<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2008-02-20 12:35:21"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E737635" ref_strand="+" ref_description="SGN-E737635 [LC10CF04]">
      <seq>tgcaggaattcggcacgaggctttttgatgatgttttagcaacttttgttcttcatcacccagagcatgggcatgctgtagttcatccaattatttcatgcatcattgatggaacactggagtatgataaaagtagtccaccttttgcttcttttatatcactggtttgctcaagcagtgagaaggaatattctgaacaatgggctcttgcatgtggagagattttacgtatcctaacacactacaaccgcccgattttcaaagttgatcgtcaggacaaaggaacagatagaagcaccagtggaagccacacttcgacaagtgaatcttcctctagtgaacctggtgtgccctctatacaacatgagagaaaactgctgagaccattgtctccgtggatcactgatatattgcttgctgcaccactagggattagaagcgattacttccgctggtgtggcggtgttatgggaaagtatgctgctggagatctcaagcccccatcaagtgctgcttctcatgggtctgggaagcatccaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="34539" stop="37325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34827" g_stop="34864" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="0.684"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34865" i_stop="34967" i_length="103">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34968" g_stop="35110" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="182" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35111" i_stop="35239" i_length="129">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35240" g_stop="35511" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="454" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35512" i_stop="36087" i_length="576">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36088" g_stop="36143" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="455" r_stop="510" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36144" i_stop="36994" i_length="851">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36995" g_stop="37025" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="541" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E737635" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>540</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737635" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34827" e_stop="34864"/>
          <exon e_start="34968" e_stop="35110"/>
          <exon e_start="35240" e_stop="35511"/>
          <exon e_start="36088" e_stop="36143"/>
          <exon e_start="36995" e_stop="37025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCATCGAAGGAGAAC-AGACTTTTTGATGATGTTTTAGGTATTCTTCTCACCTATTATTTAGCATTTACAGTATTGCTTCCACCTACTTGTGAGGATTGATTGAGTTGTTTCTATATTTTGTTGTTTGTTATAATTGCCAGCAACTTTTGTTCTTCATCACCCAGAGCATGGGCATGCTGTAGTTCATCCAATTATTTCATGCATCATTGATGGAACACTGGAGTATGATAAAAGTAGTCCACCTTTTGCTTCTTTTATATCACTGGTTTGCTCAAGCAGTGAGGTATGCAGATTCATTAAAAAATTAACTTAACTAATCTCATCATGCTTTTTTACTCTTATCATATTTTTGAAGCCCATCTTGAATATCATAATATGAGTCTCACTACTAATCATTAACCCTTTAACACAGAAGGAATATTCTGAACAATGGGCTCTTGCATGTGGAGAGATTTTACGTATCCTAACACACTACAACCGCCCGATTTTCAAAGTTGATCGTCAGGACAAAGGAACAGATAGAAGCACCAGTGGAAGCCACACTTCGACAAGTGAATCTTCCTCTAGTGAACCTGGTGTGCCCTCTATACAACATGAGAGAAAACTGCTGAGACCATTGTCTCCGTGGATCACTGATATATTGCTTGCTGCACCACTAGGGATTAGAAGCGATTACTTCCGCTGGTAAGCATCTCTCAATGTTGTTTGCAGGTTAGATGTTCCATTGCACTTAAAAATTCATTAAGAATATAGGAAAAATTCATTAGCATTCATTGATAGGAGTATTTTGTATCCTTTTTTCTTGTACTGGACAGTGGGCATTTGCATCTGGTTGTCTTGGTTTAGCACGTTGCCCATTGATTACTCAGGGAATGTTGGTTTGGGTTGTCTTAGAGTGTGTGTGTACTATTTCCCTTCAATTGCACCTTTCTTCGCTGAAGCCCCGGCCTTATCAATGCTTTGTGTGTAAAGCCGCTAATAGACTTCAGAATGCTTCTTTTTTTCTGAACTTTTCTCCTTTAGTAATACAGCTTCGAGTCCATTTGATTCCTTCAGAATTTTTCGAATGCTAGTTGACATTTATCCTCTTTTTGGTGCTCTTCAAATTAAAGAACTTCATTACTATTATTTTATTGACGTAGAATATTTTTCATTGAGATTCTCTAAATTGGTACTTGTAGAGATTGAGACTGATGAAAAAGGATAACCGGAAACTACACAATCCTGCTAACTGCTGTGAAATGTTTCATGCTTGTGCAGGTGTGGCGGTGTTATGGGAAAGTATGCTGCTGGAGATCTCAAGCCCCCATCAAGTGGTATGTGGACTTCTGTTTTATGAAATACTTGCTCCTGTCTATGGCTCTAGACCTTCACTTACAACTTTTAGTTTTTTAGCAACCTTAGTGCTATTCCCGTGGACATGGATAACATGCTTGAAAATCAGTGCAAAAAGTCTTCATGCTGGGTAAAAGTGGTAATAGATTAGTGTCCTCTAGTTACTTGCCCTATGATAGTCATCCTCTAGCTTGCGAAAATATTGCTCTGGGTTCATGTTTCTTACCAAGTCTTGCAAAAGAAATATAATCTTCCTTACGTTAACATTAGTTCCTTTTCTTTTTCTAGATTATGTTTCTTGAGAAGAATAAGAAAGAGGAACAGTTGTCCTTGACTGCCACTGCAATTTCCGCTAATTGTGATTATGTGAAAGAATCTAAGCATTCACCCTTAAATCCTTAAGTCACTGCGTGAAAAACTCCCAAGATATTTACAACACTTTGGAAGCCCTTACACAACTTACTTGAGAAAAATATATGGGTGAATAGTCAATACCTTTTTGCACATGTAAGATTCGTACATCAACTCTAGCATGGACTCACTAGTGGGTGAATCGGCTTACCAAAGGATGTCATACTATGTGAATCTGAGTAGAATAGCTAAAAACCTTAATAAATAATTTGGATGCTCTTACACAATCTATGTAGGAGAAGTAATATAACTCAATAGATAACATACATTTGCTTTGTTTCTCTTCATTTTCTTCCACTTGTCCCTCCTATTAGACACTGAGTTTCACAACTTTCTTGTAGAAGGCTAAGATATTAATTTAAAGTGTTTTCATATGTTAGAATCGCAACAGAATTGTTACTGACTTGAAAGTTTATTTTAGCTGCTTCTCATGGGTCTGGGAAGCATCCACA</genome_strand>
        <mrna_strand>TGCAGGAATTCGGCACGAGGCTTTTTGATGATGTTTTAG.......................................................................................................CAACTTTTGTTCTTCATCACCCAGAGCATGGGCATGCTGTAGTTCATCCAATTATTTCATGCATCATTGATGGAACACTGGAGTATGATAAAAGTAGTCCACCTTTTGCTTCTTTTATATCACTGGTTTGCTCAAGCAGTGAG.................................................................................................................................AAGGAATATTCTGAACAATGGGCTCTTGCATGTGGAGAGATTTTACGTATCCTAACACACTACAACCGCCCGATTTTCAAAGTTGATCGTCAGGACAAAGGAACAGATAGAAGCACCAGTGGAAGCCACACTTCGACAAGTGAATCTTCCTCTAGTGAACCTGGTGTGCCCTCTATACAACATGAGAGAAAACTGCTGAGACCATTGTCTCCGTGGATCACTGATATATTGCTTGCTGCACCACTAGGGATTAGAAGCGATTACTTCCGCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGCGGTGTTATGGGAAAGTATGCTGCTGGAGATCTCAAGCCCCCATCAAGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTTCTCATGGGTCTGGGAAGCATCCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E737593" ref_strand="+" ref_description="SGN-E737593 [LC10BH07]">
      <seq>ctttttgatgatgttttagcaacttttgttcttcatcacccagagcatgggcatgctgtagttcatccaattatttcatgcatcattgatggaacactggagtatgataaaagtagtccaccttttgcttcttttatatcactggtttgctcaagcagtgagaaggaatattctgaacaatgggctcttgcatgtggagagattttacgtatcctaacacactacaaccgcccgattttcaaagttgatcgtcaggacaaaggaacagatagaagcaccagtggaagccacacttcgacaagtgaatcttcctctagtgaacctggtgtgccctctatacaacatgagagaaaactgctgagaccattgtctccgtggatcactgatatattgcttgctgcaccactagggattagaagcgattacttccgctggtgtggcggtgttatgggaaagtatgctgctggagatctcaagcccccatcaagtgctgcttctcatgggtctgggaagcatccaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="34546" stop="37325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34846" g_stop="34864" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34865" i_stop="34967" i_length="103">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34968" g_stop="35110" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="162" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35111" i_stop="35239" i_length="129">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35240" g_stop="35511" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="434" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35512" i_stop="36087" i_length="576">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36088" g_stop="36143" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="490" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36144" i_stop="36994" i_length="851">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36995" g_stop="37025" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="521" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E737593" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E737593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34846" e_stop="34864"/>
          <exon e_start="34968" e_stop="35110"/>
          <exon e_start="35240" e_stop="35511"/>
          <exon e_start="36088" e_stop="36143"/>
          <exon e_start="36995" e_stop="37025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTGATGATGTTTTAGGTATTCTTCTCACCTATTATTTAGCATTTACAGTATTGCTTCCACCTACTTGTGAGGATTGATTGAGTTGTTTCTATATTTTGTTGTTTGTTATAATTGCCAGCAACTTTTGTTCTTCATCACCCAGAGCATGGGCATGCTGTAGTTCATCCAATTATTTCATGCATCATTGATGGAACACTGGAGTATGATAAAAGTAGTCCACCTTTTGCTTCTTTTATATCACTGGTTTGCTCAAGCAGTGAGGTATGCAGATTCATTAAAAAATTAACTTAACTAATCTCATCATGCTTTTTTACTCTTATCATATTTTTGAAGCCCATCTTGAATATCATAATATGAGTCTCACTACTAATCATTAACCCTTTAACACAGAAGGAATATTCTGAACAATGGGCTCTTGCATGTGGAGAGATTTTACGTATCCTAACACACTACAACCGCCCGATTTTCAAAGTTGATCGTCAGGACAAAGGAACAGATAGAAGCACCAGTGGAAGCCACACTTCGACAAGTGAATCTTCCTCTAGTGAACCTGGTGTGCCCTCTATACAACATGAGAGAAAACTGCTGAGACCATTGTCTCCGTGGATCACTGATATATTGCTTGCTGCACCACTAGGGATTAGAAGCGATTACTTCCGCTGGTAAGCATCTCTCAATGTTGTTTGCAGGTTAGATGTTCCATTGCACTTAAAAATTCATTAAGAATATAGGAAAAATTCATTAGCATTCATTGATAGGAGTATTTTGTATCCTTTTTTCTTGTACTGGACAGTGGGCATTTGCATCTGGTTGTCTTGGTTTAGCACGTTGCCCATTGATTACTCAGGGAATGTTGGTTTGGGTTGTCTTAGAGTGTGTGTGTACTATTTCCCTTCAATTGCACCTTTCTTCGCTGAAGCCCCGGCCTTATCAATGCTTTGTGTGTAAAGCCGCTAATAGACTTCAGAATGCTTCTTTTTTTCTGAACTTTTCTCCTTTAGTAATACAGCTTCGAGTCCATTTGATTCCTTCAGAATTTTTCGAATGCTAGTTGACATTTATCCTCTTTTTGGTGCTCTTCAAATTAAAGAACTTCATTACTATTATTTTATTGACGTAGAATATTTTTCATTGAGATTCTCTAAATTGGTACTTGTAGAGATTGAGACTGATGAAAAAGGATAACCGGAAACTACACAATCCTGCTAACTGCTGTGAAATGTTTCATGCTTGTGCAGGTGTGGCGGTGTTATGGGAAAGTATGCTGCTGGAGATCTCAAGCCCCCATCAAGTGGTATGTGGACTTCTGTTTTATGAAATACTTGCTCCTGTCTATGGCTCTAGACCTTCACTTACAACTTTTAGTTTTTTAGCAACCTTAGTGCTATTCCCGTGGACATGGATAACATGCTTGAAAATCAGTGCAAAAAGTCTTCATGCTGGGTAAAAGTGGTAATAGATTAGTGTCCTCTAGTTACTTGCCCTATGATAGTCATCCTCTAGCTTGCGAAAATATTGCTCTGGGTTCATGTTTCTTACCAAGTCTTGCAAAAGAAATATAATCTTCCTTACGTTAACATTAGTTCCTTTTCTTTTTCTAGATTATGTTTCTTGAGAAGAATAAGAAAGAGGAACAGTTGTCCTTGACTGCCACTGCAATTTCCGCTAATTGTGATTATGTGAAAGAATCTAAGCATTCACCCTTAAATCCTTAAGTCACTGCGTGAAAAACTCCCAAGATATTTACAACACTTTGGAAGCCCTTACACAACTTACTTGAGAAAAATATATGGGTGAATAGTCAATACCTTTTTGCACATGTAAGATTCGTACATCAACTCTAGCATGGACTCACTAGTGGGTGAATCGGCTTACCAAAGGATGTCATACTATGTGAATCTGAGTAGAATAGCTAAAAACCTTAATAAATAATTTGGATGCTCTTACACAATCTATGTAGGAGAAGTAATATAACTCAATAGATAACATACATTTGCTTTGTTTCTCTTCATTTTCTTCCACTTGTCCCTCCTATTAGACACTGAGTTTCACAACTTTCTTGTAGAAGGCTAAGATATTAATTTAAAGTGTTTTCATATGTTAGAATCGCAACAGAATTGTTACTGACTTGAAAGTTTATTTTAGCTGCTTCTCATGGGTCTGGGAAGCATCCACA</genome_strand>
        <mrna_strand>CTTTTTGATGATGTTTTAG.......................................................................................................CAACTTTTGTTCTTCATCACCCAGAGCATGGGCATGCTGTAGTTCATCCAATTATTTCATGCATCATTGATGGAACACTGGAGTATGATAAAAGTAGTCCACCTTTTGCTTCTTTTATATCACTGGTTTGCTCAAGCAGTGAG.................................................................................................................................AAGGAATATTCTGAACAATGGGCTCTTGCATGTGGAGAGATTTTACGTATCCTAACACACTACAACCGCCCGATTTTCAAAGTTGATCGTCAGGACAAAGGAACAGATAGAAGCACCAGTGGAAGCCACACTTCGACAAGTGAATCTTCCTCTAGTGAACCTGGTGTGCCCTCTATACAACATGAGAGAAAACTGCTGAGACCATTGTCTCCGTGGATCACTGATATATTGCTTGCTGCACCACTAGGGATTAGAAGCGATTACTTCCGCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGCGGTGTTATGGGAAAGTATGCTGCTGGAGATCTCAAGCCCCCATCAAGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTTCTCATGGGTCTGGGAAGCATCCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E738276" ref_strand="+" ref_description="SGN-E738276 [LC13AC03]">
      <seq>ctttttgatgatgttttagcaacttttgttcttcatcacccagagcatgggcatgctgtagttcatccaattatttcatgcatcattgatggaacactggagtatgataaaagtagtccaccttttgcttcttttatatcactggtttgctcaagcagtgagaaggaatattctgaacaatgggctcttgcatgtggagagattttacgtatcctaacacactacaaccgcccgattttcaaagttgatcgtcaggacaaaggaacagatagaagcaccagtggaagccacacttcgacaagtgaatcttcctctagtgaacctggtgtgccctctatacaacatgagagaaaactgctgagaccattgtctccgtggatcactgatatattgcttgctgcaccactagggattagaagcgattacttccgctggtgtggcggtgttatgggaaagtatgctgctggagatctcaagcccccatcaagtgctgcttctcatgggtctgggaagcatccaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="34546" stop="37325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34846" g_stop="34864" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34865" i_stop="34967" i_length="103">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34968" g_stop="35110" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="162" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35111" i_stop="35239" i_length="129">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35240" g_stop="35511" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="434" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35512" i_stop="36087" i_length="576">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36088" g_stop="36143" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="490" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36144" i_stop="36994" i_length="851">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36995" g_stop="37025" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="521" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E738276" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738276" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34846" e_stop="34864"/>
          <exon e_start="34968" e_stop="35110"/>
          <exon e_start="35240" e_stop="35511"/>
          <exon e_start="36088" e_stop="36143"/>
          <exon e_start="36995" e_stop="37025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTGATGATGTTTTAGGTATTCTTCTCACCTATTATTTAGCATTTACAGTATTGCTTCCACCTACTTGTGAGGATTGATTGAGTTGTTTCTATATTTTGTTGTTTGTTATAATTGCCAGCAACTTTTGTTCTTCATCACCCAGAGCATGGGCATGCTGTAGTTCATCCAATTATTTCATGCATCATTGATGGAACACTGGAGTATGATAAAAGTAGTCCACCTTTTGCTTCTTTTATATCACTGGTTTGCTCAAGCAGTGAGGTATGCAGATTCATTAAAAAATTAACTTAACTAATCTCATCATGCTTTTTTACTCTTATCATATTTTTGAAGCCCATCTTGAATATCATAATATGAGTCTCACTACTAATCATTAACCCTTTAACACAGAAGGAATATTCTGAACAATGGGCTCTTGCATGTGGAGAGATTTTACGTATCCTAACACACTACAACCGCCCGATTTTCAAAGTTGATCGTCAGGACAAAGGAACAGATAGAAGCACCAGTGGAAGCCACACTTCGACAAGTGAATCTTCCTCTAGTGAACCTGGTGTGCCCTCTATACAACATGAGAGAAAACTGCTGAGACCATTGTCTCCGTGGATCACTGATATATTGCTTGCTGCACCACTAGGGATTAGAAGCGATTACTTCCGCTGGTAAGCATCTCTCAATGTTGTTTGCAGGTTAGATGTTCCATTGCACTTAAAAATTCATTAAGAATATAGGAAAAATTCATTAGCATTCATTGATAGGAGTATTTTGTATCCTTTTTTCTTGTACTGGACAGTGGGCATTTGCATCTGGTTGTCTTGGTTTAGCACGTTGCCCATTGATTACTCAGGGAATGTTGGTTTGGGTTGTCTTAGAGTGTGTGTGTACTATTTCCCTTCAATTGCACCTTTCTTCGCTGAAGCCCCGGCCTTATCAATGCTTTGTGTGTAAAGCCGCTAATAGACTTCAGAATGCTTCTTTTTTTCTGAACTTTTCTCCTTTAGTAATACAGCTTCGAGTCCATTTGATTCCTTCAGAATTTTTCGAATGCTAGTTGACATTTATCCTCTTTTTGGTGCTCTTCAAATTAAAGAACTTCATTACTATTATTTTATTGACGTAGAATATTTTTCATTGAGATTCTCTAAATTGGTACTTGTAGAGATTGAGACTGATGAAAAAGGATAACCGGAAACTACACAATCCTGCTAACTGCTGTGAAATGTTTCATGCTTGTGCAGGTGTGGCGGTGTTATGGGAAAGTATGCTGCTGGAGATCTCAAGCCCCCATCAAGTGGTATGTGGACTTCTGTTTTATGAAATACTTGCTCCTGTCTATGGCTCTAGACCTTCACTTACAACTTTTAGTTTTTTAGCAACCTTAGTGCTATTCCCGTGGACATGGATAACATGCTTGAAAATCAGTGCAAAAAGTCTTCATGCTGGGTAAAAGTGGTAATAGATTAGTGTCCTCTAGTTACTTGCCCTATGATAGTCATCCTCTAGCTTGCGAAAATATTGCTCTGGGTTCATGTTTCTTACCAAGTCTTGCAAAAGAAATATAATCTTCCTTACGTTAACATTAGTTCCTTTTCTTTTTCTAGATTATGTTTCTTGAGAAGAATAAGAAAGAGGAACAGTTGTCCTTGACTGCCACTGCAATTTCCGCTAATTGTGATTATGTGAAAGAATCTAAGCATTCACCCTTAAATCCTTAAGTCACTGCGTGAAAAACTCCCAAGATATTTACAACACTTTGGAAGCCCTTACACAACTTACTTGAGAAAAATATATGGGTGAATAGTCAATACCTTTTTGCACATGTAAGATTCGTACATCAACTCTAGCATGGACTCACTAGTGGGTGAATCGGCTTACCAAAGGATGTCATACTATGTGAATCTGAGTAGAATAGCTAAAAACCTTAATAAATAATTTGGATGCTCTTACACAATCTATGTAGGAGAAGTAATATAACTCAATAGATAACATACATTTGCTTTGTTTCTCTTCATTTTCTTCCACTTGTCCCTCCTATTAGACACTGAGTTTCACAACTTTCTTGTAGAAGGCTAAGATATTAATTTAAAGTGTTTTCATATGTTAGAATCGCAACAGAATTGTTACTGACTTGAAAGTTTATTTTAGCTGCTTCTCATGGGTCTGGGAAGCATCCACA</genome_strand>
        <mrna_strand>CTTTTTGATGATGTTTTAG.......................................................................................................CAACTTTTGTTCTTCATCACCCAGAGCATGGGCATGCTGTAGTTCATCCAATTATTTCATGCATCATTGATGGAACACTGGAGTATGATAAAAGTAGTCCACCTTTTGCTTCTTTTATATCACTGGTTTGCTCAAGCAGTGAG.................................................................................................................................AAGGAATATTCTGAACAATGGGCTCTTGCATGTGGAGAGATTTTACGTATCCTAACACACTACAACCGCCCGATTTTCAAAGTTGATCGTCAGGACAAAGGAACAGATAGAAGCACCAGTGGAAGCCACACTTCGACAAGTGAATCTTCCTCTAGTGAACCTGGTGTGCCCTCTATACAACATGAGAGAAAACTGCTGAGACCATTGTCTCCGTGGATCACTGATATATTGCTTGCTGCACCACTAGGGATTAGAAGCGATTACTTCCGCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGCGGTGTTATGGGAAAGTATGCTGCTGGAGATCTCAAGCCCCCATCAAGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTTCTCATGGGTCTGGGAAGCATCCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E738375" ref_strand="+" ref_description="SGN-E738375 [LC13BF08]">
      <seq>ctttttgatgatgttttagcaacttttgttcttcatcacccagagcatgggcatgctgtagttcatccaattatttcatgcatcattgatggaacactggagtatgataaaagtagtccaccttttgcttcttttatatcactggtttgctcaagcagtgagaaggaatattctgaacaatgggctcttgcatgtggagagattttacgtatcctaacacactacaaccgcccgattttcaaagttgatcgtcaggacaaaggaacagatagaagcaccagtggaagccacacttcgacaagtgaatcttcctctagtgaacctggtgtgccctctatacaacatgagagaaaactgctgagaccattgtctccgtggatcactgatatattgcttgctgcaccactagggattagaagcgattacttccgctggtgtggcggtgttatgggaaagtatgctgctggagatctcaagcccccatcaagtgctgcttctcatgggtctgggaagcatccaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="34546" stop="37325"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34846" g_stop="34864" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34865" i_stop="34967" i_length="103">
            <donor d_prob="0.974" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34968" g_stop="35110" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="162" r_length="143" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="35111" i_stop="35239" i_length="129">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.830" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="35240" g_stop="35511" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="434" r_length="272" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="35512" i_stop="36087" i_length="576">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="36088" g_stop="36143" g_length="56"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="490" r_length="56" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="36144" i_stop="36994" i_length="851">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.854" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="36995" g_stop="37025" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="491" r_stop="521" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E738375" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>521</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E738375" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34846" e_stop="34864"/>
          <exon e_start="34968" e_stop="35110"/>
          <exon e_start="35240" e_stop="35511"/>
          <exon e_start="36088" e_stop="36143"/>
          <exon e_start="36995" e_stop="37025"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTGATGATGTTTTAGGTATTCTTCTCACCTATTATTTAGCATTTACAGTATTGCTTCCACCTACTTGTGAGGATTGATTGAGTTGTTTCTATATTTTGTTGTTTGTTATAATTGCCAGCAACTTTTGTTCTTCATCACCCAGAGCATGGGCATGCTGTAGTTCATCCAATTATTTCATGCATCATTGATGGAACACTGGAGTATGATAAAAGTAGTCCACCTTTTGCTTCTTTTATATCACTGGTTTGCTCAAGCAGTGAGGTATGCAGATTCATTAAAAAATTAACTTAACTAATCTCATCATGCTTTTTTACTCTTATCATATTTTTGAAGCCCATCTTGAATATCATAATATGAGTCTCACTACTAATCATTAACCCTTTAACACAGAAGGAATATTCTGAACAATGGGCTCTTGCATGTGGAGAGATTTTACGTATCCTAACACACTACAACCGCCCGATTTTCAAAGTTGATCGTCAGGACAAAGGAACAGATAGAAGCACCAGTGGAAGCCACACTTCGACAAGTGAATCTTCCTCTAGTGAACCTGGTGTGCCCTCTATACAACATGAGAGAAAACTGCTGAGACCATTGTCTCCGTGGATCACTGATATATTGCTTGCTGCACCACTAGGGATTAGAAGCGATTACTTCCGCTGGTAAGCATCTCTCAATGTTGTTTGCAGGTTAGATGTTCCATTGCACTTAAAAATTCATTAAGAATATAGGAAAAATTCATTAGCATTCATTGATAGGAGTATTTTGTATCCTTTTTTCTTGTACTGGACAGTGGGCATTTGCATCTGGTTGTCTTGGTTTAGCACGTTGCCCATTGATTACTCAGGGAATGTTGGTTTGGGTTGTCTTAGAGTGTGTGTGTACTATTTCCCTTCAATTGCACCTTTCTTCGCTGAAGCCCCGGCCTTATCAATGCTTTGTGTGTAAAGCCGCTAATAGACTTCAGAATGCTTCTTTTTTTCTGAACTTTTCTCCTTTAGTAATACAGCTTCGAGTCCATTTGATTCCTTCAGAATTTTTCGAATGCTAGTTGACATTTATCCTCTTTTTGGTGCTCTTCAAATTAAAGAACTTCATTACTATTATTTTATTGACGTAGAATATTTTTCATTGAGATTCTCTAAATTGGTACTTGTAGAGATTGAGACTGATGAAAAAGGATAACCGGAAACTACACAATCCTGCTAACTGCTGTGAAATGTTTCATGCTTGTGCAGGTGTGGCGGTGTTATGGGAAAGTATGCTGCTGGAGATCTCAAGCCCCCATCAAGTGGTATGTGGACTTCTGTTTTATGAAATACTTGCTCCTGTCTATGGCTCTAGACCTTCACTTACAACTTTTAGTTTTTTAGCAACCTTAGTGCTATTCCCGTGGACATGGATAACATGCTTGAAAATCAGTGCAAAAAGTCTTCATGCTGGGTAAAAGTGGTAATAGATTAGTGTCCTCTAGTTACTTGCCCTATGATAGTCATCCTCTAGCTTGCGAAAATATTGCTCTGGGTTCATGTTTCTTACCAAGTCTTGCAAAAGAAATATAATCTTCCTTACGTTAACATTAGTTCCTTTTCTTTTTCTAGATTATGTTTCTTGAGAAGAATAAGAAAGAGGAACAGTTGTCCTTGACTGCCACTGCAATTTCCGCTAATTGTGATTATGTGAAAGAATCTAAGCATTCACCCTTAAATCCTTAAGTCACTGCGTGAAAAACTCCCAAGATATTTACAACACTTTGGAAGCCCTTACACAACTTACTTGAGAAAAATATATGGGTGAATAGTCAATACCTTTTTGCACATGTAAGATTCGTACATCAACTCTAGCATGGACTCACTAGTGGGTGAATCGGCTTACCAAAGGATGTCATACTATGTGAATCTGAGTAGAATAGCTAAAAACCTTAATAAATAATTTGGATGCTCTTACACAATCTATGTAGGAGAAGTAATATAACTCAATAGATAACATACATTTGCTTTGTTTCTCTTCATTTTCTTCCACTTGTCCCTCCTATTAGACACTGAGTTTCACAACTTTCTTGTAGAAGGCTAAGATATTAATTTAAAGTGTTTTCATATGTTAGAATCGCAACAGAATTGTTACTGACTTGAAAGTTTATTTTAGCTGCTTCTCATGGGTCTGGGAAGCATCCACA</genome_strand>
        <mrna_strand>CTTTTTGATGATGTTTTAG.......................................................................................................CAACTTTTGTTCTTCATCACCCAGAGCATGGGCATGCTGTAGTTCATCCAATTATTTCATGCATCATTGATGGAACACTGGAGTATGATAAAAGTAGTCCACCTTTTGCTTCTTTTATATCACTGGTTTGCTCAAGCAGTGAG.................................................................................................................................AAGGAATATTCTGAACAATGGGCTCTTGCATGTGGAGAGATTTTACGTATCCTAACACACTACAACCGCCCGATTTTCAAAGTTGATCGTCAGGACAAAGGAACAGATAGAAGCACCAGTGGAAGCCACACTTCGACAAGTGAATCTTCCTCTAGTGAACCTGGTGTGCCCTCTATACAACATGAGAGAAAACTGCTGAGACCATTGTCTCCGTGGATCACTGATATATTGCTTGCTGCACCACTAGGGATTAGAAGCGATTACTTCCGCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGGCGGTGTTATGGGAAAGTATGCTGCTGGAGATCTCAAGCCCCCATCAAGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTTCTCATGGGTCTGGGAAGCATCCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E329811" ref_strand="+" ref_description="SGN-E329811 [cTOD-3-B5]">
      <seq>tcgcaactccaagtgccacacagaggcttcttgttggacttttagaagctccaccatcttgggctccagatgcacttgatgctgcggtacaactagtggaacttctgcgagcagctgaggattatgcatctggtctgcgtcttcctaggaattggatgcacttgcatttcttgcgtgcaattggaattgccatgtccatgagagcaggaattgctgcagattctgcagcagctttacttttccgagtactttctcaacctgctttgcttttcccccccttgaggcaaattgaagaaattgaaattctgggtggcgacacttcatgtaataaaaagcagagagaagtgactgctgcagaagccacagtagaagccactgcccaagggattgcatcaatgctttgtgctcatggtccggaggttgaatggagaatatgtaccatctgggaagctgcttatggattgattcctttaagttcatctgcagttgatctccctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="37025" stop="39833"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37325" g_stop="37464" g_length="140"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="140" r_length="140" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37465" i_stop="39056" i_length="1592">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.256" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39057" g_stop="39254" g_length="198"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="338" r_length="198" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="39255" i_stop="39373" i_length="119">
            <donor d_prob="0.974" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39374" g_stop="39533" g_length="160"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="498" r_length="160" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E329811" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37325" e_stop="37464"/>
          <exon e_start="39057" e_stop="39254"/>
