q  *  H  L  R  R  A  T  L  G  R  L  I  P  R  G  N  K  L  L  K  R  L  Q  A  Y  L  E  T  L  Q  H  *  S  Q  K  L  N  N  N  S  R  I  *  V  V  L </second_frame>
            <third_frame>   S  L  *  N  V  *  T  Q  L  F  R  N  R  P  G  V  R  V  L  S  A  K  I  L  *  L  C  *  *  R  N  R  R  G  N  T  E  S  *  A  L  V  P  H  F  K  K  L  C  S  F  S :   F  Y  A  K  N  *  N  W  *  N  G  S  T  *  E  P  M  *  L  H  *  C  *  G  V  A  R  *  H  K  :  A  C  Y  *  A  H  F  F  *  K  *  R  R  G  N  A  I  F  N  C  T  R  T  L  H  Q  S  S  *  S   : G  I  *  R  E  A  V  Y  C  S  R :   N  L  H  T  R  T  N  N  N  I  S  E  E  R  L  S  E  D  *  F  Q  E  A  T  N  C  *  K  D  C  K  H  T  *  K  P  F  S  I  K  V  K  N  S  T  T  T  V  A  S  E  *  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55425" stop="55581"/>
                    <exon start="56103" stop="56193"/>
                    <exon start="56369" stop="56459"/>
                    <exon start="56551" stop="56581"/>
                    <exon start="56669" stop="56829"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>531</number_coding_nucleotides>
                  <number_encoded_amino_acids>177</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLCKMYEHNSFVIDQAYEFSAPRFYDFVDEETEEETQKAEHWFHISRSYAPSPFMPKIKTGRMVQLESLCDFTDAEELQDNTRPATELTSSKSKDEVTPYLIVPEPCTSLPNPESEEKQSIVQETCTPGPTITSQKSDSRKTNSKRQQTAKKIASILRNPSALKSKTQQQQSHLSSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="59138" PGL_stop="60126"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="59138" e_stop="59198"/>
            <exon e_start="59277" e_stop="59385"/>
            <exon e_start="59462" e_stop="59521"/>
            <exon e_start="59603" e_stop="59697"/>
            <exon e_start="59792" e_stop="60126"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.940" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.896" e_score="1.000"/>
          <exon-intron don_prob="0.988" acc_prob="0.810" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.779" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="59138" e_stop="59198" e_length="61"/>
          </exon>
          <intron i_serial="1" don_prob="0.940" acc_prob="0.999">
            <gDNA_intron_boundary i_start="59199" i_stop="59276" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="59277" e_stop="59385" e_length="109"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.896">
            <gDNA_intron_boundary i_start="59386" i_stop="59461" i_length="76"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="59462" e_stop="59521" e_length="60"/>
          </exon>
          <intron i_serial="3" don_prob="0.988" acc_prob="0.810">
            <gDNA_intron_boundary i_start="59522" i_stop="59602" i_length="81"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="59603" e_stop="59697" e_length="95"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.779">
            <gDNA_intron_boundary i_start="59698" i_stop="59791" i_length="94"/>
          </intron>
          <exon e_serial="5" e_score="0.988">
            <gDNA_exon_boundary e_start="59792" e_stop="60126" e_length="335"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="59138" stop="59198"/>
              <exon start="59277" stop="59385"/>
              <exon start="59462" stop="59521"/>
              <exon start="59603" stop="59697"/>
              <exon start="59792" stop="60126"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343327" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAGATTGGAGGAGGAAGAAGCTAAGATGAGGTTATTCAAGGCGCAACCAATCTTGATTGA : GGATCCAATTCCAGTTCCTGAGAAAGAACGTAAACCTTTCACTGAGGTTCAGGAATTCAATCTGCATGTAAATCACCGTGCTGTTGACAGAACTGAATTTGATAAGAAG : ATTAAGGAGAAAGAAATGATGTATAATAGGTATCAGGAGGAAGCAGAATGTGCAAGAATG : ATGGAAGAGGAGAAGGCCTTAAAACAACTAAGGAGAACTTTGGTACCTCATGCTAGACCAGTGCCTAATTTTGATCATCCTTTCCTACCTCAAAA : GTCTTCCAAACATGTCACAAGACCAAGCTCCCCCAAGCTACAGGTTATTAAAAGGAAAGAGAGGAGGAAAATGCTCTGCCCCTATGCAGCAGTTTCTAGTGCTGCTGCCTCTCAAATGAGATGATGATTCAAATCCGACGAGATGAGATGATGATTGTTCAAGAATTCTTGAACCCCCTCCTATATGTTTTATGTCTAACAGTTATGTAATAATAGAGATCTGTATTATTTTTTGTAGCATTCAGCTAGCTTAGCATAATTTAAAATGACAAATAGTTTTGCGCCTATGTAATTATATCATATTCATATTATATTATTTTATATCAAAAGTGAGA</gDNA_template>
            <first_frame> R  D  W  R  R  K  K  L  R  *  G  Y  S  R  R  N  Q  S  *  L   : R  I  Q  F  Q  F  L  R  K  N  V  N  L  S  L  R  F  R  N  S  I  C  M  *  I  T  V  L  L  T  E  L  N  L  I  R  R :   L  R  R  K  K  *  C  I  I  G  I  R  R  K  Q  N  V  Q  E  * :   W  K  R  R  R  P  *  N  N  *  G  E  L  W  Y  L  M  L  D  Q  C  L  I  L  I  I  L  S  Y  L  K   : S  L  P  N  M  S  Q  D  Q  A  P  P  S  Y  R  L  L  K  G  K  R  G  G  K  C  S  A  P  M  Q  Q  F  L  V  L  L  P  L  K  *  D  D  D  S  N  P  T  R  *  D  D  D  C  S  R  I  L  E  P  P  P  I  C  F  M  S  N  S  Y  V  I  I  E  I  C  I  I  F  C  S  I  Q  L  A  *  H  N  L  K  *  Q  I  V  L  R  L  C  N  Y  I  I  F  I  L  Y  Y  F  I  S  K  V  R </first_frame>
            <second_frame>  E  I  G  G  G  R  S  *  D  E  V  I  Q  G  A  T  N  L  D  *  :  G  S  N  S  S  S  *  E  R  T  *  T  F  H  *  G  S  G  I  Q  S  A  C  K  S  P  C  C  *  Q  N  *  I  *  *  E   : D  *  G  E  R  N  D  V  *  *  V  S  G  G  S  R  M  C  K  N   : D  G  R  G  E  G  L  K  T  T  K  E  N  F  G  T  S  C  *  T  S  A  *  F  *  S  S  F  P  T  S  K  :  V  F  Q  T  C  H  K  T  K  L  P  Q  A  T  G  Y  *  K  E  R  E  E  E  N  A  L  P  L  C  S  S  F  *  C  C  C  L  S  N  E  M  M  I  Q  I  R  R  D  E  M  M  I  V  Q  E  F  L  N  P  L  L  Y  V  L  C  L  T  V  M  *  *  *  R  S  V  L  F  F  V  A  F  S  *  L  S  I  I  *  N  D  K  *  F  C  A  Y  V  I  I  S  Y  S  Y  Y  I  I  L  Y  Q  K  *   </second_frame>
            <third_frame>   R  L  E  E  E  E  A  K  M  R  L  F  K  A  Q  P  I  L  I  E :   D  P  I  P  V  P  E  K  E  R  K  P  F  T  E  V  Q  E  F  N  L  H  V  N  H  R  A  V  D  R  T  E  F  D  K  K  :  I  K  E  K  E  M  M  Y  N  R  Y  Q  E  E  A  E  C  A  R  M  :  M  E  E  E  K  A  L  K  Q  L  R  R  T  L  V  P  H  A  R  P  V  P  N  F  D  H  P  F  L  P  Q  K :   S  S  K  H  V  T  R  P  S  S  P  K  L  Q  V  I  K  R  K  E  R  R  K  M  L  C  P  Y  A  A  V  S  S  A  A  A  S  Q  M  R  *  *  F  K  S  D  E  M  R  *  *  L  F  K  N  S  *  T  P  S  Y  M  F  Y  V  *  Q  L  C  N  N  R  D  L  Y  Y  F  L  *  H  S  A  S  L  A  *  F  K  M  T  N  S  F  A  P  M  *  L  Y  H  I  H  I  I  L  F  Y  I  K  S  E  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="59140" stop="59198"/>
                    <exon start="59277" stop="59385"/>
                    <exon start="59462" stop="59521"/>
                    <exon start="59603" stop="59697"/>
                    <exon start="59792" stop="59915"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>444</number_coding_nucleotides>
                  <number_encoded_amino_acids>148</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLEEEEAKMRLFKAQPILIEDPIPVPEKERKPFTEVQEFNLHVNHRAVDRTEFDKKIKEKEMMYNRYQEEAECARMMEEEKALKQLRRTLVPHARPVPNFDHPFLPQKSSKHVTRPSSPKLQVIKRKERRKMLCPYAAVSSAAASQMR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="61840" PGL_stop="59730"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="61840" e_stop="61685"/>
            <exon e_start="61566" e_stop="61450"/>
            <exon e_start="61342" e_stop="61177"/>
            <exon e_start="60589" e_stop="60407"/>
            <exon e_start="59753" e_stop="59730"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.897" acc_prob="0.979" e_score="1.000"/>
          <exon-intron don_prob="0.964" acc_prob="0.252" e_score="0.991"/>
          <exon-intron don_prob="0.985" acc_prob="0.744" e_score="0.982"/>
          <exon-intron don_prob="0.000" acc_prob="0.721" e_score="0.956"/>
          <exon-only e_score="0.625"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="61840" e_stop="61685" e_length="156"/>
          </exon>
          <intron i_serial="1" don_prob="0.897" acc_prob="0.979">
            <gDNA_intron_boundary i_start="61684" i_stop="61567" i_length="118"/>