          <exon e_start="39374" e_stop="39533"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGCAACTCCAAGTGCCACACAGAGGCTTCTTGTTGGACTTTTAGAAGCTCCACCATCTTGGGCTCCAGATGCACTTGATGCTGCGGTACAACTAGTGGAACTTCTGCGAGCAGCTGAGGATTATGCATCTGGTCTGCGTGTAAGTTTAAAAATTTTCTGTCAAAGTATTGTGATATTTGAGCATCAATCTGCTATACGTCGGAACATATTAGCAATTTATATTCATTCTCTGTTTTCTTTGTGGTTCTTTATACAACTGTAAGGTTATACTTTTTTAACCATCTATACTATGTTGGAACACACAGATAGAATTGTTCTGTATGAATTTTATATAAACTTGCCCCAAACTACTATGTTTTCTTGTCCGAAAGGAGCATATCTGTAGACATGTAGACATAAAGAATTCACTGTTTGCAGTCTTGATATATAGCCAATTCCTGTATGTTAAATTGTCTTAGTTGCCTCTCTAAGAGCTTAAGTTGTCAGCAACGGACATTTTTGTTTTATTACTTACATTCTACAACCTGGTCCTTCGTTTGTTGGTCTGATTTTCATTTTACCAATTTAGGAATTTTTTGGGCTTTTTCCAATTTTGTCCCGTAGGCCAAAATTAACTACAGACGCTAGCCGAAATATACAAAAACTAATTATGTATATTTCTAATCAAAGTACCCAAAACCGGTTGACCAGATCGGGTACGGATCCCACACCCACACCCATGTCATGTCGACACTGGTGCGGCACCAAAAGTGAAGAGTCCGAGCAACTTAATTTTTACTTAATACACAAAGCTTATACATTTGCTGACTATTTTGTAAATTGGATCACCGAAAGACATTTGACTGTAATTATCTCTTGTTTTTTATTGCTGATGGTGATAATATTAGACATGTGTCTAACTGAAGCGGCATAAATAGTGAGGATTCACATAGCTGATTCCAACTAGCTTGGGTTTAAGGCATAGTTGTTATTGTTGGTGGCGGTACCTTGATTGTTGAACTAAGTTGCTCTTCATACTCTAGTACCATGTTGAAACAGTTTTATCTAAAATGAAGTGTTTAAACTGCCGGAGGGGTATAATTTAATTATACTACAAATAATATATGTGAGATATGAAAGAAGATTTTGACCAAATGCACGAGGAGAGTGTCTTACACGTAGGGTTTATATAAACATGTACAAGGTATTCTGTAAGACTATAGTCCAAGTTAGCACACCTCTAATCTTCCATGTGCCTGTTATTTATGATACCTTCTGTCAAGTTAGTGCCAAGCTTTTTACATATGAAACTAGTTCAGGGATGAGCAAGAGGTTTGATCACGATTTCTGGTAGGAGTGATTCTATATGATAAATCTCTTAAATATAGATTTCTAGTCAGTAGAATATAGAGAGGATTTCTAGTTTCAGAGAGACTGTTATTAGAATGGAATGGTCCTAAATGTACCAAATTGATACTGAGAATCAACATAGCCAACCCCGACTAGTTTGGAATTGAAGCATATAGTTCTTATTGAGTTGTTTTGTTGTAGTGAACTTCTGTCGCTTTCAGCTATCCTTGAAATCCTTTGTATAAACTATGATCTCTGAATTGTTCTCCGCAAAAATGTATTTAATTATTAAAGAACTTGATTGGTTGTGTTGCTTGAGTACACCTTTCTATCCTACATTAGTGGAATTTTTTCTTTTAGCTTCTTTTGGTAGAATTCCTAACATTTTATGTATTGCCAAAGCTTCCTAGGAATTGGATGCACTTGCATTTCTTGCGTGCAATTGGAATTGCCATGTCCATGAGAGCAGGAATTGCTGCAGATTCTGCAGCAGCTTTACTTTTCCGAGTACTTTCTCAACCTGCTTTGCTTTTCCCCCCCTTGAGGCAAATTGAAGAAATTGAAATTCTGGGTGGCGACACTTCATGTAATAAAAAGCAGGTACATCCGTCAGTTATGATTGTTGAGTTTATCTATGTGCTAGTTCTTTCTGTGGATTTCTTCTTTTATTTGGATATATATGTTTGGCGTATGTGATTACCATTTTTATTATTCTTCAGAGAGAAGTGACTGCTGCAGAAGCCACAGTAGAAGCCACTGCCCAAGGGATTGCATCAATGCTTTGTGCTCATGGTCCGGAGGTTGAATGGAGAATATGTACCATCTGGGAAGCTGCTTATGGATTGATTCCTTTAAGTTCATCTGCAGTTGATCTCCCTG</genome_strand>
        <mrna_strand>TCGCAACTCCAAGTGCCACACAGAGGCTTCTTGTTGGACTTTTAGAAGCTCCACCATCTTGGGCTCCAGATGCACTTGATGCTGCGGTACAACTAGTGGAACTTCTGCGAGCAGCTGAGGATTATGCATCTGGTCTGCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCTAGGAATTGGATGCACTTGCATTTCTTGCGTGCAATTGGAATTGCCATGTCCATGAGAGCAGGAATTGCTGCAGATTCTGCAGCAGCTTTACTTTTCCGAGTACTTTCTCAACCTGCTTTGCTTTTCCCCCCCTTGAGGCAAATTGAAGAAATTGAAATTCTGGGTGGCGACACTTCATGTAATAAAAAGCAG.......................................................................................................................AGAGAAGTGACTGCTGCAGAAGCCACAGTAGAAGCCACTGCCCAAGGGATTGCATCAATGCTTTGTGCTCATGGTCCGGAGGTTGAATGGAGAATATGTACCATCTGGGAAGCTGCTTATGGATTGATTCCTTTAAGTTCATCTGCAGTTGATCTCCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E249766" ref_strand="+" ref_description="SGN-E249766 [cLEF-57-M22]">
      <seq>ttgagtatcttcctcgtgggagcccatctgaaacttgtcttatgaaaatatttgttgcgaccgtcgaagcaattcttcagagaacgttcccgcctgattcctctagagaagaaaccagaaaaaccagatatatttttggctctgccttaaaaaatcttgctgtggcagaactgcgaaccatggttcattcattgttcttggagtcgtgtgcctctgttgagcttgcatctcgactactttttgttatcttaacagtatgtgtcagtcatgaagcaaaaccaaatgggaataaaaggcctaaaggtgaagatactcactcacctagtgaaatcggggtagacactcaggcaaccattggaaaacaaagaccaatagggagtaagaaagtgaaaaaacaagggcctgttgcagcatttgattcttatgtccttgcttctgtctgtggactttcttgcgagcttcagctcttcagtatgatttcaagagggcctaattatccagatccaaaaatcatcatggatgaagccaagcctgcaagtgattcatctactgagctacgaaatgggattcattc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="39306" stop="40479"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39606" g_stop="40179" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="574" r_length="574" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E249766" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249766" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39606" e_stop="40179"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGAGTATCTTCCTCGTGGGAGCCCATCTGAAACTTGTCTTATGAAAATATTTGTTGCGACCGTCGAAGCAATTCTTCAGAGAACGTTCCCGCCTGATTCCTCTAGAGAAGAAACCAGAAAAACCAGATATATTTTTGGCTCTGCCTTAAAAAATCTTGCTGTGGCAGAACTGCGAACCATGGTTCATTCATTGTTCTTGGAGTCGTGTGCCTCTGTTGAGCTTGCATCTCGACTACTTTTTGTTATCTTAACAGTATGTGTCAGTCATGAAGCAAAACCAAATGGGAATAAAAGGCCTAAAGGTGAAGATACTCACTCACCTAGTGAAATCGGGGTAGACACTCAGGCAACCATTGGAAAACAAAGACCAATAGGGAGTAAGAAAGTGAAAAAACAAGGGCCTGTTGCAGCATTTGATTCTTATGTCCTTGCTTCTGTCTGTGGACTTTCTTGCGAGCTTCAGCTCTTCAGTATGATTTCAAGAGGGCCTAATTATCCAGATCCAAAAATCATCATGGATGAAGCCAAGCCTGCAAGTGATTCATCTACTGAGCTACGAAATGGGATTCATTC</genome_strand>
        <mrna_strand>TTGAGTATCTTCCTCGTGGGAGCCCATCTGAAACTTGTCTTATGAAAATATTTGTTGCGACCGTCGAAGCAATTCTTCAGAGAACGTTCCCGCCTGATTCCTCTAGAGAAGAAACCAGAAAAACCAGATATATTTTTGGCTCTGCCTTAAAAAATCTTGCTGTGGCAGAACTGCGAACCATGGTTCATTCATTGTTCTTGGAGTCGTGTGCCTCTGTTGAGCTTGCATCTCGACTACTTTTTGTTATCTTAACAGTATGTGTCAGTCATGAAGCAAAACCAAATGGGAATAAAAGGCCTAAAGGTGAAGATACTCACTCACCTAGTGAAATCGGGGTAGACACTCAGGCAACCATTGGAAAACAAAGACCAATAGGGAGTAAGAAAGTGAAAAAACAAGGGCCTGTTGCAGCATTTGATTCTTATGTCCTTGCTTCTGTCTGTGGACTTTCTTGCGAGCTTCAGCTCTTCAGTATGATTTCAAGAGGGCCTAATTATCCAGATCCAAAAATCATCATGGATGAAGCCAAGCCTGCAAGTGATTCATCTACTGAGCTACGAAATGGGATTCATTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E315524" ref_strand="+" ref_description="SGN-E315524 [cTOA-22-A15]">
      <seq>ggaataaaaggcctaaaggtgaagatactcactcacctagtgaaatcggggtagacactcaggcaaccattggaaaacaaagaccaatagggagtaagaaagtgaaaaaacaagggcctgttgcagcatttgattcttatgtccttgcttctgtctgtggactttcttgcgagcttcagctcttcagtatgatttcaagagggcctaattatccagatccaaaaatcatcatggatgaagccaagcctgcaagtgattcatctactgagctacgaaatgggattcattctgccgtctctcatactcggaggatgttggaaattttagaggcacttttttctcttaaaccatcttctgttggaacctcatggagcttcagctcaaatgagatagttgctgcagctatggtagctgctcatatttctgatctttttaaacgctccaaggcctgcatgcactctctttcttctttgatacggtgcaagtgggataatgaaattcattccagggcatcgtcaatttataacctaattgatattcatagcaaaactgttgcatcaattgtcaacaaggctgaaccattggaagcttatctaatacatgtaccacttctgaaggagcgacctagatgcttgaatgggaaaaagcattataaatacacaagtcgtaattgcttaacatcagaacaacatcaggacctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="39591" stop="40893"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39891" g_stop="40593" g_length="703"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="702" r_length="702" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E315524" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E315524" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39891" e_stop="40593"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAATAAAAGGCCTAAAGGTGAAGATACTCACTCACCTAGTGAAATCGGGGTAGACACTCAGGCAACCATTGGAAAACAAAGACCAATAGGGAGTAAGAAAGTGAAAAAACAAGGGCCTGTTGCAGCATTTGATTCTTATGTCCTTGCTTCTGTCTGTGGACTTTCTTGCGAGCTTCAGCTCTTCAGTATGATTTCAAGAGGGCCTAATTATCCAGATCCAAAAATCATCATGGATGAAGCCAAGCCTGCAAGTGATTCATCTACTGAGCTACGAAATGGGATTCATTCTGCCGTCTCTCATACTCGGAGGATGTTGGAAATTTTAGAGGCACTTTTTTCTCTTAAACCATCTTCTGTTGGAACCTCATGGAGCTTCAGCTCAAATGAGATAGTTGCTGCAGCTATGGTAGCTGCTCATATTTCTGATCTTTTTAAACGCTCCAAGGCCTGCATGCACTCTCTTTCTTCTTTGATACGGTGCAAGTGGGATAATGAAATTCATTCCAGGGCATCGTCAATTTATAACCTAATTGATATTCATAGCAAAACTGTTGCATCAATTGTCAACAAGGCTGAACCATTGGAAGCTTATCTAATACATGTACCACTTCTGAAGGAGCGACCTAGATGCTTGAATGGGAAAAAGCATTATAAATACACAAGTCGTAATTGCTTAACATCAGAACAACCATCAGGACCTCT</genome_strand>
        <mrna_strand>GGAATAAAAGGCCTAAAGGTGAAGATACTCACTCACCTAGTGAAATCGGGGTAGACACTCAGGCAACCATTGGAAAACAAAGACCAATAGGGAGTAAGAAAGTGAAAAAACAAGGGCCTGTTGCAGCATTTGATTCTTATGTCCTTGCTTCTGTCTGTGGACTTTCTTGCGAGCTTCAGCTCTTCAGTATGATTTCAAGAGGGCCTAATTATCCAGATCCAAAAATCATCATGGATGAAGCCAAGCCTGCAAGTGATTCATCTACTGAGCTACGAAATGGGATTCATTCTGCCGTCTCTCATACTCGGAGGATGTTGGAAATTTTAGAGGCACTTTTTTCTCTTAAACCATCTTCTGTTGGAACCTCATGGAGCTTCAGCTCAAATGAGATAGTTGCTGCAGCTATGGTAGCTGCTCATATTTCTGATCTTTTTAAACGCTCCAAGGCCTGCATGCACTCTCTTTCTTCTTTGATACGGTGCAAGTGGGATAATGAAATTCATTCCAGGGCATCGTCAATTTATAACCTAATTGATATTCATAGCAAAACTGTTGCATCAATTGTCAACAAGGCTGAACCATTGGAAGCTTATCTAATACATGTACCACTTCTGAAGGAGCGACCTAGATGCTTGAATGGGAAAAAGCATTATAAATACACAAGTCGTAATTGCTTAACATCAGAACAA-CATCAGGACCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E204672" ref_strand="+" ref_description="SGN-E204672 [cLEC-14-D5]">
      <seq>aagaaagtgaaaaaacaagggcctgttgcagcatttgattcttatgtccttgcttctgtctgtggactttcttgcgagcttcagctcttcagtatgatttcaagagggcctaattatccagatccaaaaatcatcatggatgaagccaagcctgcaagtgattcatctactgagctacgaaatgggattcattctgccgtctctcatactcggaggatgttggaaattttagaggcacttttttctcttaaaccatcttctgttggaacctcatggagcttcagctcaaatgagatagttgctgcagctatggtagctgctcatatttctgatctttttaaacgctccaaggcctgcatgcactctctttcttctttgatacggtgcaagtgggataatgaaattcattccagggcatcgtcaatttataacctaattgatattcatagcaaaactgttgcatcaattgtcaacaaggctgaaccattggaagcttatctaatacatgtaccact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="39686" stop="40800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39986" g_stop="40500" g_length="515"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E204672" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>515</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E204672" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39986" e_stop="40500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAAAGTGAAAAAACAAGGGCCTGTTGCAGCATTTGATTCTTATGTCCTTGCTTCTGTCTGTGGACTTTCTTGCGAGCTTCAGCTCTTCAGTATGATTTCAAGAGGGCCTAATTATCCAGATCCAAAAATCATCATGGATGAAGCCAAGCCTGCAAGTGATTCATCTACTGAGCTACGAAATGGGATTCATTCTGCCGTCTCTCATACTCGGAGGATGTTGGAAATTTTAGAGGCACTTTTTTCTCTTAAACCATCTTCTGTTGGAACCTCATGGAGCTTCAGCTCAAATGAGATAGTTGCTGCAGCTATGGTAGCTGCTCATATTTCTGATCTTTTTAAACGCTCCAAGGCCTGCATGCACTCTCTTTCTTCTTTGATACGGTGCAAGTGGGATAATGAAATTCATTCCAGGGCATCGTCAATTTATAACCTAATTGATATTCATAGCAAAACTGTTGCATCAATTGTCAACAAGGCTGAACCATTGGAAGCTTATCTAATACATGTACCACT</genome_strand>
        <mrna_strand>AAGAAAGTGAAAAAACAAGGGCCTGTTGCAGCATTTGATTCTTATGTCCTTGCTTCTGTCTGTGGACTTTCTTGCGAGCTTCAGCTCTTCAGTATGATTTCAAGAGGGCCTAATTATCCAGATCCAAAAATCATCATGGATGAAGCCAAGCCTGCAAGTGATTCATCTACTGAGCTACGAAATGGGATTCATTCTGCCGTCTCTCATACTCGGAGGATGTTGGAAATTTTAGAGGCACTTTTTTCTCTTAAACCATCTTCTGTTGGAACCTCATGGAGCTTCAGCTCAAATGAGATAGTTGCTGCAGCTATGGTAGCTGCTCATATTTCTGATCTTTTTAAACGCTCCAAGGCCTGCATGCACTCTCTTTCTTCTTTGATACGGTGCAAGTGGGATAATGAAATTCATTCCAGGGCATCGTCAATTTATAACCTAATTGATATTCATAGCAAAACTGTTGCATCAATTGTCAACAAGGCTGAACCATTGGAAGCTTATCTAATACATGTACCACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E214133" ref_strand="+" ref_description="SGN-E214133 [cLEC-80-H16]">
      <seq>ttcttatgtccttgcttctgtctgtggactttcttgcgagcttcagctcttcagtatgatttcaagagggcctaattatccagatccaaaaatcatcatggatgaagccaagcctgcaagtgattcatctactgagctacgaaatgggattcattctgccgtctctcatactcggaggatgttggaaattttagaggcacttttttctcttaaaccatcttctgttggaacctcatggagcttcagctcaaatgagatagttgctgcagctatggtagctgctcatatttctgatctttttaaacgctccaaggcctgcatgcactctctttcttctttgatacggtgcaagtgggataatgaaattcattccagggcatcgtcaatttataacctaattgatattcatagcaaaactgttgcatcaattgtcaacaaggctgaaccattggaagcttatctaatacatgtaccacttctgaaggagcgacctagatgcttgaatgggaaaaagcattataaatacacaagtcgtaattgcttaacatcagaacaaccatcaggacctctgtgtnaagattcgtatgatcgtagaagttcacttgtgtgtgagaaagcttcagactcaagttcacactctagtgagcttgctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="39724" stop="40977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40024" g_stop="40677" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E214133" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40024" e_stop="40677"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTATGTCCTTGCTTCTGTCTGTGGACTTTCTTGCGAGCTTCAGCTCTTCAGTATGATTTCAAGAGGGCCTAATTATCCAGATCCAAAAATCATCATGGATGAAGCCAAGCCTGCAAGTGATTCATCTACTGAGCTACGAAATGGGATTCATTCTGCCGTCTCTCATACTCGGAGGATGTTGGAAATTTTAGAGGCACTTTTTTCTCTTAAACCATCTTCTGTTGGAACCTCATGGAGCTTCAGCTCAAATGAGATAGTTGCTGCAGCTATGGTAGCTGCTCATATTTCTGATCTTTTTAAACGCTCCAAGGCCTGCATGCACTCTCTTTCTTCTTTGATACGGTGCAAGTGGGATAATGAAATTCATTCCAGGGCATCGTCAATTTATAACCTAATTGATATTCATAGCAAAACTGTTGCATCAATTGTCAACAAGGCTGAACCATTGGAAGCTTATCTAATACATGTACCACTTCTGAAGGAGCGACCTAGATGCTTGAATGGGAAAAAGCATTATAAATACACAAGTCGTAATTGCTTAACATCAGAACAACCATCAGGACCTCTGTGTAAAGATTCGTATGATCGTAGAAGTTCACTTGTGTGTGAGAAAGCTTCAGACTCAAGTTCACACTCTAGTGAGCTTGCTGG</genome_strand>
        <mrna_strand>TTCTTATGTCCTTGCTTCTGTCTGTGGACTTTCTTGCGAGCTTCAGCTCTTCAGTATGATTTCAAGAGGGCCTAATTATCCAGATCCAAAAATCATCATGGATGAAGCCAAGCCTGCAAGTGATTCATCTACTGAGCTACGAAATGGGATTCATTCTGCCGTCTCTCATACTCGGAGGATGTTGGAAATTTTAGAGGCACTTTTTTCTCTTAAACCATCTTCTGTTGGAACCTCATGGAGCTTCAGCTCAAATGAGATAGTTGCTGCAGCTATGGTAGCTGCTCATATTTCTGATCTTTTTAAACGCTCCAAGGCCTGCATGCACTCTCTTTCTTCTTTGATACGGTGCAAGTGGGATAATGAAATTCATTCCAGGGCATCGTCAATTTATAACCTAATTGATATTCATAGCAAAACTGTTGCATCAATTGTCAACAAGGCTGAACCATTGGAAGCTTATCTAATACATGTACCACTTCTGAAGGAGCGACCTAGATGCTTGAATGGGAAAAAGCATTATAAATACACAAGTCGTAATTGCTTAACATCAGAACAACCATCAGGACCTCTGTGTNAAGATTCGTATGATCGTAGAAGTTCACTTGTGTGTGAGAAAGCTTCAGACTCAAGTTCACACTCTAGTGAGCTTGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E213016" ref_strand="+" ref_description="SGN-E213016 [cLEC-72-M22]">
      <seq>ttatgtccttgcttctgtctgtggactttcttgcgagcttcagctcttcagtatgatttcaagagggcctaattatccagatccaaaaatcatcatggatgaagccaagcctgcaagtgattcatctactgagctacgaaatgggattcattctgccgtctctcatactcggaggatgttggaaattttagaggcacttttttctcttaaaccatcttctgttggaacctcatggagcttcagctcaaatgagatagttgctgcagctatggtagctgctcatatttctgatctttttaaacgctccaaggcctgcatgcactctctttcttctttgatacggtgcaagtgggataatgaaattcattccagggcatcgtcaatttataacctaattgatattcatagcaaaactgttgcatcaattgtcaacaaggctgaaccattggaagcttatctaatacatgtaccacttctgaaggagcgacctagatgcttgaatgggaaaaagcattataaatacacaagtcgtaattgcttaacatcagaacaaccatcaggacctctgtgtaaagattcgtatgatcgtagaagttcacttgtgtgtgagaaagcttcagactcaagttcacactctagtgagcttgctgggtacacatcagcaaagtgtttgcaaatttctccttggatgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="39727" stop="41019"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40027" g_stop="40719" g_length="693"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E213016" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E213016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40027" e_stop="40719"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGTCCTTGCTTCTGTCTGTGGACTTTCTTGCGAGCTTCAGCTCTTCAGTATGATTTCAAGAGGGCCTAATTATCCAGATCCAAAAATCATCATGGATGAAGCCAAGCCTGCAAGTGATTCATCTACTGAGCTACGAAATGGGATTCATTCTGCCGTCTCTCATACTCGGAGGATGTTGGAAATTTTAGAGGCACTTTTTTCTCTTAAACCATCTTCTGTTGGAACCTCATGGAGCTTCAGCTCAAATGAGATAGTTGCTGCAGCTATGGTAGCTGCTCATATTTCTGATCTTTTTAAACGCTCCAAGGCCTGCATGCACTCTCTTTCTTCTTTGATACGGTGCAAGTGGGATAATGAAATTCATTCCAGGGCATCGTCAATTTATAACCTAATTGATATTCATAGCAAAACTGTTGCATCAATTGTCAACAAGGCTGAACCATTGGAAGCTTATCTAATACATGTACCACTTCTGAAGGAGCGACCTAGATGCTTGAATGGGAAAAAGCATTATAAATACACAAGTCGTAATTGCTTAACATCAGAACAACCATCAGGACCTCTGTGTAAAGATTCGTATGATCGTAGAAGTTCACTTGTGTGTGAGAAAGCTTCAGACTCAAGTTCACACTCTAGTGAGCTTGCTGGGTACACCATCAGCAAAGTGTTTGCAAATTTCTCCTTGGATGC</genome_strand>
        <mrna_strand>TTATGTCCTTGCTTCTGTCTGTGGACTTTCTTGCGAGCTTCAGCTCTTCAGTATGATTTCAAGAGGGCCTAATTATCCAGATCCAAAAATCATCATGGATGAAGCCAAGCCTGCAAGTGATTCATCTACTGAGCTACGAAATGGGATTCATTCTGCCGTCTCTCATACTCGGAGGATGTTGGAAATTTTAGAGGCACTTTTTTCTCTTAAACCATCTTCTGTTGGAACCTCATGGAGCTTCAGCTCAAATGAGATAGTTGCTGCAGCTATGGTAGCTGCTCATATTTCTGATCTTTTTAAACGCTCCAAGGCCTGCATGCACTCTCTTTCTTCTTTGATACGGTGCAAGTGGGATAATGAAATTCATTCCAGGGCATCGTCAATTTATAACCTAATTGATATTCATAGCAAAACTGTTGCATCAATTGTCAACAAGGCTGAACCATTGGAAGCTTATCTAATACATGTACCACTTCTGAAGGAGCGACCTAGATGCTTGAATGGGAAAAAGCATTATAAATACACAAGTCGTAATTGCTTAACATCAGAACAACCATCAGGACCTCTGTGTAAAGATTCGTATGATCGTAGAAGTTCACTTGTGTGTGAGAAAGCTTCAGACTCAAGTTCACACTCTAGTGAGCTTGCTGGGTACA-CATCAGCAAAGTGTTTGCAAATTTCTCCTTGGATGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E289154" ref_strand="+" ref_description="SGN-E289154 [cLES-18-L23]">
      <seq>ctctgtgtaaagattcgtatgatcgtagaagttcacttgtgtgtgagaaagcttcagactcaagttcacactctagtgagcttgctgggtacaccatcagcaaagtgtttgcaaatttctccttggatgctacagacttggccaattttcttacaaaggacaggcattttggatttaattgcaatgcacaagatcttttaaaatcagtgcttgcagacaaacaagaattgtgtttttctgttgtctcattgctctggcacaagttgattgcatcacctgaaacacaacccattgcagaaagcacttccgcccagcaaggatggagacaggtggttgatgcactatgcaatgttgtatcagcggcacctggaaaagctgcaacagcaattgttcttcaggctgagagggaattgcaaccatggattgctaaagatgatgaagttggtcagcaaatgtggagaattaaccaacgtatagtaaaattgatcgcagaactgataaggaatcatgatatagcggaatctttggtaattctggctagtaaccctgacctccttttacgggccacagatgggatgcttgtcgatggagaagcatgcaccttaccacagctagagcttttggaagtgacagctagagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="40290" stop="43538"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40590" g_stop="40918" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40919" i_stop="42248" i_length="1330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42249" g_stop="42317" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="398" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42318" i_stop="43013" i_length="696">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43014" g_stop="43232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="617" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43233" i_stop="43432" i_length="200">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43433" g_stop="43456" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="618" r_stop="641" r_length="24" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E289154" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E289154" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40590" e_stop="40918"/>
          <exon e_start="42249" e_stop="42317"/>
          <exon e_start="43014" e_stop="43232"/>
          <exon e_start="43433" e_stop="43456"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTGTAAAGATTCGTATGATCGTAGAAGTTCACTTGTGTGTGAGAAAGCTTCAGACTCAAGTTCACACTCTAGTGAGCTTGCTGGGTACACCATCAGCAAAGTGTTTGCAAATTTCTCCTTGGATGCTACAGACTTGGCCAATTTTCTTACAAAGGACAGGCATTTTGGATTTAATTGCAATGCACAAGATCTTTTAAAATCAGTGCTTGCAGACAAACAAGAATTGTGTTTTTCTGTTGTCTCATTGCTCTGGCACAAGTTGATTGCATCACCTGAAACACAACCCATTGCAGAAAGCACTTCCGCCCAGCAAGGATGGAGACAGGTACCTTCTTACTTTTTCATGTTAATCGCTGTTAATGAATTAATATTTCCTGTGGCATTTGTCTGGTAAGAAACAAGATTTCATCCTCAAATAAGAAGCAACATCCCTGATAACATATGCTATATGCAATGCCAATGACATAGCTTGGAATTTTCCGCAAGTGTTCCTGCTTGGAGCTTCGCTCAAAGTTTCAAAAGGTGGTTGGTCATTGGTTTTGGCGCCAAAGATGTGAAAACCATTTTTCATGTAGAATAAAAATCCCTCAAAACAACATTATTTGGTCACTCGCCTAATTTACCTCCTGAAACTTTTTTTAAAAAGAAAAATAACAGACGTTACCTCCCTCAAAACATGTTAAGCTCATGCCAAAGGAGACAGGAGAATGATATGGCCTTTACTTGTTTGATCATAAGTAGCACCAATCTCTTCTTCTATATAGGTTTCTCTATGAATATGAATTTGTTATCTCAAGCCATGCACTCGGCCACTGTAACATAGGGGTTCATATGAACCCAATAACTTTTGTATAGACCCTATATTTGTATTAGAATACCCAGTATGTGGACAGTTCAGTTGTAAAGAAGAGACAATCAAAGCTCTCTGATTCCCAAGATGTGGGTTCTCGGAACCCACTTGTGTTGGTTCTTTTTCTCTTTTAGTTATATTCCTGATTCTCTTTTTAGAAGAATCATGAACCCGCATCAGTTTTTTCCTTTTTGCTATATGCAAATTTCTTTTTAAAACTTTTTAAAAACAAACATAAGATTAACAAATGAAAAAAGCAAAAAGCATTTCCTCTCTAAAACGAAAGGAGAACATTGTTTCTTCCTCTTTTACACAAATGCAAACCCAAAATGTGATTTTCAATGAAAAGTTAGGGTTCATACTTTTAAATATATATATTGAACATTGGTACTCGTACCTCAGTTTGGTACTAGCTTGAGGTCGGTGTCCCAAATTCAAAACCCATAAACCTCAGATCCTGACTCCGTCTCCGCATGCACCCCATCCACAAAAACCATTTACGCCCAAAATAGCAGTAACTACCAACAACCTTAATTAGAACTGTATAGGCGGCATAATAAGCAAATCATTGTACTGTTTGAATGTAGGAGGTGAAAATGTTATGATGGCAGAAACTGAGTTTGTTAGATTGGGAGCCAAAATGAGAAAATGTTGCTTTTTACGATTATTATGCAGTGTTTTTGTGTGATAGCATGAAGAATGTCCATAATTAAGTTAGTCACATGTTGCTTTTGCATTATATATCTGCATACACAAGATACTTAGTAGCTTTTTATATGGTGCTAACAGTCTTCCATAACTACAGGTGGTTGATGCACTATGCAATGTTGTATCAGCGGCACCTGGAAAAGCTGCAACAGCAATTGTTCTTCAGGTCCAGATTTCGCTTTAACTGTATTTGGTCATTATAGATCATGATCATTTTTTGTTAGGCTGCAGCTAGTATGCACAGTTCATATTTATTTGGATCCAAATGGCTTAACAGATACACCTGCTATTTCAAATAATTACATTCTTTTCTAGGGAAAAGAAACAAGTCTATCCTTGTCCTATCCGAAATTGAGAAATTTTGCCCTCCAATGAACTTTTGGTCTAATATTACTGATGCATTAGGATAAAAAGTCTTTTTTTTCCTTAACTCCTAACAAAACGCCAAGGGTAATTTTAAACTAAAGTTGAAAGACAAGGGGTAAGCTTGGACCTTTTTTCACAAATAATTTGGACACATGGAGTCCACCTATTTCATGTTGGAGTTCCGTTAATTAAAAGAAAAAATATAGGATGATTTGCTTATGGCAAGGGTATTAATAACGGACCCAAATTGTATGGAGAAAAAATTGAGCAATTCCGAATAGTTTAGGGGCAATTTCTGGAAGTTTTCCCTTCTCTGTCATATTTTTGGCGTTATCACATGGCAAATACATTTATGTTTATGGTACAGTACCTTTCCGGTTCCAGGGTTTCTTAGACTTGCATGCATTAATAGTTATCATCGCTTTGCTTCTAGCTGTAAGTAGGTCTTCATCACAATATTTGTTTGGTCACTTTCTTGCCAAACTTTACTTGTCAGGCTGAGAGGGAATTGCAACCATGGATTGCTAAAGATGATGAAGTTGGTCAGCAAATGTGGAGAATTAACCAACGTATAGTAAAATTGATCGCAGAACTGATAAGGAATCATGATATAGCGGAATCTTTGGTAATTCTGGCTAGTAACCCTGACCTCCTTTTACGGGCCACAGATGGGATGCTTGTCGATGGAGAAGCATGCACCTTACCACAGCTAGAGGTAATGACATATTTAGATTTCTGGTTTAGAGGTAACATCTTTTATACTACTTATTTCTCACCTGATGAATCTATGATTCAGAAAGCTACGACTTCCTTTATTTTCGTGAGTACTTGAATAGATGATTGATTCATCATATTCAATATCTTCTGTATTTTCTGATATATTTACATCCTTGCCCCTTAAAAAAAATTGAGCAGCTTTTGGAAGTGACAGCTAGAGCA</genome_strand>
        <mrna_strand>CTCTGTGTAAAGATTCGTATGATCGTAGAAGTTCACTTGTGTGTGAGAAAGCTTCAGACTCAAGTTCACACTCTAGTGAGCTTGCTGGGTACACCATCAGCAAAGTGTTTGCAAATTTCTCCTTGGATGCTACAGACTTGGCCAATTTTCTTACAAAGGACAGGCATTTTGGATTTAATTGCAATGCACAAGATCTTTTAAAATCAGTGCTTGCAGACAAACAAGAATTGTGTTTTTCTGTTGTCTCATTGCTCTGGCACAAGTTGATTGCATCACCTGAAACACAACCCATTGCAGAAAGCACTTCCGCCCAGCAAGGATGGAGACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTGATGCACTATGCAATGTTGTATCAGCGGCACCTGGAAAAGCTGCAACAGCAATTGTTCTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAGGGAATTGCAACCATGGATTGCTAAAGATGATGAAGTTGGTCAGCAAATGTGGAGAATTAACCAACGTATAGTAAAATTGATCGCAGAACTGATAAGGAATCATGATATAGCGGAATCTTTGGTAATTCTGGCTAGTAACCCTGACCTCCTTTTACGGGCCACAGATGGGATGCTTGTCGATGGAGAAGCATGCACCTTACCACAGCTAGAG........................................................................................................................................................................................................CTTTTGGAAGTGACAGCTAGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E373740" ref_strand="+" ref_description="SGN-E373740 [TUS-31-C2]">
      <seq>ctctgtgtaaagattcgtatgatcgtagaagttcacttgtgtgtgagaaagcttcagactcaagttcacactctagtgagcttgctgggtacaccatcagcaaagtgtttgcaaatttctccttggatgctacagacttggccaattttcttacaaaggacaggcattctggatttaattgcaatgcacaagatcttttaaaatcagtgcttgcagacaaacaagaattgtgtttttctgttgtctcattgctctggcacaagttgattgcatcacctgaaacacaacccattgcagaatgcacttccgcccagcaaggatggagacaggtggttgatgcactatgcaatgttgtatcagcggcacctgcaaaagctgcaacagcaattgttcttcaggctgagagggaattgcaaccatggattgctaaagatgatgaagttggtcagcaaatgtggagaattaaccaacgtatagtaaaattgatcgcagaactgataaggaatcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="40290" stop="43424"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40590" g_stop="40918" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40919" i_stop="42248" i_length="1330">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42249" g_stop="42317" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="398" r_length="69" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42318" i_stop="43013" i_length="696">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43014" g_stop="43124" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="509" r_length="111" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E373740" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373740" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40590" e_stop="40918"/>
          <exon e_start="42249" e_stop="42317"/>
          <exon e_start="43014" e_stop="43124"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGTGTAAAGATTCGTATGATCGTAGAAGTTCACTTGTGTGTGAGAAAGCTTCAGACTCAAGTTCACACTCTAGTGAGCTTGCTGGGTACACCATCAGCAAAGTGTTTGCAAATTTCTCCTTGGATGCTACAGACTTGGCCAATTTTCTTACAAAGGACAGGCATTTTGGATTTAATTGCAATGCACAAGATCTTTTAAAATCAGTGCTTGCAGACAAACAAGAATTGTGTTTTTCTGTTGTCTCATTGCTCTGGCACAAGTTGATTGCATCACCTGAAACACAACCCATTGCAGAAAGCACTTCCGCCCAGCAAGGATGGAGACAGGTACCTTCTTACTTTTTCATGTTAATCGCTGTTAATGAATTAATATTTCCTGTGGCATTTGTCTGGTAAGAAACAAGATTTCATCCTCAAATAAGAAGCAACATCCCTGATAACATATGCTATATGCAATGCCAATGACATAGCTTGGAATTTTCCGCAAGTGTTCCTGCTTGGAGCTTCGCTCAAAGTTTCAAAAGGTGGTTGGTCATTGGTTTTGGCGCCAAAGATGTGAAAACCATTTTTCATGTAGAATAAAAATCCCTCAAAACAACATTATTTGGTCACTCGCCTAATTTACCTCCTGAAACTTTTTTTAAAAAGAAAAATAACAGACGTTACCTCCCTCAAAACATGTTAAGCTCATGCCAAAGGAGACAGGAGAATGATATGGCCTTTACTTGTTTGATCATAAGTAGCACCAATCTCTTCTTCTATATAGGTTTCTCTATGAATATGAATTTGTTATCTCAAGCCATGCACTCGGCCACTGTAACATAGGGGTTCATATGAACCCAATAACTTTTGTATAGACCCTATATTTGTATTAGAATACCCAGTATGTGGACAGTTCAGTTGTAAAGAAGAGACAATCAAAGCTCTCTGATTCCCAAGATGTGGGTTCTCGGAACCCACTTGTGTTGGTTCTTTTTCTCTTTTAGTTATATTCCTGATTCTCTTTTTAGAAGAATCATGAACCCGCATCAGTTTTTTCCTTTTTGCTATATGCAAATTTCTTTTTAAAACTTTTTAAAAACAAACATAAGATTAACAAATGAAAAAAGCAAAAAGCATTTCCTCTCTAAAACGAAAGGAGAACATTGTTTCTTCCTCTTTTACACAAATGCAAACCCAAAATGTGATTTTCAATGAAAAGTTAGGGTTCATACTTTTAAATATATATATTGAACATTGGTACTCGTACCTCAGTTTGGTACTAGCTTGAGGTCGGTGTCCCAAATTCAAAACCCATAAACCTCAGATCCTGACTCCGTCTCCGCATGCACCCCATCCACAAAAACCATTTACGCCCAAAATAGCAGTAACTACCAACAACCTTAATTAGAACTGTATAGGCGGCATAATAAGCAAATCATTGTACTGTTTGAATGTAGGAGGTGAAAATGTTATGATGGCAGAAACTGAGTTTGTTAGATTGGGAGCCAAAATGAGAAAATGTTGCTTTTTACGATTATTATGCAGTGTTTTTGTGTGATAGCATGAAGAATGTCCATAATTAAGTTAGTCACATGTTGCTTTTGCATTATATATCTGCATACACAAGATACTTAGTAGCTTTTTATATGGTGCTAACAGTCTTCCATAACTACAGGTGGTTGATGCACTATGCAATGTTGTATCAGCGGCACCTGGAAAAGCTGCAACAGCAATTGTTCTTCAGGTCCAGATTTCGCTTTAACTGTATTTGGTCATTATAGATCATGATCATTTTTTGTTAGGCTGCAGCTAGTATGCACAGTTCATATTTATTTGGATCCAAATGGCTTAACAGATACACCTGCTATTTCAAATAATTACATTCTTTTCTAGGGAAAAGAAACAAGTCTATCCTTGTCCTATCCGAAATTGAGAAATTTTGCCCTCCAATGAACTTTTGGTCTAATATTACTGATGCATTAGGATAAAAAGTCTTTTTTTTCCTTAACTCCTAACAAAACGCCAAGGGTAATTTTAAACTAAAGTTGAAAGACAAGGGGTAAGCTTGGACCTTTTTTCACAAATAATTTGGACACATGGAGTCCACCTATTTCATGTTGGAGTTCCGTTAATTAAAAGAAAAAATATAGGATGATTTGCTTATGGCAAGGGTATTAATAACGGACCCAAATTGTATGGAGAAAAAATTGAGCAATTCCGAATAGTTTAGGGGCAATTTCTGGAAGTTTTCCCTTCTCTGTCATATTTTTGGCGTTATCACATGGCAAATACATTTATGTTTATGGTACAGTACCTTTCCGGTTCCAGGGTTTCTTAGACTTGCATGCATTAATAGTTATCATCGCTTTGCTTCTAGCTGTAAGTAGGTCTTCATCACAATATTTGTTTGGTCACTTTCTTGCCAAACTTTACTTGTCAGGCTGAGAGGGAATTGCAACCATGGATTGCTAAAGATGATGAAGTTGGTCAGCAAATGTGGAGAATTAACCAACGTATAGTAAAATTGATCGCAGAACTGATAAGGAATCAT</genome_strand>
        <mrna_strand>CTCTGTGTAAAGATTCGTATGATCGTAGAAGTTCACTTGTGTGTGAGAAAGCTTCAGACTCAAGTTCACACTCTAGTGAGCTTGCTGGGTACACCATCAGCAAAGTGTTTGCAAATTTCTCCTTGGATGCTACAGACTTGGCCAATTTTCTTACAAAGGACAGGCATTCTGGATTTAATTGCAATGCACAAGATCTTTTAAAATCAGTGCTTGCAGACAAACAAGAATTGTGTTTTTCTGTTGTCTCATTGCTCTGGCACAAGTTGATTGCATCACCTGAAACACAACCCATTGCAGAATGCACTTCCGCCCAGCAAGGATGGAGACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTGATGCACTATGCAATGTTGTATCAGCGGCACCTGCAAAAGCTGCAACAGCAATTGTTCTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAGGGAATTGCAACCATGGATTGCTAAAGATGATGAAGTTGGTCAGCAAATGTGGAGAATTAACCAACGTATAGTAAAATTGATCGCAGAACTGATAAGGAATCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E200736" ref_strand="+" ref_description="SGN-E200736 [cLEC-9-I21]">
      <seq>cattttggatttaattgcaatgcacaagatcttttaaaatcagtgcttgcagacaaacaagaattgtgtttttctgttgtctcattgctctggcacaagttgattgcatcacctgaaacacaacccattgcagaaagcacttccgcccagcaaggatggagacaggtggttgatgcactatgcaatgttgtatcagcggcacctggaaaagctgcaacagcaattgttcttcaggctgagagggaattgcaaccatggattgctaaagatgatgaagttggtcagcaaatgtggagaattaaccaacgtatagtaaaattgatcgcagaactgataaggaatcatgatatagcggaatctttggtaattctggctagtaaccctgacctccttttacgggccacagatgggatgcttgtcgatggagaagcatgcaccttaccacagctagagcttttggaagtgacagctagagcaattcaaccagtacttgactggggagaatctggacaatcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="40454" stop="43796"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40754" g_stop="40918" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40919" i_stop="42248" i_length="1330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42249" g_stop="42317" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="234" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42318" i_stop="43013" i_length="696">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="43014" g_stop="43232" g_length="219"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="453" r_length="219" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="43233" i_stop="43432" i_length="200">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="43433" g_stop="43496" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="454" r_stop="517" r_length="64" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E200736" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>517</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E200736" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40754" e_stop="40918"/>
          <exon e_start="42249" e_stop="42317"/>
          <exon e_start="43014" e_stop="43232"/>
          <exon e_start="43433" e_stop="43496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTGGATTTAATTGCAATGCACAAGATCTTTTAAAATCAGTGCTTGCAGACAAACAAGAATTGTGTTTTTCTGTTGTCTCATTGCTCTGGCACAAGTTGATTGCATCACCTGAAACACAACCCATTGCAGAAAGCACTTCCGCCCAGCAAGGATGGAGACAGGTACCTTCTTACTTTTTCATGTTAATCGCTGTTAATGAATTAATATTTCCTGTGGCATTTGTCTGGTAAGAAACAAGATTTCATCCTCAAATAAGAAGCAACATCCCTGATAACATATGCTATATGCAATGCCAATGACATAGCTTGGAATTTTCCGCAAGTGTTCCTGCTTGGAGCTTCGCTCAAAGTTTCAAAAGGTGGTTGGTCATTGGTTTTGGCGCCAAAGATGTGAAAACCATTTTTCATGTAGAATAAAAATCCCTCAAAACAACATTATTTGGTCACTCGCCTAATTTACCTCCTGAAACTTTTTTTAAAAAGAAAAATAACAGACGTTACCTCCCTCAAAACATGTTAAGCTCATGCCAAAGGAGACAGGAGAATGATATGGCCTTTACTTGTTTGATCATAAGTAGCACCAATCTCTTCTTCTATATAGGTTTCTCTATGAATATGAATTTGTTATCTCAAGCCATGCACTCGGCCACTGTAACATAGGGGTTCATATGAACCCAATAACTTTTGTATAGACCCTATATTTGTATTAGAATACCCAGTATGTGGACAGTTCAGTTGTAAAGAAGAGACAATCAAAGCTCTCTGATTCCCAAGATGTGGGTTCTCGGAACCCACTTGTGTTGGTTCTTTTTCTCTTTTAGTTATATTCCTGATTCTCTTTTTAGAAGAATCATGAACCCGCATCAGTTTTTTCCTTTTTGCTATATGCAAATTTCTTTTTAAAACTTTTTAAAAACAAACATAAGATTAACAAATGAAAAAAGCAAAAAGCATTTCCTCTCTAAAACGAAAGGAGAACATTGTTTCTTCCTCTTTTACACAAATGCAAACCCAAAATGTGATTTTCAATGAAAAGTTAGGGTTCATACTTTTAAATATATATATTGAACATTGGTACTCGTACCTCAGTTTGGTACTAGCTTGAGGTCGGTGTCCCAAATTCAAAACCCATAAACCTCAGATCCTGACTCCGTCTCCGCATGCACCCCATCCACAAAAACCATTTACGCCCAAAATAGCAGTAACTACCAACAACCTTAATTAGAACTGTATAGGCGGCATAATAAGCAAATCATTGTACTGTTTGAATGTAGGAGGTGAAAATGTTATGATGGCAGAAACTGAGTTTGTTAGATTGGGAGCCAAAATGAGAAAATGTTGCTTTTTACGATTATTATGCAGTGTTTTTGTGTGATAGCATGAAGAATGTCCATAATTAAGTTAGTCACATGTTGCTTTTGCATTATATATCTGCATACACAAGATACTTAGTAGCTTTTTATATGGTGCTAACAGTCTTCCATAACTACAGGTGGTTGATGCACTATGCAATGTTGTATCAGCGGCACCTGGAAAAGCTGCAACAGCAATTGTTCTTCAGGTCCAGATTTCGCTTTAACTGTATTTGGTCATTATAGATCATGATCATTTTTTGTTAGGCTGCAGCTAGTATGCACAGTTCATATTTATTTGGATCCAAATGGCTTAACAGATACACCTGCTATTTCAAATAATTACATTCTTTTCTAGGGAAAAGAAACAAGTCTATCCTTGTCCTATCCGAAATTGAGAAATTTTGCCCTCCAATGAACTTTTGGTCTAATATTACTGATGCATTAGGATAAAAAGTCTTTTTTTTCCTTAACTCCTAACAAAACGCCAAGGGTAATTTTAAACTAAAGTTGAAAGACAAGGGGTAAGCTTGGACCTTTTTTCACAAATAATTTGGACACATGGAGTCCACCTATTTCATGTTGGAGTTCCGTTAATTAAAAGAAAAAATATAGGATGATTTGCTTATGGCAAGGGTATTAATAACGGACCCAAATTGTATGGAGAAAAAATTGAGCAATTCCGAATAGTTTAGGGGCAATTTCTGGAAGTTTTCCCTTCTCTGTCATATTTTTGGCGTTATCACATGGCAAATACATTTATGTTTATGGTACAGTACCTTTCCGGTTCCAGGGTTTCTTAGACTTGCATGCATTAATAGTTATCATCGCTTTGCTTCTAGCTGTAAGTAGGTCTTCATCACAATATTTGTTTGGTCACTTTCTTGCCAAACTTTACTTGTCAGGCTGAGAGGGAATTGCAACCATGGATTGCTAAAGATGATGAAGTTGGTCAGCAAATGTGGAGAATTAACCAACGTATAGTAAAATTGATCGCAGAACTGATAAGGAATCATGATATAGCGGAATCTTTGGTAATTCTGGCTAGTAACCCTGACCTCCTTTTACGGGCCACAGATGGGATGCTTGTCGATGGAGAAGCATGCACCTTACCACAGCTAGAGGTAATGACATATTTAGATTTCTGGTTTAGAGGTAACATCTTTTATACTACTTATTTCTCACCTGATGAATCTATGATTCAGAAAGCTACGACTTCCTTTATTTTCGTGAGTACTTGAATAGATGATTGATTCATCATATTCAATATCTTCTGTATTTTCTGATATATTTACATCCTTGCCCCTTAAAAAAAATTGAGCAGCTTTTGGAAGTGACAGCTAGAGCAATTCAACCAGTACTTGACTGGGGAGAATCTGGACAATCAG</genome_strand>
        <mrna_strand>CATTTTGGATTTAATTGCAATGCACAAGATCTTTTAAAATCAGTGCTTGCAGACAAACAAGAATTGTGTTTTTCTGTTGTCTCATTGCTCTGGCACAAGTTGATTGCATCACCTGAAACACAACCCATTGCAGAAAGCACTTCCGCCCAGCAAGGATGGAGACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTGATGCACTATGCAATGTTGTATCAGCGGCACCTGGAAAAGCTGCAACAGCAATTGTTCTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAGGGAATTGCAACCATGGATTGCTAAAGATGATGAAGTTGGTCAGCAAATGTGGAGAATTAACCAACGTATAGTAAAATTGATCGCAGAACTGATAAGGAATCATGATATAGCGGAATCTTTGGTAATTCTGGCTAGTAACCCTGACCTCCTTTTACGGGCCACAGATGGGATGCTTGTCGATGGAGAAGCATGCACCTTACCACAGCTAGAG........................................................................................................................................................................................................CTTTTGGAAGTGACAGCTAGAGCAATTCAACCAGTACTTGACTGGGGAGAATCTGGACAATCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E314833" ref_strand="+" ref_description="SGN-E314833 [cTOA-20-F14]">
      <seq>cattttggatttaattgcaatgcacaagatcttttaaaatcagtgcttgcagacaaacaagaattgtgtttttctgttgtctcattgctctggcacaagttgattgcatcacctgaaacacaacccattgcagaaagcacttccgcccagcaaggatggagacaggtggttgatgcactatgcaatgttgtatcagcggcacctggaaaagctgcaacagcaattgttcttcaggtccagatttcgctttaactgtatttggtcattatagatcatgatcattttttgttaggctgcagctagtatgcacagttcatatttatttggatccaaatggcttaacagatacacctgctatttcaaataattacattcttttctagggaaaagaaacaagtctatccttgtcctatccgaaattgagaaattttgccctccaatgaacttttggtctaatattactgatgcattaggataaaaagtcttttttttccttaactcctaacaaaacgccaagggtaattttaaactaaagttgaaagacaaggggtaagcttggaccttttttcacaaataatttggacacatggagtccacctatttcatgttggagttccgtttattaaaagaaaaaatataggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="40454" stop="43028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40754" g_stop="40918" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="165" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40919" i_stop="42248" i_length="1330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42249" g_stop="42728" g_length="480"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="645" r_length="480" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E314833" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314833" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40754" e_stop="40918"/>
          <exon e_start="42249" e_stop="42728"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTTTGGATTTAATTGCAATGCACAAGATCTTTTAAAATCAGTGCTTGCAGACAAACAAGAATTGTGTTTTTCTGTTGTCTCATTGCTCTGGCACAAGTTGATTGCATCACCTGAAACACAACCCATTGCAGAAAGCACTTCCGCCCAGCAAGGATGGAGACAGGTACCTTCTTACTTTTTCATGTTAATCGCTGTTAATGAATTAATATTTCCTGTGGCATTTGTCTGGTAAGAAACAAGATTTCATCCTCAAATAAGAAGCAACATCCCTGATAACATATGCTATATGCAATGCCAATGACATAGCTTGGAATTTTCCGCAAGTGTTCCTGCTTGGAGCTTCGCTCAAAGTTTCAAAAGGTGGTTGGTCATTGGTTTTGGCGCCAAAGATGTGAAAACCATTTTTCATGTAGAATAAAAATCCCTCAAAACAACATTATTTGGTCACTCGCCTAATTTACCTCCTGAAACTTTTTTTAAAAAGAAAAATAACAGACGTTACCTCCCTCAAAACATGTTAAGCTCATGCCAAAGGAGACAGGAGAATGATATGGCCTTTACTTGTTTGATCATAAGTAGCACCAATCTCTTCTTCTATATAGGTTTCTCTATGAATATGAATTTGTTATCTCAAGCCATGCACTCGGCCACTGTAACATAGGGGTTCATATGAACCCAATAACTTTTGTATAGACCCTATATTTGTATTAGAATACCCAGTATGTGGACAGTTCAGTTGTAAAGAAGAGACAATCAAAGCTCTCTGATTCCCAAGATGTGGGTTCTCGGAACCCACTTGTGTTGGTTCTTTTTCTCTTTTAGTTATATTCCTGATTCTCTTTTTAGAAGAATCATGAACCCGCATCAGTTTTTTCCTTTTTGCTATATGCAAATTTCTTTTTAAAACTTTTTAAAAACAAACATAAGATTAACAAATGAAAAAAGCAAAAAGCATTTCCTCTCTAAAACGAAAGGAGAACATTGTTTCTTCCTCTTTTACACAAATGCAAACCCAAAATGTGATTTTCAATGAAAAGTTAGGGTTCATACTTTTAAATATATATATTGAACATTGGTACTCGTACCTCAGTTTGGTACTAGCTTGAGGTCGGTGTCCCAAATTCAAAACCCATAAACCTCAGATCCTGACTCCGTCTCCGCATGCACCCCATCCACAAAAACCATTTACGCCCAAAATAGCAGTAACTACCAACAACCTTAATTAGAACTGTATAGGCGGCATAATAAGCAAATCATTGTACTGTTTGAATGTAGGAGGTGAAAATGTTATGATGGCAGAAACTGAGTTTGTTAGATTGGGAGCCAAAATGAGAAAATGTTGCTTTTTACGATTATTATGCAGTGTTTTTGTGTGATAGCATGAAGAATGTCCATAATTAAGTTAGTCACATGTTGCTTTTGCATTATATATCTGCATACACAAGATACTTAGTAGCTTTTTATATGGTGCTAACAGTCTTCCATAACTACAGGTGGTTGATGCACTATGCAATGTTGTATCAGCGGCACCTGGAAAAGCTGCAACAGCAATTGTTCTTCAGGTCCAGATTTCGCTTTAACTGTATTTGGTCATTATAGATCATGATCATTTTTTGTTAGGCTGCAGCTAGTATGCACAGTTCATATTTATTTGGATCCAAATGGCTTAACAGATACACCTGCTATTTCAAATAATTACATTCTTTTCTAGGGAAAAGAAACAAGTCTATCCTTGTCCTATCCGAAATTGAGAAATTTTGCCCTCCAATGAACTTTTGGTCTAATATTACTGATGCATTAGGATAAAAAGTCTTTTTTTTCCTTAACTCCTAACAAAACGCCAAGGGTAATTTTAAACTAAAGTTGAAAGACAAGGGGTAAGCTTGGACCTTTTTTCACAAATAATTTGGACACATGGAGTCCACCTATTTCATGTTGGAGTTCCGTTAATTAAAAGAAAAAATATAGGATGA</genome_strand>
        <mrna_strand>CATTTTGGATTTAATTGCAATGCACAAGATCTTTTAAAATCAGTGCTTGCAGACAAACAAGAATTGTGTTTTTCTGTTGTCTCATTGCTCTGGCACAAGTTGATTGCATCACCTGAAACACAACCCATTGCAGAAAGCACTTCCGCCCAGCAAGGATGGAGACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTGATGCACTATGCAATGTTGTATCAGCGGCACCTGGAAAAGCTGCAACAGCAATTGTTCTTCAGGTCCAGATTTCGCTTTAACTGTATTTGGTCATTATAGATCATGATCATTTTTTGTTAGGCTGCAGCTAGTATGCACAGTTCATATTTATTTGGATCCAAATGGCTTAACAGATACACCTGCTATTTCAAATAATTACATTCTTTTCTAGGGAAAAGAAACAAGTCTATCCTTGTCCTATCCGAAATTGAGAAATTTTGCCCTCCAATGAACTTTTGGTCTAATATTACTGATGCATTAGGATAAAAAGTCTTTTTTTTCCTTAACTCCTAACAAAACGCCAAGGGTAATTTTAAACTAAAGTTGAAAGACAAGGGGTAAGCTTGGACCTTTTTTCACAAATAATTTGGACACATGGAGTCCACCTATTTCATGTTGGAGTTCCGTTTATTAAAAGAAAAAATATAGGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E256414" ref_strand="+" ref_description="SGN-E256414 [cLEG-38-C20]">
      <seq>ttaaaatcagtgcttgcagacaaacaagaattgtgtttttctgttgtctcattgctctggcacaagttgattgcatcacctgaaacacaacccattgcagaaagcacttccgcccagcaaggatggagacaggtggttgatgcactatgcaatgttgtatcagcggcacctggaaaagctgcaacagcaattgttcttcaggtccagatttcgctttaactgtatttggtcattatagatcatgatcattttttgttaggctgcagctagtatgcacagttcatatttatttggatccaaatggcttaacagatacacctgctatttcaaataattacattcttttctagggaaaagaaacaagtctatccttgtcctatccgaaattgagaaattttgccctccaatgaacttttggtctaatattactgatgcattaggataaaaagtcttttttttccttaactcctaacaaaacgccaagggtaattttaaactaaagttgaaagacaaggggtaagcttggaccttttttcacaaataatttggacacatggagtccacctatttcatgttggag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="40487" stop="42996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40787" g_stop="40918" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40919" i_stop="42248" i_length="1330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42249" g_stop="42696" g_length="448"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="580" r_length="448" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E256414" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40787" e_stop="40918"/>
          <exon e_start="42249" e_stop="42696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAATCAGTGCTTGCAGACAAACAAGAATTGTGTTTTTCTGTTGTCTCATTGCTCTGGCACAAGTTGATTGCATCACCTGAAACACAACCCATTGCAGAAAGCACTTCCGCCCAGCAAGGATGGAGACAGGTACCTTCTTACTTTTTCATGTTAATCGCTGTTAATGAATTAATATTTCCTGTGGCATTTGTCTGGTAAGAAACAAGATTTCATCCTCAAATAAGAAGCAACATCCCTGATAACATATGCTATATGCAATGCCAATGACATAGCTTGGAATTTTCCGCAAGTGTTCCTGCTTGGAGCTTCGCTCAAAGTTTCAAAAGGTGGTTGGTCATTGGTTTTGGCGCCAAAGATGTGAAAACCATTTTTCATGTAGAATAAAAATCCCTCAAAACAACATTATTTGGTCACTCGCCTAATTTACCTCCTGAAACTTTTTTTAAAAAGAAAAATAACAGACGTTACCTCCCTCAAAACATGTTAAGCTCATGCCAAAGGAGACAGGAGAATGATATGGCCTTTACTTGTTTGATCATAAGTAGCACCAATCTCTTCTTCTATATAGGTTTCTCTATGAATATGAATTTGTTATCTCAAGCCATGCACTCGGCCACTGTAACATAGGGGTTCATATGAACCCAATAACTTTTGTATAGACCCTATATTTGTATTAGAATACCCAGTATGTGGACAGTTCAGTTGTAAAGAAGAGACAATCAAAGCTCTCTGATTCCCAAGATGTGGGTTCTCGGAACCCACTTGTGTTGGTTCTTTTTCTCTTTTAGTTATATTCCTGATTCTCTTTTTAGAAGAATCATGAACCCGCATCAGTTTTTTCCTTTTTGCTATATGCAAATTTCTTTTTAAAACTTTTTAAAAACAAACATAAGATTAACAAATGAAAAAAGCAAAAAGCATTTCCTCTCTAAAACGAAAGGAGAACATTGTTTCTTCCTCTTTTACACAAATGCAAACCCAAAATGTGATTTTCAATGAAAAGTTAGGGTTCATACTTTTAAATATATATATTGAACATTGGTACTCGTACCTCAGTTTGGTACTAGCTTGAGGTCGGTGTCCCAAATTCAAAACCCATAAACCTCAGATCCTGACTCCGTCTCCGCATGCACCCCATCCACAAAAACCATTTACGCCCAAAATAGCAGTAACTACCAACAACCTTAATTAGAACTGTATAGGCGGCATAATAAGCAAATCATTGTACTGTTTGAATGTAGGAGGTGAAAATGTTATGATGGCAGAAACTGAGTTTGTTAGATTGGGAGCCAAAATGAGAAAATGTTGCTTTTTACGATTATTATGCAGTGTTTTTGTGTGATAGCATGAAGAATGTCCATAATTAAGTTAGTCACATGTTGCTTTTGCATTATATATCTGCATACACAAGATACTTAGTAGCTTTTTATATGGTGCTAACAGTCTTCCATAACTACAGGTGGTTGATGCACTATGCAATGTTGTATCAGCGGCACCTGGAAAAGCTGCAACAGCAATTGTTCTTCAGGTCCAGATTTCGCTTTAACTGTATTTGGTCATTATAGATCATGATCATTTTTTGTTAGGCTGCAGCTAGTATGCACAGTTCATATTTATTTGGATCCAAATGGCTTAACAGATACACCTGCTATTTCAAATAATTACATTCTTTTCTAGGGAAAAGAAACAAGTCTATCCTTGTCCTATCCGAAATTGAGAAATTTTGCCCTCCAATGAACTTTTGGTCTAATATTACTGATGCATTAGGATAAAAAGTCTTTTTTTTCCTTAACTCCTAACAAAACGCCAAGGGTAATTTTAAACTAAAGTTGAAAGACAAGGGGTAAGCTTGGACCTTTTTTCACAAATAATTTGGACACATGGAGTCCACCTATTTCATGTTGGAG</genome_strand>
        <mrna_strand>TTAAAATCAGTGCTTGCAGACAAACAAGAATTGTGTTTTTCTGTTGTCTCATTGCTCTGGCACAAGTTGATTGCATCACCTGAAACACAACCCATTGCAGAAAGCACTTCCGCCCAGCAAGGATGGAGACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTGATGCACTATGCAATGTTGTATCAGCGGCACCTGGAAAAGCTGCAACAGCAATTGTTCTTCAGGTCCAGATTTCGCTTTAACTGTATTTGGTCATTATAGATCATGATCATTTTTTGTTAGGCTGCAGCTAGTATGCACAGTTCATATTTATTTGGATCCAAATGGCTTAACAGATACACCTGCTATTTCAAATAATTACATTCTTTTCTAGGGAAAAGAAACAAGTCTATCCTTGTCCTATCCGAAATTGAGAAATTTTGCCCTCCAATGAACTTTTGGTCTAATATTACTGATGCATTAGGATAAAAAGTCTTTTTTTTCCTTAACTCCTAACAAAACGCCAAGGGTAATTTTAAACTAAAGTTGAAAGACAAGGGGTAAGCTTGGACCTTTTTTCACAAATAATTTGGACACATGGAGTCCACCTATTTCATGTTGGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E258387" ref_strand="+" ref_description="SGN-E258387 [cLEG-47-K13]">
      <seq>ttaaaatcagtgcttgcagacaaacaagaattgtgtttttctgttgtctcattgctctggcacaagttgattgcatcacctgaaacacaacccattgcagaaagcacttccgcccagcaaggatggagacaggtggttgatgcactatgcaatgttgtatcagcggcacctggaaaagctgcaacagcaattgttcttcaggtccagatttcgctttaactgtatttggtcattatagatcatgatcattttttgttaggctgcagctagtatgcacagttcatatttatttggatccaaatggcttaacagatacacctgctatttcaaataattacattcttttctagggaaaagaaacaagtctatccttgtcctatccgaaattgagaaattttgccctccaatgaacttttggtctaatattactgatgcattaggataaaaagtcttttttttccttaactcctaacaaaacgccaagggtaatttttaactaaagttgaaagacnaggggtaagcttggaccttttttcacaataatttggacacatggagtccacctatttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="40487" stop="42987"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40787" g_stop="40918" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40919" i_stop="42248" i_length="1330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42249" g_stop="42687" g_length="439"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="570" r_length="438" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E258387" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>571</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258387" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40787" e_stop="40918"/>
          <exon e_start="42249" e_stop="42687"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAATCAGTGCTTGCAGACAAACAAGAATTGTGTTTTTCTGTTGTCTCATTGCTCTGGCACAAGTTGATTGCATCACCTGAAACACAACCCATTGCAGAAAGCACTTCCGCCCAGCAAGGATGGAGACAGGTACCTTCTTACTTTTTCATGTTAATCGCTGTTAATGAATTAATATTTCCTGTGGCATTTGTCTGGTAAGAAACAAGATTTCATCCTCAAATAAGAAGCAACATCCCTGATAACATATGCTATATGCAATGCCAATGACATAGCTTGGAATTTTCCGCAAGTGTTCCTGCTTGGAGCTTCGCTCAAAGTTTCAAAAGGTGGTTGGTCATTGGTTTTGGCGCCAAAGATGTGAAAACCATTTTTCATGTAGAATAAAAATCCCTCAAAACAACATTATTTGGTCACTCGCCTAATTTACCTCCTGAAACTTTTTTTAAAAAGAAAAATAACAGACGTTACCTCCCTCAAAACATGTTAAGCTCATGCCAAAGGAGACAGGAGAATGATATGGCCTTTACTTGTTTGATCATAAGTAGCACCAATCTCTTCTTCTATATAGGTTTCTCTATGAATATGAATTTGTTATCTCAAGCCATGCACTCGGCCACTGTAACATAGGGGTTCATATGAACCCAATAACTTTTGTATAGACCCTATATTTGTATTAGAATACCCAGTATGTGGACAGTTCAGTTGTAAAGAAGAGACAATCAAAGCTCTCTGATTCCCAAGATGTGGGTTCTCGGAACCCACTTGTGTTGGTTCTTTTTCTCTTTTAGTTATATTCCTGATTCTCTTTTTAGAAGAATCATGAACCCGCATCAGTTTTTTCCTTTTTGCTATATGCAAATTTCTTTTTAAAACTTTTTAAAAACAAACATAAGATTAACAAATGAAAAAAGCAAAAAGCATTTCCTCTCTAAAACGAAAGGAGAACATTGTTTCTTCCTCTTTTACACAAATGCAAACCCAAAATGTGATTTTCAATGAAAAGTTAGGGTTCATACTTTTAAATATATATATTGAACATTGGTACTCGTACCTCAGTTTGGTACTAGCTTGAGGTCGGTGTCCCAAATTCAAAACCCATAAACCTCAGATCCTGACTCCGTCTCCGCATGCACCCCATCCACAAAAACCATTTACGCCCAAAATAGCAGTAACTACCAACAACCTTAATTAGAACTGTATAGGCGGCATAATAAGCAAATCATTGTACTGTTTGAATGTAGGAGGTGAAAATGTTATGATGGCAGAAACTGAGTTTGTTAGATTGGGAGCCAAAATGAGAAAATGTTGCTTTTTACGATTATTATGCAGTGTTTTTGTGTGATAGCATGAAGAATGTCCATAATTAAGTTAGTCACATGTTGCTTTTGCATTATATATCTGCATACACAAGATACTTAGTAGCTTTTTATATGGTGCTAACAGTCTTCCATAACTACAGGTGGTTGATGCACTATGCAATGTTGTATCAGCGGCACCTGGAAAAGCTGCAACAGCAATTGTTCTTCAGGTCCAGATTTCGCTTTAACTGTATTTGGTCATTATAGATCATGATCATTTTTTGTTAGGCTGCAGCTAGTATGCACAGTTCATATTTATTTGGATCCAAATGGCTTAACAGATACACCTGCTATTTCAAATAATTACATTCTTTTCTAGGGAAAAGAAACAAGTCTATCCTTGTCCTATCCGAAATTGAGAAATTTTGCCCTCCAATGAACTTTTGGTCTAATATTACTGATGCATTAGGATAAAAAGTCTTTTTTTTCCTTAACTCCTAACAAAACGCCAAGGGTAATTTTAAACTAAAGTTGAAAGACAAGGGGTAAGCTTGGACCTTTTTTCACAAATAATTTGGACACATGGAGTCCACCTATTTC</genome_strand>
        <mrna_strand>TTAAAATCAGTGCTTGCAGACAAACAAGAATTGTGTTTTTCTGTTGTCTCATTGCTCTGGCACAAGTTGATTGCATCACCTGAAACACAACCCATTGCAGAAAGCACTTCCGCCCAGCAAGGATGGAGACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTGATGCACTATGCAATGTTGTATCAGCGGCACCTGGAAAAGCTGCAACAGCAATTGTTCTTCAGGTCCAGATTTCGCTTTAACTGTATTTGGTCATTATAGATCATGATCATTTTTTGTTAGGCTGCAGCTAGTATGCACAGTTCATATTTATTTGGATCCAAATGGCTTAACAGATACACCTGCTATTTCAAATAATTACATTCTTTTCTAGGGAAAAGAAACAAGTCTATCCTTGTCCTATCCGAAATTGAGAAATTTTGCCCTCCAATGAACTTTTGGTCTAATATTACTGATGCATTAGGATAAAAAGTCTTTTTTTTCCTTAACTCCTAACAAAACGCCAAGGGTAATTTTTAACTAAAGTTGAAAGACNAGGGGTAAGCTTGGACCTTTTTTCAC-AATAATTTGGACACATGGAGTCCACCTATTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E261748" ref_strand="+" ref_description="SGN-E261748 [cLEG-61-H14]">
      <seq>ttaaaatcagtgcttgcagacaaacaagaattgtgtttttctgttgtctcattgctctggcacaagttgattgcatcacctgaaacacaacccattgcagaaagcacttccgcccagcaaggatggagacaggtggttgatgcactatgcaatgttgtatcagcggcacctggaaaagctgcaacagcaattgttcttcaggtccagatttcgctttaactgtatttggtcattatagatcatgatcattttttgttaggctgcagctagtatgcacagttcatatttatttggatccaaatggcttaacagatacacctgctatttcaaataattacattcttttctagggaaaagaaacaagtctatccttgtcctatccgaaattgagaaattttgccctccaatgaacttttggtctaatattactgatgcattaggataaaaagtcttttttttccttaactcctaacaaaacgccaagggtaattttaaactaaagttgaaagacaggggtaagcttggacctttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="40487" stop="42951"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40787" g_stop="40918" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40919" i_stop="42248" i_length="1330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42249" g_stop="42651" g_length="403"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="534" r_length="402" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E261748" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261748" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40787" e_stop="40918"/>
          <exon e_start="42249" e_stop="42651"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAATCAGTGCTTGCAGACAAACAAGAATTGTGTTTTTCTGTTGTCTCATTGCTCTGGCACAAGTTGATTGCATCACCTGAAACACAACCCATTGCAGAAAGCACTTCCGCCCAGCAAGGATGGAGACAGGTACCTTCTTACTTTTTCATGTTAATCGCTGTTAATGAATTAATATTTCCTGTGGCATTTGTCTGGTAAGAAACAAGATTTCATCCTCAAATAAGAAGCAACATCCCTGATAACATATGCTATATGCAATGCCAATGACATAGCTTGGAATTTTCCGCAAGTGTTCCTGCTTGGAGCTTCGCTCAAAGTTTCAAAAGGTGGTTGGTCATTGGTTTTGGCGCCAAAGATGTGAAAACCATTTTTCATGTAGAATAAAAATCCCTCAAAACAACATTATTTGGTCACTCGCCTAATTTACCTCCTGAAACTTTTTTTAAAAAGAAAAATAACAGACGTTACCTCCCTCAAAACATGTTAAGCTCATGCCAAAGGAGACAGGAGAATGATATGGCCTTTACTTGTTTGATCATAAGTAGCACCAATCTCTTCTTCTATATAGGTTTCTCTATGAATATGAATTTGTTATCTCAAGCCATGCACTCGGCCACTGTAACATAGGGGTTCATATGAACCCAATAACTTTTGTATAGACCCTATATTTGTATTAGAATACCCAGTATGTGGACAGTTCAGTTGTAAAGAAGAGACAATCAAAGCTCTCTGATTCCCAAGATGTGGGTTCTCGGAACCCACTTGTGTTGGTTCTTTTTCTCTTTTAGTTATATTCCTGATTCTCTTTTTAGAAGAATCATGAACCCGCATCAGTTTTTTCCTTTTTGCTATATGCAAATTTCTTTTTAAAACTTTTTAAAAACAAACATAAGATTAACAAATGAAAAAAGCAAAAAGCATTTCCTCTCTAAAACGAAAGGAGAACATTGTTTCTTCCTCTTTTACACAAATGCAAACCCAAAATGTGATTTTCAATGAAAAGTTAGGGTTCATACTTTTAAATATATATATTGAACATTGGTACTCGTACCTCAGTTTGGTACTAGCTTGAGGTCGGTGTCCCAAATTCAAAACCCATAAACCTCAGATCCTGACTCCGTCTCCGCATGCACCCCATCCACAAAAACCATTTACGCCCAAAATAGCAGTAACTACCAACAACCTTAATTAGAACTGTATAGGCGGCATAATAAGCAAATCATTGTACTGTTTGAATGTAGGAGGTGAAAATGTTATGATGGCAGAAACTGAGTTTGTTAGATTGGGAGCCAAAATGAGAAAATGTTGCTTTTTACGATTATTATGCAGTGTTTTTGTGTGATAGCATGAAGAATGTCCATAATTAAGTTAGTCACATGTTGCTTTTGCATTATATATCTGCATACACAAGATACTTAGTAGCTTTTTATATGGTGCTAACAGTCTTCCATAACTACAGGTGGTTGATGCACTATGCAATGTTGTATCAGCGGCACCTGGAAAAGCTGCAACAGCAATTGTTCTTCAGGTCCAGATTTCGCTTTAACTGTATTTGGTCATTATAGATCATGATCATTTTTTGTTAGGCTGCAGCTAGTATGCACAGTTCATATTTATTTGGATCCAAATGGCTTAACAGATACACCTGCTATTTCAAATAATTACATTCTTTTCTAGGGAAAAGAAACAAGTCTATCCTTGTCCTATCCGAAATTGAGAAATTTTGCCCTCCAATGAACTTTTGGTCTAATATTACTGATGCATTAGGATAAAAAGTCTTTTTTTTCCTTAACTCCTAACAAAACGCCAAGGGTAATTTTAAACTAAAGTTGAAAGACAAGGGGTAAGCTTGGACCTTTTTT</genome_strand>
        <mrna_strand>TTAAAATCAGTGCTTGCAGACAAACAAGAATTGTGTTTTTCTGTTGTCTCATTGCTCTGGCACAAGTTGATTGCATCACCTGAAACACAACCCATTGCAGAAAGCACTTCCGCCCAGCAAGGATGGAGACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTGATGCACTATGCAATGTTGTATCAGCGGCACCTGGAAAAGCTGCAACAGCAATTGTTCTTCAGGTCCAGATTTCGCTTTAACTGTATTTGGTCATTATAGATCATGATCATTTTTTGTTAGGCTGCAGCTAGTATGCACAGTTCATATTTATTTGGATCCAAATGGCTTAACAGATACACCTGCTATTTCAAATAATTACATTCTTTTCTAGGGAAAAGAAACAAGTCTATCCTTGTCCTATCCGAAATTGAGAAATTTTGCCCTCCAATGAACTTTTGGTCTAATATTACTGATGCATTAGGATAAAAAGTCTTTTTTTTCCTTAACTCCTAACAAAACGCCAAGGGTAATTTTAAACTAAAGTTGAAAGAC-AGGGGTAAGCTTGGACCTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E257486" ref_strand="+" ref_description="SGN-E257486 [cLEG-45-L14]">
      <seq>ttaaaatcagtgcttgcagacaaacaagaattgtgtttttctgttgtctcattgctctggcacaagttgattgcatcacctgaaacacaacccattgcagaaagcacttccgcccagcaaggatggagacaggtggttgatgcactatgcaatgttgtatcagcggcacctggaaaagctgcaacagcaattgttcttcaggtccagatttcgctttaactgtatttggtcattatagatcatgatcattttttgttaggctgcagctagtatgcacagttcatatttatttggatccaaatggcttaacagatacacctgctatttcaaataattacattcttttctagggaaaacaaacaagtctatccttgtcctatccgaaattgacaaattttgccctccaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="40487" stop="42825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40787" g_stop="40918" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40919" i_stop="42248" i_length="1330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42249" g_stop="42525" g_length="277"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="409" r_length="277" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E257486" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>409</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40787" e_stop="40918"/>