          </intron>
          <exon e_serial="2" e_score="0.991">
            <gDNA_exon_boundary e_start="61566" e_stop="61450" e_length="117"/>
          </exon>
          <intron i_serial="2" don_prob="0.964" acc_prob="0.252">
            <gDNA_intron_boundary i_start="61449" i_stop="61343" i_length="107"/>
          </intron>
          <exon e_serial="3" e_score="0.982">
            <gDNA_exon_boundary e_start="61342" e_stop="61177" e_length="166"/>
          </exon>
          <intron i_serial="3" don_prob="0.985" acc_prob="0.744">
            <gDNA_intron_boundary i_start="61176" i_stop="60590" i_length="587"/>
          </intron>
          <exon e_serial="4" e_score="0.956">
            <gDNA_exon_boundary e_start="60589" e_stop="60407" e_length="183"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.721">
            <gDNA_intron_boundary i_start="60406" i_stop="59754" i_length="653"/>
          </intron>
          <exon e_serial="5" e_score="0.625">
            <gDNA_exon_boundary e_start="59753" e_stop="59730" e_length="24"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="61840" stop="61685"/>
              <exon start="61566" stop="61450"/>
              <exon start="61342" stop="61177"/>
              <exon start="60589" stop="60407"/>
              <exon start="59753" stop="59730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373220" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCAATTCCATTATATGTCTTTGGCTGTCCTCACAATTTCATGCGTATAGAGCCTGATAAGAATTGGTGCATCTGCTTGGGAGTTTTTATTGTGCTGCAGGCATCAATTCTTCTGTTGCAGCATTACCTTGGATCTCGGTGGTTCATTCCACGTCAG : ATTTTACCTGAGAAGTATAACTATTATAGAAGGTTTGATCAGGGTGCAAATCACGCCACTGACTGTGTTATTTGCATGACTGCTATTGATCATACTCAACGCTCAAATAATTGCATG : GTGACACCTTGTGATCATTTCTTTCACTCTGGTTGTTTGCAAAGATGGATGGACATAAAGATGGAGTGTCCAACATGCCGACGTCCTCTTCCACCCGCTTGAATAAATGTTATTTCTTGAATTCATCTTGGTAGAGCAACTGACATTGCCCGACCTGTTTAGAAAG : GTTGGAGACAGAGAGAATTACATAAGAAGTTTTCTGTATAAAAGTTGAGCACAGATTCACTAGACTTGCTGTATATCTTGTTGATTAACTGTCTATTCTTTTCTTATATTTCACATAAAAACAATAACATTATCAAATAATTCATAGAATTTATGGAATATTTCTTAATTTTTATGTGCCATA : TATGAGGAAGACAAATAAAAGAAA</gDNA_template>
            <first_frame> A  I  P  L  Y  V  F  G  C  P  H  N  F  M  R  I  E  P  D  K  N  W  C  I  C  L  G  V  F  I  V  L  Q  A  S  I  L  L  L  Q  H  Y  L  G  S  R  W  F  I  P  R  Q  :  I  L  P  E  K  Y  N  Y  Y  R  R  F  D  Q  G  A  N  H  A  T  D  C  V  I  C  M  T  A  I  D  H  T  Q  R  S  N  N  C  M  :  V  T  P  C  D  H  F  F  H  S  G  C  L  Q  R  W  M  D  I  K  M  E  C  P  T  C  R  R  P  L  P  P  A  *  I  N  V  I  S  *  I  H  L  G  R  A  T  D  I  A  R  P  V  *  K   : G  W  R  Q  R  E  L  H  K  K  F  S  V  *  K  L  S  T  D  S  L  D  L  L  Y  I  L  L  I  N  C  L  F  F  S  Y  I  S  H  K  N  N  N  I  I  K  *  F  I  E  F  M  E  Y  F  L  I  F  M  C  H   : I  *  G  R  Q  I  K  E  </first_frame>
            <second_frame>  Q  F  H  Y  M  S  L  A  V  L  T  I  S  C  V  *  S  L  I  R  I  G  A  S  A  W  E  F  L  L  C  C  R  H  Q  F  F  C  C  S  I  T  L  D  L  G  G  S  F  H  V  R :   F  Y  L  R  S  I  T  I  I  E  G  L  I  R  V  Q  I  T  P  L  T  V  L  F  A  *  L  L  L  I  I  L  N  A  Q  I  I  A  W :   *  H  L  V  I  I  S  F  T  L  V  V  C  K  D  G  W  T  *  R  W  S  V  Q  H  A  D  V  L  F  H  P  L  E  *  M  L  F  L  E  F  I  L  V  E  Q  L  T  L  P  D  L  F  R  K  :  V  G  D  R  E  N  Y  I  R  S  F  L  Y  K  S  *  A  Q  I  H  *  T  C  C  I  S  C  *  L  T  V  Y  S  F  L  I  F  H  I  K  T  I  T  L  S  N  N  S  *  N  L  W  N  I  S  *  F  L  C  A  I  :  Y  E  E  D  K  *  K  K </second_frame>
            <third_frame>   N  S  I  I  C  L  W  L  S  S  Q  F  H  A  Y  R  A  *  *  E  L  V  H  L  L  G  S  F  Y  C  A  A  G  I  N  S  S  V  A  A  L  P  W  I  S  V  V  H  S  T  S   : D  F  T  *  E  V  *  L  L  *  K  V  *  S  G  C  K  S  R  H  *  L  C  Y  L  H  D  C  Y  *  S  Y  S  T  L  K  *  L  H   : G  D  T  L  *  S  F  L  S  L  W  L  F  A  K  M  D  G  H  K  D  G  V  S  N  M  P  T  S  S  S  T  R  L  N  K  C  Y  F  L  N  S  S  W  *  S  N  *  H  C  P  T  C  L  E  R :   L  E  T  E  R  I  T  *  E  V  F  C  I  K  V  E  H  R  F  T  R  L  A  V  Y  L  V  D  *  L  S  I  L  F  L  Y  F  T  *  K  Q  *  H  Y  Q  I  I  H  R  I  Y  G  I  F  L  N  F  Y  V  P  Y :   M  R  K  T  N  K  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="61840" stop="61685"/>
                    <exon start="61566" stop="61450"/>
                    <exon start="61342" stop="61241"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>372</number_coding_nucleotides>
                  <number_encoded_amino_acids>124</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIPLYVFGCPHNFMRIEPDKNWCICLGVFIVLQASILLLQHYLGSRWFIPRQILPEKYNYYRRFDQGANHATDCVICMTAIDHTQRSNNCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPPA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="67257" PGL_stop="63343"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67257" e_stop="67152"/>
            <exon e_start="66216" e_stop="66101"/>
            <exon e_start="65670" e_stop="65610"/>
            <exon e_start="64666" e_stop="64600"/>
            <exon e_start="64517" e_stop="64440"/>
            <exon e_start="63818" e_stop="63661"/>
            <exon e_start="63572" e_stop="63513"/>
            <exon e_start="63436" e_stop="63343"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.889" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.751" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.759" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.939" e_score="1.000"/>
          <exon-intron don_prob="0.917" acc_prob="0.694" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.980" e_score="1.000"/>
          <exon-only e_score="0.926"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="67257" e_stop="67152" e_length="106"/>
          </exon>
          <intron i_serial="1" don_prob="0.889" acc_prob="0.998">
            <gDNA_intron_boundary i_start="67151" i_stop="66217" i_length="935"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66216" e_stop="66101" e_length="116"/>
          </exon>
          <intron i_serial="2" don_prob="0.751" acc_prob="0.999">
            <gDNA_intron_boundary i_start="66100" i_stop="65671" i_length="430"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65670" e_stop="65610" e_length="61"/>
          </exon>
          <intron i_serial="3" don_prob="0.759" acc_prob="0.991">
            <gDNA_intron_boundary i_start="65609" i_stop="64667" i_length="943"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="64666" e_stop="64600" e_length="67"/>
          </exon>
          <intron i_serial="4" don_prob="0.917" acc_prob="0.996">
            <gDNA_intron_boundary i_start="64599" i_stop="64518" i_length="82"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="64517" e_stop="64440" e_length="78"/>
          </exon>
          <intron i_serial="5" don_prob="0.991" acc_prob="0.939">
            <gDNA_intron_boundary i_start="64439" i_stop="63819" i_length="621"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="63818" e_stop="63661" e_length="158"/>
          </exon>
          <intron i_serial="6" don_prob="0.917" acc_prob="0.694">
            <gDNA_intron_boundary i_start="63660" i_stop="63573" i_length="88"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="63572" e_stop="63513" e_length="60"/>
          </exon>
          <intron i_serial="7" don_prob="0.000" acc_prob="0.980">
            <gDNA_intron_boundary i_start="63512" i_stop="63437" i_length="76"/>
          </intron>
          <exon e_serial="8" e_score="0.926">
            <gDNA_exon_boundary e_start="63436" e_stop="63343" e_length="94"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67257" stop="67152"/>
              <exon start="66216" stop="66101"/>
              <exon start="65670" stop="65610"/>
              <exon start="64666" stop="64600"/>
              <exon start="64517" stop="64440"/>