          <exon e_start="42249" e_stop="42525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAATCAGTGCTTGCAGACAAACAAGAATTGTGTTTTTCTGTTGTCTCATTGCTCTGGCACAAGTTGATTGCATCACCTGAAACACAACCCATTGCAGAAAGCACTTCCGCCCAGCAAGGATGGAGACAGGTACCTTCTTACTTTTTCATGTTAATCGCTGTTAATGAATTAATATTTCCTGTGGCATTTGTCTGGTAAGAAACAAGATTTCATCCTCAAATAAGAAGCAACATCCCTGATAACATATGCTATATGCAATGCCAATGACATAGCTTGGAATTTTCCGCAAGTGTTCCTGCTTGGAGCTTCGCTCAAAGTTTCAAAAGGTGGTTGGTCATTGGTTTTGGCGCCAAAGATGTGAAAACCATTTTTCATGTAGAATAAAAATCCCTCAAAACAACATTATTTGGTCACTCGCCTAATTTACCTCCTGAAACTTTTTTTAAAAAGAAAAATAACAGACGTTACCTCCCTCAAAACATGTTAAGCTCATGCCAAAGGAGACAGGAGAATGATATGGCCTTTACTTGTTTGATCATAAGTAGCACCAATCTCTTCTTCTATATAGGTTTCTCTATGAATATGAATTTGTTATCTCAAGCCATGCACTCGGCCACTGTAACATAGGGGTTCATATGAACCCAATAACTTTTGTATAGACCCTATATTTGTATTAGAATACCCAGTATGTGGACAGTTCAGTTGTAAAGAAGAGACAATCAAAGCTCTCTGATTCCCAAGATGTGGGTTCTCGGAACCCACTTGTGTTGGTTCTTTTTCTCTTTTAGTTATATTCCTGATTCTCTTTTTAGAAGAATCATGAACCCGCATCAGTTTTTTCCTTTTTGCTATATGCAAATTTCTTTTTAAAACTTTTTAAAAACAAACATAAGATTAACAAATGAAAAAAGCAAAAAGCATTTCCTCTCTAAAACGAAAGGAGAACATTGTTTCTTCCTCTTTTACACAAATGCAAACCCAAAATGTGATTTTCAATGAAAAGTTAGGGTTCATACTTTTAAATATATATATTGAACATTGGTACTCGTACCTCAGTTTGGTACTAGCTTGAGGTCGGTGTCCCAAATTCAAAACCCATAAACCTCAGATCCTGACTCCGTCTCCGCATGCACCCCATCCACAAAAACCATTTACGCCCAAAATAGCAGTAACTACCAACAACCTTAATTAGAACTGTATAGGCGGCATAATAAGCAAATCATTGTACTGTTTGAATGTAGGAGGTGAAAATGTTATGATGGCAGAAACTGAGTTTGTTAGATTGGGAGCCAAAATGAGAAAATGTTGCTTTTTACGATTATTATGCAGTGTTTTTGTGTGATAGCATGAAGAATGTCCATAATTAAGTTAGTCACATGTTGCTTTTGCATTATATATCTGCATACACAAGATACTTAGTAGCTTTTTATATGGTGCTAACAGTCTTCCATAACTACAGGTGGTTGATGCACTATGCAATGTTGTATCAGCGGCACCTGGAAAAGCTGCAACAGCAATTGTTCTTCAGGTCCAGATTTCGCTTTAACTGTATTTGGTCATTATAGATCATGATCATTTTTTGTTAGGCTGCAGCTAGTATGCACAGTTCATATTTATTTGGATCCAAATGGCTTAACAGATACACCTGCTATTTCAAATAATTACATTCTTTTCTAGGGAAAAGAAACAAGTCTATCCTTGTCCTATCCGAAATTGAGAAATTTTGCCCTCCAATG</genome_strand>
        <mrna_strand>TTAAAATCAGTGCTTGCAGACAAACAAGAATTGTGTTTTTCTGTTGTCTCATTGCTCTGGCACAAGTTGATTGCATCACCTGAAACACAACCCATTGCAGAAAGCACTTCCGCCCAGCAAGGATGGAGACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTGATGCACTATGCAATGTTGTATCAGCGGCACCTGGAAAAGCTGCAACAGCAATTGTTCTTCAGGTCCAGATTTCGCTTTAACTGTATTTGGTCATTATAGATCATGATCATTTTTTGTTAGGCTGCAGCTAGTATGCACAGTTCATATTTATTTGGATCCAAATGGCTTAACAGATACACCTGCTATTTCAAATAATTACATTCTTTTCTAGGGAAAACAAACAAGTCTATCCTTGTCCTATCCGAAATTGACAAATTTTGCCCTCCAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E375486" ref_strand="+" ref_description="SGN-E375486 [TUS-34-L6]">
      <seq>ttaaaatcagtgcttgcagacaaacaagaattgtgtttttctgttgtctcattgctctggcacaagttgattgcatcacctgaaacacaacccattgcagaaagcacttccgcccagcaaggatggagacaggtggttgatgcactatgcaatgttgtatcagcggcacctggaaaagctgcaacagcaattgttcttcaggtccagatttcgctttaactgtatttggtcattatagatcatgatcattttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="40487" stop="42671"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40787" g_stop="40918" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="132" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40919" i_stop="42248" i_length="1330">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="42249" g_stop="42371" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="133" r_stop="255" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E375486" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>255</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375486" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40787" e_stop="40918"/>
          <exon e_start="42249" e_stop="42371"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAAATCAGTGCTTGCAGACAAACAAGAATTGTGTTTTTCTGTTGTCTCATTGCTCTGGCACAAGTTGATTGCATCACCTGAAACACAACCCATTGCAGAAAGCACTTCCGCCCAGCAAGGATGGAGACAGGTACCTTCTTACTTTTTCATGTTAATCGCTGTTAATGAATTAATATTTCCTGTGGCATTTGTCTGGTAAGAAACAAGATTTCATCCTCAAATAAGAAGCAACATCCCTGATAACATATGCTATATGCAATGCCAATGACATAGCTTGGAATTTTCCGCAAGTGTTCCTGCTTGGAGCTTCGCTCAAAGTTTCAAAAGGTGGTTGGTCATTGGTTTTGGCGCCAAAGATGTGAAAACCATTTTTCATGTAGAATAAAAATCCCTCAAAACAACATTATTTGGTCACTCGCCTAATTTACCTCCTGAAACTTTTTTTAAAAAGAAAAATAACAGACGTTACCTCCCTCAAAACATGTTAAGCTCATGCCAAAGGAGACAGGAGAATGATATGGCCTTTACTTGTTTGATCATAAGTAGCACCAATCTCTTCTTCTATATAGGTTTCTCTATGAATATGAATTTGTTATCTCAAGCCATGCACTCGGCCACTGTAACATAGGGGTTCATATGAACCCAATAACTTTTGTATAGACCCTATATTTGTATTAGAATACCCAGTATGTGGACAGTTCAGTTGTAAAGAAGAGACAATCAAAGCTCTCTGATTCCCAAGATGTGGGTTCTCGGAACCCACTTGTGTTGGTTCTTTTTCTCTTTTAGTTATATTCCTGATTCTCTTTTTAGAAGAATCATGAACCCGCATCAGTTTTTTCCTTTTTGCTATATGCAAATTTCTTTTTAAAACTTTTTAAAAACAAACATAAGATTAACAAATGAAAAAAGCAAAAAGCATTTCCTCTCTAAAACGAAAGGAGAACATTGTTTCTTCCTCTTTTACACAAATGCAAACCCAAAATGTGATTTTCAATGAAAAGTTAGGGTTCATACTTTTAAATATATATATTGAACATTGGTACTCGTACCTCAGTTTGGTACTAGCTTGAGGTCGGTGTCCCAAATTCAAAACCCATAAACCTCAGATCCTGACTCCGTCTCCGCATGCACCCCATCCACAAAAACCATTTACGCCCAAAATAGCAGTAACTACCAACAACCTTAATTAGAACTGTATAGGCGGCATAATAAGCAAATCATTGTACTGTTTGAATGTAGGAGGTGAAAATGTTATGATGGCAGAAACTGAGTTTGTTAGATTGGGAGCCAAAATGAGAAAATGTTGCTTTTTACGATTATTATGCAGTGTTTTTGTGTGATAGCATGAAGAATGTCCATAATTAAGTTAGTCACATGTTGCTTTTGCATTATATATCTGCATACACAAGATACTTAGTAGCTTTTTATATGGTGCTAACAGTCTTCCATAACTACAGGTGGTTGATGCACTATGCAATGTTGTATCAGCGGCACCTGGAAAAGCTGCAACAGCAATTGTTCTTCAGGTCCAGATTTCGCTTTAACTGTATTTGGTCATTATAGATCATGATCATTTTTTG</genome_strand>
        <mrna_strand>TTAAAATCAGTGCTTGCAGACAAACAAGAATTGTGTTTTTCTGTTGTCTCATTGCTCTGGCACAAGTTGATTGCATCACCTGAAACACAACCCATTGCAGAAAGCACTTCCGCCCAGCAAGGATGGAGACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTTGATGCACTATGCAATGTTGTATCAGCGGCACCTGGAAAAGCTGCAACAGCAATTGTTCTTCAGGTCCAGATTTCGCTTTAACTGTATTTGGTCATTATAGATCATGATCATTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E342662" ref_strand="+" ref_description="SGN-E342662 [cTOF-7-N5]">
      <seq>ttttttgttaggctgcagctagtatgcaccagttcctatttatttggatccaaatggcttaaccagataccacctgctatttcaaataattaccattcttttctagggaaaagaaacaagtctatccttgtcctatccgaaattgagaaattttgccctccaatgaacttttggtctaatattactgatgcattaggataaaaagtcttttttttccttaactcctaacaaaacgccaagggtaattttaaactaaagttgaaagacaaggggtaagcttggaccttttttcacaaataatttggacacatggagtccacctatttcatgttggagttccgttaattaaaagaaaaaatataggatgatttgcttatggcaagggtattaataacggacccaaattgtatggagaaaaaattgagcaattccgaatagtttaggggcaatttctggaaagttttcccttctctgtcatattttttggcgttatcacatggcaaatacatttatgtttatggtacagtacttgactggggagaatctggacaatcagttgctgatggcctcacaaacctattgaagtgtcgtttgcctgccacagttcngctgtgtttctcatccaagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="42065" stop="45135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42365" g_stop="42884" g_length="520"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="526" r_length="526" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="42885" i_stop="43466" i_length="582">
            <donor d_prob="0.000" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43467" g_stop="43525" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="527" r_stop="585" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43526" i_stop="44792" i_length="1267">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44793" g_stop="44835" g_length="43"/>
          <reference_exon_boundary r_type="cDNA" r_start="586" r_stop="629" r_length="44" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E342662" ref_strand="+">
        <total_alignment_score>0.978</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342662" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42365" e_stop="42884"/>
          <exon e_start="43467" e_stop="43525"/>
          <exon e_start="44793" e_stop="44835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTGTTAGGCTGCAGCTAGTATGCA-CAGTTCATATTTATTTGGATCCAAATGGCTTAA-CAGATA-CACCTGCTATTTCAAATAATTA-CATTCTTTTCTAGGGAAAAGAAACAAGTCTATCCTTGTCCTATCCGAAATTGAGAAATTTTGCCCTCCAATGAACTTTTGGTCTAATATTACTGATGCATTAGGATAAAAAGTCTTTTTTTTCCTTAACTCCTAACAAAACGCCAAGGGTAATTTTAAACTAAAGTTGAAAGACAAGGGGTAAGCTTGGACCTTTTTTCACAAATAATTTGGACACATGGAGTCCACCTATTTCATGTTGGAGTTCCGTTAATTAAAAGAAAAAATATAGGATGATTTGCTTATGGCAAGGGTATTAATAACGGACCCAAATTGTATGGAGAAAAAATTGAGCAATTCCGAATAGTTTAGGGGCAATTTCTGG-AAGTTTTCCCTTCTCTGTCATA-TTTTTGGCGTTATCACATGGCAAATACATTTATGTTTATGGTACAGTACCTTTCCGGTTCCAGGGTTTCTTAGACTTGCATGCATTAATAGTTATCATCGCTTTGCTTCTAGCTGTAAGTAGGTCTTCATCACAATATTTGTTTGGTCACTTTCTTGCCAAACTTTACTTGTCAGGCTGAGAGGGAATTGCAACCATGGATTGCTAAAGATGATGAAGTTGGTCAGCAAATGTGGAGAATTAACCAACGTATAGTAAAATTGATCGCAGAACTGATAAGGAATCATGATATAGCGGAATCTTTGGTAATTCTGGCTAGTAACCCTGACCTCCTTTTACGGGCCACAGATGGGATGCTTGTCGATGGAGAAGCATGCACCTTACCACAGCTAGAGGTAATGACATATTTAGATTTCTGGTTTAGAGGTAACATCTTTTATACTACTTATTTCTCACCTGATGAATCTATGATTCAGAAAGCTACGACTTCCTTTATTTTCGTGAGTACTTGAATAGATGATTGATTCATCATATTCAATATCTTCTGTATTTTCTGATATATTTACATCCTTGCCCCTTAAAAAAAATTGAGCAGCTTTTGGAAGTGACAGCTAGAGCAATTCAACCAGTACTTGACTGGGGAGAATCTGGACAATCAGTTGCTGATGGCCTCACAAACCTATTGAAGGTGATACTCTTTTCTAGACTTGGTTCAAATTTGGGATCAGTAAGGGTATGCTTGGTATGAAGGAAGAGCTAGTGGGTATCTTACTTATTTTCTAGTGTTTAGTAAATAAGCTACAAAAATATAGTCCAAAAAGTATTTATATGTAATCTAGCAAAACACTATGGGGAGTGGAATGGTCAAGCGTTGGGGGTTGTGGGAAGGAAAGGGAAGAGTAAAAACTTGGAATGTCACTTGTGAAGCTTGTTTATCTTACTTCCATTAGGGAAGTTATTATTTTTCTCATTTTTTTGGGTAGTGAACTGCGAATATCACCATAACACCCGAAAATATTTACAAATAAAGAGCATCTAGCATCTCAGCTGTCTTCTATGAAGAGTAGAGCATGTAGACATCAGGAACCAGCAAAACAAAAAAAAACAGCATCTCAAAACTAATTCCAGAGTCAATGAATCAGCATGTGACGGTTCCTAGCCTTCCTGGAGCTGGAAACTAACTCTAGATTCCTTTTGTATGCGTCACAGCAAACTCAGTATTTACAGTTAATTTCCTAAAAATTTCCAATTCCTAGCTTGCTAAGTATAGTATATCAAAGCACCATACTTTAGCTGTTACAACTTCCTGCTTAAACTCTCTCCGCGTTTTCTTTTCATCCAGCTCAGGCTTCGTTTCGCAGTTTTCTGTGGTGAAGATTCACCAACTCAAGTAGCCAAAGCAGTATTCACAGTAGTTGTCCATTGACAGTCTGCAAATAGGTGCTGATGAGTCTCAGTTATCCCTCATCACATAAACAACATACATCATCATCAACTGGATGTGTTGTCTGCGCAGCCTTTCTTTGGTTAAAAGTTTGTCATGCTATGCCTACCAAACCATCAGTCTCTGGCTAGCCCACATGATTGAACTCCAAACCAGTTCAGCTTCAGACAATCTATTTAGATCACCAAGCATGGCATTGTAACTACTTGACATTGAGTATGAGCCATTAGGAGTTAGTTGGTAAATCCCCCCTTAATATCAGTGCACTATCAACCCTTTAAGAGAATTCAACTTCTTCCTTCTTCCAGTACAAAGTACCAACTGCAATCCTGAGGTGGAGTATGTTCCCAAATATCATCATTTTGACCAACCAAACATGAGAAAATTGGAAAACATCTCCATACCAACACCCCCTTAAGATGAAAAAAGTTTATCTTATATTCTTTAATTTTACTTCGCACTTAATGATAAGATAAACTTAGGTACAACACTAACTAGGTTTACATTGCAGTGTCGTTTGCCTGCCACAGTTC-GCTGTGTTTCTCATCCAAGTG</genome_strand>
        <mrna_strand>TTTTTTGTTAGGCTGCAGCTAGTATGCACCAGTTCCTATTTATTTGGATCCAAATGGCTTAACCAGATACCACCTGCTATTTCAAATAATTACCATTCTTTTCTAGGGAAAAGAAACAAGTCTATCCTTGTCCTATCCGAAATTGAGAAATTTTGCCCTCCAATGAACTTTTGGTCTAATATTACTGATGCATTAGGATAAAAAGTCTTTTTTTTCCTTAACTCCTAACAAAACGCCAAGGGTAATTTTAAACTAAAGTTGAAAGACAAGGGGTAAGCTTGGACCTTTTTTCACAAATAATTTGGACACATGGAGTCCACCTATTTCATGTTGGAGTTCCGTTAATTAAAAGAAAAAATATAGGATGATTTGCTTATGGCAAGGGTATTAATAACGGACCCAAATTGTATGGAGAAAAAATTGAGCAATTCCGAATAGTTTAGGGGCAATTTCTGGAAAGTTTTCCCTTCTCTGTCATATTTTTTGGCGTTATCACATGGCAAATACATTTATGTTTATGGTACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTTGACTGGGGAGAATCTGGACAATCAGTTGCTGATGGCCTCACAAACCTATTGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGTTTGCCTGCCACAGTTCNGCTGTGTTTCTCATCCAAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E541753" ref_strand="+" ref_description="SGN-E541753 [TUS-62-L8]">
      <seq>ccgaaattgagaaattttgccctccaatgaacttttggtctaatattactgatgcattaggataaaaagtcttttttttccttaactcctaacaaaacgccaagggtaattttaaactaaagttgaaagacaaggggtaagcttggaccttttttcacaaataatttggacacatggagtccacctatttcatgttggagttccgttaattaaaagaaaaaatataggatgatttgcttatggcaagggtattaataacggacccaaattgtatggagaaaaaattgagcaattccgaatagtttaggggcaatttctggaagttttcccttctctgtcatatttttggcgttatcacatggcaaatacatttatgtttatggtacagtacctttccggttccagggtttcttagacttgcatgcattaatagttatcatcgctttgcttctagctgtaagtaggtcttcatcacaatatttgtttggtcactttcttgccaaactttacttgtcaggctgagagggaattgcaaccatggattgctaaagatgatgaagttggtcagcaaatgtggagaattaaccaacgtatagtaaaattgatcgcagaactgataaggaatcatgatatagcggaatctttggtaattctggctagtaaccctgacctccttttacgggccacagatgggatgcttgtcgatggagagcatgcaccttaccacagctagagcttttggagtgacagctagagcattcaaccagtacttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="42197" stop="43774"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42497" g_stop="43232" g_length="736"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="735" r_length="735" r_score="0.999"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43233" i_stop="43432" i_length="200">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.962" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43433" g_stop="43474" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="736" r_stop="775" r_length="40" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E541753" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541753" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42497" e_stop="43232"/>
          <exon e_start="43433" e_stop="43474"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAATTGAGAAATTTTGCCCTCCAATGAACTTTTGGTCTAATATTACTGATGCATTAGGATAAAAAGTCTTTTTTTTCCTTAACTCCTAACAAAACGCCAAGGGTAATTTTAAACTAAAGTTGAAAGACAAGGGGTAAGCTTGGACCTTTTTTCACAAATAATTTGGACACATGGAGTCCACCTATTTCATGTTGGAGTTCCGTTAATTAAAAGAAAAAATATAGGATGATTTGCTTATGGCAAGGGTATTAATAACGGACCCAAATTGTATGGAGAAAAAATTGAGCAATTCCGAATAGTTTAGGGGCAATTTCTGGAAGTTTTCCCTTCTCTGTCATATTTTTGGCGTTATCACATGGCAAATACATTTATGTTTATGGTACAGTACCTTTCCGGTTCCAGGGTTTCTTAGACTTGCATGCATTAATAGTTATCATCGCTTTGCTTCTAGCTGTAAGTAGGTCTTCATCACAATATTTGTTTGGTCACTTTCTTGCCAAACTTTACTTGTCAGGCTGAGAGGGAATTGCAACCATGGATTGCTAAAGATGATGAAGTTGGTCAGCAAATGTGGAGAATTAACCAACGTATAGTAAAATTGATCGCAGAACTGATAAGGAATCATGATATAGCGGAATCTTTGGTAATTCTGGCTAGTAACCCTGACCTCCTTTTACGGGCCACAGATGGGATGCTTGTCGATGGAGAAGCATGCACCTTACCACAGCTAGAGGTAATGACATATTTAGATTTCTGGTTTAGAGGTAACATCTTTTATACTACTTATTTCTCACCTGATGAATCTATGATTCAGAAAGCTACGACTTCCTTTATTTTCGTGAGTACTTGAATAGATGATTGATTCATCATATTCAATATCTTCTGTATTTTCTGATATATTTACATCCTTGCCCCTTAAAAAAAATTGAGCAGCTTTTGGAAGTGACAGCTAGAGCAATTCAACCAGTACTTGAC</genome_strand>
        <mrna_strand>CCGAAATTGAGAAATTTTGCCCTCCAATGAACTTTTGGTCTAATATTACTGATGCATTAGGATAAAAAGTCTTTTTTTTCCTTAACTCCTAACAAAACGCCAAGGGTAATTTTAAACTAAAGTTGAAAGACAAGGGGTAAGCTTGGACCTTTTTTCACAAATAATTTGGACACATGGAGTCCACCTATTTCATGTTGGAGTTCCGTTAATTAAAAGAAAAAATATAGGATGATTTGCTTATGGCAAGGGTATTAATAACGGACCCAAATTGTATGGAGAAAAAATTGAGCAATTCCGAATAGTTTAGGGGCAATTTCTGGAAGTTTTCCCTTCTCTGTCATATTTTTGGCGTTATCACATGGCAAATACATTTATGTTTATGGTACAGTACCTTTCCGGTTCCAGGGTTTCTTAGACTTGCATGCATTAATAGTTATCATCGCTTTGCTTCTAGCTGTAAGTAGGTCTTCATCACAATATTTGTTTGGTCACTTTCTTGCCAAACTTTACTTGTCAGGCTGAGAGGGAATTGCAACCATGGATTGCTAAAGATGATGAAGTTGGTCAGCAAATGTGGAGAATTAACCAACGTATAGTAAAATTGATCGCAGAACTGATAAGGAATCATGATATAGCGGAATCTTTGGTAATTCTGGCTAGTAACCCTGACCTCCTTTTACGGGCCACAGATGGGATGCTTGTCGATGGAG-AGCATGCACCTTACCACAGCTAGAG........................................................................................................................................................................................................CTTTTGG-AGTGACAGCTAGAGC-ATTCAACCAGTACTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E299652" ref_strand="+" ref_description="SGN-E299652 [cLEW-1-G13]">
      <seq>cgaaattgataaattttgccctccaatgaacttttggtctaatattactgatgcattaggataaaaagtcttttttttccttaactcctaacaaaacgccaagggtaattttaaactaaagttgaaagacaaggggtaagcttggaccttttttcacaaataatttggacacatggagtccacctatttcatgttggagttccgttaattaaaagaaaaaatataggatgatttgcttatggcaagggtattaataacggacccaaattgtatggagaaaaaattgagcaattccgaatagtttaggggcaatttctggaagttttcccttctctgtcatatttttggcgttatcacatggcaaatacatttatgtttatggtacagtacctttccggttccagggtttcttagacttgcatgcattaatagttatcatcgctttgcttctagctgtaagtaggtcttcatcacaatatttgtttggtcactttcttgccaaactttacttgtcaggctgagagggaattgcaaccatggattgctaaagatgatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="42198" stop="43355"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42498" g_stop="43055" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E299652" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299652" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42498" e_stop="43055"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAATTGAGAAATTTTGCCCTCCAATGAACTTTTGGTCTAATATTACTGATGCATTAGGATAAAAAGTCTTTTTTTTCCTTAACTCCTAACAAAACGCCAAGGGTAATTTTAAACTAAAGTTGAAAGACAAGGGGTAAGCTTGGACCTTTTTTCACAAATAATTTGGACACATGGAGTCCACCTATTTCATGTTGGAGTTCCGTTAATTAAAAGAAAAAATATAGGATGATTTGCTTATGGCAAGGGTATTAATAACGGACCCAAATTGTATGGAGAAAAAATTGAGCAATTCCGAATAGTTTAGGGGCAATTTCTGGAAGTTTTCCCTTCTCTGTCATATTTTTGGCGTTATCACATGGCAAATACATTTATGTTTATGGTACAGTACCTTTCCGGTTCCAGGGTTTCTTAGACTTGCATGCATTAATAGTTATCATCGCTTTGCTTCTAGCTGTAAGTAGGTCTTCATCACAATATTTGTTTGGTCACTTTCTTGCCAAACTTTACTTGTCAGGCTGAGAGGGAATTGCAACCATGGATTGCTAAAGATGATGAA</genome_strand>
        <mrna_strand>CGAAATTGATAAATTTTGCCCTCCAATGAACTTTTGGTCTAATATTACTGATGCATTAGGATAAAAAGTCTTTTTTTTCCTTAACTCCTAACAAAACGCCAAGGGTAATTTTAAACTAAAGTTGAAAGACAAGGGGTAAGCTTGGACCTTTTTTCACAAATAATTTGGACACATGGAGTCCACCTATTTCATGTTGGAGTTCCGTTAATTAAAAGAAAAAATATAGGATGATTTGCTTATGGCAAGGGTATTAATAACGGACCCAAATTGTATGGAGAAAAAATTGAGCAATTCCGAATAGTTTAGGGGCAATTTCTGGAAGTTTTCCCTTCTCTGTCATATTTTTGGCGTTATCACATGGCAAATACATTTATGTTTATGGTACAGTACCTTTCCGGTTCCAGGGTTTCTTAGACTTGCATGCATTAATAGTTATCATCGCTTTGCTTCTAGCTGTAAGTAGGTCTTCATCACAATATTTGTTTGGTCACTTTCTTGCCAAACTTTACTTGTCAGGCTGAGAGGGAATTGCAACCATGGATTGCTAAAGATGATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E299806" ref_strand="+" ref_description="SGN-E299806 [cLEW-1-G21]">
      <seq>gaaattgttaaattttgccctccaatgaacttttggtgtgatattactggtgcattagggatcaaaggcttttttttgcttaacttctaacaaaacgccaagggttattttaaactaaagttgaagaaagggggtaggttgggcctttttcacaaataatttggacacatggagtccacctatttcatgttggagttccgttaattaaaagaaaaaatataggatgatttgcttatggcaagggtattaataacggacccaaattgtatggagaaaaaattgagcaattccgaatagtttaggggcaatttctggaagttttcccttctctgtcatatttttggcgttatcacatggcaaatacatttatgtttatggtacagtacctttccggttccagggtttcttagacttgcatgcattaatagttatcatcgctttgcttctagctgtaagtaggtcttcatcacaatatttgtttggtcactttcttgccaaactttacttgtcaggctgagagggaattgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="42199" stop="43329"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42499" g_stop="43029" g_length="531"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="528" r_length="528" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E299806" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>531</cumulative_length_of_scored_exons>
        <coverage percentage="1.006" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299806" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42499" e_stop="43029"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAATTGAGAAATTTTGCCCTCCAATGAACTTTTGGTCTAATATTACTGATGCATTAGGATAAAAAGTCTTTTTTTTCCTTAACTCCTAACAAAACGCCAAGGGTAATTTTAAACTAAAGTTGAAAGACAAGGGGTAAGCTTGGACCTTTTTTCACAAATAATTTGGACACATGGAGTCCACCTATTTCATGTTGGAGTTCCGTTAATTAAAAGAAAAAATATAGGATGATTTGCTTATGGCAAGGGTATTAATAACGGACCCAAATTGTATGGAGAAAAAATTGAGCAATTCCGAATAGTTTAGGGGCAATTTCTGGAAGTTTTCCCTTCTCTGTCATATTTTTGGCGTTATCACATGGCAAATACATTTATGTTTATGGTACAGTACCTTTCCGGTTCCAGGGTTTCTTAGACTTGCATGCATTAATAGTTATCATCGCTTTGCTTCTAGCTGTAAGTAGGTCTTCATCACAATATTTGTTTGGTCACTTTCTTGCCAAACTTTACTTGTCAGGCTGAGAGGGAATTGC</genome_strand>
        <mrna_strand>GAAATTGTTAAATTTTGCCCTCCAATGAACTTTTGGTGTGATATTACTGGTGCATTAGGGATCAAAGGCTTTTTTTTGCTTAACTTCTAACAAAACGCCAAGGGTTATTTTAAACTAAAGTTG-AAGA-AAGGGGGTAGGTTGGGCC-TTTTTCACAAATAATTTGGACACATGGAGTCCACCTATTTCATGTTGGAGTTCCGTTAATTAAAAGAAAAAATATAGGATGATTTGCTTATGGCAAGGGTATTAATAACGGACCCAAATTGTATGGAGAAAAAATTGAGCAATTCCGAATAGTTTAGGGGCAATTTCTGGAAGTTTTCCCTTCTCTGTCATATTTTTGGCGTTATCACATGGCAAATACATTTATGTTTATGGTACAGTACCTTTCCGGTTCCAGGGTTTCTTAGACTTGCATGCATTAATAGTTATCATCGCTTTGCTTCTAGCTGTAAGTAGGTCTTCATCACAATATTTGTTTGGTCACTTTCTTGCCAAACTTTACTTGTCAGGCTGAGAGGGAATTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E261909" ref_strand="+" ref_description="SGN-E261909 [cLEG-61-N24]">
      <seq>aaatataggatgatttgcttatggcaagggtattaataacggacccaaattgtatggagaaaaaattgagcaattccgaatagtttaggggcaatttctggaagttttcccttctctgtcatatttttggcgttatcacatggcaaatacatttatgtttatggtacagtacctttccggttccagggtttcttagacttgcatgcattaatagttatcatcgctttgcttctagctgtaagtaggtcttcatcacaatatttgtttggtcactttcttgccaaactttacttgtcaggctgagagggaattgcaaccatggattgctaaagatgatgaagttggtcagcaaatgtggagaattaaccaacgtatagtaaaattgatcgcagaactgataaggaatcatgatatagcggaatctttggtaattctggctagtaaccctgacctccttttacgggccacagatgggatgcttgtcgatggagaagcatgcaccttaccacagctagagcttttggaagtgacagctagagcaattcaaccagtacttgactggggagaatctggacaatcagttgctgatggcctcacaacctattgaagtgtcgtttgcctgccacagttcgctgtgtttctcatcaagtgcacatgtccgtgctctcagtacatcagttcttcgtgacattatgtantgctggttcagtaaaaccaagtgcccaacaagcagcagatgttaatgccatccataatcctgcttatcagtaccttagcataagcatcattgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="42416" stop="45276"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42716" g_stop="43232" g_length="517"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="517" r_length="517" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43233" i_stop="43432" i_length="200">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43433" g_stop="43525" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="518" r_stop="609" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43526" i_stop="44792" i_length="1267">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.862" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44793" g_stop="44976" g_length="184"/>
          <reference_exon_boundary r_type="cDNA" r_start="610" r_stop="793" r_length="184" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E261909" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261909" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42716" e_stop="43232"/>
          <exon e_start="43433" e_stop="43525"/>
          <exon e_start="44793" e_stop="44976"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATAGGATGATTTGCTTATGGCAAGGGTATTAATAACGGACCCAAATTGTATGGAGAAAAAATTGAGCAATTCCGAATAGTTTAGGGGCAATTTCTGGAAGTTTTCCCTTCTCTGTCATATTTTTGGCGTTATCACATGGCAAATACATTTATGTTTATGGTACAGTACCTTTCCGGTTCCAGGGTTTCTTAGACTTGCATGCATTAATAGTTATCATCGCTTTGCTTCTAGCTGTAAGTAGGTCTTCATCACAATATTTGTTTGGTCACTTTCTTGCCAAACTTTACTTGTCAGGCTGAGAGGGAATTGCAACCATGGATTGCTAAAGATGATGAAGTTGGTCAGCAAATGTGGAGAATTAACCAACGTATAGTAAAATTGATCGCAGAACTGATAAGGAATCATGATATAGCGGAATCTTTGGTAATTCTGGCTAGTAACCCTGACCTCCTTTTACGGGCCACAGATGGGATGCTTGTCGATGGAGAAGCATGCACCTTACCACAGCTAGAGGTAATGACATATTTAGATTTCTGGTTTAGAGGTAACATCTTTTATACTACTTATTTCTCACCTGATGAATCTATGATTCAGAAAGCTACGACTTCCTTTATTTTCGTGAGTACTTGAATAGATGATTGATTCATCATATTCAATATCTTCTGTATTTTCTGATATATTTACATCCTTGCCCCTTAAAAAAAATTGAGCAGCTTTTGGAAGTGACAGCTAGAGCAATTCAACCAGTACTTGACTGGGGAGAATCTGGACAATCAGTTGCTGATGGCCTCACAAACCTATTGAAGGTGATACTCTTTTCTAGACTTGGTTCAAATTTGGGATCAGTAAGGGTATGCTTGGTATGAAGGAAGAGCTAGTGGGTATCTTACTTATTTTCTAGTGTTTAGTAAATAAGCTACAAAAATATAGTCCAAAAAGTATTTATATGTAATCTAGCAAAACACTATGGGGAGTGGAATGGTCAAGCGTTGGGGGTTGTGGGAAGGAAAGGGAAGAGTAAAAACTTGGAATGTCACTTGTGAAGCTTGTTTATCTTACTTCCATTAGGGAAGTTATTATTTTTCTCATTTTTTTGGGTAGTGAACTGCGAATATCACCATAACACCCGAAAATATTTACAAATAAAGAGCATCTAGCATCTCAGCTGTCTTCTATGAAGAGTAGAGCATGTAGACATCAGGAACCAGCAAAACAAAAAAAAACAGCATCTCAAAACTAATTCCAGAGTCAATGAATCAGCATGTGACGGTTCCTAGCCTTCCTGGAGCTGGAAACTAACTCTAGATTCCTTTTGTATGCGTCACAGCAAACTCAGTATTTACAGTTAATTTCCTAAAAATTTCCAATTCCTAGCTTGCTAAGTATAGTATATCAAAGCACCATACTTTAGCTGTTACAACTTCCTGCTTAAACTCTCTCCGCGTTTTCTTTTCATCCAGCTCAGGCTTCGTTTCGCAGTTTTCTGTGGTGAAGATTCACCAACTCAAGTAGCCAAAGCAGTATTCACAGTAGTTGTCCATTGACAGTCTGCAAATAGGTGCTGATGAGTCTCAGTTATCCCTCATCACATAAACAACATACATCATCATCAACTGGATGTGTTGTCTGCGCAGCCTTTCTTTGGTTAAAAGTTTGTCATGCTATGCCTACCAAACCATCAGTCTCTGGCTAGCCCACATGATTGAACTCCAAACCAGTTCAGCTTCAGACAATCTATTTAGATCACCAAGCATGGCATTGTAACTACTTGACATTGAGTATGAGCCATTAGGAGTTAGTTGGTAAATCCCCCCTTAATATCAGTGCACTATCAACCCTTTAAGAGAATTCAACTTCTTCCTTCTTCCAGTACAAAGTACCAACTGCAATCCTGAGGTGGAGTATGTTCCCAAATATCATCATTTTGACCAACCAAACATGAGAAAATTGGAAAACATCTCCATACCAACACCCCCTTAAGATGAAAAAAGTTTATCTTATATTCTTTAATTTTACTTCGCACTTAATGATAAGATAAACTTAGGTACAACACTAACTAGGTTTACATTGCAGTGTCGTTTGCCTGCCACAGTTCGCTGTGTTTCTCATCCAAGTGCACATGTCCGTGCTCTCAGTACATCAGTTCTTCGTGACATTATGTA-TGCTGGTTCAGTAAAACCAAGTGCCAAACAAGCAGCAGATGTTAATGCCATCCATAATCCTGCTTATCAGTACCTTAGCATAAGCATCATTGACT</genome_strand>
        <mrna_strand>AAATATAGGATGATTTGCTTATGGCAAGGGTATTAATAACGGACCCAAATTGTATGGAGAAAAAATTGAGCAATTCCGAATAGTTTAGGGGCAATTTCTGGAAGTTTTCCCTTCTCTGTCATATTTTTGGCGTTATCACATGGCAAATACATTTATGTTTATGGTACAGTACCTTTCCGGTTCCAGGGTTTCTTAGACTTGCATGCATTAATAGTTATCATCGCTTTGCTTCTAGCTGTAAGTAGGTCTTCATCACAATATTTGTTTGGTCACTTTCTTGCCAAACTTTACTTGTCAGGCTGAGAGGGAATTGCAACCATGGATTGCTAAAGATGATGAAGTTGGTCAGCAAATGTGGAGAATTAACCAACGTATAGTAAAATTGATCGCAGAACTGATAAGGAATCATGATATAGCGGAATCTTTGGTAATTCTGGCTAGTAACCCTGACCTCCTTTTACGGGCCACAGATGGGATGCTTGTCGATGGAGAAGCATGCACCTTACCACAGCTAGAG........................................................................................................................................................................................................CTTTTGGAAGTGACAGCTAGAGCAATTCAACCAGTACTTGACTGGGGAGAATCTGGACAATCAGTTGCTGATGGCCTCAC-AACCTATTGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGTTTGCCTGCCACAGTTCGCTGTGTTTCTCAT-CAAGTGCACATGTCCGTGCTCTCAGTACATCAGTTCTTCGTGACATTATGTANTGCTGGTTCAGTAAAACCAAGTGCCCAACAAGCAGCAGATGTTAATGCCATCCATAATCCTGCTTATCAGTACCTTAGCATAAGCATCATTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E257972" ref_strand="+" ref_description="SGN-E257972 [cLEG-48-B13]">