              <exon start="63818" stop="63661"/>
              <exon start="63572" stop="63513"/>
              <exon start="63436" stop="63343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E332182" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AACAAATAGCTCTTCCAGGTTTCCTGATTTTAGGAAGTCCAATGGCAACTCGGTCCTTGAATTGATAAGTAATCCAACAAAAATAACTGGTGTACATTATATTCAG : GGTGCAATAATTTTCCATGATGTGTTTGACAATGAACATGGAGTTGGTGCTGCACAAATAAGGGTAGAAGGTGTATATATATGGCCATTTAGACAACTTCGAATGGTAGCTTACAG : TGGCAAAGATGGTGAGTTTGGACAGGAAGACGATTATCTATTATCAAATCCATATCACTTG : CTTGGAGTTTTCTCGTCCCAGATATTCCAGGAGTCTTCTCGAGATAAGATTTGGAAAAAGAAACACT : CACCGTTTTACGAGATGGAGAAAAATTGTAATATAGAAATTGCTGCACAAATTGCTCGTGTCTCATCCTCCTCAAATG : ATGCAGCTCGTGACCATTATCAACTAGAAGGATTGATAGAGAGCCCTTCAGTGGATGCTGACGGGGACTGTTTCTCACCGATGCTTTTGAATGCTACTTCTGTCAATATAGAGGTTTACTACAACAAAGCGGTGAACTACACATTGATGGTCACATTT : ATATCTTTTCTGCAAGTGCTCCTTCTGATTCGACAAATGGAACATAGCAACACCCAATCA : GGAGCTGCGAAAGTTTCAATTCTGATGATTGGACAACAGGCTATCATGGATGCTTATCTTTGTCTTTTGCATCTGACCGCAGGGATACTTGTTG</gDNA_template>
            <first_frame> N  K  *  L  F  Q  V  S  *  F  *  E  V  Q  W  Q  L  G  P  *  I  D  K  *  S  N  K  N  N  W  C  T  L  Y  S   : G  C  N  N  F  P  *  C  V  *  Q  *  T  W  S  W  C  C  T  N  K  G  R  R  C  I  Y  M  A  I  *  T  T  S  N  G  S  L  Q  :  W  Q  R  W  *  V  W  T  G  R  R  L  S  I  I  K  S  I  S  L   : A  W  S  F  L  V  P  D  I  P  G  V  F  S  R  *  D  L  E  K  E  T  L :   T  V  L  R  D  G  E  K  L  *  Y  R  N  C  C  T  N  C  S  C  L  I  L  L  K  * :   C  S  S  *  P  L  S  T  R  R  I  D  R  E  P  F  S  G  C  *  R  G  L  F  L  T  D  A  F  E  C  Y  F  C  Q  Y  R  G  L  L  Q  Q  S  G  E  L  H  I  D  G  H  I   : Y  I  F  S  A  S  A  P  S  D  S  T  N  G  T  *  Q  H  P  I   : R  S  C  E  S  F  N  S  D  D  W  T  T  G  Y  H  G  C  L  S  L  S  F  A  S  D  R  R  D  T  C   </first_frame>
            <second_frame>  T  N  S  S  S  R  F  P  D  F  R  K  S  N  G  N  S  V  L  E  L  I  S  N  P  T  K  I  T  G  V  H  Y  I  Q  :  G  A  I  I  F  H  D  V  F  D  N  E  H  G  V  G  A  A  Q  I  R  V  E  G  V  Y  I  W  P  F  R  Q  L  R  M  V  A  Y  S :   G  K  D  G  E  F  G  Q  E  D  D  Y  L  L  S  N  P  Y  H  L  :  L  G  V  F  S  S  Q  I  F  Q  E  S  S  R  D  K  I  W  K  K  K  H   : S  P  F  Y  E  M  E  K  N  C  N  I  E  I  A  A  Q  I  A  R  V  S  S  S  S  N   : D  A  A  R  D  H  Y  Q  L  E  G  L  I  E  S  P  S  V  D  A  D  G  D  C  F  S  P  M  L  L  N  A  T  S  V  N  I  E  V  Y  Y  N  K  A  V  N  Y  T  L  M  V  T  F  :  I  S  F  L  Q  V  L  L  L  I  R  Q  M  E  H  S  N  T  Q  S  :  G  A  A  K  V  S  I  L  M  I  G  Q  Q  A  I  M  D  A  Y  L  C  L  L  H  L  T  A  G  I  L  V  </second_frame>
            <third_frame>   Q  I  A  L  P  G  F  L  I  L  G  S  P  M  A  T  R  S  L  N  *  *  V  I  Q  Q  K  *  L  V  Y  I  I  F  R :   V  Q  *  F  S  M  M  C  L  T  M  N  M  E  L  V  L  H  K  *  G  *  K  V  Y  I  Y  G  H  L  D  N  F  E  W  *  L  T   : V  A  K  M  V  S  L  D  R  K  T  I  I  Y  Y  Q  I  H  I  T  C :   L  E  F  S  R  P  R  Y  S  R  S  L  L  E  I  R  F  G  K  R  N  T  :  H  R  F  T  R  W  R  K  I  V  I  *  K  L  L  H  K  L  L  V  S  H  P  P  Q  M  :  M  Q  L  V  T  I  I  N  *  K  D  *  *  R  A  L  Q  W  M  L  T  G  T  V  S  H  R  C  F  *  M  L  L  L  S  I  *  R  F  T  T  T  K  R  *  T  T  H  *  W  S  H  L :   Y  L  F  C  K  C  S  F  *  F  D  K  W  N  I  A  T  P  N  Q :   E  L  R  K  F  Q  F  *  *  L  D  N  R  L  S  W  M  L  I  F  V  F  C  I  *  P  Q  G  Y  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="67256" stop="67152"/>
                    <exon start="66216" stop="66101"/>
                    <exon start="65670" stop="65610"/>
                    <exon start="64666" stop="64600"/>
                    <exon start="64517" stop="64440"/>
                    <exon start="63818" stop="63661"/>
                    <exon start="63572" stop="63513"/>
                    <exon start="63436" stop="63344"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>738</number_coding_nucleotides>
                  <number_encoded_amino_acids>246</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TNSSSRFPDFRKSNGNSVLELISNPTKITGVHYIQGAIIFHDVFDNEHGVGAAQIRVEGVYIWPFRQLRMVAYSGKDGEFGQEDDYLLSNPYHLLGVFSSQIFQESSRDKIWKKKHSPFYEMEKNCNIEIAAQIARVSSSSNDAARDHYQLEGLIESPSVDADGDCFSPMLLNATSVNIEVYYNKAVNYTLMVTFISFLQVLLLIRQMEHSNTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="69287" PGL_stop="67561"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69287" e_stop="68720"/>
            <exon e_start="67629" e_stop="67561"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.996" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="69287" e_stop="68720" e_length="568"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.996">
            <gDNA_intron_boundary i_start="68719" i_stop="67630" i_length="1090"/>
          </intron>
          <exon e_serial="2" e_score="0.986">
            <gDNA_exon_boundary e_start="67629" e_stop="67561" e_length="69"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69287" stop="68775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E323518" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69200" stop="68720"/>
              <exon start="67629" stop="67561"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289062" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69200" stop="68720"/>
              <exon start="67629" stop="67586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373221" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AATTTAGGAGAAGACTAATGTTAAATGATCTTTAGCTTATTTTTTTACTTTCTGCAGAACTGAAAACACCCCAACTATGTTATTTATAGATTGTATAATTGTTTTTGAATAAAGAAATACAAGTGGAGTTTTCTGGTTGTTGAATTGACTAGGGAAGGGATTCTTGGTGAACCACAAATCAACAAAACCAATGATTCTGTTTATGTTGAGCTTTCATTTTCTTTGAAGTTGATTTTTGTTGTTGAGGTTGTTGTTTTATGTTGTTTGACTTCAATTTAAGCAACCCCTTTTCTTTCTTTCTCTTAAAGTTGTCTCTTTTTTTTGGGAAATTGTAACTGTAATGGACTTTGTTTCTTCATCTGTGTTGCTCAAGAATTGCTTGGAAGTGAAGAATTTGAATTGATCTTGAATGGGTATGGCAAAAAGATTATATTTTTTGAGGTTTAAGAGGAAAAAGTATGGAGTTTTGCTTAGAGTTCTTTTTAGTTTATGGTTCATCCTTGAAGGGATTTGCCCAGTAATGGGTGTCAGGCCTCTCAGAGAAAGATACCGTTCGTGGGGAGATGAG : TGGCTTCTGGTAAGAAAGGATGAGAATGAATTGGGGCCTTTTTCTGCTTGGAATATAACAGGAACTTAC</gDNA_template>
            <first_frame> N  L  G  E  D  *  C  *  M  I  F  S  L  F  F  Y  F  L  Q  N  *  K  H  P  N  Y  V  I  Y  R  L  Y  N  C  F  *  I  K  K  Y  K  W  S  F  L  V  V  E  L  T  R  E  G  I  L  G  E  P  Q  I  N  K  T  N  D  S  V  Y  V  E  L  S  F  S  L  K  L  I  F  V  V  E  V  V  V  L  C  C  L  T  S  I  *  A  T  P  F  L  S  F  S  *  S  C  L  F  F  L  G  N  C  N  C  N  G  L  C  F  F  I  C  V  A  Q  E  L  L  G  S  E  E  F  E  L  I  L  N  G  Y  G  K  K  I  I  F  F  E  V  *  E  E  K  V  W  S  F  A  *  S  S  F  *  F  M  V  H  P  *  R  D  L  P  S  N  G  C  Q  A  S  Q  R  K  I  P  F  V  G  R  *   : V  A  S  G  K  K  G  *  E  *  I  G  A  F  F  C  L  E  Y  N  R  N  L  </first_frame>
            <second_frame>  I  *  E  K  T  N  V  K  *  S  L  A  Y  F  F  T  F  C  R  T  E  N  T  P  T  M  L  F  I  D  C  I  I  V  F  E  *  R  N  T  S  G  V  F  W  L  L  N  *  L  G  K  G  F  L  V  N  H  K  S  T  K  P  M  I  L  F  M  L  S  F  H  F  L  *  S  *  F  L  L  L  R  L  L  F  Y  V  V  *  L  Q  F  K  Q  P  L  F  F  L  S  L  K  V  V  S  F  F  W  E  I  V  T  V  M  D  F  V  S  S  S  V  L  L  K  N  C  L  E  V  K  N  L  N  *  S  *  M  G  M  A  K  R  L  Y  F  L  R  F  K  R  K  K  Y  G  V  L  L  R  V  L  F  S  L  W  F  I  L  E  G  I  C  P  V  M  G  V  R  P  L  R  E  R  Y  R  S  W  G  D  E  :  W  L  L  V  R  K  D  E  N  E  L  G  P  F  S  A  W  N  I  T  G  T  Y </second_frame>