      <seq>aaatataggatgatttgcttatggcaagggtattaataacggacccaaattgtatggagaaaaaattgagcaattccgaatagtttaggggcaatttctggaagttttcccttctctgtcatatttttggcgttatcacatggcaaatacatttatgtttatggtacagtacctttccggttccagggtttcttagacttgcatgcattaatagttatcatcgctttgcttctaactgtaagtaaggcttcatcacaatatttgtttggtcactttcttgccaaactttact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="42416" stop="43307"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42716" g_stop="43007" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="292" r_length="292" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E257972" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257972" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42716" e_stop="43007"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATATAGGATGATTTGCTTATGGCAAGGGTATTAATAACGGACCCAAATTGTATGGAGAAAAAATTGAGCAATTCCGAATAGTTTAGGGGCAATTTCTGGAAGTTTTCCCTTCTCTGTCATATTTTTGGCGTTATCACATGGCAAATACATTTATGTTTATGGTACAGTACCTTTCCGGTTCCAGGGTTTCTTAGACTTGCATGCATTAATAGTTATCATCGCTTTGCTTCTAGCTGTAAGTAGGTCTTCATCACAATATTTGTTTGGTCACTTTCTTGCCAAACTTTACT</genome_strand>
        <mrna_strand>AAATATAGGATGATTTGCTTATGGCAAGGGTATTAATAACGGACCCAAATTGTATGGAGAAAAAATTGAGCAATTCCGAATAGTTTAGGGGCAATTTCTGGAAGTTTTCCCTTCTCTGTCATATTTTTGGCGTTATCACATGGCAAATACATTTATGTTTATGGTACAGTACCTTTCCGGTTCCAGGGTTTCTTAGACTTGCATGCATTAATAGTTATCATCGCTTTGCTTCTAACTGTAAGTAAGGCTTCATCACAATATTTGTTTGGTCACTTTCTTGCCAAACTTTACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E740984" ref_strand="+" ref_description="SGN-E740984 [LC23DA04]">
      <seq>ccgttactttcttgccaaactttacttgtcaggctgagagggaattgcaaccatggattgctaaagatgatgaagttggtcagcaaatgtggagaattaaccaacgtatagtaaaattgatcgcagaactgataaggaatcatgatatagcggaatctttggtaattctggctagtaaccctgacctccttttacgggccacagatgggatgcttgtcgatggagaagcatgcaccttaccacagctagagcttttggaagtgacagctagagcaattcaaccagtacttgactggggagaatctggacaatcagttgctgatggcttcacaaacctattgaagtgtcgtttgcctgccacagttcgctgtgtttctcatccaagtgcacatgtccgtgctctcagtacatcagttcttcgtgacattatgtatgctggttcagtaaaaccaagtgccaaacaagcagcagatgttaatgccatccataatcctgcttatcagtaccttagcataagcatcattgactggaaagcggatattgagaagtgtttgatgtgtgaagctagtagccggcttgaaaatggaatgtctgctcaatttcttgatactgctgctagggaattaggctgtactatatcagtctgaaaactcacttttctggggcatatattaggtctctctgtaccataccatacctatcttgtaaaagtcagttagaaaatatattttagagtcctgtgattgttgtacaatggcatgtagatagttccacttgttttgtttttcatttggcacagattgtgtttgttgtacttccaaatacaaacatgatttgtggaaataagtagatgtagttgtttaatattttgagtgacccactaaaggctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="42684" stop="45639"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42982" g_stop="43232" g_length="251"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="251" r_length="251" r_score="0.988"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43233" i_stop="43432" i_length="200">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43433" g_stop="43525" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="344" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43526" i_stop="44792" i_length="1267">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44793" g_stop="45339" g_length="547"/>
          <reference_exon_boundary r_type="cDNA" r_start="345" r_stop="891" r_length="547" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E740984" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>891</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42982" e_stop="43232"/>
          <exon e_start="43433" e_stop="43525"/>
          <exon e_start="44793" e_stop="45339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTCACTTTCTTGCCAAACTTTACTTGTCAGGCTGAGAGGGAATTGCAACCATGGATTGCTAAAGATGATGAAGTTGGTCAGCAAATGTGGAGAATTAACCAACGTATAGTAAAATTGATCGCAGAACTGATAAGGAATCATGATATAGCGGAATCTTTGGTAATTCTGGCTAGTAACCCTGACCTCCTTTTACGGGCCACAGATGGGATGCTTGTCGATGGAGAAGCATGCACCTTACCACAGCTAGAGGTAATGACATATTTAGATTTCTGGTTTAGAGGTAACATCTTTTATACTACTTATTTCTCACCTGATGAATCTATGATTCAGAAAGCTACGACTTCCTTTATTTTCGTGAGTACTTGAATAGATGATTGATTCATCATATTCAATATCTTCTGTATTTTCTGATATATTTACATCCTTGCCCCTTAAAAAAAATTGAGCAGCTTTTGGAAGTGACAGCTAGAGCAATTCAACCAGTACTTGACTGGGGAGAATCTGGACAATCAGTTGCTGATGGCCTCACAAACCTATTGAAGGTGATACTCTTTTCTAGACTTGGTTCAAATTTGGGATCAGTAAGGGTATGCTTGGTATGAAGGAAGAGCTAGTGGGTATCTTACTTATTTTCTAGTGTTTAGTAAATAAGCTACAAAAATATAGTCCAAAAAGTATTTATATGTAATCTAGCAAAACACTATGGGGAGTGGAATGGTCAAGCGTTGGGGGTTGTGGGAAGGAAAGGGAAGAGTAAAAACTTGGAATGTCACTTGTGAAGCTTGTTTATCTTACTTCCATTAGGGAAGTTATTATTTTTCTCATTTTTTTGGGTAGTGAACTGCGAATATCACCATAACACCCGAAAATATTTACAAATAAAGAGCATCTAGCATCTCAGCTGTCTTCTATGAAGAGTAGAGCATGTAGACATCAGGAACCAGCAAAACAAAAAAAAACAGCATCTCAAAACTAATTCCAGAGTCAATGAATCAGCATGTGACGGTTCCTAGCCTTCCTGGAGCTGGAAACTAACTCTAGATTCCTTTTGTATGCGTCACAGCAAACTCAGTATTTACAGTTAATTTCCTAAAAATTTCCAATTCCTAGCTTGCTAAGTATAGTATATCAAAGCACCATACTTTAGCTGTTACAACTTCCTGCTTAAACTCTCTCCGCGTTTTCTTTTCATCCAGCTCAGGCTTCGTTTCGCAGTTTTCTGTGGTGAAGATTCACCAACTCAAGTAGCCAAAGCAGTATTCACAGTAGTTGTCCATTGACAGTCTGCAAATAGGTGCTGATGAGTCTCAGTTATCCCTCATCACATAAACAACATACATCATCATCAACTGGATGTGTTGTCTGCGCAGCCTTTCTTTGGTTAAAAGTTTGTCATGCTATGCCTACCAAACCATCAGTCTCTGGCTAGCCCACATGATTGAACTCCAAACCAGTTCAGCTTCAGACAATCTATTTAGATCACCAAGCATGGCATTGTAACTACTTGACATTGAGTATGAGCCATTAGGAGTTAGTTGGTAAATCCCCCCTTAATATCAGTGCACTATCAACCCTTTAAGAGAATTCAACTTCTTCCTTCTTCCAGTACAAAGTACCAACTGCAATCCTGAGGTGGAGTATGTTCCCAAATATCATCATTTTGACCAACCAAACATGAGAAAATTGGAAAACATCTCCATACCAACACCCCCTTAAGATGAAAAAAGTTTATCTTATATTCTTTAATTTTACTTCGCACTTAATGATAAGATAAACTTAGGTACAACACTAACTAGGTTTACATTGCAGTGTCGTTTGCCTGCCACAGTTCGCTGTGTTTCTCATCCAAGTGCACATGTCCGTGCTCTCAGTACATCAGTTCTTCGTGACATTATGTATGCTGGTTCAGTAAAACCAAGTGCCAAACAAGCAGCAGATGTTAATGCCATCCATAATCCTGCTTATCAGTACCTTAGCATAAGCATCATTGACTGGAAAGCGGATATTGAGAAGTGTTTGATGTGTGAAGCTAGTAGCCGGCTTGAAAATGGAATGTCTGCTCAATTTCTTGATACTGCTGCTAGGGAATTAGGCTGTACTATATCAGTCTGAAAACTCACTTTTCTGGGGCATATATTAGGTCTCTCTGTACCATACCATACCTATCTTGTAAAAGTCAGTTAGAAAATATATTTTAGAGTCCTGTGATTGTTGTACAATGGCATGTAGATAGTTCCACTTGTTTTGTTTTTCATTTGGCACAGATTGTGTTTGTTGTACTTCCAAATACAAACATGATTTGTGGAAATAAGTAGATGTAGTTGTTTAATATTTTGAGTGACCCACTAAAGGCTGG</genome_strand>
        <mrna_strand>CCGTTACTTTCTTGCCAAACTTTACTTGTCAGGCTGAGAGGGAATTGCAACCATGGATTGCTAAAGATGATGAAGTTGGTCAGCAAATGTGGAGAATTAACCAACGTATAGTAAAATTGATCGCAGAACTGATAAGGAATCATGATATAGCGGAATCTTTGGTAATTCTGGCTAGTAACCCTGACCTCCTTTTACGGGCCACAGATGGGATGCTTGTCGATGGAGAAGCATGCACCTTACCACAGCTAGAG........................................................................................................................................................................................................CTTTTGGAAGTGACAGCTAGAGCAATTCAACCAGTACTTGACTGGGGAGAATCTGGACAATCAGTTGCTGATGGCTTCACAAACCTATTGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGTTTGCCTGCCACAGTTCGCTGTGTTTCTCATCCAAGTGCACATGTCCGTGCTCTCAGTACATCAGTTCTTCGTGACATTATGTATGCTGGTTCAGTAAAACCAAGTGCCAAACAAGCAGCAGATGTTAATGCCATCCATAATCCTGCTTATCAGTACCTTAGCATAAGCATCATTGACTGGAAAGCGGATATTGAGAAGTGTTTGATGTGTGAAGCTAGTAGCCGGCTTGAAAATGGAATGTCTGCTCAATTTCTTGATACTGCTGCTAGGGAATTAGGCTGTACTATATCAGTCTGAAAACTCACTTTTCTGGGGCATATATTAGGTCTCTCTGTACCATACCATACCTATCTTGTAAAAGTCAGTTAGAAAATATATTTTAGAGTCCTGTGATTGTTGTACAATGGCATGTAGATAGTTCCACTTGTTTTGTTTTTCATTTGGCACAGATTGTGTTTGTTGTACTTCCAAATACAAACATGATTTGTGGAAATAAGTAGATGTAGTTGTTTAATATTTTGAGTGACCCACTAAAGGCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E740068" ref_strand="+" ref_description="SGN-E740068 [LC19DG12]">
      <seq>ctctctttcttgccaaactttacttgtcaggctgagagggaattgcaaccatggattgctaaagatgatgaagttggtcagcaaatgtggagaattaaccaacgtatagtaaaattgatcgcagaactgataaggaatcatgatatagcggaatctttggtaattctggctagtaaccctgacctccttttacgggccacagatgggatgcttgtcgatggagaagcatgcaccttaccacagctagagcttttggaagtgacagctagagcaattcaaccagtacttgactggggagaatctggacaatcagttgctgatggcttcacaaacctattgaagtgtcgtttgcctgccacagttcgctgtgtttctcatccaagtgcacatgtccgtgctctcagtacatcagttcttcgtgacattatgtatgctggttcagtaaaaccaagtgccaaacaagcagcagatgttaatgccatccataatcctgcttatcagtaccttagcataagcatcattgactggaaagcggatattgagaagtgtttgatgtgtgaagctagtagccggcttgaaaatggaatgtctgctcaatttcttgatactgctgctagggaattaggctgtactatatcagtctgaaaactcacttttctggggcatatattaggtctctctgtaccataccatacctatcttgtaaaagtcagttagaaaatatattttagagtcctgtgattgttgtacaatggcatgtagatagttccacttgttttgtttttcatttggcacagattgtgtttgttgtacttccaaatacaaacatgatttgtggaaataagtagatgtagttgtttaatattttgagtgacccactaaaggctgggtcagctttagaattgaatttttcctatcatgtaatacccttcttaccttgtaatgtacattcagcaaattaaaagtcatctattcagttttgttttcctctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaacccggggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="42685" stop="45743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="42984" g_stop="43232" g_length="249"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="249" r_length="249" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43233" i_stop="43432" i_length="200">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43433" g_stop="43525" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="342" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43526" i_stop="44792" i_length="1267">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44793" g_stop="45442" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="992" r_length="650" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="993" polyA_stop="1022"/>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E740068" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>992</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E740068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="42984" e_stop="43232"/>
          <exon e_start="43433" e_stop="43525"/>
          <exon e_start="44793" e_stop="45442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACTTTCTTGCCAAACTTTACTTGTCAGGCTGAGAGGGAATTGCAACCATGGATTGCTAAAGATGATGAAGTTGGTCAGCAAATGTGGAGAATTAACCAACGTATAGTAAAATTGATCGCAGAACTGATAAGGAATCATGATATAGCGGAATCTTTGGTAATTCTGGCTAGTAACCCTGACCTCCTTTTACGGGCCACAGATGGGATGCTTGTCGATGGAGAAGCATGCACCTTACCACAGCTAGAGGTAATGACATATTTAGATTTCTGGTTTAGAGGTAACATCTTTTATACTACTTATTTCTCACCTGATGAATCTATGATTCAGAAAGCTACGACTTCCTTTATTTTCGTGAGTACTTGAATAGATGATTGATTCATCATATTCAATATCTTCTGTATTTTCTGATATATTTACATCCTTGCCCCTTAAAAAAAATTGAGCAGCTTTTGGAAGTGACAGCTAGAGCAATTCAACCAGTACTTGACTGGGGAGAATCTGGACAATCAGTTGCTGATGGCCTCACAAACCTATTGAAGGTGATACTCTTTTCTAGACTTGGTTCAAATTTGGGATCAGTAAGGGTATGCTTGGTATGAAGGAAGAGCTAGTGGGTATCTTACTTATTTTCTAGTGTTTAGTAAATAAGCTACAAAAATATAGTCCAAAAAGTATTTATATGTAATCTAGCAAAACACTATGGGGAGTGGAATGGTCAAGCGTTGGGGGTTGTGGGAAGGAAAGGGAAGAGTAAAAACTTGGAATGTCACTTGTGAAGCTTGTTTATCTTACTTCCATTAGGGAAGTTATTATTTTTCTCATTTTTTTGGGTAGTGAACTGCGAATATCACCATAACACCCGAAAATATTTACAAATAAAGAGCATCTAGCATCTCAGCTGTCTTCTATGAAGAGTAGAGCATGTAGACATCAGGAACCAGCAAAACAAAAAAAAACAGCATCTCAAAACTAATTCCAGAGTCAATGAATCAGCATGTGACGGTTCCTAGCCTTCCTGGAGCTGGAAACTAACTCTAGATTCCTTTTGTATGCGTCACAGCAAACTCAGTATTTACAGTTAATTTCCTAAAAATTTCCAATTCCTAGCTTGCTAAGTATAGTATATCAAAGCACCATACTTTAGCTGTTACAACTTCCTGCTTAAACTCTCTCCGCGTTTTCTTTTCATCCAGCTCAGGCTTCGTTTCGCAGTTTTCTGTGGTGAAGATTCACCAACTCAAGTAGCCAAAGCAGTATTCACAGTAGTTGTCCATTGACAGTCTGCAAATAGGTGCTGATGAGTCTCAGTTATCCCTCATCACATAAACAACATACATCATCATCAACTGGATGTGTTGTCTGCGCAGCCTTTCTTTGGTTAAAAGTTTGTCATGCTATGCCTACCAAACCATCAGTCTCTGGCTAGCCCACATGATTGAACTCCAAACCAGTTCAGCTTCAGACAATCTATTTAGATCACCAAGCATGGCATTGTAACTACTTGACATTGAGTATGAGCCATTAGGAGTTAGTTGGTAAATCCCCCCTTAATATCAGTGCACTATCAACCCTTTAAGAGAATTCAACTTCTTCCTTCTTCCAGTACAAAGTACCAACTGCAATCCTGAGGTGGAGTATGTTCCCAAATATCATCATTTTGACCAACCAAACATGAGAAAATTGGAAAACATCTCCATACCAACACCCCCTTAAGATGAAAAAAGTTTATCTTATATTCTTTAATTTTACTTCGCACTTAATGATAAGATAAACTTAGGTACAACACTAACTAGGTTTACATTGCAGTGTCGTTTGCCTGCCACAGTTCGCTGTGTTTCTCATCCAAGTGCACATGTCCGTGCTCTCAGTACATCAGTTCTTCGTGACATTATGTATGCTGGTTCAGTAAAACCAAGTGCCAAACAAGCAGCAGATGTTAATGCCATCCATAATCCTGCTTATCAGTACCTTAGCATAAGCATCATTGACTGGAAAGCGGATATTGAGAAGTGTTTGATGTGTGAAGCTAGTAGCCGGCTTGAAAATGGAATGTCTGCTCAATTTCTTGATACTGCTGCTAGGGAATTAGGCTGTACTATATCAGTCTGAAAACTCACTTTTCTGGGGCATATATTAGGTCTCTCTGTACCATACCATACCTATCTTGTAAAAGTCAGTTAGAAAATATATTTTAGAGTCCTGTGATTGTTGTACAATGGCATGTAGATAGTTCCACTTGTTTTGTTTTTCATTTGGCACAGATTGTGTTTGTTGTACTTCCAAATACAAACATGATTTGTGGAAATAAGTAGATGTAGTTGTTTAATATTTTGAGTGACCCACTAAAGGCTGGTTCAGCTTTAGAATTGAATTTTTCCTATCATGTAATAACCTTCTTACTTTGTATTGTACATTCAGCAGATAAAAAGTCATCTATTCAGTTTTGTTTTCCTCTC</genome_strand>
        <mrna_strand>CTCTCTTTCTTGCCAAACTTTACTTGTCAGGCTGAGAGGGAATTGCAACCATGGATTGCTAAAGATGATGAAGTTGGTCAGCAAATGTGGAGAATTAACCAACGTATAGTAAAATTGATCGCAGAACTGATAAGGAATCATGATATAGCGGAATCTTTGGTAATTCTGGCTAGTAACCCTGACCTCCTTTTACGGGCCACAGATGGGATGCTTGTCGATGGAGAAGCATGCACCTTACCACAGCTAGAG........................................................................................................................................................................................................CTTTTGGAAGTGACAGCTAGAGCAATTCAACCAGTACTTGACTGGGGAGAATCTGGACAATCAGTTGCTGATGGCTTCACAAACCTATTGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGTTTGCCTGCCACAGTTCGCTGTGTTTCTCATCCAAGTGCACATGTCCGTGCTCTCAGTACATCAGTTCTTCGTGACATTATGTATGCTGGTTCAGTAAAACCAAGTGCCAAACAAGCAGCAGATGTTAATGCCATCCATAATCCTGCTTATCAGTACCTTAGCATAAGCATCATTGACTGGAAAGCGGATATTGAGAAGTGTTTGATGTGTGAAGCTAGTAGCCGGCTTGAAAATGGAATGTCTGCTCAATTTCTTGATACTGCTGCTAGGGAATTAGGCTGTACTATATCAGTCTGAAAACTCACTTTTCTGGGGCATATATTAGGTCTCTCTGTACCATACCATACCTATCTTGTAAAAGTCAGTTAGAAAATATATTTTAGAGTCCTGTGATTGTTGTACAATGGCATGTAGATAGTTCCACTTGTTTTGTTTTTCATTTGGCACAGATTGTGTTTGTTGTACTTCCAAATACAAACATGATTTGTGGAAATAAGTAGATGTAGTTGTTTAATATTTTGAGTGACCCACTAAAGGCTGGGTCAGCTTTAGAATTGAATTTTTCCTATCATGTAATACCCTTCTTACCTTGTAATGTACATTCAGCAAATTAAAAGTCATCTATTCAGTTTTGTTTTCCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E347498" ref_strand="+" ref_description="SGN-E347498 [cTOF-33-J24]">
      <seq>tttacttgtcaggctgagagggaattgcaaccatggattgctaaagatgatgaagttggtcagcaaatgtggagaattaaccaacgtatagtaaaattgatcgcagaactgataaggaatcatgatatagcggaatctttggtaattctggctagtaaccctgacctccttttacgggccacagatgggatgcttgtcgatggagaagcatgcaccttaccacagctagagcttttggaagtgacagctagagcaattcaaccagtacttgactggggagaatctggacaatcagttgctgatggcctcacaaacctattgaagtgtcgtttgcctgccacagttcgctgtgtttctcatccaagtgcacatgtccgtgctctcagtacatcagttcttcgtgacattatgtatgctggttcagtaaaaccaagtgccaaacaagcagcagatgttaatgccatccataatcctgcttatcagtaccttagcataagcatcattgactggaaagcggatattgagaagtgtttgatgtgtgaagctagtagccggcttgaaaatggaatgtctgctcaatttcttgatactgctgctagggaattaggctgtactatatcagtctgaaaactcacttttctggggcatatattaggtctctctgtaccataccatacctatcttgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="42702" stop="45457"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43002" g_stop="43232" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43233" i_stop="43432" i_length="200">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43433" g_stop="43525" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="324" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43526" i_stop="44792" i_length="1267">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44793" g_stop="45157" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="689" r_length="365" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E347498" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347498" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43002" e_stop="43232"/>
          <exon e_start="43433" e_stop="43525"/>
          <exon e_start="44793" e_stop="45157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTACTTGTCAGGCTGAGAGGGAATTGCAACCATGGATTGCTAAAGATGATGAAGTTGGTCAGCAAATGTGGAGAATTAACCAACGTATAGTAAAATTGATCGCAGAACTGATAAGGAATCATGATATAGCGGAATCTTTGGTAATTCTGGCTAGTAACCCTGACCTCCTTTTACGGGCCACAGATGGGATGCTTGTCGATGGAGAAGCATGCACCTTACCACAGCTAGAGGTAATGACATATTTAGATTTCTGGTTTAGAGGTAACATCTTTTATACTACTTATTTCTCACCTGATGAATCTATGATTCAGAAAGCTACGACTTCCTTTATTTTCGTGAGTACTTGAATAGATGATTGATTCATCATATTCAATATCTTCTGTATTTTCTGATATATTTACATCCTTGCCCCTTAAAAAAAATTGAGCAGCTTTTGGAAGTGACAGCTAGAGCAATTCAACCAGTACTTGACTGGGGAGAATCTGGACAATCAGTTGCTGATGGCCTCACAAACCTATTGAAGGTGATACTCTTTTCTAGACTTGGTTCAAATTTGGGATCAGTAAGGGTATGCTTGGTATGAAGGAAGAGCTAGTGGGTATCTTACTTATTTTCTAGTGTTTAGTAAATAAGCTACAAAAATATAGTCCAAAAAGTATTTATATGTAATCTAGCAAAACACTATGGGGAGTGGAATGGTCAAGCGTTGGGGGTTGTGGGAAGGAAAGGGAAGAGTAAAAACTTGGAATGTCACTTGTGAAGCTTGTTTATCTTACTTCCATTAGGGAAGTTATTATTTTTCTCATTTTTTTGGGTAGTGAACTGCGAATATCACCATAACACCCGAAAATATTTACAAATAAAGAGCATCTAGCATCTCAGCTGTCTTCTATGAAGAGTAGAGCATGTAGACATCAGGAACCAGCAAAACAAAAAAAAACAGCATCTCAAAACTAATTCCAGAGTCAATGAATCAGCATGTGACGGTTCCTAGCCTTCCTGGAGCTGGAAACTAACTCTAGATTCCTTTTGTATGCGTCACAGCAAACTCAGTATTTACAGTTAATTTCCTAAAAATTTCCAATTCCTAGCTTGCTAAGTATAGTATATCAAAGCACCATACTTTAGCTGTTACAACTTCCTGCTTAAACTCTCTCCGCGTTTTCTTTTCATCCAGCTCAGGCTTCGTTTCGCAGTTTTCTGTGGTGAAGATTCACCAACTCAAGTAGCCAAAGCAGTATTCACAGTAGTTGTCCATTGACAGTCTGCAAATAGGTGCTGATGAGTCTCAGTTATCCCTCATCACATAAACAACATACATCATCATCAACTGGATGTGTTGTCTGCGCAGCCTTTCTTTGGTTAAAAGTTTGTCATGCTATGCCTACCAAACCATCAGTCTCTGGCTAGCCCACATGATTGAACTCCAAACCAGTTCAGCTTCAGACAATCTATTTAGATCACCAAGCATGGCATTGTAACTACTTGACATTGAGTATGAGCCATTAGGAGTTAGTTGGTAAATCCCCCCTTAATATCAGTGCACTATCAACCCTTTAAGAGAATTCAACTTCTTCCTTCTTCCAGTACAAAGTACCAACTGCAATCCTGAGGTGGAGTATGTTCCCAAATATCATCATTTTGACCAACCAAACATGAGAAAATTGGAAAACATCTCCATACCAACACCCCCTTAAGATGAAAAAAGTTTATCTTATATTCTTTAATTTTACTTCGCACTTAATGATAAGATAAACTTAGGTACAACACTAACTAGGTTTACATTGCAGTGTCGTTTGCCTGCCACAGTTCGCTGTGTTTCTCATCCAAGTGCACATGTCCGTGCTCTCAGTACATCAGTTCTTCGTGACATTATGTATGCTGGTTCAGTAAAACCAAGTGCCAAACAAGCAGCAGATGTTAATGCCATCCATAATCCTGCTTATCAGTACCTTAGCATAAGCATCATTGACTGGAAAGCGGATATTGAGAAGTGTTTGATGTGTGAAGCTAGTAGCCGGCTTGAAAATGGAATGTCTGCTCAATTTCTTGATACTGCTGCTAGGGAATTAGGCTGTACTATATCAGTCTGAAAACTCACTTTTCTGGGGCATATATTAGGTCTCTCTGTACCATACCATACCTATCTTGTAAA</genome_strand>
        <mrna_strand>TTTACTTGTCAGGCTGAGAGGGAATTGCAACCATGGATTGCTAAAGATGATGAAGTTGGTCAGCAAATGTGGAGAATTAACCAACGTATAGTAAAATTGATCGCAGAACTGATAAGGAATCATGATATAGCGGAATCTTTGGTAATTCTGGCTAGTAACCCTGACCTCCTTTTACGGGCCACAGATGGGATGCTTGTCGATGGAGAAGCATGCACCTTACCACAGCTAGAG........................................................................................................................................................................................................CTTTTGGAAGTGACAGCTAGAGCAATTCAACCAGTACTTGACTGGGGAGAATCTGGACAATCAGTTGCTGATGGCCTCACAAACCTATTGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGTTTGCCTGCCACAGTTCGCTGTGTTTCTCATCCAAGTGCACATGTCCGTGCTCTCAGTACATCAGTTCTTCGTGACATTATGTATGCTGGTTCAGTAAAACCAAGTGCCAAACAAGCAGCAGATGTTAATGCCATCCATAATCCTGCTTATCAGTACCTTAGCATAAGCATCATTGACTGGAAAGCGGATATTGAGAAGTGTTTGATGTGTGAAGCTAGTAGCCGGCTTGAAAATGGAATGTCTGCTCAATTTCTTGATACTGCTGCTAGGGAATTAGGCTGTACTATATCAGTCTGAAAACTCACTTTTCTGGGGCATATATTAGGTCTCTCTGTACCATACCATACCTATCTTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E268859" ref_strand="+" ref_description="SGN-E268859 [cLEM-4-N2]">
      <seq>tcaggctgagagggaattgcaaccatggattgctaaagatgatgaagttggtcagcaaatgtggagaattaaccaacgtatagtaaaattgatcgcagaactgataaggaatcatgatatagcggaatctttggtaattctggctagtaaccctgacctccttttacgggccacagatgggatgcttgtcgatggagaagcatgcaccttaccacagctagagcttttggaagtgacagctagagcaattcaaccagtacttgactggggagaatctggacaatcagttgctgatggcctcacaaacctattgaagtgtcgtttgcctgccacagttcgctgtgtttctcatccaagtgcacatgtccgtgctctcagtacatcagttcttcgtgacattatgtatgctggttcagtaaaaccaagtgccaaacaagcagcagatgttaatgccatccataatcctgcttatcagtaccttagcataagcatcattgactggaaagcggatattgagaagtgtttgatgtgtgaagctagtagccggcttgaaaatggaatgtctgctcaatttcttgatactgctgctagggaattaggctgtactatatcagtctgaaaactcacttttctggggcatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="42710" stop="45419"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43010" g_stop="43232" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="223" r_length="223" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43233" i_stop="43432" i_length="200">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43433" g_stop="43525" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="316" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43526" i_stop="44792" i_length="1267">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44793" g_stop="45119" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="643" r_length="327" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E268859" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E268859" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43010" e_stop="43232"/>
          <exon e_start="43433" e_stop="43525"/>
          <exon e_start="44793" e_stop="45119"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGCTGAGAGGGAATTGCAACCATGGATTGCTAAAGATGATGAAGTTGGTCAGCAAATGTGGAGAATTAACCAACGTATAGTAAAATTGATCGCAGAACTGATAAGGAATCATGATATAGCGGAATCTTTGGTAATTCTGGCTAGTAACCCTGACCTCCTTTTACGGGCCACAGATGGGATGCTTGTCGATGGAGAAGCATGCACCTTACCACAGCTAGAGGTAATGACATATTTAGATTTCTGGTTTAGAGGTAACATCTTTTATACTACTTATTTCTCACCTGATGAATCTATGATTCAGAAAGCTACGACTTCCTTTATTTTCGTGAGTACTTGAATAGATGATTGATTCATCATATTCAATATCTTCTGTATTTTCTGATATATTTACATCCTTGCCCCTTAAAAAAAATTGAGCAGCTTTTGGAAGTGACAGCTAGAGCAATTCAACCAGTACTTGACTGGGGAGAATCTGGACAATCAGTTGCTGATGGCCTCACAAACCTATTGAAGGTGATACTCTTTTCTAGACTTGGTTCAAATTTGGGATCAGTAAGGGTATGCTTGGTATGAAGGAAGAGCTAGTGGGTATCTTACTTATTTTCTAGTGTTTAGTAAATAAGCTACAAAAATATAGTCCAAAAAGTATTTATATGTAATCTAGCAAAACACTATGGGGAGTGGAATGGTCAAGCGTTGGGGGTTGTGGGAAGGAAAGGGAAGAGTAAAAACTTGGAATGTCACTTGTGAAGCTTGTTTATCTTACTTCCATTAGGGAAGTTATTATTTTTCTCATTTTTTTGGGTAGTGAACTGCGAATATCACCATAACACCCGAAAATATTTACAAATAAAGAGCATCTAGCATCTCAGCTGTCTTCTATGAAGAGTAGAGCATGTAGACATCAGGAACCAGCAAAACAAAAAAAAACAGCATCTCAAAACTAATTCCAGAGTCAATGAATCAGCATGTGACGGTTCCTAGCCTTCCTGGAGCTGGAAACTAACTCTAGATTCCTTTTGTATGCGTCACAGCAAACTCAGTATTTACAGTTAATTTCCTAAAAATTTCCAATTCCTAGCTTGCTAAGTATAGTATATCAAAGCACCATACTTTAGCTGTTACAACTTCCTGCTTAAACTCTCTCCGCGTTTTCTTTTCATCCAGCTCAGGCTTCGTTTCGCAGTTTTCTGTGGTGAAGATTCACCAACTCAAGTAGCCAAAGCAGTATTCACAGTAGTTGTCCATTGACAGTCTGCAAATAGGTGCTGATGAGTCTCAGTTATCCCTCATCACATAAACAACATACATCATCATCAACTGGATGTGTTGTCTGCGCAGCCTTTCTTTGGTTAAAAGTTTGTCATGCTATGCCTACCAAACCATCAGTCTCTGGCTAGCCCACATGATTGAACTCCAAACCAGTTCAGCTTCAGACAATCTATTTAGATCACCAAGCATGGCATTGTAACTACTTGACATTGAGTATGAGCCATTAGGAGTTAGTTGGTAAATCCCCCCTTAATATCAGTGCACTATCAACCCTTTAAGAGAATTCAACTTCTTCCTTCTTCCAGTACAAAGTACCAACTGCAATCCTGAGGTGGAGTATGTTCCCAAATATCATCATTTTGACCAACCAAACATGAGAAAATTGGAAAACATCTCCATACCAACACCCCCTTAAGATGAAAAAAGTTTATCTTATATTCTTTAATTTTACTTCGCACTTAATGATAAGATAAACTTAGGTACAACACTAACTAGGTTTACATTGCAGTGTCGTTTGCCTGCCACAGTTCGCTGTGTTTCTCATCCAAGTGCACATGTCCGTGCTCTCAGTACATCAGTTCTTCGTGACATTATGTATGCTGGTTCAGTAAAACCAAGTGCCAAACAAGCAGCAGATGTTAATGCCATCCATAATCCTGCTTATCAGTACCTTAGCATAAGCATCATTGACTGGAAAGCGGATATTGAGAAGTGTTTGATGTGTGAAGCTAGTAGCCGGCTTGAAAATGGAATGTCTGCTCAATTTCTTGATACTGCTGCTAGGGAATTAGGCTGTACTATATCAGTCTGAAAACTCACTTTTCTGGGGCATATA</genome_strand>
        <mrna_strand>TCAGGCTGAGAGGGAATTGCAACCATGGATTGCTAAAGATGATGAAGTTGGTCAGCAAATGTGGAGAATTAACCAACGTATAGTAAAATTGATCGCAGAACTGATAAGGAATCATGATATAGCGGAATCTTTGGTAATTCTGGCTAGTAACCCTGACCTCCTTTTACGGGCCACAGATGGGATGCTTGTCGATGGAGAAGCATGCACCTTACCACAGCTAGAG........................................................................................................................................................................................................CTTTTGGAAGTGACAGCTAGAGCAATTCAACCAGTACTTGACTGGGGAGAATCTGGACAATCAGTTGCTGATGGCCTCACAAACCTATTGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGTTTGCCTGCCACAGTTCGCTGTGTTTCTCATCCAAGTGCACATGTCCGTGCTCTCAGTACATCAGTTCTTCGTGACATTATGTATGCTGGTTCAGTAAAACCAAGTGCCAAACAAGCAGCAGATGTTAATGCCATCCATAATCCTGCTTATCAGTACCTTAGCATAAGCATCATTGACTGGAAAGCGGATATTGAGAAGTGTTTGATGTGTGAAGCTAGTAGCCGGCTTGAAAATGGAATGTCTGCTCAATTTCTTGATACTGCTGCTAGGGAATTAGGCTGTACTATATCAGTCTGAAAACTCACTTTTCTGGGGCATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E339087" ref_strand="+" ref_description="SGN-E339087 [cTOF-6-I21]">