            <third_frame>   F  R  R  R  L  M  L  N  D  L  *  L  I  F  L  L  S  A  E  L  K  T  P  Q  L  C  Y  L  *  I  V  *  L  F  L  N  K  E  I  Q  V  E  F  S  G  C  *  I  D  *  G  R  D  S  W  *  T  T  N  Q  Q  N  Q  *  F  C  L  C  *  A  F  I  F  F  E  V  D  F  C  C  *  G  C  C  F  M  L  F  D  F  N  L  S  N  P  F  S  F  F  L  L  K  L  S  L  F  F  G  K  L  *  L  *  W  T  L  F  L  H  L  C  C  S  R  I  A  W  K  *  R  I  *  I  D  L  E  W  V  W  Q  K  D  Y  I  F  *  G  L  R  G  K  S  M  E  F  C  L  E  F  F  L  V  Y  G  S  S  L  K  G  F  A  Q  *  W  V  S  G  L  S  E  K  D  T  V  R  G  E  M  S :   G  F  W  *  E  R  M  R  M  N  W  G  L  F  L  L  G  I  *  Q  E  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="-"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68878" stop="68720"/>
                    <exon start="67629" stop="67561"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MGMAKRLYFLRFKRKKYGVLLRVLFSLWFILEGICPVMGVRPLRERYRSWGDEWLLVRKDENELGPFSAWNITGTY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="76612" PGL_stop="75904"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76612" e_stop="75904"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76612" e_stop="75904" e_length="709"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76612" stop="75904"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E211451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76592" stop="75993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203603" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76562" stop="76017"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E212849" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAAAACACTCATACACCATTTCATTTTCATTGTTCGTTGGCTGATTAATTTAATTTCATATCGAGTAGGCCAATTAAAACGAAAAACTCTCCCTTCTCAGACTTGAAGTCAGAGACTTCTGATTAAGGATCGAGAGATATCAACGTTCATAGCAAAAACACGTTAAATTGGTGCTCTGCCTTGTTTTTTTTGTGTCCAATTATGGCTTTCCTTAGGTGCTTTGGGTACAACGTAAGGCGCGGTGGACTTACTGATGTTCGTGTATTTGCAGAAGGTGATAAAGAAGATGAATCAGATAACACAATGATTGCTGATGCAACGAGATATACAAGCCAAGAGTTGAAGAAATTCACCGCAAATTTCTCCAATTCCAATTTAATTGCCTGTGGTGGATTTAGCAGAGTTTATTTAGCGAACTTCCCTGATTTATCTCCCAGGGCTGTAAAAATCATGGACAGCAGCAGCGAGCGTCTCAATGGAATGTACAAGCAAGAATTAGATATCTTGATTCAAATCAAACACGACAACATAGTTAAACTTTTTGATCACTGTGAAGATAATGAATTCGGAAACATGCTCGTGTTTGAGTATGTCTCAAATGGTACTCTACAGGACAAACTCCACGAAAACAGAGATAGGACAATTCTTTCGTGGAGAAACCGAATGGGTGTGGCATTTCAACTTGCTCAAGCTATTGAGTATCTACA</gDNA_template>
            <first_frame> L  K  T  L  I  H  H  F  I  F  I  V  R  W  L  I  N  L  I  S  Y  R  V  G  Q  L  K  R  K  T  L  P  S  Q  T  *  S  Q  R  L  L  I  K  D  R  E  I  S  T  F  I  A  K  T  R  *  I  G  A  L  P  C  F  F  C  V  Q  L  W  L  S  L  G  A  L  G  T  T  *  G  A  V  D  L  L  M  F  V  Y  L  Q  K  V  I  K  K  M  N  Q  I  T  Q  *  L  L  M  Q  R  D  I  Q  A  K  S  *  R  N  S  P  Q  I  S  P  I  P  I  *  L  P  V  V  D  L  A  E  F  I  *  R  T  S  L  I  Y  L  P  G  L  *  K  S  W  T  A  A  A  S  V  S  M  E  C  T  S  K  N  *  I  S  *  F  K  S  N  T  T  T  *  L  N  F  L  I  T  V  K  I  M  N  S  E  T  C  S  C  L  S  M  S  Q  M  V  L  Y  R  T  N  S  T  K  T  E  I  G  Q  F  F  R  G  E  T  E  W  V  W  H  F  N  L  L  K  L  L  S  I  Y  </first_frame>
            <second_frame>  *  K  H  S  Y  T  I  S  F  S  L  F  V  G  *  L  I  *  F  H  I  E  *  A  N  *  N  E  K  L  S  L  L  R  L  E  V  R  D  F  *  L  R  I  E  R  Y  Q  R  S  *  Q  K  H  V  K  L  V  L  C  L  V  F  F  V  S  N  Y  G  F  P  *  V  L  W  V  Q  R  K  A  R  W  T  Y  *  C  S  C  I  C  R  R  *  *  R  R  *  I  R  *  H  N  D  C  *  C  N  E  I  Y  K  P  R  V  E  E  I  H  R  K  F  L  Q  F  Q  F  N  C  L  W  W  I  *  Q  S  L  F  S  E  L  P  *  F  I  S  Q  G  C  K  N  H  G  Q  Q  Q  R  A  S  Q  W  N  V  Q  A  R  I  R  Y  L  D  S  N  Q  T  R  Q  H  S  *  T  F  *  S  L  *  R  *  *  I  R  K  H  A  R  V  *  V  C  L  K  W  Y  S  T  G  Q  T  P  R  K  Q  R  *  D  N  S  F  V  E  K  P  N  G  C  G  I  S  T  C  S  S  Y  *  V  S  T </second_frame>
            <third_frame>   K  N  T  H  T  P  F  H  F  H  C  S  L  A  D  *  F  N  F  I  S  S  R  P  I  K  T  K  N  S  P  F  S  D  L  K  S  E  T  S  D  *  G  S  R  D  I  N  V  H  S  K  N  T  L  N  W  C  S  A  L  F  F  L  C  P  I  M  A  F  L  R  C  F  G  Y  N  V  R  R  G  G  L  T  D  V  R  V  F  A  E  G  D  K  E  D  E  S  D  N  T  M  I  A  D  A  T  R  Y  T  S  Q  E  L  K  K  F  T  A  N  F  S  N  S  N  L  I  A  C  G  G  F  S  R  V  Y  L  A  N  F  P  D  L  S  P  R  A  V  K  I  M  D  S  S  S  E  R  L  N  G  M  Y  K  Q  E  L  D  I  L  I  Q  I  K  H  D  N  I  V  K  L  F  D  H  C  E  D  N  E  F  G  N  M  L  V  F  E  Y  V  S  N  G  T  L  Q  D  K  L  H  E  N  R  D  R  T  I  L  S  W  R  N  R  M  G  V  A  F  Q  L  A  Q  A  I  E  Y  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76484" stop="75906"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>579</number_coding_nucleotides>
                  <number_encoded_amino_acids>193</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GSRDINVHSKNTLNWCSALFFLCPIMAFLRCFGYNVRRGGLTDVRVFAEGDKEDESDNTMIADATRYTSQELKKFTANFSNSNLIACGGFSRVYLANFPDLSPRAVKIMDSSSERLNGMYKQELDILIQIKHDNIVKLFDHCEDNEFGNMLVFEYVSNGTLQDKLHENRDRTILSWRNRMGVAFQLAQAIEYL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="85787" PGL_stop="84913"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="85787" e_stop="84913"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.998">
            <gDNA_exon_boundary e_start="85787" e_stop="84913" e_length="875"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85787" stop="85324"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238191" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85787" stop="85345"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85783" stop="85394"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E242524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85764" stop="85263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324734" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85531" stop="85343"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244797" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85461" stop="84913"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E231240" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="85461" stop="84961"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228088" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACCTACACCCTCTCAGAATCAACGTTACAAGCTCTCTTTCTTTGATCAAATTGCTGAGAGAGAGCACATTCCTGTTGTTCTTTTCTATCCTTATAATAATATTAATAGCCACACTATCGATGAACGTCTTGAGAAATCCCTTTCTGATGTATTAACTCATGTTTATCCAGCAGCAGGAAGGTATGACGACAACGCTGAATGTTCGATTCTCTGTCTTGATCAAGGTGTTTCCTATACCAAAGCCAAGGTCAATTGTAAGCTTGGTAATTTCTTAGAGAAAACACGCAAGGATTTGAGTGTTGCAACTTTATTTGGGCCACATGAAAATAAGAACATGGATCAAAATAATTTTATGGTATCGCCAATTGTGATTATTCAAGTAACTAAATTTGAATGTGGTGGCCTAGCTTTATCATTCAGTGTTTCACACCCTGCAATGGATGGTTTCACAGGTTTGCAATTTCTATTTGGTTGGGGAAAAGTGTGTAGATTGGGAACTCCCATCGATAAGATTCATTTCCTAAGCTTCAATTTAGGTAATATTTTCCCAACAAGAGATACATCAGCTCTTTTCAACTCAGCCGACGTAGTAAATAGAGAAGAAAATATTGTTGTTAAGAGATTCGTTGTTCGTGAAGCTGCTCTATCAAGGCTCAAAAAACAATGCATTGATGAATCAGGCGGAGCTTTGACTTTTCAACCTTCAAGGGTTGAAATAGTTACAGCAATCCTATGGAGGGCTTTTATCCGCGCTTCAGCAGCTAGAAATGGGTTTGTTAGACCTTCTCTAATGGACTTCCCATTGAATTTACGCTCTAAATCATCTTTACCTCAAGTAAAAACCTCTATGGGAAATTTCAGAATCGATGTTCC</gDNA_template>
            <first_frame> S  P  T  P  S  Q  N  Q  R  Y  K  L  S  F  F  D  Q  I  A  E  R  E  H  I  P  V  V  L  F  Y  P  Y  N  N  I  N  S  H  T  I  D  E  R  L  E  K  S  L  S  D  V  L  T  H  V  Y  P  A  A  G  R  Y  D  D  N  A  E  C  S  I  L  C  L  D  Q  G  V  S  Y  T  K  A  K  V  N  C  K  L  G  N  F  L  E  K  T  R  K  D  L  S  V  A  T  L  F  G  P  H  E  N  K  N  M  D  Q  N  N  F  M  V  S  P  I  V  I  I  Q  V  T  K  F  E  C  G  G  L  A  L  S  F  S  V  S  H  P  A  M  D  G  F  T  G  L  Q  F  L  F  G  W  G  K  V  C  R  L  G  T  P  I  D  K  I  H  F  L  S  F  N  L  G  N  I  F  P  T  R  D  T  S  A  L  F  N  S  A  D  V  V  N  R  E  E  N  I  V  V  K  R  F  V  V  R  E  A  A  L  S  R  L  K  K  Q  C  I  D  E  S  G  G  A  L  T  F  Q  P  S  R  V  E  I  V  T  A  I  L  W  R  A  F  I  R  A  S  A  A  R  N  G  F  V  R  P  S  L  M  D  F  P  L  N  L  R  S  K  S  S  L  P  Q  V  K  T  S  M  G  N  F  R  I  D  V   </first_frame>
            <second_frame>  H  L  H  P  L  R  I  N  V  T  S  S  L  S  L  I  K  L  L  R  E  S  T  F  L  L  F  F  S  I  L  I  I  I  L  I  A  T  L  S  M  N  V  L  R  N  P  F  L  M  Y  *  L  M  F  I  Q  Q  Q  E  G  M  T  T  T  L  N  V  R  F  S  V  L  I  K  V  F  P  I  P  K  P  R  S  I  V  S  L  V  I  S  *  R  K  H  A  R  I  *  V  L  Q  L  Y  L  G  H  M  K  I  R  T  W  I  K  I  I  L  W  Y  R  Q  L  *  L  F  K  *  L  N  L  N  V  V  A  *  L  Y  H  S  V  F  H  T  L  Q  W  M  V  S  Q  V  C  N  F  Y  L  V  G  E  K  C  V  D  W  E  L  P  S  I  R  F  I  S  *  A  S  I  *  V  I  F  S  Q  Q  E  I  H  Q  L  F  S  T  Q  P  T  *  *  I  E  K  K  I  L  L  L  R  D  S  L  F  V  K  L  L  Y  Q  G  S  K  N  N  A  L  M  N  Q  A  E  L  *  L  F  N  L  Q  G  L  K  *  L  Q  Q  S  Y  G  G  L  L  S  A  L  Q  Q  L  E  M  G  L  L  D  L  L  *  W  T  S  H  *  I  Y  A  L  N  H  L  Y  L  K  *  K  P  L  W  E  I  S  E  S  M  F  </second_frame>
            <third_frame>   T  Y  T  L  S  E  S  T  L  Q  A  L  F  L  *  S  N  C  *  E  R  A  H  S  C  C  S  F  L  S  L  *  *  Y  *  *  P  H  Y  R  *  T  S  *  E  I  P  F  *  C  I  N  S  C  L  S  S  S  R  K  V  *  R  Q  R  *  M  F  D  S  L  S  *  S  R  C  F  L  Y  Q  S  Q  G  Q  L  *  A  W  *  F  L  R  E  N  T  Q  G  F  E  C  C  N  F  I  W  A  T  *  K  *  E  H  G  S  K  *  F  Y  G  I  A  N  C  D  Y  S  S  N  *  I  *  M  W  W  P  S  F  I  I  Q  C  F  T  P  C  N  G  W  F  H  R  F  A  I  S  I  W  L  G  K  S  V  *  I  G  N  S  H  R  *  D  S  F  P  K  L  Q  F  R  *  Y  F  P  N  K  R  Y  I  S  S  F  Q  L  S  R  R  S  K  *  R  R  K  Y  C  C  *  E  I  R  C  S  *  S  C  S  I  K  A  Q  K  T  M  H  *  *  I  R  R  S  F  D  F  S  T  F  K  G  *  N  S  Y  S  N  P  M  E  G  F  Y  P  R  F  S  S  *  K  W  V  C  *  T  F  S  N  G  L  P  I  E  F  T  L  *  I  I  F  T  S  S  K  N  L  Y  G  K  F  Q  N  R  C  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="85787" stop="84915"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>873</number_coding_nucleotides>
                  <number_encoded_amino_acids>291</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SPTPSQNQRYKLSFFDQIAEREHIPVVLFYPYNNINSHTIDERLEKSLSDVLTHVYPAAGRYDDNAECSILCLDQGVSYTKAKVNCKLGNFLEKTRKDLSVATLFGPHENKNMDQNNFMVSPIVIIQVTKFECGGLALSFSVSHPAMDGFTGLQFLFGWGKVCRLGTPIDKIHFLSFNLGNIFPTRDTSALFNSADVVNREENIVVKRFVVREAALSRLKKQCIDESGGALTFQPSRVEIVTAILWRAFIRASAARNGFVRPSLMDFPLNLRSKSSLPQVKTSMGNFRIDV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="96290" PGL_stop="99767"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="96290" e_stop="97038"/>
            <exon e_start="97647" e_stop="97740"/>
            <exon e_start="97819" e_stop="97852"/>
            <exon e_start="97952" e_stop="98006"/>
            <exon e_start="98799" e_stop="98848"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.978" acc_prob="0.440" e_score="0.999"/>
          <exon-intron don_prob="0.966" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="96290" e_stop="97038" e_length="749"/>
          </exon>
          <intron i_serial="1" don_prob="0.978" acc_prob="0.440">
            <gDNA_intron_boundary i_start="97039" i_stop="97646" i_length="608"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97647" e_stop="97740" e_length="94"/>
          </exon>
          <intron i_serial="2" don_prob="0.966" acc_prob="0.915">
            <gDNA_intron_boundary i_start="97741" i_stop="97818" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="97819" e_stop="97852" e_length="34"/>
          </exon>
          <intron i_serial="3" don_prob="0.983" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97853" i_stop="97951" i_length="99"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="97952" e_stop="98006" e_length="55"/>
          </exon>
          <intron i_serial="4" don_prob="0.942" acc_prob="0.990">
            <gDNA_intron_boundary i_start="98007" i_stop="98798" i_length="792"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="98799" e_stop="98848" e_length="50"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96290" stop="97038"/>
              <exon start="97647" stop="97706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258562" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96290" stop="96504"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258594" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96374" stop="96980"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96437" stop="97002"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E325144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96437" stop="96978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342843" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96437" stop="96720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203575" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96589" stop="97038"/>
              <exon start="97647" stop="97674"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207332" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96678" stop="97038"/>
              <exon start="97647" stop="97740"/>
              <exon start="97819" stop="97852"/>
              <exon start="97952" stop="98006"/>
              <exon start="98799" stop="98848"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286772" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="96707" stop="97038"/>
              <exon start="97647" stop="97740"/>
              <exon start="97819" stop="97838"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E201765" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAATATTTCCTTCGATAACAATCAAATAAGAAAGAGCTTATATTTTTGTTAATTCAATCAATTCCAAAACAAAGTGTCAAGATGAATGAGCCCAATTTAAATTTTAAATTGTAAAAATTTTCAAACTTATTCTACATCCGCTTCACCCCGATTAGCGTATAACGATGGTCGATGAGTGACAACCGGAACAGTGGCATTATTGCTGGAATATTCATCAGCTAGGAGAAAAAATGCAGGCTCTTGTGTCAGCACCAACTAGCTGTTACATCAATTGCACAAGAAGAAGAAGATTTATACACAATAATCAATATGACACCTCCAAAGATTACCCCTTTTCTTCTTCACCAACTAAATCACTTTGTTTTTCAAGCACCCATTTGCCTTTTCAATCACAAAATCTTGTTCTGTATCGAAAACCCATTTCATTAATATCCAGAGGACAGCTTCTGTGTTCAAATTCGTCAACTGCCATTACTGCTGATGGTGATGACAACAAGAATAAAAGCTTTGGGGATTGGATCCAAAGTGTTGGGGAAACGATTTCTGTTTTGTTTCCCTTGTGGGTAGCTTTGGGTTGCTTGATTGGGCTGCTTAAACCTAGCTCGTACAATTGGGTCAAACCTCAATGGACTGTGATGGGCATTACACTCACTATGCTTGGTATGGGAATGACTCTTACTTTCGATGACCTTCGTGGTGCTTTAGCGATGCCTAAAGAGCTGTTCTGCGGATTCATCCTTCAGTATTCG : GTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAG : GGACGGCAAGTAACATTGTCACTTACATTGCACG : TGGAAATGTGGCGCTTTCAGTTTTGATGACTGCTGCAAGTACCCTATCTGCCGTG : GTGATGACCCCTTTTCTAACAGAGAAACTTGCAGGGCAATTTGTTGCAGT</gDNA_template>
            <first_frame> K  Y  F  L  R  *  Q  S  N  K  K  E  L  I  F  L  L  I  Q  S  I  P  K  Q  S  V  K  M  N  E  P  N  L  N  F  K  L  *  K  F  S  N  L  F  Y  I  R  F  T  P  I  S  V  *  R  W  S  M  S  D  N  R  N  S  G  I  I  A  G  I  F  I  S  *  E  K  K  C  R  L  L  C  Q  H  Q  L  A  V  T  S  I  A  Q  E  E  E  D  L  Y  T  I  I  N  M  T  P  P  K  I  T  P  F  L  L  H  Q  L  N  H  F  V  F  Q  A  P  I  C  L  F  N  H  K  I  L  F  C  I  E  N  P  F  H  *  Y  P  E  D  S  F  C  V  Q  I  R  Q  L  P  L  L  L  M  V  M  T  T  R  I  K  A  L  G  I  G  S  K  V  L  G  K  R  F  L  F  C  F  P  C  G  *  L  W  V  A  *  L  G  C  L  N  L  A  R  T  I  G  S  N  L  N  G  L  *  W  A  L  H  S  L  C  L  V  W  E  *  L  L  L  S  M  T  F  V  V  L  *  R  C  L  K  S  C  S  A  D  S  S  F  S  I  R :   *  C  L  Y  R  D  I  L  L  A  S  Y  *  I  C  H  P  I  M  Q  Q  A  *  Y  W  L  A  A  V  L  E  :  G  R  Q  V  T  L  S  L  T  L  H   : V  E  M  W  R  F  Q  F  *  *  L  L  Q  V  P  Y  L  P  W :   *  *  P  L  F  *  Q  R  N  L  Q  G  N  L  L  Q  </first_frame>