      <seq>aggctgagagggaattgcaaccatggattgctaaagatgatgaagttggtcagcaaatgtggagaattaaccaacgtatagtaaaattgatcgcagaactgataaggaatcatgatatagcggaatctttggtaattctggctagtaaccctgacctccttttacgggccacagatgggatgcttgtcgatggagaagcatgcaccttaccacagctagagcttttggaagtgacagctagagcaattcaaccagtacttgactggggagaatctggacaatcagttgctgatggcctcacaaacctattgaagtgtcgtttgcctgccacagttcgctgtgtttctcatccaagtgcacatgtccgtgctctcagtacatcagttcttcgtgacattatgtatgctggttcagtaaaaccaagtgccaaacaagcagcagatgttaatgccatccataatcctgcttatcagtaccttagcataagcatcattgactggaaagcggatattgagaagtgtttgatgtgtgaagctagtagccggcttgaaaatggaatgtctgctcaatttcttgatactgctgctagggaattaggctgtactatatcagtctgaaaactcacttttctggggcatatattaggtctctctgtaccataccatacctatcttgtaaaagtcagttagaaatata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="42712" stop="45475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43012" g_stop="43232" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="221" r_length="221" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43233" i_stop="43432" i_length="200">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43433" g_stop="43525" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="314" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43526" i_stop="44792" i_length="1267">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44793" g_stop="45175" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="696" r_length="382" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E339087" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E339087" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43012" e_stop="43232"/>
          <exon e_start="43433" e_stop="43525"/>
          <exon e_start="44793" e_stop="45175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCTGAGAGGGAATTGCAACCATGGATTGCTAAAGATGATGAAGTTGGTCAGCAAATGTGGAGAATTAACCAACGTATAGTAAAATTGATCGCAGAACTGATAAGGAATCATGATATAGCGGAATCTTTGGTAATTCTGGCTAGTAACCCTGACCTCCTTTTACGGGCCACAGATGGGATGCTTGTCGATGGAGAAGCATGCACCTTACCACAGCTAGAGGTAATGACATATTTAGATTTCTGGTTTAGAGGTAACATCTTTTATACTACTTATTTCTCACCTGATGAATCTATGATTCAGAAAGCTACGACTTCCTTTATTTTCGTGAGTACTTGAATAGATGATTGATTCATCATATTCAATATCTTCTGTATTTTCTGATATATTTACATCCTTGCCCCTTAAAAAAAATTGAGCAGCTTTTGGAAGTGACAGCTAGAGCAATTCAACCAGTACTTGACTGGGGAGAATCTGGACAATCAGTTGCTGATGGCCTCACAAACCTATTGAAGGTGATACTCTTTTCTAGACTTGGTTCAAATTTGGGATCAGTAAGGGTATGCTTGGTATGAAGGAAGAGCTAGTGGGTATCTTACTTATTTTCTAGTGTTTAGTAAATAAGCTACAAAAATATAGTCCAAAAAGTATTTATATGTAATCTAGCAAAACACTATGGGGAGTGGAATGGTCAAGCGTTGGGGGTTGTGGGAAGGAAAGGGAAGAGTAAAAACTTGGAATGTCACTTGTGAAGCTTGTTTATCTTACTTCCATTAGGGAAGTTATTATTTTTCTCATTTTTTTGGGTAGTGAACTGCGAATATCACCATAACACCCGAAAATATTTACAAATAAAGAGCATCTAGCATCTCAGCTGTCTTCTATGAAGAGTAGAGCATGTAGACATCAGGAACCAGCAAAACAAAAAAAAACAGCATCTCAAAACTAATTCCAGAGTCAATGAATCAGCATGTGACGGTTCCTAGCCTTCCTGGAGCTGGAAACTAACTCTAGATTCCTTTTGTATGCGTCACAGCAAACTCAGTATTTACAGTTAATTTCCTAAAAATTTCCAATTCCTAGCTTGCTAAGTATAGTATATCAAAGCACCATACTTTAGCTGTTACAACTTCCTGCTTAAACTCTCTCCGCGTTTTCTTTTCATCCAGCTCAGGCTTCGTTTCGCAGTTTTCTGTGGTGAAGATTCACCAACTCAAGTAGCCAAAGCAGTATTCACAGTAGTTGTCCATTGACAGTCTGCAAATAGGTGCTGATGAGTCTCAGTTATCCCTCATCACATAAACAACATACATCATCATCAACTGGATGTGTTGTCTGCGCAGCCTTTCTTTGGTTAAAAGTTTGTCATGCTATGCCTACCAAACCATCAGTCTCTGGCTAGCCCACATGATTGAACTCCAAACCAGTTCAGCTTCAGACAATCTATTTAGATCACCAAGCATGGCATTGTAACTACTTGACATTGAGTATGAGCCATTAGGAGTTAGTTGGTAAATCCCCCCTTAATATCAGTGCACTATCAACCCTTTAAGAGAATTCAACTTCTTCCTTCTTCCAGTACAAAGTACCAACTGCAATCCTGAGGTGGAGTATGTTCCCAAATATCATCATTTTGACCAACCAAACATGAGAAAATTGGAAAACATCTCCATACCAACACCCCCTTAAGATGAAAAAAGTTTATCTTATATTCTTTAATTTTACTTCGCACTTAATGATAAGATAAACTTAGGTACAACACTAACTAGGTTTACATTGCAGTGTCGTTTGCCTGCCACAGTTCGCTGTGTTTCTCATCCAAGTGCACATGTCCGTGCTCTCAGTACATCAGTTCTTCGTGACATTATGTATGCTGGTTCAGTAAAACCAAGTGCCAAACAAGCAGCAGATGTTAATGCCATCCATAATCCTGCTTATCAGTACCTTAGCATAAGCATCATTGACTGGAAAGCGGATATTGAGAAGTGTTTGATGTGTGAAGCTAGTAGCCGGCTTGAAAATGGAATGTCTGCTCAATTTCTTGATACTGCTGCTAGGGAATTAGGCTGTACTATATCAGTCTGAAAACTCACTTTTCTGGGGCATATATTAGGTCTCTCTGTACCATACCATACCTATCTTGTAAAAGTCAGTTAGAAAATATA</genome_strand>
        <mrna_strand>AGGCTGAGAGGGAATTGCAACCATGGATTGCTAAAGATGATGAAGTTGGTCAGCAAATGTGGAGAATTAACCAACGTATAGTAAAATTGATCGCAGAACTGATAAGGAATCATGATATAGCGGAATCTTTGGTAATTCTGGCTAGTAACCCTGACCTCCTTTTACGGGCCACAGATGGGATGCTTGTCGATGGAGAAGCATGCACCTTACCACAGCTAGAG........................................................................................................................................................................................................CTTTTGGAAGTGACAGCTAGAGCAATTCAACCAGTACTTGACTGGGGAGAATCTGGACAATCAGTTGCTGATGGCCTCACAAACCTATTGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGTTTGCCTGCCACAGTTCGCTGTGTTTCTCATCCAAGTGCACATGTCCGTGCTCTCAGTACATCAGTTCTTCGTGACATTATGTATGCTGGTTCAGTAAAACCAAGTGCCAAACAAGCAGCAGATGTTAATGCCATCCATAATCCTGCTTATCAGTACCTTAGCATAAGCATCATTGACTGGAAAGCGGATATTGAGAAGTGTTTGATGTGTGAAGCTAGTAGCCGGCTTGAAAATGGAATGTCTGCTCAATTTCTTGATACTGCTGCTAGGGAATTAGGCTGTACTATATCAGTCTGAAAACTCACTTTTCTGGGGCATATATTAGGTCTCTCTGTACCATACCATACCTATCTTGTAAAAGTCAGTTAG-AAATATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E338718" ref_strand="+" ref_description="SGN-E338718 [cTOE-21-I17]">
      <seq>agagggaattgcaaccatggattgctaaagatgatgaagttggtcagcaaatgtggagaattaaccaacgtatagtaaaattgatcgcagaactgataaggaatcatgatatagcggaatctttggtaattctggctagtaaccctgacctccttttacgggccacagatgggatgcttgtcgatggagaagcatgcaccttaccacagctagagcttttggaagtgacagctagagcaattcaaccagtacttgactggggagaatctggac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="42718" stop="43790"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43018" g_stop="43232" g_length="215"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="215" r_length="215" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43233" i_stop="43432" i_length="200">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43433" g_stop="43490" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="216" r_stop="273" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E338718" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>273</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E338718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43018" e_stop="43232"/>
          <exon e_start="43433" e_stop="43490"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAGGGAATTGCAACCATGGATTGCTAAAGATGATGAAGTTGGTCAGCAAATGTGGAGAATTAACCAACGTATAGTAAAATTGATCGCAGAACTGATAAGGAATCATGATATAGCGGAATCTTTGGTAATTCTGGCTAGTAACCCTGACCTCCTTTTACGGGCCACAGATGGGATGCTTGTCGATGGAGAAGCATGCACCTTACCACAGCTAGAGGTAATGACATATTTAGATTTCTGGTTTAGAGGTAACATCTTTTATACTACTTATTTCTCACCTGATGAATCTATGATTCAGAAAGCTACGACTTCCTTTATTTTCGTGAGTACTTGAATAGATGATTGATTCATCATATTCAATATCTTCTGTATTTTCTGATATATTTACATCCTTGCCCCTTAAAAAAAATTGAGCAGCTTTTGGAAGTGACAGCTAGAGCAATTCAACCAGTACTTGACTGGGGAGAATCTGGAC</genome_strand>
        <mrna_strand>AGAGGGAATTGCAACCATGGATTGCTAAAGATGATGAAGTTGGTCAGCAAATGTGGAGAATTAACCAACGTATAGTAAAATTGATCGCAGAACTGATAAGGAATCATGATATAGCGGAATCTTTGGTAATTCTGGCTAGTAACCCTGACCTCCTTTTACGGGCCACAGATGGGATGCTTGTCGATGGAGAAGCATGCACCTTACCACAGCTAGAG........................................................................................................................................................................................................CTTTTGGAAGTGACAGCTAGAGCAATTCAACCAGTACTTGACTGGGGAGAATCTGGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E302331" ref_strand="+" ref_description="SGN-E302331 [cLEW-19-N20]">
      <seq>gaattgcaaccatggattgctaaagatgatgaagttggtcagcaaatgtggagaattaaccaacgtatagtaaaattgatcgcagaactgataaggaatcatgatatagcggaatctttggtaattctggctagtaaccctgacctccttttacgggccacagatgggatgcttgtcgatggagaagcatgcaccttaccacagctagagcttttggaagtgacagctagagcaattcaaccagtacttgactggggagaatctggacaatcagttgctgatggcctcacaaacctattgaagtgtcgtttgcctgccacagttcgctgtgtttctcatccaagtgcacatgtccgtgctctcagtacatcagttcttcgtgacattatgtatgctggttcagtaaaaccaagtgccaaacaagcagcagatgttaatgccatccataatcctgcttatcagtaccttagcataagcatcattgactggaaagcggatattgagaagtgtttgatgtgtgaagctagtagccggcttgaaaatggaatgtctgctcaatttcttgatactgctgctagggaattaggctgtactatatcagtctgaaaactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="42723" stop="45402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43023" g_stop="43232" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="210" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43233" i_stop="43432" i_length="200">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43433" g_stop="43525" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="303" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43526" i_stop="44792" i_length="1267">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44793" g_stop="45102" g_length="310"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="613" r_length="310" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E302331" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43023" e_stop="43232"/>
          <exon e_start="43433" e_stop="43525"/>
          <exon e_start="44793" e_stop="45102"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATTGCAACCATGGATTGCTAAAGATGATGAAGTTGGTCAGCAAATGTGGAGAATTAACCAACGTATAGTAAAATTGATCGCAGAACTGATAAGGAATCATGATATAGCGGAATCTTTGGTAATTCTGGCTAGTAACCCTGACCTCCTTTTACGGGCCACAGATGGGATGCTTGTCGATGGAGAAGCATGCACCTTACCACAGCTAGAGGTAATGACATATTTAGATTTCTGGTTTAGAGGTAACATCTTTTATACTACTTATTTCTCACCTGATGAATCTATGATTCAGAAAGCTACGACTTCCTTTATTTTCGTGAGTACTTGAATAGATGATTGATTCATCATATTCAATATCTTCTGTATTTTCTGATATATTTACATCCTTGCCCCTTAAAAAAAATTGAGCAGCTTTTGGAAGTGACAGCTAGAGCAATTCAACCAGTACTTGACTGGGGAGAATCTGGACAATCAGTTGCTGATGGCCTCACAAACCTATTGAAGGTGATACTCTTTTCTAGACTTGGTTCAAATTTGGGATCAGTAAGGGTATGCTTGGTATGAAGGAAGAGCTAGTGGGTATCTTACTTATTTTCTAGTGTTTAGTAAATAAGCTACAAAAATATAGTCCAAAAAGTATTTATATGTAATCTAGCAAAACACTATGGGGAGTGGAATGGTCAAGCGTTGGGGGTTGTGGGAAGGAAAGGGAAGAGTAAAAACTTGGAATGTCACTTGTGAAGCTTGTTTATCTTACTTCCATTAGGGAAGTTATTATTTTTCTCATTTTTTTGGGTAGTGAACTGCGAATATCACCATAACACCCGAAAATATTTACAAATAAAGAGCATCTAGCATCTCAGCTGTCTTCTATGAAGAGTAGAGCATGTAGACATCAGGAACCAGCAAAACAAAAAAAAACAGCATCTCAAAACTAATTCCAGAGTCAATGAATCAGCATGTGACGGTTCCTAGCCTTCCTGGAGCTGGAAACTAACTCTAGATTCCTTTTGTATGCGTCACAGCAAACTCAGTATTTACAGTTAATTTCCTAAAAATTTCCAATTCCTAGCTTGCTAAGTATAGTATATCAAAGCACCATACTTTAGCTGTTACAACTTCCTGCTTAAACTCTCTCCGCGTTTTCTTTTCATCCAGCTCAGGCTTCGTTTCGCAGTTTTCTGTGGTGAAGATTCACCAACTCAAGTAGCCAAAGCAGTATTCACAGTAGTTGTCCATTGACAGTCTGCAAATAGGTGCTGATGAGTCTCAGTTATCCCTCATCACATAAACAACATACATCATCATCAACTGGATGTGTTGTCTGCGCAGCCTTTCTTTGGTTAAAAGTTTGTCATGCTATGCCTACCAAACCATCAGTCTCTGGCTAGCCCACATGATTGAACTCCAAACCAGTTCAGCTTCAGACAATCTATTTAGATCACCAAGCATGGCATTGTAACTACTTGACATTGAGTATGAGCCATTAGGAGTTAGTTGGTAAATCCCCCCTTAATATCAGTGCACTATCAACCCTTTAAGAGAATTCAACTTCTTCCTTCTTCCAGTACAAAGTACCAACTGCAATCCTGAGGTGGAGTATGTTCCCAAATATCATCATTTTGACCAACCAAACATGAGAAAATTGGAAAACATCTCCATACCAACACCCCCTTAAGATGAAAAAAGTTTATCTTATATTCTTTAATTTTACTTCGCACTTAATGATAAGATAAACTTAGGTACAACACTAACTAGGTTTACATTGCAGTGTCGTTTGCCTGCCACAGTTCGCTGTGTTTCTCATCCAAGTGCACATGTCCGTGCTCTCAGTACATCAGTTCTTCGTGACATTATGTATGCTGGTTCAGTAAAACCAAGTGCCAAACAAGCAGCAGATGTTAATGCCATCCATAATCCTGCTTATCAGTACCTTAGCATAAGCATCATTGACTGGAAAGCGGATATTGAGAAGTGTTTGATGTGTGAAGCTAGTAGCCGGCTTGAAAATGGAATGTCTGCTCAATTTCTTGATACTGCTGCTAGGGAATTAGGCTGTACTATATCAGTCTGAAAACTCA</genome_strand>
        <mrna_strand>GAATTGCAACCATGGATTGCTAAAGATGATGAAGTTGGTCAGCAAATGTGGAGAATTAACCAACGTATAGTAAAATTGATCGCAGAACTGATAAGGAATCATGATATAGCGGAATCTTTGGTAATTCTGGCTAGTAACCCTGACCTCCTTTTACGGGCCACAGATGGGATGCTTGTCGATGGAGAAGCATGCACCTTACCACAGCTAGAG........................................................................................................................................................................................................CTTTTGGAAGTGACAGCTAGAGCAATTCAACCAGTACTTGACTGGGGAGAATCTGGACAATCAGTTGCTGATGGCCTCACAAACCTATTGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGTTTGCCTGCCACAGTTCGCTGTGTTTCTCATCCAAGTGCACATGTCCGTGCTCTCAGTACATCAGTTCTTCGTGACATTATGTATGCTGGTTCAGTAAAACCAAGTGCCAAACAAGCAGCAGATGTTAATGCCATCCATAATCCTGCTTATCAGTACCTTAGCATAAGCATCATTGACTGGAAAGCGGATATTGAGAAGTGTTTGATGTGTGAAGCTAGTAGCCGGCTTGAAAATGGAATGTCTGCTCAATTTCTTGATACTGCTGCTAGGGAATTAGGCTGTACTATATCAGTCTGAAAACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E331619" ref_strand="+" ref_description="SGN-E331619 [cTOD-7-G5]">
      <seq>tgcaaccatggattgctaaagatgatgaagttggtcagcaaatgtggagaattaaccaacgtatagtaaaattgatcgcagaactgataaggaatcatgatatagcggaatctttggtaattctggctagtaaccctgacctccttttacgggccacagatgggatgcttgtcgatggagaagcatgcaccttaccacagctagaggtaatgacatatttagatttctggtttagaggtaacatcttttatactacttatttctcacctgatgaatctatgattcagaaagctacgacttcctttattttcgtgagtacttgaatagatgattgattcatcatattcaatatcttctgtattttctgatatatttacatccttgccccttaaaaaaaattgagcagcttttggaagtgacagctagagcaattcaaccagtacttgactggggagaatctggacaatcagttgctgatggcctcacaaacctattgaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="42727" stop="43825"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43027" g_stop="43525" g_length="499"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="499" r_length="499" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E331619" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331619" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43027" e_stop="43525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAACCATGGATTGCTAAAGATGATGAAGTTGGTCAGCAAATGTGGAGAATTAACCAACGTATAGTAAAATTGATCGCAGAACTGATAAGGAATCATGATATAGCGGAATCTTTGGTAATTCTGGCTAGTAACCCTGACCTCCTTTTACGGGCCACAGATGGGATGCTTGTCGATGGAGAAGCATGCACCTTACCACAGCTAGAGGTAATGACATATTTAGATTTCTGGTTTAGAGGTAACATCTTTTATACTACTTATTTCTCACCTGATGAATCTATGATTCAGAAAGCTACGACTTCCTTTATTTTCGTGAGTACTTGAATAGATGATTGATTCATCATATTCAATATCTTCTGTATTTTCTGATATATTTACATCCTTGCCCCTTAAAAAAAATTGAGCAGCTTTTGGAAGTGACAGCTAGAGCAATTCAACCAGTACTTGACTGGGGAGAATCTGGACAATCAGTTGCTGATGGCCTCACAAACCTATTGAAG</genome_strand>
        <mrna_strand>TGCAACCATGGATTGCTAAAGATGATGAAGTTGGTCAGCAAATGTGGAGAATTAACCAACGTATAGTAAAATTGATCGCAGAACTGATAAGGAATCATGATATAGCGGAATCTTTGGTAATTCTGGCTAGTAACCCTGACCTCCTTTTACGGGCCACAGATGGGATGCTTGTCGATGGAGAAGCATGCACCTTACCACAGCTAGAGGTAATGACATATTTAGATTTCTGGTTTAGAGGTAACATCTTTTATACTACTTATTTCTCACCTGATGAATCTATGATTCAGAAAGCTACGACTTCCTTTATTTTCGTGAGTACTTGAATAGATGATTGATTCATCATATTCAATATCTTCTGTATTTTCTGATATATTTACATCCTTGCCCCTTAAAAAAAATTGAGCAGCTTTTGGAAGTGACAGCTAGAGCAATTCAACCAGTACTTGACTGGGGAGAATCTGGACAATCAGTTGCTGATGGCCTCACAAACCTATTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E541751" ref_strand="-" ref_description="SGN-E541751 [TUS-62-L8]">
      <seq>acagatgggatgcttgtcgatgangaagcatgcaccttaccacagctagagcttttggaagtgacagctagagcaattcaaccagtacttgactggggagaatctggacaatcagttgctgatggcctcacaaacctattgaagtgtcgtttgcctgccacagttcgctgtgtttctcatccaagtgcacatgtccgtgctctcagtacatcagttcttcgtgacattatgtatgctggttcagtaaaaccaagtgccaaacaagcagcagatgttaatgccatccataatcctgcttatcagtaccttagcataagcatcattgactggaaagcggatattgagaagtgtttgatgtgtgaagctagtagccggcttgaaaatggaatgtctgctcaatttcttgatactgctgctagggaattaggctgtactatatcagtctgaaaactcacttttctggggcatatattaggtctctctgtaccataccatacctatcttgtaaaagtcagttagaaaatatattttagagtcctgtgattgttgtacaatggcatgtagatagttccacttgttttgtttttcatttggcacagattgtgtttgttgtacttccaaatacaaacatgatttgtggaaataagtagatgtagttgtttaatattttgagtgacccactaaaggctggttcagctttagaattgaatttttcctatcatgtaataaccttcttactttgtattgtacattcagcagataaaaagtcatctattcagttttgttttcctctcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="42882" stop="45743"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43182" g_stop="43232" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43233" i_stop="43432" i_length="200">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="43433" g_stop="43525" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="144" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="43526" i_stop="44792" i_length="1267">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="44793" g_stop="45442" g_length="650"/>
          <reference_exon_boundary r_type="cDNA" r_start="145" r_stop="794" r_length="650" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="795" polyA_stop="804"/>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E541751" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>794</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E541751" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43182" e_stop="43232"/>
          <exon e_start="43433" e_stop="43525"/>
          <exon e_start="44793" e_stop="45442"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAGATGGGATGCTTGTCGATGGAGAAGCATGCACCTTACCACAGCTAGAGGTAATGACATATTTAGATTTCTGGTTTAGAGGTAACATCTTTTATACTACTTATTTCTCACCTGATGAATCTATGATTCAGAAAGCTACGACTTCCTTTATTTTCGTGAGTACTTGAATAGATGATTGATTCATCATATTCAATATCTTCTGTATTTTCTGATATATTTACATCCTTGCCCCTTAAAAAAAATTGAGCAGCTTTTGGAAGTGACAGCTAGAGCAATTCAACCAGTACTTGACTGGGGAGAATCTGGACAATCAGTTGCTGATGGCCTCACAAACCTATTGAAGGTGATACTCTTTTCTAGACTTGGTTCAAATTTGGGATCAGTAAGGGTATGCTTGGTATGAAGGAAGAGCTAGTGGGTATCTTACTTATTTTCTAGTGTTTAGTAAATAAGCTACAAAAATATAGTCCAAAAAGTATTTATATGTAATCTAGCAAAACACTATGGGGAGTGGAATGGTCAAGCGTTGGGGGTTGTGGGAAGGAAAGGGAAGAGTAAAAACTTGGAATGTCACTTGTGAAGCTTGTTTATCTTACTTCCATTAGGGAAGTTATTATTTTTCTCATTTTTTTGGGTAGTGAACTGCGAATATCACCATAACACCCGAAAATATTTACAAATAAAGAGCATCTAGCATCTCAGCTGTCTTCTATGAAGAGTAGAGCATGTAGACATCAGGAACCAGCAAAACAAAAAAAAACAGCATCTCAAAACTAATTCCAGAGTCAATGAATCAGCATGTGACGGTTCCTAGCCTTCCTGGAGCTGGAAACTAACTCTAGATTCCTTTTGTATGCGTCACAGCAAACTCAGTATTTACAGTTAATTTCCTAAAAATTTCCAATTCCTAGCTTGCTAAGTATAGTATATCAAAGCACCATACTTTAGCTGTTACAACTTCCTGCTTAAACTCTCTCCGCGTTTTCTTTTCATCCAGCTCAGGCTTCGTTTCGCAGTTTTCTGTGGTGAAGATTCACCAACTCAAGTAGCCAAAGCAGTATTCACAGTAGTTGTCCATTGACAGTCTGCAAATAGGTGCTGATGAGTCTCAGTTATCCCTCATCACATAAACAACATACATCATCATCAACTGGATGTGTTGTCTGCGCAGCCTTTCTTTGGTTAAAAGTTTGTCATGCTATGCCTACCAAACCATCAGTCTCTGGCTAGCCCACATGATTGAACTCCAAACCAGTTCAGCTTCAGACAATCTATTTAGATCACCAAGCATGGCATTGTAACTACTTGACATTGAGTATGAGCCATTAGGAGTTAGTTGGTAAATCCCCCCTTAATATCAGTGCACTATCAACCCTTTAAGAGAATTCAACTTCTTCCTTCTTCCAGTACAAAGTACCAACTGCAATCCTGAGGTGGAGTATGTTCCCAAATATCATCATTTTGACCAACCAAACATGAGAAAATTGGAAAACATCTCCATACCAACACCCCCTTAAGATGAAAAAAGTTTATCTTATATTCTTTAATTTTACTTCGCACTTAATGATAAGATAAACTTAGGTACAACACTAACTAGGTTTACATTGCAGTGTCGTTTGCCTGCCACAGTTCGCTGTGTTTCTCATCCAAGTGCACATGTCCGTGCTCTCAGTACATCAGTTCTTCGTGACATTATGTATGCTGGTTCAGTAAAACCAAGTGCCAAACAAGCAGCAGATGTTAATGCCATCCATAATCCTGCTTATCAGTACCTTAGCATAAGCATCATTGACTGGAAAGCGGATATTGAGAAGTGTTTGATGTGTGAAGCTAGTAGCCGGCTTGAAAATGGAATGTCTGCTCAATTTCTTGATACTGCTGCTAGGGAATTAGGCTGTACTATATCAGTCTGAAAACTCACTTTTCTGGGGCATATATTAGGTCTCTCTGTACCATACCATACCTATCTTGTAAAAGTCAGTTAGAAAATATATTTTAGAGTCCTGTGATTGTTGTACAATGGCATGTAGATAGTTCCACTTGTTTTGTTTTTCATTTGGCACAGATTGTGTTTGTTGTACTTCCAAATACAAACATGATTTGTGGAAATAAGTAGATGTAGTTGTTTAATATTTTGAGTGACCCACTAAAGGCTGGTTCAGCTTTAGAATTGAATTTTTCCTATCATGTAATAACCTTCTTACTTTGTATTGTACATTCAGCAGATAAAAAGTCATCTATTCAGTTTTGTTTTCCTCTC</genome_strand>
        <mrna_strand>ACAGATGGGATGCTTGTCGATGANGAAGCATGCACCTTACCACAGCTAGAG........................................................................................................................................................................................................CTTTTGGAAGTGACAGCTAGAGCAATTCAACCAGTACTTGACTGGGGAGAATCTGGACAATCAGTTGCTGATGGCCTCACAAACCTATTGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGTTTGCCTGCCACAGTTCGCTGTGTTTCTCATCCAAGTGCACATGTCCGTGCTCTCAGTACATCAGTTCTTCGTGACATTATGTATGCTGGTTCAGTAAAACCAAGTGCCAAACAAGCAGCAGATGTTAATGCCATCCATAATCCTGCTTATCAGTACCTTAGCATAAGCATCATTGACTGGAAAGCGGATATTGAGAAGTGTTTGATGTGTGAAGCTAGTAGCCGGCTTGAAAATGGAATGTCTGCTCAATTTCTTGATACTGCTGCTAGGGAATTAGGCTGTACTATATCAGTCTGAAAACTCACTTTTCTGGGGCATATATTAGGTCTCTCTGTACCATACCATACCTATCTTGTAAAAGTCAGTTAGAAAATATATTTTAGAGTCCTGTGATTGTTGTACAATGGCATGTAGATAGTTCCACTTGTTTTGTTTTTCATTTGGCACAGATTGTGTTTGTTGTACTTCCAAATACAAACATGATTTGTGGAAATAAGTAGATGTAGTTGTTTAATATTTTGAGTGACCCACTAAAGGCTGGTTCAGCTTTAGAATTGAATTTTTCCTATCATGTAATAACCTTCTTACTTTGTATTGTACATTCAGCAGATAAAAAGTCATCTATTCAGTTTTGTTTTCCTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E257961" ref_strand="+" ref_description="SGN-E257961 [cLEG-48-K16]">
      <seq>ttggaagtgacagctagagcaattcaaccagtacttgactggggagaatctggacaatcagttgctgatggcctcacaaacctattgaagtgtcgtttgcctgccacagttcgctgtgtttctcatccaagtgcacatgtccgtgctctcagtacatcagttcttcgtgacattatgtatgctggttcagtaaaaccaagtgccaaacaagcagcagatgttaatgccatccataatcctgcttatcagtaccttagcataagcatcattgactggaaagcggatattgagaagtgtttgatgtgtgaagctagtagccggcttgaaaatggaatgtctgctcaatttcttgatactgctgctaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="43136" stop="45370"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43436" g_stop="43525" g_length="90"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="90" r_length="90" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43526" i_stop="44792" i_length="1267">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44793" g_stop="45070" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="368" r_length="278" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E257961" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257961" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43436" e_stop="43525"/>
          <exon e_start="44793" e_stop="45070"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGAAGTGACAGCTAGAGCAATTCAACCAGTACTTGACTGGGGAGAATCTGGACAATCAGTTGCTGATGGCCTCACAAACCTATTGAAGGTGATACTCTTTTCTAGACTTGGTTCAAATTTGGGATCAGTAAGGGTATGCTTGGTATGAAGGAAGAGCTAGTGGGTATCTTACTTATTTTCTAGTGTTTAGTAAATAAGCTACAAAAATATAGTCCAAAAAGTATTTATATGTAATCTAGCAAAACACTATGGGGAGTGGAATGGTCAAGCGTTGGGGGTTGTGGGAAGGAAAGGGAAGAGTAAAAACTTGGAATGTCACTTGTGAAGCTTGTTTATCTTACTTCCATTAGGGAAGTTATTATTTTTCTCATTTTTTTGGGTAGTGAACTGCGAATATCACCATAACACCCGAAAATATTTACAAATAAAGAGCATCTAGCATCTCAGCTGTCTTCTATGAAGAGTAGAGCATGTAGACATCAGGAACCAGCAAAACAAAAAAAAACAGCATCTCAAAACTAATTCCAGAGTCAATGAATCAGCATGTGACGGTTCCTAGCCTTCCTGGAGCTGGAAACTAACTCTAGATTCCTTTTGTATGCGTCACAGCAAACTCAGTATTTACAGTTAATTTCCTAAAAATTTCCAATTCCTAGCTTGCTAAGTATAGTATATCAAAGCACCATACTTTAGCTGTTACAACTTCCTGCTTAAACTCTCTCCGCGTTTTCTTTTCATCCAGCTCAGGCTTCGTTTCGCAGTTTTCTGTGGTGAAGATTCACCAACTCAAGTAGCCAAAGCAGTATTCACAGTAGTTGTCCATTGACAGTCTGCAAATAGGTGCTGATGAGTCTCAGTTATCCCTCATCACATAAACAACATACATCATCATCAACTGGATGTGTTGTCTGCGCAGCCTTTCTTTGGTTAAAAGTTTGTCATGCTATGCCTACCAAACCATCAGTCTCTGGCTAGCCCACATGATTGAACTCCAAACCAGTTCAGCTTCAGACAATCTATTTAGATCACCAAGCATGGCATTGTAACTACTTGACATTGAGTATGAGCCATTAGGAGTTAGTTGGTAAATCCCCCCTTAATATCAGTGCACTATCAACCCTTTAAGAGAATTCAACTTCTTCCTTCTTCCAGTACAAAGTACCAACTGCAATCCTGAGGTGGAGTATGTTCCCAAATATCATCATTTTGACCAACCAAACATGAGAAAATTGGAAAACATCTCCATACCAACACCCCCTTAAGATGAAAAAAGTTTATCTTATATTCTTTAATTTTACTTCGCACTTAATGATAAGATAAACTTAGGTACAACACTAACTAGGTTTACATTGCAGTGTCGTTTGCCTGCCACAGTTCGCTGTGTTTCTCATCCAAGTGCACATGTCCGTGCTCTCAGTACATCAGTTCTTCGTGACATTATGTATGCTGGTTCAGTAAAACCAAGTGCCAAACAAGCAGCAGATGTTAATGCCATCCATAATCCTGCTTATCAGTACCTTAGCATAAGCATCATTGACTGGAAAGCGGATATTGAGAAGTGTTTGATGTGTGAAGCTAGTAGCCGGCTTGAAAATGGAATGTCTGCTCAATTTCTTGATACTGCTGCTAGGGA</genome_strand>
        <mrna_strand>TTGGAAGTGACAGCTAGAGCAATTCAACCAGTACTTGACTGGGGAGAATCTGGACAATCAGTTGCTGATGGCCTCACAAACCTATTGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGTTTGCCTGCCACAGTTCGCTGTGTTTCTCATCCAAGTGCACATGTCCGTGCTCTCAGTACATCAGTTCTTCGTGACATTATGTATGCTGGTTCAGTAAAACCAAGTGCCAAACAAGCAGCAGATGTTAATGCCATCCATAATCCTGCTTATCAGTACCTTAGCATAAGCATCATTGACTGGAAAGCGGATATTGAGAAGTGTTTGATGTGTGAAGCTAGTAGCCGGCTTGAAAATGGAATGTCTGCTCAATTTCTTGATACTGCTGCTAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E373739" ref_strand="-" ref_description="SGN-E373739 [TUS-31-C2]">
      <seq>ggacaatcagttgctgatggcctcacaaacctattgaagtgtcgtttgcctgccacagttcgctgtgtttctcatccaagtgcacatgtccgtgctctcagtacatcagttcttcgtgacattatgtatgctggttcagtaaaaccaagtgccaaacaagcagcagatgttaatgccatccataatcctgcttatcagtaccttagcataagcatcattgactggaaagcggatattgagaagtgtttgatgtgtgaagctagtagccggcttgaaaatggaatgtctgctcaatttcttgatactgctgctagggaattaggctgtactatatcagtctgaaaactcacttttctggggcatatattaggtctctctgtaccataccatacctatcttgtaaaagtcagttagaaaatatattttagagtcctgtgattgttgtacaatggcatgtagatagttccacttgttttgtttttcatttggcacagattgtgtttgttgtacttccaaatacaaacatgatttgtggaaataagtagatgtagttgtttaatattttgagtgacccactaaaggctggttcagctttagaattgaatttttcctatcatgtaataaccttcttactttgtattgtacattcagcagataaaaagtcatctattcagtttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="43187" stop="45730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43487" g_stop="43525" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43526" i_stop="44792" i_length="1267">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44793" g_stop="45431" g_length="639"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="678" r_length="639" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E373739" ref_strand="-">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>678</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E373739" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="43487" e_stop="43525"/>