            <second_frame>  N  I  S  F  D  N  N  Q  I  R  K  S  L  Y  F  C  *  F  N  Q  F  Q  N  K  V  S  R  *  M  S  P  I  *  I  L  N  C  K  N  F  Q  T  Y  S  T  S  A  S  P  R  L  A  Y  N  D  G  R  *  V  T  T  G  T  V  A  L  L  L  E  Y  S  S  A  R  R  K  N  A  G  S  C  V  S  T  N  *  L  L  H  Q  L  H  K  K  K  K  I  Y  T  Q  *  S  I  *  H  L  Q  R  L  P  L  F  F  F  T  N  *  I  T  L  F  F  K  H  P  F  A  F  S  I  T  K  S  C  S  V  S  K  T  H  F  I  N  I  Q  R  T  A  S  V  F  K  F  V  N  C  H  Y  C  *  W  *  *  Q  Q  E  *  K  L  W  G  L  D  P  K  C  W  G  N  D  F  C  F  V  S  L  V  G  S  F  G  L  L  D  W  A  A  *  T  *  L  V  Q  L  G  Q  T  S  M  D  C  D  G  H  Y  T  H  Y  A  W  Y  G  N  D  S  Y  F  R  *  P  S  W  C  F  S  D  A  *  R  A  V  L  R  I  H  P  S  V  F   : G  D  A  F  I  G  I  F  C  *  Q  A  I  K  F  A  I  P  L  C  S  R  L  D  I  G  W  L  L  S  W  R :   D  G  K  *  H  C  H  L  H  C  T  :  W  K  C  G  A  F  S  F  D  D  C  C  K  Y  P  I  C  R   : G  D  D  P  F  S  N  R  E  T  C  R  A  I  C  C  S </second_frame>
            <third_frame>   I  F  P  S  I  T  I  K  *  E  R  A  Y  I  F  V  N  S  I  N  S  K  T  K  C  Q  D  E  *  A  Q  F  K  F  *  I  V  K  I  F  K  L  I  L  H  P  L  H  P  D  *  R  I  T  M  V  D  E  *  Q  P  E  Q  W  H  Y  C  W  N  I  H  Q  L  G  E  K  M  Q  A  L  V  S  A  P  T  S  C  Y  I  N  C  T  R  R  R  R  F  I  H  N  N  Q  Y  D  T  S  K  D  Y  P  F  S  S  S  P  T  K  S  L  C  F  S  S  T  H  L  P  F  Q  S  Q  N  L  V  L  Y  R  K  P  I  S  L  I  S  R  G  Q  L  L  C  S  N  S  S  T  A  I  T  A  D  G  D  D  N  K  N  K  S  F  G  D  W  I  Q  S  V  G  E  T  I  S  V  L  F  P  L  W  V  A  L  G  C  L  I  G  L  L  K  P  S  S  Y  N  W  V  K  P  Q  W  T  V  M  G  I  T  L  T  M  L  G  M  G  M  T  L  T  F  D  D  L  R  G  A  L  A  M  P  K  E  L  F  C  G  F  I  L  Q  Y  S  :  V  M  P  L  S  G  Y  F  V  S  K  L  L  N  L  P  S  H  Y  A  A  G  L  I  L  V  G  C  C  P  G   : G  T  A  S  N  I  V  T  Y  I  A  R :   G  N  V  A  L  S  V  L  M  T  A  A  S  T  L  S  A  V  :  V  M  T  P  F  L  T  E  K  L  A  G  Q  F  V  A   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="96469" stop="97038"/>
                    <exon start="97647" stop="97740"/>
                    <exon start="97819" stop="97852"/>
                    <exon start="97952" stop="98006"/>
                    <exon start="98799" stop="98846"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>801</number_coding_nucleotides>
                  <number_encoded_amino_acids>267</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QPEQWHYCWNIHQLGEKMQALVSAPTSCYINCTRRRRFIHNNQYDTSKDYPFSSSPTKSLCFSSTHLPFQSQNLVLYRKPISLISRGQLLCSNSSTAITADGDDNKNKSFGDWIQSVGETISVLFPLWVALGCLIGLLKPSSYNWVKPQWTVMGITLTMLGMGMTLTFDDLRGALAMPKELFCGFILQYSVMPLSGYFVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTEKLAGQFVA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="97636" e_stop="97740"/>
            <exon e_start="97819" e_stop="97852"/>
            <exon e_start="97952" e_stop="98006"/>
            <exon e_start="98799" e_stop="98882"/>
            <exon e_start="98964" e_stop="99251"/>
            <exon e_start="99358" e_stop="99767"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.966" acc_prob="0.915" e_score="0.952"/>
          <exon-intron don_prob="0.983" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.942" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.915" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.995" e_score="0.993"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.952">
            <gDNA_exon_boundary e_start="97636" e_stop="97740" e_length="105"/>
          </exon>
          <intron i_serial="1" don_prob="0.966" acc_prob="0.915">
            <gDNA_intron_boundary i_start="97741" i_stop="97818" i_length="78"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="97819" e_stop="97852" e_length="34"/>
          </exon>
          <intron i_serial="2" don_prob="0.983" acc_prob="1.000">
            <gDNA_intron_boundary i_start="97853" i_stop="97951" i_length="99"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="97952" e_stop="98006" e_length="55"/>
          </exon>
          <intron i_serial="3" don_prob="0.942" acc_prob="0.990">
            <gDNA_intron_boundary i_start="98007" i_stop="98798" i_length="792"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="98799" e_stop="98882" e_length="84"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.915">
            <gDNA_intron_boundary i_start="98883" i_stop="98963" i_length="81"/>
          </intron>
          <exon e_serial="5" e_score="0.993">
            <gDNA_exon_boundary e_start="98964" e_stop="99251" e_length="288"/>
          </exon>
          <intron i_serial="5" don_prob="1.000" acc_prob="0.995">
            <gDNA_intron_boundary i_start="99252" i_stop="99357" i_length="106"/>
          </intron>
          <exon e_serial="6" e_score="0.998">
            <gDNA_exon_boundary e_start="99358" e_stop="99767" e_length="410"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97636" stop="97740"/>
              <exon start="97819" stop="97852"/>
              <exon start="97952" stop="98006"/>
              <exon start="98799" stop="98882"/>
              <exon start="98964" stop="99251"/>
              <exon start="99358" stop="99414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99358" stop="99767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282543" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="99570" stop="99767"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539481" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTGGTATAGGTGATGCCTTTATCGGGATATTTTGTTAGCAAGCTATTAAATTTGCCATCCCATTATGCAGCAGGCTTGATATTGGTTGGCTGCTGTCCTGGAG : GGACGGCAAGTAACATTGTCACTTACATTGCACG : TGGAAATGTGGCGCTTTCAGTTTTGATGACTGCTGCAAGTACCCTATCTGCCGTG : GTGATGACCCCTTTTCTAACAGAGAAACTTGCAGGGCAATTTGTTGCAGTAGATGCAGCTGGACTTTTCATGTCTACTTTACAG : GTGGTGCTTCTTCCTGTATTAGCTGGTGCATTTCTGAATCAGTATTTCAAAGGCCTAGTCAAAATCGTGTCTCCATTGATGCCACCTATTGCTGTAGCAACTGTTGCTGTTCTTTGTGGAAATGCAATTGCACAGAGTTCTTCTGCAATCCTTATGTCAGGACAACAGGTTGTCATAGCTGCTGCTCTTCTTCATGCGTCTGGCTTCTTCTTTGGCTATGTACTCGCAAGGATGCTTGGAGTTGATATGTCCTCCTCAAGGACAATATCTATTGAAGTCGGAATGCAG : AACTCGGTTCTTGGAGTAGTTCTAGCCACTCAGCACTTTGGTAATCCACTTACTGCAGTACCATGTGCCGTTTCTAGTGTTTGCCATTCGATATTTGGCAGTGCCTTGGCTGGCATATGGAGGCGTTCTATTCCAGATAAAGTGCAGGACTAAGTCACTCTGTTGGCAATTCTATGATGGTCTGAATATAAGATTGTAGTTTTTCGCAGTGATCATCAAGCTTGGTAGTCAGTGAATTCGGAGATCTTTTTATTTTTTTGGGAAGTTCATAGTGATGTCTGGCGAATCAGCATTAATCTGTCTGTAGTAAAACCAATTTTACTTTGTTGGTGGTGGCGGTAGTAAAACCTATAAACATCTTGATCATTGGCAGGAATTTATCTGCATCTGATATCTAATTCTTGTTCTGT</gDNA_template>
            <first_frame> F  W  Y  R  *  C  L  Y  R  D  I  L  L  A  S  Y  *  I  C  H  P  I  M  Q  Q  A  *  Y  W  L  A  A  V  L  E  :  G  R  Q  V  T  L  S  L  T  L  H   : V  E  M  W  R  F  Q  F  *  *  L  L  Q  V  P  Y  L  P  W :   *  *  P  L  F  *  Q  R  N  L  Q  G  N  L  L  Q  *  M  Q  L  D  F  S  C  L  L  Y  R :   W  C  F  F  L  Y  *  L  V  H  F  *  I  S  I  S  K  A  *  S  K  S  C  L  H  *  C  H  L  L  L  *  Q  L  L  L  F  F  V  E  M  Q  L  H  R  V  L  L  Q  S  L  C  Q  D  N  R  L  S  *  L  L  L  F  F  M  R  L  A  S  S  L  A  M  Y  S  Q  G  C  L  E  L  I  C  P  P  Q  G  Q  Y  L  L  K  S  E  C  R :   T  R  F  L  E  *  F  *  P  L  S  T  L  V  I  H  L  L  Q  Y  H  V  P  F  L  V  F  A  I  R  Y  L  A  V  P  W  L  A  Y  G  G  V  L  F  Q  I  K  C  R  T  K  S  L  C  W  Q  F  Y  D  G  L  N  I  R  L  *  F  F  A  V  I  I  K  L  G  S  Q  *  I  R  R  S  F  Y  F  F  G  K  F  I  V  M  S  G  E  S  A  L  I  C  L  *  *  N  Q  F  Y  F  V  G  G  G  G  S  K  T  Y  K  H  L  D  H  W  Q  E  F  I  C  I  *  Y  L  I  L  V  L  </first_frame>
            <second_frame>  S  G  I  G  D  A  F  I  G  I  F  C  *  Q  A  I  K  F  A  I  P  L  C  S  R  L  D  I  G  W  L  L  S  W  R :   D  G  K  *  H  C  H  L  H  C  T  :  W  K  C  G  A  F  S  F  D  D  C  C  K  Y  P  I  C  R   : G  D  D  P  F  S  N  R  E  T  C  R  A  I  C  C  S  R  C  S  W  T  F  H  V  Y  F  T   : G  G  A  S  S  C  I  S  W  C  I  S  E  S  V  F  Q  R  P  S  Q  N  R  V  S  I  D  A  T  Y  C  C  S  N  C  C  C  S  L  W  K  C  N  C  T  E  F  F  C  N  P  Y  V  R  T  T  G  C  H  S  C  C  S  S  S  C  V  W  L  L  L  W  L  C  T  R  K  D  A  W  S  *  Y  V  L  L  K  D  N  I  Y  *  S  R  N  A   : E  L  G  S  W  S  S  S  S  H  S  A  L  W  *  S  T  Y  C  S  T  M  C  R  F  *  C  L  P  F  D  I  W  Q  C  L  G  W  H  M  E  A  F  Y  S  R  *  S  A  G  L  S  H  S  V  G  N  S  M  M  V  *  I  *  D  C  S  F  S  Q  *  S  S  S  L  V  V  S  E  F  G  D  L  F  I  F  L  G  S  S  *  *  C  L  A  N  Q  H  *  S  V  C  S  K  T  N  F  T  L  L  V  V  A  V  V  K  P  I  N  I  L  I  I  G  R  N  L  S  A  S  D  I  *  F  L  F  C </second_frame>
            <third_frame>   L  V  *  V  M  P  L  S  G  Y  F  V  S  K  L  L  N  L  P  S  H  Y  A  A  G  L  I  L  V  G  C  C  P  G   : G  T  A  S  N  I  V  T  Y  I  A  R :   G  N  V  A  L  S  V  L  M  T  A  A  S  T  L  S  A  V  :  V  M  T  P  F  L  T  E  K  L  A  G  Q  F  V  A  V  D  A  A  G  L  F  M  S  T  L  Q  :  V  V  L  L  P  V  L  A  G  A  F  L  N  Q  Y  F  K  G  L  V  K  I  V  S  P  L  M  P  P  I  A  V  A  T  V  A  V  L  C  G  N  A  I  A  Q  S  S  S  A  I  L  M  S  G  Q  Q  V  V  I  A  A  A  L  L  H  A  S  G  F  F  F  G  Y  V  L  A  R  M  L  G  V  D  M  S  S  S  R  T  I  S  I  E  V  G  M  Q  :  N  S  V  L  G  V  V  L  A  T  Q  H  F  G  N  P  L  T  A  V  P  C  A  V  S  S  V  C  H  S  I  F  G  S  A  L  A  G  I  W  R  R  S  I  P  D  K  V  Q  D  *  V  T  L  L  A  I  L  *  W  S  E  Y  K  I  V  V  F  R  S  D  H  Q  A  W  *  S  V  N  S  E  I  F  L  F  F  W  E  V  H  S  D  V  W  R  I  S  I  N  L  S  V  V  K  P  I  L  L  C  W  W  W  R  *  *  N  L  *  T  S  *  S  L  A  G  I  Y  L  H  L  I  S  N  S  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="97647" stop="97740"/>
                    <exon start="97819" stop="97852"/>
                    <exon start="97952" stop="98006"/>
                    <exon start="98799" stop="98882"/>
                    <exon start="98964" stop="99251"/>
                    <exon start="99358" stop="99510"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VMPLSGYFVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTEKLAGQFVAVDAAGLFMSTLQVVLLPVLAGAFLNQYFKGLVKIVSPLMPPIAVATVAVLCGNAIAQSSSAILMSGQQVVIAAALLHASGFFFGYVLARMLGVDMSSSRTISIEVGMQNSVLGVVLATQHFGNPLTAVPCAVSSVCHSIFGSALAGIWRRSIPDKVQD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="+" PGL_start="104326" PGL_stop="104856"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104326" e_stop="104856"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.989">
            <gDNA_exon_boundary e_start="104326" e_stop="104856" e_length="531"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104326" stop="104856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330609" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104326" stop="104856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348509" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTTTATCTCCATATCCCAAATCCATAAAAGAAAAAAACTAGCACAAAAAAAAAAATTAATGGCTAGTCATCATGAACTTGAACTATCAAATAATTATAGTGATCGAAGTGACGATGACATGGACGAGGACGAGGATGAGCAAGATAACATAGAAGAGGAGGAAAAAGAAGATGATAATTCAAATGACTACAACATTTGTAGTAGTCGTAGTCGAGGAGGAGGATTGACAGACTTCTTTTCGTGGAAAGTCATAGACCCTAGAGCGCCTTGGGTTCAAGAATGGAATCGAGTATTTTTATTAGTATGTGCCACGGGGCTATTTGTGGATCCTCTCTTTTTCTACTCTCTCTCTATCAGCGAGACTTGCATGTGCCTTTTTATCGATGGTTGGTTTGCGGTAACGGTCACCGTTCTTCGATGCATGACCGATGCGATGCATTTATGGAACATGTGGATACGATTCAAGATGCATAAATTACGTCCTTACAATGAAAAAATGGATGAAAATCAAATTACTAGTAGTAGTC</gDNA_template>
            <first_frame> F  F  L  S  P  Y  P  K  S  I  K  E  K  N  *  H  K  K  K  N  *  W  L  V  I  M  N  L  N  Y  Q  I  I  I  V  I  E  V  T  M  T  W  T  R  T  R  M  S  K  I  T  *  K  R  R  K  K  K  M  I  I  Q  M  T  T  T  F  V  V  V  V  V  E  E  E  D  *  Q  T  S  F  R  G  K  S  *  T  L  E  R  L  G  F  K  N  G  I  E  Y  F  Y  *  Y  V  P  R  G  Y  L  W  I  L  S  F  S  T  L  S  L  S  A  R  L  A  C  A  F  L  S  M  V  G  L  R  *  R  S  P  F  F  D  A  *  P  M  R  C  I  Y  G  T  C  G  Y  D  S  R  C  I  N  Y  V  L  T  M  K  K  W  M  K  I  K  L  L  V  V  V </first_frame>
            <second_frame>  F  F  Y  L  H  I  P  N  P  *  K  K  K  T  S  T  K  K  K  I  N  G  *  S  S  *  T  *  T  I  K  *  L  *  *  S  K  *  R  *  H  G  R  G  R  G  *  A  R  *  H  R  R  G  G  K  R  R  *  *  F  K  *  L  Q  H  L  *  *  S  *  S  R  R  R  I  D  R  L  L  F  V  E  S  H  R  P  *  S  A  L  G  S  R  M  E  S  S  I  F  I  S  M  C  H  G  A  I  C  G  S  S  L  F  L  L  S  L  Y  Q  R  D  L  H  V  P  F  Y  R  W  L  V  C  G  N  G  H  R  S  S  M  H  D  R  C  D  A  F  M  E  H  V  D  T  I  Q  D  A  *  I  T  S  L  Q  *  K  N  G  *  K  S  N  Y  *  *  *   </second_frame>
            <third_frame>   F  F  I  S  I  S  Q  I  H  K  R  K  K  L  A  Q  K  K  K  L  M  A  S  H  H  E  L  E  L  S  N  N  Y  S  D  R  S  D  D  D  M  D  E  D  E  D  E  Q  D  N  I  E  E  E  E  K  E  D  D  N  S  N  D  Y  N  I  C  S  S  R  S  R  G  G  G  L  T  D  F  F  S  W  K  V  I  D  P  R  A  P  W  V  Q  E  W  N  R  V  F  L  L  V  C  A  T  G  L  F  V  D  P  L  F  F  Y  S  L  S  I  S  E  T  C  M  C  L  F  I  D  G  W  F  A  V  T  V  T  V  L  R  C  M  T  D  A  M  H  L  W  N  M  W  I  R  F  K  M  H  K  L  R  P  Y  N  E  K  M  D  E  N  Q  I  T  S  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="+"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104328" stop="104855"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>528</number_coding_nucleotides>
                  <number_encoded_amino_acids>176</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FFISISQIHKRKKLAQKKKLMASHHELELSNNYSDRSDDDMDEDEDEQDNIEEEEKEDDNSNDYNICSSRSRGGGLTDFFSWKVIDPRAPWVQEWNRVFLLVCATGLFVDPLFFYSLSISETCMCLFIDGWFAVTVTVLRCMTDAMHLWNMWIRFKMHKLRPYNEKMDENQITSSS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="+" PGL_start="106704" PGL_stop="107663"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="106704" e_stop="106795"/>
            <exon e_start="107174" e_stop="107487"/>
            <exon e_start="107648" e_stop="107663"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.994" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="106704" e_stop="106795" e_length="92"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.997">
            <gDNA_intron_boundary i_start="106796" i_stop="107173" i_length="378"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="107174" e_stop="107487" e_length="314"/>
          </exon>
          <intron i_serial="2" don_prob="1.000" acc_prob="0.994">
            <gDNA_intron_boundary i_start="107488" i_stop="107647" i_length="160"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="107648" e_stop="107663" e_length="16"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="106704" stop="106795"/>
              <exon start="107174" stop="107487"/>
              <exon start="107648" stop="107663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311544" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAGACGCATGCAGAATCTCTCTGGATACATTTTTGGTACTGTTTGGTGGGGAATTGCTCTTAACTTGATTGCTTATTTTGTTGCCTCCCAT : GCAGTGGGAGCATGTTGGTACTTGCTAGGAATCCAAAGGGCAGCAAAATGTTTGAAACAACAGTGTAGAGTTACAAATGGTTGTAGCCTAAGAATGTTGGCATGTGAAGAGAAAATATTTTATGGAACAAGTAGTTTGGTGAAGCATAGAAGTAGAGTCATATGGGGTGAGTCCAAAATTGCAAGATCAACATGTCTAGCCTCTGAACACAATTTTGATTATGGAGTTTATAAATGGACTGTTCAACTTGTCACAAATGAGAATCGTTTTGAGAAAATATTATTTCCCATCTTCTGGGGTCTCATGACTCTCAG : TACATTTGGAAACTTG</gDNA_template>
            <first_frame> *  D  A  C  R  I  S  L  D  T  F  L  V  L  F  G  G  E  L  L  L  T  *  L  L  I  L  L  P  P  M :   Q  W  E  H  V  G  T  C  *  E  S  K  G  Q  Q  N  V  *  N  N  S  V  E  L  Q  M  V  V  A  *  E  C  W  H  V  K  R  K  Y  F  M  E  Q  V  V  W  *  S  I  E  V  E  S  Y  G  V  S  P  K  L  Q  D  Q  H  V  *  P  L  N  T  I  L  I  M  E  F  I  N  G  L  F  N  L  S  Q  M  R  I  V  L  R  K  Y  Y  F  P  S  S  G  V  S  *  L  S   : V  H  L  E  T   </first_frame>
            <second_frame>  K  T  H  A  E  S  L  W  I  H  F  W  Y  C  L  V  G  N  C  S  *  L  D  C  L  F  C  C  L  P   : C  S  G  S  M  L  V  L  A  R  N  P  K  G  S  K  M  F  E  T  T  V  *  S  Y  K  W  L  *  P  K  N  V  G  M  *  R  E  N  I  L  W  N  K  *  F  G  E  A  *  K  *  S  H  M  G  *  V  Q  N  C  K  I  N  M  S  S  L  *  T  Q  F  *  L  W  S  L  *  M  D  C  S  T  C  H  K  *  E  S  F  *  E  N  I  I  S  H  L  L  G  S  H  D  S  Q  :  Y  I  W  K  L  </second_frame>