          <exon e_start="44793" e_stop="45431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACAATCAGTTGCTGATGGCCTCACAAACCTATTGAAGGTGATACTCTTTTCTAGACTTGGTTCAAATTTGGGATCAGTAAGGGTATGCTTGGTATGAAGGAAGAGCTAGTGGGTATCTTACTTATTTTCTAGTGTTTAGTAAATAAGCTACAAAAATATAGTCCAAAAAGTATTTATATGTAATCTAGCAAAACACTATGGGGAGTGGAATGGTCAAGCGTTGGGGGTTGTGGGAAGGAAAGGGAAGAGTAAAAACTTGGAATGTCACTTGTGAAGCTTGTTTATCTTACTTCCATTAGGGAAGTTATTATTTTTCTCATTTTTTTGGGTAGTGAACTGCGAATATCACCATAACACCCGAAAATATTTACAAATAAAGAGCATCTAGCATCTCAGCTGTCTTCTATGAAGAGTAGAGCATGTAGACATCAGGAACCAGCAAAACAAAAAAAAACAGCATCTCAAAACTAATTCCAGAGTCAATGAATCAGCATGTGACGGTTCCTAGCCTTCCTGGAGCTGGAAACTAACTCTAGATTCCTTTTGTATGCGTCACAGCAAACTCAGTATTTACAGTTAATTTCCTAAAAATTTCCAATTCCTAGCTTGCTAAGTATAGTATATCAAAGCACCATACTTTAGCTGTTACAACTTCCTGCTTAAACTCTCTCCGCGTTTTCTTTTCATCCAGCTCAGGCTTCGTTTCGCAGTTTTCTGTGGTGAAGATTCACCAACTCAAGTAGCCAAAGCAGTATTCACAGTAGTTGTCCATTGACAGTCTGCAAATAGGTGCTGATGAGTCTCAGTTATCCCTCATCACATAAACAACATACATCATCATCAACTGGATGTGTTGTCTGCGCAGCCTTTCTTTGGTTAAAAGTTTGTCATGCTATGCCTACCAAACCATCAGTCTCTGGCTAGCCCACATGATTGAACTCCAAACCAGTTCAGCTTCAGACAATCTATTTAGATCACCAAGCATGGCATTGTAACTACTTGACATTGAGTATGAGCCATTAGGAGTTAGTTGGTAAATCCCCCCTTAATATCAGTGCACTATCAACCCTTTAAGAGAATTCAACTTCTTCCTTCTTCCAGTACAAAGTACCAACTGCAATCCTGAGGTGGAGTATGTTCCCAAATATCATCATTTTGACCAACCAAACATGAGAAAATTGGAAAACATCTCCATACCAACACCCCCTTAAGATGAAAAAAGTTTATCTTATATTCTTTAATTTTACTTCGCACTTAATGATAAGATAAACTTAGGTACAACACTAACTAGGTTTACATTGCAGTGTCGTTTGCCTGCCACAGTTCGCTGTGTTTCTCATCCAAGTGCACATGTCCGTGCTCTCAGTACATCAGTTCTTCGTGACATTATGTATGCTGGTTCAGTAAAACCAAGTGCCAAACAAGCAGCAGATGTTAATGCCATCCATAATCCTGCTTATCAGTACCTTAGCATAAGCATCATTGACTGGAAAGCGGATATTGAGAAGTGTTTGATGTGTGAAGCTAGTAGCCGGCTTGAAAATGGAATGTCTGCTCAATTTCTTGATACTGCTGCTAGGGAATTAGGCTGTACTATATCAGTCTGAAAACTCACTTTTCTGGGGCATATATTAGGTCTCTCTGTACCATACCATACCTATCTTGTAAAAGTCAGTTAGAAAATATATTTTAGAGTCCTGTGATTGTTGTACAATGGCATGTAGATAGTTCCACTTGTTTTGTTTTTCATTTGGCACAGATTGTGTTTGTTGTACTTCCAAATACAAACATGATTTGTGGAAATAAGTAGATGTAGTTGTTTAATATTTTGAGTGACCCACTAAAGGCTGGTTCAGCTTTAGAATTGAATTTTTCCTATCATGTAATAACCTTCTTACTTTGTATTGTACATTCAGCAGATAAAAAGTCATCTATTCAGTTTT</genome_strand>
        <mrna_strand>GGACAATCAGTTGCTGATGGCCTCACAAACCTATTGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGTTTGCCTGCCACAGTTCGCTGTGTTTCTCATCCAAGTGCACATGTCCGTGCTCTCAGTACATCAGTTCTTCGTGACATTATGTATGCTGGTTCAGTAAAACCAAGTGCCAAACAAGCAGCAGATGTTAATGCCATCCATAATCCTGCTTATCAGTACCTTAGCATAAGCATCATTGACTGGAAAGCGGATATTGAGAAGTGTTTGATGTGTGAAGCTAGTAGCCGGCTTGAAAATGGAATGTCTGCTCAATTTCTTGATACTGCTGCTAGGGAATTAGGCTGTACTATATCAGTCTGAAAACTCACTTTTCTGGGGCATATATTAGGTCTCTCTGTACCATACCATACCTATCTTGTAAAAGTCAGTTAGAAAATATATTTTAGAGTCCTGTGATTGTTGTACAATGGCATGTAGATAGTTCCACTTGTTTTGTTTTTCATTTGGCACAGATTGTGTTTGTTGTACTTCCAAATACAAACATGATTTGTGGAAATAAGTAGATGTAGTTGTTTAATATTTTGAGTGACCCACTAAAGGCTGGTTCAGCTTTAGAATTGAATTTTTCCTATCATGTAATAACCTTCTTACTTTGTATTGTACATTCAGCAGATAAAAAGTCATCTATTCAGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E241534" ref_strand="+" ref_description="SGN-E241534 [cLED-28-H2]">
      <seq>acaatcagttgctgatggcctcacaaacctattgaagtgtcgtttgcctgccacagttcgctgtgtttctcatccaagtgcacatgtccgtgctctcagtacatcagttcttcgtgacattatgtatgctggttcagtaaaaccaagtgccaaacaagcagcagatgttaatgccatccataatcctgcttatcagtaccttagcataagcatcattgactggaaagcggatattgagaagtgtttgatgtgtgaagctagtagccggcttgaaaatggaatgtctgctcaatttcttgatactgctgctagggaattaggctgtactatatcagtctgaaaactcacttttctggggcatatattaggtctctctgtaccataccatacctatcttgtaaaagtcagttagaaaatatattttagagtcctgtgattgttgtacaatggcatgtagatagttccacttgttttgtttttcatttggcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="43189" stop="45545"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="43489" g_stop="43525" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="43526" i_stop="44792" i_length="1267">
            <donor d_prob="0.998" d_score="0.00"/>
            <acceptor a_prob="0.862" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="44793" g_stop="45245" g_length="453"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="490" r_length="453" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E241534" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>490</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E241534" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="43489" e_stop="43525"/>
          <exon e_start="44793" e_stop="45245"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAATCAGTTGCTGATGGCCTCACAAACCTATTGAAGGTGATACTCTTTTCTAGACTTGGTTCAAATTTGGGATCAGTAAGGGTATGCTTGGTATGAAGGAAGAGCTAGTGGGTATCTTACTTATTTTCTAGTGTTTAGTAAATAAGCTACAAAAATATAGTCCAAAAAGTATTTATATGTAATCTAGCAAAACACTATGGGGAGTGGAATGGTCAAGCGTTGGGGGTTGTGGGAAGGAAAGGGAAGAGTAAAAACTTGGAATGTCACTTGTGAAGCTTGTTTATCTTACTTCCATTAGGGAAGTTATTATTTTTCTCATTTTTTTGGGTAGTGAACTGCGAATATCACCATAACACCCGAAAATATTTACAAATAAAGAGCATCTAGCATCTCAGCTGTCTTCTATGAAGAGTAGAGCATGTAGACATCAGGAACCAGCAAAACAAAAAAAAACAGCATCTCAAAACTAATTCCAGAGTCAATGAATCAGCATGTGACGGTTCCTAGCCTTCCTGGAGCTGGAAACTAACTCTAGATTCCTTTTGTATGCGTCACAGCAAACTCAGTATTTACAGTTAATTTCCTAAAAATTTCCAATTCCTAGCTTGCTAAGTATAGTATATCAAAGCACCATACTTTAGCTGTTACAACTTCCTGCTTAAACTCTCTCCGCGTTTTCTTTTCATCCAGCTCAGGCTTCGTTTCGCAGTTTTCTGTGGTGAAGATTCACCAACTCAAGTAGCCAAAGCAGTATTCACAGTAGTTGTCCATTGACAGTCTGCAAATAGGTGCTGATGAGTCTCAGTTATCCCTCATCACATAAACAACATACATCATCATCAACTGGATGTGTTGTCTGCGCAGCCTTTCTTTGGTTAAAAGTTTGTCATGCTATGCCTACCAAACCATCAGTCTCTGGCTAGCCCACATGATTGAACTCCAAACCAGTTCAGCTTCAGACAATCTATTTAGATCACCAAGCATGGCATTGTAACTACTTGACATTGAGTATGAGCCATTAGGAGTTAGTTGGTAAATCCCCCCTTAATATCAGTGCACTATCAACCCTTTAAGAGAATTCAACTTCTTCCTTCTTCCAGTACAAAGTACCAACTGCAATCCTGAGGTGGAGTATGTTCCCAAATATCATCATTTTGACCAACCAAACATGAGAAAATTGGAAAACATCTCCATACCAACACCCCCTTAAGATGAAAAAAGTTTATCTTATATTCTTTAATTTTACTTCGCACTTAATGATAAGATAAACTTAGGTACAACACTAACTAGGTTTACATTGCAGTGTCGTTTGCCTGCCACAGTTCGCTGTGTTTCTCATCCAAGTGCACATGTCCGTGCTCTCAGTACATCAGTTCTTCGTGACATTATGTATGCTGGTTCAGTAAAACCAAGTGCCAAACAAGCAGCAGATGTTAATGCCATCCATAATCCTGCTTATCAGTACCTTAGCATAAGCATCATTGACTGGAAAGCGGATATTGAGAAGTGTTTGATGTGTGAAGCTAGTAGCCGGCTTGAAAATGGAATGTCTGCTCAATTTCTTGATACTGCTGCTAGGGAATTAGGCTGTACTATATCAGTCTGAAAACTCACTTTTCTGGGGCATATATTAGGTCTCTCTGTACCATACCATACCTATCTTGTAAAAGTCAGTTAGAAAATATATTTTAGAGTCCTGTGATTGTTGTACAATGGCATGTAGATAGTTCCACTTGTTTTGTTTTTCATTTGGCAC</genome_strand>
        <mrna_strand>ACAATCAGTTGCTGATGGCCTCACAAACCTATTGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGTTTGCCTGCCACAGTTCGCTGTGTTTCTCATCCAAGTGCACATGTCCGTGCTCTCAGTACATCAGTTCTTCGTGACATTATGTATGCTGGTTCAGTAAAACCAAGTGCCAAACAAGCAGCAGATGTTAATGCCATCCATAATCCTGCTTATCAGTACCTTAGCATAAGCATCATTGACTGGAAAGCGGATATTGAGAAGTGTTTGATGTGTGAAGCTAGTAGCCGGCTTGAAAATGGAATGTCTGCTCAATTTCTTGATACTGCTGCTAGGGAATTAGGCTGTACTATATCAGTCTGAAAACTCACTTTTCTGGGGCATATATTAGGTCTCTCTGTACCATACCATACCTATCTTGTAAAAGTCAGTTAGAAAATATATTTTAGAGTCCTGTGATTGTTGTACAATGGCATGTAGATAGTTCCACTTGTTTTGTTTTTCATTTGGCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E340699" ref_strand="+" ref_description="SGN-E340699 [cTOF-1-F16]">
      <seq>tcctgcttatcagtaccttagcataagcatcattgactggaaagcggatattgagaagtgtttgatgtgtgaagctagtagccggcttgaaaatggaatgtctgctcaatttcttgatactgctgctagggaattaggctgtactatatcagtctgaaaactcacttttctggggcatatattaggtctctctgtaccataccatacctatcttgtaaaagtcagttagaaaatatattttagagtcctgtgattgttgtacaatggcatgtagatagttccacttgttttgtttttcatttggcacagattgtgtttgttgtacttccaaatacaaacatgatttgtggaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="44639" stop="45599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="44939" g_stop="45301" g_length="363"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="363" r_length="363" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E340699" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>363</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E340699" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="44939" e_stop="45301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTGCTTATCAGTACCTTAGCATAAGCATCATTGACTGGAAAGCGGATATTGAGAAGTGTTTGATGTGTGAAGCTAGTAGCCGGCTTGAAAATGGAATGTCTGCTCAATTTCTTGATACTGCTGCTAGGGAATTAGGCTGTACTATATCAGTCTGAAAACTCACTTTTCTGGGGCATATATTAGGTCTCTCTGTACCATACCATACCTATCTTGTAAAAGTCAGTTAGAAAATATATTTTAGAGTCCTGTGATTGTTGTACAATGGCATGTAGATAGTTCCACTTGTTTTGTTTTTCATTTGGCACAGATTGTGTTTGTTGTACTTCCAAATACAAACATGATTTGTGGAAATAAGTAGATG</genome_strand>
        <mrna_strand>TCCTGCTTATCAGTACCTTAGCATAAGCATCATTGACTGGAAAGCGGATATTGAGAAGTGTTTGATGTGTGAAGCTAGTAGCCGGCTTGAAAATGGAATGTCTGCTCAATTTCTTGATACTGCTGCTAGGGAATTAGGCTGTACTATATCAGTCTGAAAACTCACTTTTCTGGGGCATATATTAGGTCTCTCTGTACCATACCATACCTATCTTGTAAAAGTCAGTTAGAAAATATATTTTAGAGTCCTGTGATTGTTGTACAATGGCATGTAGATAGTTCCACTTGTTTTGTTTTTCATTTGGCACAGATTGTGTTTGTTGTACTTCCAAATACAAACATGATTTGTGGAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E228382" ref_strand="+" ref_description="SGN-E228382 [cLED-3-P19]">
      <seq>tgaaaactcacttttctggggcatatattaggtctctctgtaccataccatacctatcttgtaaaagtcagttagaaaatatattttagagtcctgtgattgttgtacaatggcatgtagatagttccacttgttttgtttttcatttggcacagattgtgtttgttgtacttccaaatacaaacatgatttgtggaaataagtagatgtagttgtttaatattttgagtgacccactaaaggctggttcagctttagaattgaatttttcctatcatgtaataaccttcttactttgtattgtacattcagcagataaaaagtcatctattcagtttaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="44793" stop="45730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45093" g_stop="45431" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="339" r_length="339" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="340" polyA_stop="350"/>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E228382" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>339</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E228382" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45093" e_stop="45431"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAAAACTCACTTTTCTGGGGCATATATTAGGTCTCTCTGTACCATACCATACCTATCTTGTAAAAGTCAGTTAGAAAATATATTTTAGAGTCCTGTGATTGTTGTACAATGGCATGTAGATAGTTCCACTTGTTTTGTTTTTCATTTGGCACAGATTGTGTTTGTTGTACTTCCAAATACAAACATGATTTGTGGAAATAAGTAGATGTAGTTGTTTAATATTTTGAGTGACCCACTAAAGGCTGGTTCAGCTTTAGAATTGAATTTTTCCTATCATGTAATAACCTTCTTACTTTGTATTGTACATTCAGCAGATAAAAAGTCATCTATTCAGTTTT</genome_strand>
        <mrna_strand>TGAAAACTCACTTTTCTGGGGCATATATTAGGTCTCTCTGTACCATACCATACCTATCTTGTAAAAGTCAGTTAGAAAATATATTTTAGAGTCCTGTGATTGTTGTACAATGGCATGTAGATAGTTCCACTTGTTTTGTTTTTCATTTGGCACAGATTGTGTTTGTTGTACTTCCAAATACAAACATGATTTGTGGAAATAAGTAGATGTAGTTGTTTAATATTTTGAGTGACCCACTAAAGGCTGGTTCAGCTTTAGAATTGAATTTTTCCTATCATGTAATAACCTTCTTACTTTGTATTGTACATTCAGCAGATAAAAAGTCATCTATTCAGTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E375485" ref_strand="-" ref_description="SGN-E375485 [TUS-34-L6]">
      <seq>taaaagtcagttagaaaatatattttagagtcctgtgattgttgtacaatggcatgtagatagttccacttgttttgtttttcatttggcacagattgtgtttgttgtacttccaaatacaaacatgatttgtggaaataagtagatgtagttgtttaatattttgagtgacccactaaaggctggttcagctttagaattgaatttttcctatcatgtaataaccttcttactttgtattgtacattcagcagataaaaagtcatctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="44854" stop="45722"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45154" g_stop="45421" g_length="268"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="268" r_length="268" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="269" polyA_stop="280"/>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E375485" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>268</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375485" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="45154" e_stop="45421"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAGTCAGTTAGAAAATATATTTTAGAGTCCTGTGATTGTTGTACAATGGCATGTAGATAGTTCCACTTGTTTTGTTTTTCATTTGGCACAGATTGTGTTTGTTGTACTTCCAAATACAAACATGATTTGTGGAAATAAGTAGATGTAGTTGTTTAATATTTTGAGTGACCCACTAAAGGCTGGTTCAGCTTTAGAATTGAATTTTTCCTATCATGTAATAACCTTCTTACTTTGTATTGTACATTCAGCAGATAAAAAGTCATCT</genome_strand>
        <mrna_strand>TAAAAGTCAGTTAGAAAATATATTTTAGAGTCCTGTGATTGTTGTACAATGGCATGTAGATAGTTCCACTTGTTTTGTTTTTCATTTGGCACAGATTGTGTTTGTTGTACTTCCAAATACAAACATGATTTGTGGAAATAAGTAGATGTAGTTGTTTAATATTTTGAGTGACCCACTAAAGGCTGGTTCAGCTTTAGAATTGAATTTTTCCTATCATGTAATAACCTTCTTACTTTGTATTGTACATTCAGCAGATAAAAAGTCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E711986" ref_strand="+" ref_description="SGN-E711986 [FB03CC08]">
      <seq>cattaggcaccaatctcagccagttcatatgcattggaagattcactgctgtttcattccaagttatcggtcatatgaaaacaatactcgttttggtactgggattcttgttctttgggaaagaaggtctcaacatacaagtggtagttggcatgctcatagcagtttgcggaatgatctggtatggaaatgcctcatctaaacctggtgggaaagagcgtcgtagccattcaatcaagcatggatcagattcgtcacaagccgatgataaggtgtaagattttctagcattgaagctgaaacagaaaagataagcaaaaaaacaaaaaaacagaactttttatagtcagctgactctacatacacagctccttcgatcgaattagatttttcttcatcttataattcatctttttgataatataacattagtaagaaaagattgagacttgggtatagagcttggtttctttcgttctccttttctatttgatcaataatttatagtgagtgatgagttttttctctctcaaggaactattggtcgacattaaaggtgtgtttggttggaagaaaaatattttttcaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="-" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="47234" stop="46047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46934" g_stop="46348" g_length="587"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="587" r_length="587" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="588" polyA_stop="616"/>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="-" ref_id="SGN-E711986" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>587</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E711986" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46934" e_stop="46348"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATAGGCACCAATCTCAGCCAGTTCATATGCATTGGAAGATTCACTGCTGTTTCATTCCAAGTTATCGGTCATATGAAAACAATACTCGTTTTGGTACTGGGATTCTTGTTCTTTGGGAAAGAAGGTCTCAACATACAAGTGGTAGTTGGCATGCTCATAGCAGTTTGCGGAATGATCTGGTATGGAAATGCCTCATCTAAACCTGGTGGGAAAGAGCGTCGTAGCCATTCAATCAAGCATGGATCAGATTCGTCACAAGCCGATGATAAGGTGTAAGATTTTCTAGCATTGAAGCTGAAACAGAAAAGATAAGCAAAAAAACAAAAAAACAGAACCTTTTATAGTCAGCTGACTCTACATACACAGCTCCTTCGATCGAATTAGATTTTTCTTTATCTTATAATTCATCTTTTTGATAATATAACATTAGTAAGAAAAGATTGAGACTTGGGTATAGAGCTTGGTTTCTTTCGTTCTCCTTTTCTATTTGATCAATAATTTATAGTGAGTGATGAGTTTTTTCTCTCTCAAGGAACTATTGGTCGACATTAAAGGTGTGTTTGGTTGGAAGAAAAATATTTTTTC</genome_strand>
        <mrna_strand>CATTAGGCACCAATCTCAGCCAGTTCATATGCATTGGAAGATTCACTGCTGTTTCATTCCAAGTTATCGGTCATATGAAAACAATACTCGTTTTGGTACTGGGATTCTTGTTCTTTGGGAAAGAAGGTCTCAACATACAAGTGGTAGTTGGCATGCTCATAGCAGTTTGCGGAATGATCTGGTATGGAAATGCCTCATCTAAACCTGGTGGGAAAGAGCGTCGTAGCCATTCAATCAAGCATGGATCAGATTCGTCACAAGCCGATGATAAGGTGTAAGATTTTCTAGCATTGAAGCTGAAACAGAAAAGATAAGCAAAAAAACAAAAAAACAGAACTTTTTATAGTCAGCTGACTCTACATACACAGCTCCTTCGATCGAATTAGATTTTTCTTCATCTTATAATTCATCTTTTTGATAATATAACATTAGTAAGAAAAGATTGAGACTTGGGTATAGAGCTTGGTTTCTTTCGTTCTCCTTTTCTATTTGATCAATAATTTATAGTGAGTGATGAGTTTTTTCTCTCTCAAGGAACTATTGGTCGACATTAAAGGTGTGTTTGGTTGGAAGAAAAATATTTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E351144" ref_strand="+" ref_description="SGN-E351144 [cTOS-6-P4]">
      <seq>ctgctctacaacagtattatgttcattaccttcaaaggaaatactcccttagttctttcaatttgctgggacatactgcaccagttcaggctggaagtctgctgctattaggtccgcttgtggattattggttgaccaacaagaggattgatcactttgacttcacattttcatcatcggcattcatcattctttcatgcactatagcaataggcaccaatctcagccagttcatatgcattggaagattcactgctgtttcattccaagttatcggtcatatgaaaacaatactcgttttggtactgggattcttgttctttgggaaagaaggtctcaacatacaagtggtagttggcatgctcatagcagtttgcggaatgatctggtatggaaatgcctcatctaaacctggtgggaaagagcgtcgtagccattcaatcaagcatggatcagattcgtcacaagccgatgataaggtgtaagattttctagcattgaagctgaaacagaaaagataagccaaaaaaccaaaaaacagaaccttttatagtcagctgactctacatacacagctccttcgatcgaattagatttttcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="-" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="49147" stop="46239"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="48847" g_stop="48831" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="48830" i_stop="47818" i_length="1013">
            <donor d_prob="0.520" d_score="0.00"/>
            <acceptor a_prob="0.663" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="47817" g_stop="47656" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="179" r_length="162" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="47655" i_stop="46963" i_length="693">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46962" g_stop="46539" g_length="424"/>
          <reference_exon_boundary r_type="cDNA" r_start="180" r_stop="603" r_length="424" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="-" ref_id="SGN-E351144" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351144" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="48847" e_stop="48831"/>
          <exon e_start="47817" e_stop="47656"/>
          <exon e_start="46962" e_stop="46539"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGCTCTACAACAGTATGTAAGTTGTCTTGGCAATTTATTAACTTATGCCATCTTGGAAAGCTTGATTTGATCAGTTGAATAACACACCATTACACCGAGGGAATAGATGCACCATCAATAAGGTGCAATTTGATTACCGGATTAGTAATCCAGGTATTATAGCACAAGGGTCCAGTTGAGTGTTTTAGGTACTCTGTTAGAGTAACAGTTTGGAGATCCTATGATTCAAATCCAGTTATTGTACTAGGCGTGAGCCCATCTATTCTTGTCTTAGTGCGAGCACAGTTTACTTGGAAACTTTATTTGTGGTTGTAGCAGGCAGTTTAGTGGATTGGTTGAGTTGCATGCCACTTAAGTTGGAGACAACAATCGTGAAAAAGTAGTTATGCAAGGATTCTAATAATTCAAGATTAGTTATATTAAATAGTGTACTTGTAAACTTTTTAGTTTTAGAAAACCTAAAGGTTTTGTAAGAATTCCTAACTTTGTTTTTATGCAAGTTTTGAATTTTGTTTATGTTTAAACATAAACCTCCCTACATTAAAGGCATTTTTGTGCTTTGCTGCTCTTATCGAGGTATTGCTTCTGTGCACATTTTATTTAACATTATATACCCTATAGAACATAAGTGGGCTCTTGCTGTCCTGCTAGATATGCTGGTATTGCGTCTGATGAGTTTTATATAGGAAGCCAAAGGTTGTATTAGCAACACAAAGTTGTAATAGTAATATAGAGTTTTATATGGGAAATCACACTCTATCTTAGTCAATTTTTTTGGACAAGTAAAATGAAACGTTTTATAGATAATGCAAAGTTTGTTAGGAAACAACAAGACCTAAGCCTCATCTAGAAATTGAAAACTTGTTTTTTGGAAAATTCTGTACAACTGGTCACTTCTGTGCTTGACTTGGATTTGAAAAAAATAATATTTACTCCTATTTTTTAGTCTTCTAGTTTTCTGAAGCTCCTCTTTGAATGTAATTGCACTTGGTCAAAAACTGATATCTGCACTTGGTTTTGTATATGCAGTATGTTCATTACCTTCAAAGGAAATACTCCCTTAGTTCTTTCAATTTGCTGGGACATACTGCACCAGTTCAGGCTGGAAGTCTGCTGCTATTAGGTCCGCTTGTGGATTATTGGTTGACCAACAAGAGGATTGATCACTTTGACTTCACATTTTCATCATCGGTTAGTACCTCACTCTTGAATTGTTGTTTGATTTGTTAATTCTTCATGAAAAATGGTAGTGAAAAGTCATTCTTATGTTTGCAAGTTGCAAGCTTGAACTTCTTAGGTATATCTTTTGTCTGATACTTTGATGTATGTTTATATTATTTCACTGTCAAAAAGTTGTGAATCTGCAATATTGATGAATTACGACTTTAAGATGCACCTGTCAAATCACAAATGCTAATTGTTATATGGGATTGCTTATTTCGACCCACCAAAAAAGTTGTACGTATAGGTTCCAGATTTTGCTACTGCTAAATAAAAAGCTGATATAGAACATTCAGACCAATGTTCATCTCATGCAACACTGTTATTTTCAAGAGAGTAGGATTTAGTGCTTACCAATGTATTTTTGAAACCTGTGTCATGTGATCAGAGTGTATAAGTTAATTTTTGCCATCAATTGAAAAAAATATCTTATTTCCCCTGCCTATGTTGCATCTCTGTTTTTTTGTAAGTGGATGATGGACCTCGTTTGAATAGAAAACTTTGTGCTCTGGGTTGGCAAAGAAAGTTTAGTGGAGATTAGACCACCAGAGGAAATACTCTCAGTTATGAACAATATTCTGTCTGTATGGGTTTTGACTTTTGAATCCATGCTTTGTTCTATACATGGTACCTTACACTAATATAATAACTCTTTCTCTGCAGGCATTCATCATTCTTTCATGCACTATAGCAATAGGCACCAATCTCAGCCAGTTCATATGCATTGGAAGATTCACTGCTGTTTCATTCCAAGTTATCGGTCATATGAAAACAATACTCGTTTTGGTACTGGGATTCTTGTTCTTTGGGAAAGAAGGTCTCAACATACAAGTGGTAGTTGGCATGCTCATAGCAGTTTGCGGAATGATCTGGTATGGAAATGCCTCATCTAAACCTGGTGGGAAAGAGCGTCGTAGCCATTCAATCAAGCATGGATCAGATTCGTCACAAGCCGATGATAAGGTGTAAGATTTTCTAGCATTGAAGCTGAAACAGAAAAGATAAGCAAAAAAACAAAAAAACAGAACCTTTTATAGTCAGCTGACTCTACATACACAGCTCCTTCGATCGAATTAGATTTTTCTTT</genome_strand>
        <mrna_strand>CTGCTCTACAACAGTAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTTCATTACCTTCAAAGGAAATACTCCCTTAGTTCTTTCAATTTGCTGGGACATACTGCACCAGTTCAGGCTGGAAGTCTGCTGCTATTAGGTCCGCTTGTGGATTATTGGTTGACCAACAAGAGGATTGATCACTTTGACTTCACATTTTCATCATCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTCATCATTCTTTCATGCACTATAGCAATAGGCACCAATCTCAGCCAGTTCATATGCATTGGAAGATTCACTGCTGTTTCATTCCAAGTTATCGGTCATATGAAAACAATACTCGTTTTGGTACTGGGATTCTTGTTCTTTGGGAAAGAAGGTCTCAACATACAAGTGGTAGTTGGCATGCTCATAGCAGTTTGCGGAATGATCTGGTATGGAAATGCCTCATCTAAACCTGGTGGGAAAGAGCGTCGTAGCCATTCAATCAAGCATGGATCAGATTCGTCACAAGCCGATGATAAGGTGTAAGATTTTCTAGCATTGAAGCTGAAACAGAAAAGATAAGCCAAAAAACCAAAAAACAGAACCTTTTATAGTCAGCTGACTCTACATACACAGCTCCTTCGATCGAATTAGATTTTTCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E348519" ref_strand="+" ref_description="SGN-E348519 [cTOF-30-H19]">
      <seq>ttctccttacttctcaactggtgggaagagcaaataaaagatttggaaattttgatgtagaagtgtgaatgcttctatttgctgcttggagggtaaaacttgtttctggcagcaaaaaataaaggcaaatggctccttcaagcaaggctaataagaaggctgcaggtgatgtggctgcatggatgttcaatgtggtcacttcagttggaatcattattgttaacaaagccttaatggctaactatgggtttttctttgcaacaacattaacggggatgcattttgttacaacaactttgatgacgattgttctaaggtggctcgggatcatccaagcttctcacttaccccttctagatcttctaaaatttgtactgtgtgcaaacttctctattgttgggatgaacatcagtttgatgtggaactcggtgggattctaccagattgcaaagttgagtatgatccctgtctcctgcttactagaagtttcctttgacaagatccgctattcaagggatacaaagctgagcattgttgtggtactcctaggggttgctgtatgtacagttaccggacgtgagtgttaataccaaaggcttcattgctgcctttgtagctgtatggagcactgctctacaacagtattatgttcattaccttcaaaggaaatactcccttagttctttcaatttgctgggacatactgcaccagttcaggctgggaagtctgctgctat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="-" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="50355" stop="47427"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50035" g_stop="49798" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="258" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49797" i_stop="49300" i_length="498">
            <donor d_prob="0.702" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="49299" g_stop="49115" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="443" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49114" i_stop="49032" i_length="83">
            <donor d_prob="0.670" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49031" g_stop="48831" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="444" r_stop="645" r_length="202" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48830" i_stop="47818" i_length="1013">
            <donor d_prob="0.520" d_score="1.00"/>
            <acceptor a_prob="0.663" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="47817" g_stop="47727" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="737" r_length="92" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="-" ref_id="SGN-E348519" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>715</cumulative_length_of_scored_exons>
        <coverage percentage="0.970" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E348519" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50035" e_stop="49798"/>
          <exon e_start="49299" e_stop="49115"/>
          <exon e_start="49031" e_stop="48831"/>
          <exon e_start="47817" e_stop="47727"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGGAAGAGCAAATAAAAGATTTGGAAATTTTGATGTAGAAGTGTGAATGCTTCTATTTGCTGCTTGGAGGGTAAAACTTGTTTCTGGCAGCAAAAAATAAAGGCAAATGGCTCCTTCAAGCAAGGCTAATAAGAAGGCTGCAGGTGATGTGGCTGCATGGATGTTCAATGTGGTCACTTCAGTTGGAATCATTATTGTTAACAAAGCCTTAATGGCTAACTATGGGTTTTTCTTTGGTAAATTTCTCCGCGATATTCCATCACTTTCTCAGAACAGCATTCCTTTGTATTAAGATTCCAGCTACATTGGTTGTATCTATTAATTTCAATTAAAAGGAATCTGGCTATAATATCACGAAATATACTATTCTGAACTCTATAATCTACAATGTTATAGCTATATGCATTGCTTTTTTAAGAAGGAAAAAAAATAAAAAAAATGAGTCTGATGGGACATTTAGCACCAAGAGAAACGCATGCTTCTTTGAACTGAATCTCACAATTTACAGGAAGTTCAAAAATTACTTAGCGGATATGAATTTAATACTTGTCACATTGAAAAGAGACTCTAAGACAAACTTGAACTTAAGCAGGTTTACAGCACCGGCATTTTCATGTAAAAGCTAAAAAAAAAATTTTGCTTGTTGGACAATGAAGATTTGACATTACTATACACTTTTTTCAGTCTTTCTGTTATATGATTGTTCTAGCTTTTGATTACAACAATCTTTGCAGCAACAACATTAACGGGGATGCATTTTGTTACAACAACTTTGATGACGATTGTTCTAAGGTGGCTCGGGATCATCCAAGCTTCTCACTTACCCCTTCTAGATCTTCTAAAATTTGTACTGTGTGCAAACTTCTCTATTGTTGGGATGAACATCAGTTTGATGTGGAACTCGGTGGGATTCTACCAGGTAATTCTACCGCGCATCACATTCATCCTGCTCTTCTGATTCTGTTGAGAACTTCAAATTCTAATCTCCATTATCATTCTCAGATTGCAAAGTTGAGTATGATCCCTGTCTCCTGCTTACTAGAAGTTTCCTTTGACAAGATCCGCTATTCAAGGGATACAAAGCTGAGCATTGTTGTGGTACTCCTAGGGGTTGCTGTATGTACAGTTA-CGGACGTGAGTGTTAATACCAAAGGCTTCATTGCTGCCTTTGTAGCTGTATGGAGCACTGCTCTACAACAGTATGTAAGTTGTCTTGGCAATTTATTAACTTATGCCATCTTGGAAAGCTTGATTTGATCAGTTGAATAACACACCATTACACCGAGGGAATAGATGCACCATCAATAAGGTGCAATTTGATTACCGGATTAGTAATCCAGGTATTATAGCACAAGGGTCCAGTTGAGTGTTTTAGGTACTCTGTTAGAGTAACAGTTTGGAGATCCTATGATTCAAATCCAGTTATTGTACTAGGCGTGAGCCCATCTATTCTTGTCTTAGTGCGAGCACAGTTTACTTGGAAACTTTATTTGTGGTTGTAGCAGGCAGTTTAGTGGATTGGTTGAGTTGCATGCCACTTAAGTTGGAGACAACAATCGTGAAAAAGTAGTTATGCAAGGATTCTAATAATTCAAGATTAGTTATATTAAATAGTGTACTTGTAAACTTTTTAGTTTTAGAAAACCTAAAGGTTTTGTAAGAATTCCTAACTTTGTTTTTATGCAAGTTTTGAATTTTGTTTATGTTTAAACATAAACCTCCCTACATTAAAGGCATTTTTGTGCTTTGCTGCTCTTATCGAGGTATTGCTTCTGTGCACATTTTATTTAACATTATATACCCTATAGAACATAAGTGGGCTCTTGCTGTCCTGCTAGATATGCTGGTATTGCGTCTGATGAGTTTTATATAGGAAGCCAAAGGTTGTATTAGCAACACAAAGTTGTAATAGTAATATAGAGTTTTATATGGGAAATCACACTCTATCTTAGTCAATTTTTTTGGACAAGTAAAATGAAACGTTTTATAGATAATGCAAAGTTTGTTAGGAAACAACAAGACCTAAGCCTCATCTAGAAATTGAAAACTTGTTTTTTGGAAAATTCTGTACAACTGGTCACTTCTGTGCTTGACTTGGATTTGAAAAAAATAATATTTACTCCTATTTTTTAGTCTTCTAGTTTTCTGAAGCTCCTCTTTGAATGTAATTGCACTTGGTCAAAAACTGATATCTGCACTTGGTTTTGTATATGCAGTATGTTCATTACCTTCAAAGGAAATACTCCCTTAGTTCTTTCAATTTGCTGGGACATACTGCACCAGTTCAGGCT-GGAAGTCTGCTGCTAT</genome_strand>