            <third_frame>   R  R  M  Q  N  L  S  G  Y  I  F  G  T  V  W  W  G  I  A  L  N  L  I  A  Y  F  V  A  S  H  :  A  V  G  A  C  W  Y  L  L  G  I  Q  R  A  A  K  C  L  K  Q  Q  C  R  V  T  N  G  C  S  L  R  M  L  A  C  E  E  K  I  F  Y  G  T  S  S  L  V  K  H  R  S  R  V  I  W  G  E  S  K  I  A  R  S  T  C  L  A  S  E  H  N  F  D  Y  G  V  Y  K  W  T  V  Q  L  V  T  N  E  N  R  F  E  K  I  L  F  P  I  F  W  G  L  M  T  L  S :   T  F  G  N  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="+"/>
                <serials PGL_serial="17" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="106706" stop="106795"/>
                    <exon start="107174" stop="107487"/>
                    <exon start="107648" stop="107663"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>420</number_coding_nucleotides>
                  <number_encoded_amino_acids>140</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RRMQNLSGYIFGTVWWGIALNLIAYFVASHAVGACWYLLGIQRAAKCLKQQCRVTNGCSLRMLACEEKIFYGTSSLVKHRSRVIWGESKIARSTCLASEHNFDYGVYKWTVQLVTNENRFEKILFPIFWGLMTLSTFGNL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="109606" PGL_stop="110139"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="109606" e_stop="109697"/>
            <exon e_start="109948" e_stop="110139"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.945" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="109606" e_stop="109697" e_length="92"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.945">
            <gDNA_intron_boundary i_start="109698" i_stop="109947" i_length="250"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="109948" e_stop="110139" e_length="192"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="109606" stop="109697"/>
              <exon start="109948" stop="110139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237483" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATCTCCAAAGCAGTCAAGAACTTAGAGATGGTGTCAAAAGTTGTTGCATGTTGGGCCCTGGAAACTTCAGCGGCGACGAACTTCTCTCATG : GTGCCTCCGGAAACCCTTCGTGGAGCGTCTACCGCCTTCCTCCTCATCGCTAGTGACTCTCGAGACCACAGAAGCGTTTGGCCTCGAAGCAGATGATGTCAAGTATGTCACTCAACATTTCCGCTACACATTTGTGAATGAGAAAGTGAAGAGAAGCGCCAGATATTATTCTCCAGGATGGCGAACTTGGGC</gDNA_template>
            <first_frame> H  L  Q  S  S  Q  E  L  R  D  G  V  K  S  C  C  M  L  G  P  G  N  F  S  G  D  E  L  L  S  W :   C  L  R  K  P  F  V  E  R  L  P  P  S  S  S  S  L  V  T  L  E  T  T  E  A  F  G  L  E  A  D  D  V  K  Y  V  T  Q  H  F  R  Y  T  F  V  N  E  K  V  K  R  S  A  R  Y  Y  S  P  G  W  R  T  W   </first_frame>
            <second_frame>  I  S  K  A  V  K  N  L  E  M  V  S  K  V  V  A  C  W  A  L  E  T  S  A  A  T  N  F  S  H   : G  A  S  G  N  P  S  W  S  V  Y  R  L  P  P  H  R  *  *  L  S  R  P  Q  K  R  L  A  S  K  Q  M  M  S  S  M  S  L  N  I  S  A  T  H  L  *  M  R  K  *  R  E  A  P  D  I  I  L  Q  D  G  E  L  G  </second_frame>
            <third_frame>   S  P  K  Q  S  R  T  *  R  W  C  Q  K  L  L  H  V  G  P  W  K  L  Q  R  R  R  T  S  L  M  :  V  P  P  E  T  L  R  G  A  S  T  A  F  L  L  I  A  S  D  S  R  D  H  R  S  V  W  P  R  S  R  *  C  Q  V  C  H  S  T  F  P  L  H  I  C  E  *  E  S  E  E  K  R  Q  I  L  F  S  R  M  A  N  L  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="109606" stop="109697"/>
                    <exon start="109948" stop="110137"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HLQSSQELRDGVKSCCMLGPGNFSGDELLSWCLRKPFVERLPPSSSSLVTLETTEAFGLEADDVKYVTQHFRYTFVNEKVKRSARYYSPGWRTW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="111201" PGL_stop="110571"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="111201" e_stop="111124"/>
            <exon e_start="111040" e_stop="110921"/>
            <exon e_start="110824" e_stop="110571"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.969" acc_prob="0.797" e_score="0.962"/>
          <exon-intron don_prob="0.998" acc_prob="0.876" e_score="0.975"/>
          <exon-only e_score="0.984"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="111201" e_stop="111124" e_length="78"/>
          </exon>
          <intron i_serial="1" don_prob="0.969" acc_prob="0.797">
            <gDNA_intron_boundary i_start="111123" i_stop="111041" i_length="83"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="111040" e_stop="110921" e_length="120"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.876">
            <gDNA_intron_boundary i_start="110920" i_stop="110825" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="0.984">
            <gDNA_exon_boundary e_start="110824" e_stop="110571" e_length="254"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="111201" stop="111124"/>
              <exon start="111040" stop="110921"/>
              <exon start="110824" stop="110571"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391686" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGATGAACAAAAGGATAAAGTCTGTATTGAGCGTACTCTAAAGGTGGTGTTCTTGGACCCTGAACGCCCTTCTCCA : GCACTGGATAAACTAAAACGTCAGCTGGCCCAAGCTGAGGCTGCAACAGAAGCTGAGAAGAAACCTCCTGTTGACACAGGTCCGAAAGTTGTGGGAGAAGGCTTAATAGTAGATGAATGG : AAAGAGCGGAGGGAGAGGTATCTTGCTCGCCAACAAGTTGAGGCAGTGGATTCAGTAAAGCAGTAGAGAGTGTTTATGTAAGTGCGTCTTTTTCCAGAATAGCAATGTATAATCAGATATGCACTTCTTATTATTGCCTTTCTTTGGATTGATGGTGTAGAAGGTTAATGCAATGCTTCATGTAAAGAAGAACACTGAGTGGAGATTTAAGATTATATAAGATTAGAAATAATTATATTCAGGAAAAGATACAA</gDNA_template>
            <first_frame> F  D  E  Q  K  D  K  V  C  I  E  R  T  L  K  V  V  F  L  D  P  E  R  P  S  P  :  A  L  D  K  L  K  R  Q  L  A  Q  A  E  A  A  T  E  A  E  K  K  P  P  V  D  T  G  P  K  V  V  G  E  G  L  I  V  D  E  W  :  K  E  R  R  E  R  Y  L  A  R  Q  Q  V  E  A  V  D  S  V  K  Q  *  R  V  F  M  *  V  R  L  F  P  E  *  Q  C  I  I  R  Y  A  L  L  I  I  A  F  L  W  I  D  G  V  E  G  *  C  N  A  S  C  K  E  E  H  *  V  E  I  *  D  Y  I  R  L  E  I  I  I  F  R  K  R  Y   </first_frame>
            <second_frame>  L  M  N  K  R  I  K  S  V  L  S  V  L  *  R  W  C  S  W  T  L  N  A  L  L  Q :   H  W  I  N  *  N  V  S  W  P  K  L  R  L  Q  Q  K  L  R  R  N  L  L  L  T  Q  V  R  K  L  W  E  K  A  *  *  *  M  N  G :   K  S  G  G  R  G  I  L  L  A  N  K  L  R  Q  W  I  Q  *  S  S  R  E  C  L  C  K  C  V  F  F  Q  N  S  N  V  *  S  D  M  H  F  L  L  L  P  F  F  G  L  M  V  *  K  V  N  A  M  L  H  V  K  K  N  T  E  W  R  F  K  I  I  *  D  *  K  *  L  Y  S  G  K  D  T  </second_frame>
            <third_frame>   *  *  T  K  G  *  S  L  Y  *  A  Y  S  K  G  G  V  L  G  P  *  T  P  F  S   : S  T  G  *  T  K  T  S  A  G  P  S  *  G  C  N  R  S  *  E  E  T  S  C  *  H  R  S  E  S  C  G  R  R  L  N  S  R  *  M   : E  R  A  E  G  E  V  S  C  S  P  T  S  *  G  S  G  F  S  K  A  V  E  S  V  Y  V  S  A  S  F  S  R  I  A  M  Y  N  Q  I  C  T  S  Y  Y  C  L  S  L  D  *  W  C  R  R  L  M  Q  C  F  M  *  R  R  T  L  S  G  D  L  R  L  Y  K  I  R  N  N  Y  I  Q  E  K  I  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0140M01.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="111201" stop="111124"/>
                    <exon start="111040" stop="110921"/>
                    <exon start="110824" stop="110759"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>261</number_coding_nucleotides>
                  <number_encoded_amino_acids>87</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDEQKDKVCIERTLKVVFLDPERPSPALDKLKRQLAQAEAATEAEKKPPVDTGPKVVGEGLIVDEWKERRERYLARQQVEAVDSVKQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 188 chains have been computed
$ 
$ memory statistics:
$ 586360 bytes spliced alignments in total
$ 131 spliced alignments have been stored
$ 4476 bytes was the average size of a spliced alignment
$ 32160 bytes predicted gene locations in total
$ 19 predicted gene locations have been stored
$ 1692 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 227 backtrace matrices have been allocated
$ 
$ date finished: 2007-12-12 23:07:57
-->