        <mrna_strand>GTGGGAAGAGCAAATAAAAGATTTGGAAATTTTGATGTAGAAGTGTGAATGCTTCTATTTGCTGCTTGGAGGGTAAAACTTGTTTCTGGCAGCAAAAAATAAAGGCAAATGGCTCCTTCAAGCAAGGCTAATAAGAAGGCTGCAGGTGATGTGGCTGCATGGATGTTCAATGTGGTCACTTCAGTTGGAATCATTATTGTTAACAAAGCCTTAATGGCTAACTATGGGTTTTTCTTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACATTAACGGGGATGCATTTTGTTACAACAACTTTGATGACGATTGTTCTAAGGTGGCTCGGGATCATCCAAGCTTCTCACTTACCCCTTCTAGATCTTCTAAAATTTGTACTGTGTGCAAACTTCTCTATTGTTGGGATGAACATCAGTTTGATGTGGAACTCGGTGGGATTCTACCAG...................................................................................ATTGCAAAGTTGAGTATGATCCCTGTCTCCTGCTTACTAGAAGTTTCCTTTGACAAGATCCGCTATTCAAGGGATACAAAGCTGAGCATTGTTGTGGTACTCCTAGGGGTTGCTGTATGTACAGTTACCGGACGTGAGTGTTAATACCAAAGGCTTCATTGCTGCCTTTGTAGCTGTATGGAGCACTGCTCTACAACAGTAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTTCATTACCTTCAAAGGAAATACTCCCTTAGTTCTTTCAATTTGCTGGGACATACTGCACCAGTTCAGGCTGGGAAGTCTGCTGCTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E246745" ref_strand="+" ref_description="SGN-E246745 [cLEF-45-N23]">
      <seq>tgtgtgtgttttcttcaacttctttcacttcttatttgtcaaaaaaaatctacctcacaaatcaatcaaaacttccttctttcttccccaattcctccatttttttgcttacattcacacaaatacactccaaagtttgttcaatttggttatatatatacatatatacgtatagtagagacccagttcgcacgttaagatctgcatctaaaacgcgtcactttcatttctccttacttctcaactggtgggaagagcaaataaaagatttggaaattttgatgtagaagtgtgaatgcttctatttgctgcttggagggtaaaacttgtttctggcagcaaaaaaataaaggcaaatggctccttcaagcaaggctaataagaaggctgcaggtgatgtggctgcatggatgttcaatgtggtcacttcagttggaatcattattgttaacaaagccttaatggctaactatgggtttttctttgcaacaacattaacggggatgcattttgttacaacaactttgatgacgattgttctaaggtggctcgggatcatccaagcttctcacttaccccttctagatcttctaaaatttgtactgtgtgcaaacttctctattgttgggatgaacatcagtttgatgtggaactcggtgggattctaccagattgcaaagttgagtatgatccctgtctcctgcttactagaagtttcctttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="-" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="51442" stop="48678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51142" g_stop="50896" g_length="247"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="247" r_length="247" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50895" i_stop="50036" i_length="860">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50035" g_stop="49798" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="248" r_stop="486" r_length="239" r_score="0.992"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49797" i_stop="49300" i_length="498">
            <donor d_prob="0.702" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49299" g_stop="49115" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="487" r_stop="671" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49114" i_stop="49032" i_length="83">
            <donor d_prob="0.670" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49031" g_stop="48978" g_length="54"/>
          <reference_exon_boundary r_type="cDNA" r_start="672" r_stop="725" r_length="54" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="-" ref_id="SGN-E246745" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>724</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246745" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51142" e_stop="50896"/>
          <exon e_start="50035" e_stop="49798"/>
          <exon e_start="49299" e_stop="49115"/>
          <exon e_start="49031" e_stop="48978"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGTGTGTTTTCTTCAACTTCTTTCACTTCTTATTTGTCAAAAAAAATCTACCTCACAAATCAATCAAAACTTCCTTCTTTCTTCCCCAATTCCTCCATTTTTTTGCTTACATTCACACAAATACACTCCAAAGTTTGTTCAATTTGGTTATATATATACATATATACGTATAGTAGAGACCCAGTTCGCACGTTAAGATCTGCATCTAAAACGCGTCACTTTCATTTCTCCTTACTTCTCAACTGGTGAGTTCAATTATTCACTTTTTTTTTCTTTGACAATTGGATGTGTTGTTATTGCAAATGTAGATCTGTTGAATGATTTATGAGAATTTTGATTCACTGATTGCAATTTAGGTTTTTGGGAATTTAGATCTGAGAATAGTGTTGCGTAAAAGTTTTGTTAAATTTTGAAGCAAAGTGTGGATCTGCATCTGTGATTGATGCAAATGCTGCGATTCTAGTGATTTATGTGATTTTTAATCTATTTTTCACTGTGTTATTGGATTATACAGGTTGAAATGGATAATGAGGATTCATATAGTTAAATCTAACTAGTTTGGGATTGAGTTTTAGTTTTCTTGATAACTGTGGTGTCCGGCTGGTAACTTTGTCTACCGTATGGGAAGAGATCACCTAGTGTTTTGGTCTTTGCTGGACTCACTTCATTGACCATTAGGCCACGCTCATAGGTGCTTGTTGTATTCATGAGTGATAGAGTTAATTTAGTTCATTTGGTTTGCATCCTTGAGATTTCTTTGATCTTTTTATGCAATTTGTGATTTTTACTAGCTGATACTGCTTTTCGACTAGAAAAATAAAAACTAGTTGAAGAAAAGAAGGGGAAAGAGGAGTTATGATTATGGTAAATTGTGGTGGAGTTCCACTAAAAGTTTGTTTTATACTTGATCGTATGGTGAATTGTTTCTTTCTTTTCTTGTTGTATTCACTTTTCCCTTACTTTTAGATCTTATTAGACCATTGCAATTATGGAAATGTATTATTAACTTCATTGTCTTACTTATGCGGTTGGGTTATAGAAGGGAATTGTTTGTTTGCTTGATCTGTCTGTTGTGGATCGTAATGTTTTCTTCTACGTATCGTAGGTGGGAAGAGCAAATAAAAGATTTGGAAATTTTGATGTAGAAGTGTGAATGCTTCTATTTGCTGCTTGGAGGGTAAAACTTGTTTCTGGCAGC-AAAAAATAAAGGCAAATGGCTCCTTCAAGCAAGGCTAATAAGAAGGCTGCAGGTGATGTGGCTGCATGGATGTTCAATGTGGTCACTTCAGTTGGAATCATTATTGTTAACAAAGCCTTAATGGCTAACTATGGGTTTTTCTTTGGTAAATTTCTCCGCGATATTCCATCACTTTCTCAGAACAGCATTCCTTTGTATTAAGATTCCAGCTACATTGGTTGTATCTATTAATTTCAATTAAAAGGAATCTGGCTATAATATCACGAAATATACTATTCTGAACTCTATAATCTACAATGTTATAGCTATATGCATTGCTTTTTTAAGAAGGAAAAAAAATAAAAAAAATGAGTCTGATGGGACATTTAGCACCAAGAGAAACGCATGCTTCTTTGAACTGAATCTCACAATTTACAGGAAGTTCAAAAATTACTTAGCGGATATGAATTTAATACTTGTCACATTGAAAAGAGACTCTAAGACAAACTTGAACTTAAGCAGGTTTACAGCACCGGCATTTTCATGTAAAAGCTAAAAAAAAAATTTTGCTTGTTGGACAATGAAGATTTGACATTACTATACACTTTTTTCAGTCTTTCTGTTATATGATTGTTCTAGCTTTTGATTACAACAATCTTTGCAGCAACAACATTAACGGGGATGCATTTTGTTACAACAACTTTGATGACGATTGTTCTAAGGTGGCTCGGGATCATCCAAGCTTCTCACTTACCCCTTCTAGATCTTCTAAAATTTGTACTGTGTGCAAACTTCTCTATTGTTGGGATGAACATCAGTTTGATGTGGAACTCGGTGGGATTCTACCAGGTAATTCTACCGCGCATCACATTCATCCTGCTCTTCTGATTCTGTTGAGAACTTCAAATTCTAATCTCCATTATCATTCTCAGATTGCAAAGTTGAGTATGATCCCTGTCTCCTGCTTACTAGAAGTTTCCTTTGAC</genome_strand>
        <mrna_strand>TGTGTGTGTTTTCTTCAACTTCTTTCACTTCTTATTTGTCAAAAAAAATCTACCTCACAAATCAATCAAAACTTCCTTCTTTCTTCCCCAATTCCTCCATTTTTTTGCTTACATTCACACAAATACACTCCAAAGTTTGTTCAATTTGGTTATATATATACATATATACGTATAGTAGAGACCCAGTTCGCACGTTAAGATCTGCATCTAAAACGCGTCACTTTCATTTCTCCTTACTTCTCAACTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGAAGAGCAAATAAAAGATTTGGAAATTTTGATGTAGAAGTGTGAATGCTTCTATTTGCTGCTTGGAGGGTAAAACTTGTTTCTGGCAGCAAAAAAATAAAGGCAAATGGCTCCTTCAAGCAAGGCTAATAAGAAGGCTGCAGGTGATGTGGCTGCATGGATGTTCAATGTGGTCACTTCAGTTGGAATCATTATTGTTAACAAAGCCTTAATGGCTAACTATGGGTTTTTCTTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACATTAACGGGGATGCATTTTGTTACAACAACTTTGATGACGATTGTTCTAAGGTGGCTCGGGATCATCCAAGCTTCTCACTTACCCCTTCTAGATCTTCTAAAATTTGTACTGTGTGCAAACTTCTCTATTGTTGGGATGAACATCAGTTTGATGTGGAACTCGGTGGGATTCTACCAG...................................................................................ATTGCAAAGTTGAGTATGATCCCTGTCTCCTGCTTACTAGAAGTTTCCTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E324674" ref_strand="+" ref_description="SGN-E324674 [cTOC-8-A21]">
      <seq>ttcacacaaatacactccaaagtttgttcaatttggttatatatatacatatatacgtatagtagagacccagttcgcacgttaagatctgcatctaaaacgcgtcactttcatttctccttacttctcaactggtgggaagagcaaataaaagatttggaaattttgatgtagaagtgtgaatgcttctatttgctgcttggagggtaaaacttgtttctggcagcaaaaaataaaggcaaatggctccttcaagcaaggctaataagaaggctgcaggtgatgtggctgcatggatgttcaatgtggtcacttcagttggaatcattattgttaacaaagccttaatggctaactatgggtttttctttgcaacaacattaacggggatgcattttgttacaacaactttgatgacgattgttctaaggtggctcgggatcatccaagcttctcacttaccccttctagatcttctaaaatttgtactgtgtgcaaacttctctattgttgggatgaacatcagtttgatgtggaactcggtgggattctaccagattgcaaagttgagtatgatccctgtctcctgcttacta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="-" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="51329" stop="48693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51029" g_stop="50896" g_length="134"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="134" r_length="134" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50895" i_stop="50036" i_length="860">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50035" g_stop="49798" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="372" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49797" i_stop="49300" i_length="498">
            <donor d_prob="0.702" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49299" g_stop="49115" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="557" r_length="185" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="49114" i_stop="49032" i_length="83">
            <donor d_prob="0.670" d_score="1.00"/>
            <acceptor a_prob="0.710" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="49031" g_stop="48993" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="558" r_stop="596" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="-" ref_id="SGN-E324674" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E324674" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51029" e_stop="50896"/>
          <exon e_start="50035" e_stop="49798"/>
          <exon e_start="49299" e_stop="49115"/>
          <exon e_start="49031" e_stop="48993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCACACAAATACACTCCAAAGTTTGTTCAATTTGGTTATATATATACATATATACGTATAGTAGAGACCCAGTTCGCACGTTAAGATCTGCATCTAAAACGCGTCACTTTCATTTCTCCTTACTTCTCAACTGGTGAGTTCAATTATTCACTTTTTTTTTCTTTGACAATTGGATGTGTTGTTATTGCAAATGTAGATCTGTTGAATGATTTATGAGAATTTTGATTCACTGATTGCAATTTAGGTTTTTGGGAATTTAGATCTGAGAATAGTGTTGCGTAAAAGTTTTGTTAAATTTTGAAGCAAAGTGTGGATCTGCATCTGTGATTGATGCAAATGCTGCGATTCTAGTGATTTATGTGATTTTTAATCTATTTTTCACTGTGTTATTGGATTATACAGGTTGAAATGGATAATGAGGATTCATATAGTTAAATCTAACTAGTTTGGGATTGAGTTTTAGTTTTCTTGATAACTGTGGTGTCCGGCTGGTAACTTTGTCTACCGTATGGGAAGAGATCACCTAGTGTTTTGGTCTTTGCTGGACTCACTTCATTGACCATTAGGCCACGCTCATAGGTGCTTGTTGTATTCATGAGTGATAGAGTTAATTTAGTTCATTTGGTTTGCATCCTTGAGATTTCTTTGATCTTTTTATGCAATTTGTGATTTTTACTAGCTGATACTGCTTTTCGACTAGAAAAATAAAAACTAGTTGAAGAAAAGAAGGGGAAAGAGGAGTTATGATTATGGTAAATTGTGGTGGAGTTCCACTAAAAGTTTGTTTTATACTTGATCGTATGGTGAATTGTTTCTTTCTTTTCTTGTTGTATTCACTTTTCCCTTACTTTTAGATCTTATTAGACCATTGCAATTATGGAAATGTATTATTAACTTCATTGTCTTACTTATGCGGTTGGGTTATAGAAGGGAATTGTTTGTTTGCTTGATCTGTCTGTTGTGGATCGTAATGTTTTCTTCTACGTATCGTAGGTGGGAAGAGCAAATAAAAGATTTGGAAATTTTGATGTAGAAGTGTGAATGCTTCTATTTGCTGCTTGGAGGGTAAAACTTGTTTCTGGCAGCAAAAAATAAAGGCAAATGGCTCCTTCAAGCAAGGCTAATAAGAAGGCTGCAGGTGATGTGGCTGCATGGATGTTCAATGTGGTCACTTCAGTTGGAATCATTATTGTTAACAAAGCCTTAATGGCTAACTATGGGTTTTTCTTTGGTAAATTTCTCCGCGATATTCCATCACTTTCTCAGAACAGCATTCCTTTGTATTAAGATTCCAGCTACATTGGTTGTATCTATTAATTTCAATTAAAAGGAATCTGGCTATAATATCACGAAATATACTATTCTGAACTCTATAATCTACAATGTTATAGCTATATGCATTGCTTTTTTAAGAAGGAAAAAAAATAAAAAAAATGAGTCTGATGGGACATTTAGCACCAAGAGAAACGCATGCTTCTTTGAACTGAATCTCACAATTTACAGGAAGTTCAAAAATTACTTAGCGGATATGAATTTAATACTTGTCACATTGAAAAGAGACTCTAAGACAAACTTGAACTTAAGCAGGTTTACAGCACCGGCATTTTCATGTAAAAGCTAAAAAAAAAATTTTGCTTGTTGGACAATGAAGATTTGACATTACTATACACTTTTTTCAGTCTTTCTGTTATATGATTGTTCTAGCTTTTGATTACAACAATCTTTGCAGCAACAACATTAACGGGGATGCATTTTGTTACAACAACTTTGATGACGATTGTTCTAAGGTGGCTCGGGATCATCCAAGCTTCTCACTTACCCCTTCTAGATCTTCTAAAATTTGTACTGTGTGCAAACTTCTCTATTGTTGGGATGAACATCAGTTTGATGTGGAACTCGGTGGGATTCTACCAGGTAATTCTACCGCGCATCACATTCATCCTGCTCTTCTGATTCTGTTGAGAACTTCAAATTCTAATCTCCATTATCATTCTCAGATTGCAAAGTTGAGTATGATCCCTGTCTCCTGCTTACTA</genome_strand>
        <mrna_strand>TTCACACAAATACACTCCAAAGTTTGTTCAATTTGGTTATATATATACATATATACGTATAGTAGAGACCCAGTTCGCACGTTAAGATCTGCATCTAAAACGCGTCACTTTCATTTCTCCTTACTTCTCAACTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGAAGAGCAAATAAAAGATTTGGAAATTTTGATGTAGAAGTGTGAATGCTTCTATTTGCTGCTTGGAGGGTAAAACTTGTTTCTGGCAGCAAAAAATAAAGGCAAATGGCTCCTTCAAGCAAGGCTAATAAGAAGGCTGCAGGTGATGTGGCTGCATGGATGTTCAATGTGGTCACTTCAGTTGGAATCATTATTGTTAACAAAGCCTTAATGGCTAACTATGGGTTTTTCTTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACATTAACGGGGATGCATTTTGTTACAACAACTTTGATGACGATTGTTCTAAGGTGGCTCGGGATCATCCAAGCTTCTCACTTACCCCTTCTAGATCTTCTAAAATTTGTACTGTGTGCAAACTTCTCTATTGTTGGGATGAACATCAGTTTGATGTGGAACTCGGTGGGATTCTACCAG...................................................................................ATTGCAAAGTTGAGTATGATCCCTGTCTCCTGCTTACTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E330033" ref_strand="+" ref_description="SGN-E330033 [cTOD-5-A15]">
      <seq>tcaacttctttcacttcttatttgtcaaaaaaaatctacctgacaaatcaatcaaaacttccttctttcttccccaattcctccatttttttgcttacattcacacaaatacactccaaagtttgttcaatttggttatatatatacatatatacgtatagtagagacccagttcgcacgttaagatctgcatctaaaacgcgtcactttcatttctccttacttctcaactggtgggaagagcaaataaaagatttggaaattttgatgtagaagtgtgaatgcttctatttgctgcttggagggtaaaacttgtttctggcagcaaaaaataaaggcaaatggctccttcaagcaaggctaataagaaggctgcaggtgatgtggctgcatggatgttcaatgtggtcacttcagttggaatcattattgttaacaaagccttaatggctaactatgggtttttctttgcaacaacattaacggggatgcattttgttacaacaactttgatgacgattgttctaaggtggctcgggatcatccaagcttctcacttaccccttctagatcttctaaaatttgtac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="-" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="51428" stop="48883"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51128" g_stop="50896" g_length="233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50895" i_stop="50036" i_length="860">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50035" g_stop="49798" g_length="238"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="471" r_length="238" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49797" i_stop="49300" i_length="498">
            <donor d_prob="0.702" d_score="1.00"/>
            <acceptor a_prob="0.992" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="49299" g_stop="49183" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="472" r_stop="588" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="-" ref_id="SGN-E330033" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E330033" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51128" e_stop="50896"/>
          <exon e_start="50035" e_stop="49798"/>
          <exon e_start="49299" e_stop="49183"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACTTCTTTCACTTCTTATTTGTCAAAAAAAATCTACCTCACAAATCAATCAAAACTTCCTTCTTTCTTCCCCAATTCCTCCATTTTTTTGCTTACATTCACACAAATACACTCCAAAGTTTGTTCAATTTGGTTATATATATACATATATACGTATAGTAGAGACCCAGTTCGCACGTTAAGATCTGCATCTAAAACGCGTCACTTTCATTTCTCCTTACTTCTCAACTGGTGAGTTCAATTATTCACTTTTTTTTTCTTTGACAATTGGATGTGTTGTTATTGCAAATGTAGATCTGTTGAATGATTTATGAGAATTTTGATTCACTGATTGCAATTTAGGTTTTTGGGAATTTAGATCTGAGAATAGTGTTGCGTAAAAGTTTTGTTAAATTTTGAAGCAAAGTGTGGATCTGCATCTGTGATTGATGCAAATGCTGCGATTCTAGTGATTTATGTGATTTTTAATCTATTTTTCACTGTGTTATTGGATTATACAGGTTGAAATGGATAATGAGGATTCATATAGTTAAATCTAACTAGTTTGGGATTGAGTTTTAGTTTTCTTGATAACTGTGGTGTCCGGCTGGTAACTTTGTCTACCGTATGGGAAGAGATCACCTAGTGTTTTGGTCTTTGCTGGACTCACTTCATTGACCATTAGGCCACGCTCATAGGTGCTTGTTGTATTCATGAGTGATAGAGTTAATTTAGTTCATTTGGTTTGCATCCTTGAGATTTCTTTGATCTTTTTATGCAATTTGTGATTTTTACTAGCTGATACTGCTTTTCGACTAGAAAAATAAAAACTAGTTGAAGAAAAGAAGGGGAAAGAGGAGTTATGATTATGGTAAATTGTGGTGGAGTTCCACTAAAAGTTTGTTTTATACTTGATCGTATGGTGAATTGTTTCTTTCTTTTCTTGTTGTATTCACTTTTCCCTTACTTTTAGATCTTATTAGACCATTGCAATTATGGAAATGTATTATTAACTTCATTGTCTTACTTATGCGGTTGGGTTATAGAAGGGAATTGTTTGTTTGCTTGATCTGTCTGTTGTGGATCGTAATGTTTTCTTCTACGTATCGTAGGTGGGAAGAGCAAATAAAAGATTTGGAAATTTTGATGTAGAAGTGTGAATGCTTCTATTTGCTGCTTGGAGGGTAAAACTTGTTTCTGGCAGCAAAAAATAAAGGCAAATGGCTCCTTCAAGCAAGGCTAATAAGAAGGCTGCAGGTGATGTGGCTGCATGGATGTTCAATGTGGTCACTTCAGTTGGAATCATTATTGTTAACAAAGCCTTAATGGCTAACTATGGGTTTTTCTTTGGTAAATTTCTCCGCGATATTCCATCACTTTCTCAGAACAGCATTCCTTTGTATTAAGATTCCAGCTACATTGGTTGTATCTATTAATTTCAATTAAAAGGAATCTGGCTATAATATCACGAAATATACTATTCTGAACTCTATAATCTACAATGTTATAGCTATATGCATTGCTTTTTTAAGAAGGAAAAAAAATAAAAAAAATGAGTCTGATGGGACATTTAGCACCAAGAGAAACGCATGCTTCTTTGAACTGAATCTCACAATTTACAGGAAGTTCAAAAATTACTTAGCGGATATGAATTTAATACTTGTCACATTGAAAAGAGACTCTAAGACAAACTTGAACTTAAGCAGGTTTACAGCACCGGCATTTTCATGTAAAAGCTAAAAAAAAAATTTTGCTTGTTGGACAATGAAGATTTGACATTACTATACACTTTTTTCAGTCTTTCTGTTATATGATTGTTCTAGCTTTTGATTACAACAATCTTTGCAGCAACAACATTAACGGGGATGCATTTTGTTACAACAACTTTGATGACGATTGTTCTAAGGTGGCTCGGGATCATCCAAGCTTCTCACTTACCCCTTCTAGATCTTCTAAAATTTGTAC</genome_strand>
        <mrna_strand>TCAACTTCTTTCACTTCTTATTTGTCAAAAAAAATCTACCTGACAAATCAATCAAAACTTCCTTCTTTCTTCCCCAATTCCTCCATTTTTTTGCTTACATTCACACAAATACACTCCAAAGTTTGTTCAATTTGGTTATATATATACATATATACGTATAGTAGAGACCCAGTTCGCACGTTAAGATCTGCATCTAAAACGCGTCACTTTCATTTCTCCTTACTTCTCAACTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGAAGAGCAAATAAAAGATTTGGAAATTTTGATGTAGAAGTGTGAATGCTTCTATTTGCTGCTTGGAGGGTAAAACTTGTTTCTGGCAGCAAAAAATAAAGGCAAATGGCTCCTTCAAGCAAGGCTAATAAGAAGGCTGCAGGTGATGTGGCTGCATGGATGTTCAATGTGGTCACTTCAGTTGGAATCATTATTGTTAACAAAGCCTTAATGGCTAACTATGGGTTTTTCTTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACATTAACGGGGATGCATTTTGTTACAACAACTTTGATGACGATTGTTCTAAGGTGGCTCGGGATCATCCAAGCTTCTCACTTACCCCTTCTAGATCTTCTAAAATTTGTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E203928" ref_strand="+" ref_description="SGN-E203928 [cLEC-17-L10]">
      <seq>ttcttcaacttctctcacttcttatgtgtcaaaaaaatctacctcacaaatcaatcaaaacttccttctttcttccccaattcctgcattattatgcttacattcacacaaatacactccaaagctcgttcaacctgggtatatatatacatatatacgcatagtaaagacccatatcgcacgctaagatctgcatctaaaacgcgtcactttcatttatccttacttctcaactggtgggaagagcacataaaagatttggaaattttgaagtagaagtgtgaatgcttctatttgctgcttggagggtaaaacatgtttctggcctcccaaaataaaggccaatggctcctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="-" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="51432" stop="49618"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51132" g_stop="50896" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="236" r_length="236" r_score="0.928"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="50895" i_stop="50036" i_length="860">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.991" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50035" g_stop="49918" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="354" r_length="118" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="-" ref_id="SGN-E203928" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>355</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E203928" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51132" e_stop="50896"/>
          <exon e_start="50035" e_stop="49918"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCAACTTCTTTCACTTCTTATTTGTCAAAAAAAATCTACCTCACAAATCAATCAAAACTTCCTTCTTTCTTCCCCAATTCCTCCATTTTTTTGCTTACATTCACACAAATACACTCCAAAGTTTGTTCAATTTGGTTATATATATACATATATACGTATAGTAGAGACCCAGTTCGCACGTTAAGATCTGCATCTAAAACGCGTCACTTTCATTTCTCCTTACTTCTCAACTGGTGAGTTCAATTATTCACTTTTTTTTTCTTTGACAATTGGATGTGTTGTTATTGCAAATGTAGATCTGTTGAATGATTTATGAGAATTTTGATTCACTGATTGCAATTTAGGTTTTTGGGAATTTAGATCTGAGAATAGTGTTGCGTAAAAGTTTTGTTAAATTTTGAAGCAAAGTGTGGATCTGCATCTGTGATTGATGCAAATGCTGCGATTCTAGTGATTTATGTGATTTTTAATCTATTTTTCACTGTGTTATTGGATTATACAGGTTGAAATGGATAATGAGGATTCATATAGTTAAATCTAACTAGTTTGGGATTGAGTTTTAGTTTTCTTGATAACTGTGGTGTCCGGCTGGTAACTTTGTCTACCGTATGGGAAGAGATCACCTAGTGTTTTGGTCTTTGCTGGACTCACTTCATTGACCATTAGGCCACGCTCATAGGTGCTTGTTGTATTCATGAGTGATAGAGTTAATTTAGTTCATTTGGTTTGCATCCTTGAGATTTCTTTGATCTTTTTATGCAATTTGTGATTTTTACTAGCTGATACTGCTTTTCGACTAGAAAAATAAAAACTAGTTGAAGAAAAGAAGGGGAAAGAGGAGTTATGATTATGGTAAATTGTGGTGGAGTTCCACTAAAAGTTTGTTTTATACTTGATCGTATGGTGAATTGTTTCTTTCTTTTCTTGTTGTATTCACTTTTCCCTTACTTTTAGATCTTATTAGACCATTGCAATTATGGAAATGTATTATTAACTTCATTGTCTTACTTATGCGGTTGGGTTATAGAAGGGAATTGTTTGTTTGCTTGATCTGTCTGTTGTGGATCGTAATGTTTTCTTCTACGTATCGTAGGTGGGAAGAGCAAATAAAAGATTTGGAAATTTTGATGTAGAAGTGTGAATGCTTCTATTTGCTGCTTGGAGGGTAAAACTTGTTTCTGGCAGCAAAAAATAAAGGCAAATGGCTCCTT</genome_strand>
        <mrna_strand>TTCTTCAACTTCTCTCACTTCTTATGTGTC-AAAAAAATCTACCTCACAAATCAATCAAAACTTCCTTCTTTCTTCCCCAATTCCTGCATTATTATGCTTACATTCACACAAATACACTCCAAAGCTCGTTCAACCTGGGTATATATATACATATATACGCATAGTAAAGACCCATATCGCACGCTAAGATCTGCATCTAAAACGCGTCACTTTCATTTATCCTTACTTCTCAACTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGAAGAGCACATAAAAGATTTGGAAATTTTGAAGTAGAAGTGTGAATGCTTCTATTTGCTGCTTGGAGGGTAAAACATGTTTCTGGCCTCCCAAAATAAAGGCCAATGGCTCCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E701056" ref_strand="+" ref_description="SGN-E701056 [FA14DF08]">
      <seq>ttttttagtaaaatttgaaattatgtaatcttccaaacttttcataatccacgccgactactatttttcacacctcaaattgcttacaaatacaatttcataccaacctctaccgtgaaattcgtcgaaatctaccgaaaattcgccggagattcttttgggttatcgaaaccgattgaaaaagataaggttaagggattaggaggaggcgattgaagatggggaagaaaaggaagtctctagcatcgagccttgatgaggtggatcgaaccatgtattcgactttttgtagcgctgctaattccctttctcagctttatactcaggctatgaaccaacagaaactttccttcctctccggtgaacgccatggaatggaaaaactgtatcaatggatcttgaggcaacaagagggtggatccagagtaacaactgttgacataatgaactaccttcagtctgaattggattataatggagaggaccagtcgatgtctcctaggccaccgcctcagcattcccaaccgttgcactttgcaaactcagggtttcatgtctctccaggaccagttggcgtagccgctccaggacatggcttacgatctgatcatgatcagcaaccaaagaacaatgttttctcgaatgctctttcaagccctgttcgtcgaagcctacaaaattatcacattgctcaagggagtcactttgcgaacaatgctcaacctccaaatgctaccagacacaatgaaactaactcccaaaacctaaatagagattctaatggttataactctgtcgatgcatccatggatatgcattctgatagtccaggtcatgactctacctattgaccccataatgttttggaagctggcttttggcatgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="55113" stop="63006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55413" g_stop="55789" g_length="377"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55790" i_stop="58681" i_length="2892">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58682" g_stop="58762" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="458" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58763" i_stop="62277" i_length="3515">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62278" g_stop="62706" g_length="429"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="887" r_length="429" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E701056" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>887</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55413" e_stop="55789"/>
          <exon e_start="58682" e_stop="58762"/>
          <exon e_start="62278" e_stop="62706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTTTAGTAAAATTTGAAATTATGTAATCTTCCAAACTTTTCATAATCCACGCCGACTACTATTTTTCACACCTCAAATTGCTTACAAATACAATTTCATACCAACCTCTACCGTGAAATTCGTCGAAATCTACCGAAAATTCGCCGGAGATTCTTTTGGGTTATCGAAACCGATTGAAAAAGATAAGGTTAAGGGATTAGGAGGAGGCGATTGAAGATGGGGAAGAAAAGGAAGTCTCTAGCATCGAGCCTTGATGAGGTGGATCGAACCATGTATTCGACTTTTTGTAGCGCTGCTAATTCCCTTTCTCAGCTTTATACTCAGGCTATGAACCAACAGAAACTTTCCTTCCTCTCCGGTGAACGCCATGGAATGGTAATTTTTTAATTTTTCGTTTTTGATATGTTGTAAAAAATTGTTCGTTGTTGGTTGTATAGTTTTATGTTTGATTTTCGGTATCTGGGTATAGTTTTTTTTTGTTGTTGTTTAGTTTGGAATTTGAACTGAGGTTTGGGAAGTATAGTTTGTATGGATAAGGTATGAGGGTCGTTGTAGGATGAAATGCAGTAGAAAAGTAGGGATTACTATGTGTATTTCTACAGCCAATACCGACTAGTTTGGTATCCGGTAAACTAATTTCATGGGATTCCTGACACGTTCTACCAACTCTATCCATCAAGGCAAGGATAGACGGGAAGAATTACCTAGTGTTTTTGTTTCCGTTAATTTTTGAATTTGAGACTTCATGACTCTTAATAACTTTATTATTGACCACTAGGCCACGCGCTTGGGTGCAGCTTGGATTGAGGCATAGTTTTTTTTTATTTTTATTTTATATGTTTAACTTTTGAGGATTGGGTCATTTGTCGATTCACTTCCAAGGAATAGTCTTTTTTCCACTTTGTGTAGTTTTGAAATGCTTAACTCTGTCTATGTGAGTTTTGTTAAGTACAGTAGGTCCAAAGTAAAGGAGGAGAGTTGTGTTACTATGAAAAATAAGTAACTATGAGGATTATAGTCAATACCATCTAGTTTGCTCTGAGACATGGGTGTTTTTTCCTCCAAGAATTGAGTCATAGTTGATTGATTATTGTATGGATTTGGAGCTTTGCATTCTTTTTTCTTTTGATTTTTGGTGAACCCTACCCCAAAATCTTCTAGGAGGAACCAAGTAGTGATTTTTCCAATTTGTTCCCTTGGTGACTCATCAACCTCATTCTGCATTTACATTCCTACATGGTGAAGCATGGGGTTTAGCAAGTTATTGATTAATTTAAGAATGATTTTAGGTGCTTATGCCATTAGCAAGTCAATAATTGAGTATTACTGTGCAGTGTGCACACAAGCTAGCTAAAATCATTCAAACTATTAATGTGTGCTCAAACAGCTAGAACACCACCATCATAAAAGAGAGGACGAAAGAAGTAGGATCCAAGTTGCATTCTGCGCTAAAGTTCAAACCGTACGCTTCAAGTCATTAACATAAGAAGTAAGGAATTCTTATACAGTTAGCTGCCAAAATTCAGTTTTGATATTCTTATGAAAGGATGAAATATGTTCTACAGTATGTAGGAATCATATTGGACACAGTGAGTTCGCCTATCCAAAAATAGTAACAGTTTGAACTTAATTTTCTGCTTTCTTTTTCTTTTCAACTATAGTTTTCATAACTTTATATGAACAAATCTGCTTCTTTTTTCTAAAAAAGAATTTATGGATTTGGACAAAAAAAGTAAAGTAAAGCAGGGATTGTGTGTATCGGCATTGTGCTATTATAAATACGCTTTGCTCGAAAGTGTTCTCTGCAAAACTGATTTTTTGGGAAGATGGGCAGTTTTGTTTCATCTGTTTACTGGAAATTTTCAACAATCATTTTCCCCACATTTTTGTTTTCAATTACCATTTTTTTTTCTCAAAAAAATAGTAGGATTCATATTGGGAAGTGGAACGGAGATTTAGTTTTGGGGAGAGGTGTAGAAGAACAATTCTAGAATAAGCGTTCCCACAGAACTTGAAGTAGTGATTAGCAGGATGCTATGGTGAGATGGCCTTATCCAAGGCTACTGGTCATTGGAGGAAATTGAGGAATTTCTTCGCAGGTGTATGAGTGTCCTGCAGGAGGTTTGCTATGATGGGGGATAGAAAGGAGGCAGGGAAGAATTATGGAATGCCAAAGGCACCTGTGGAAGAGCTTTATTTTGATTGGTTTGTGGTGTAAAATGCAATATTAGCAGCATATAATTCAAGGAAAAGAAGATTGCAGTGAATAAGTATAGCTTGTGTATAGAATTGGAGAGAACGCATACCATAATCTGATGCATTGCATAGTCACTCTCAGTGTTATCAAAGGTGAAAAGCGCAAAAGAGCTCTAAGGTTCAGTGAGGCTTTAATAAAGCATGAGCTTTAATGGAAAAAACGTAAAGGGAGAACAAAAATATAAATATATATGTTTTGTCCAAAACTAATAATTATAAACATGAATGACAAATATATGATCAAAGAAATTGAAAAAAAATTATGATAATGTAAAATATCAATTTGTTAGTGTCGCTTCTTCAACAGAGGCTCATTGGCAAGGATAAGTATTCCTTAGAACCTTGATGTGACACTAAATCACACATAAAGCGACACTAAGCGAAGCGCTCAACATGTTTTGAGCCTCGGTTTAAGGCTTAAGCGTGCCTTTGAGAACACTGGTCACTCCATAGCTTTGAAATCTCGCACTCTTTTTTCTTTTGGATTGGTTATAGATCAATAATGTGAACCAGAGAACAAAGACCATCACTAGTTGGAGATTATAGAGGATTCAGCACGGAGAATAAGGCTATCCGAAGAAGAATGCCATCTTCTTTTTTCTTTGACAATTGGAATTTAGAGGGTCAGGAGATTATTGCATAATAGAGAGAGCATTCACCATGTGTAAATGTTTTTTATCTTGATTGGCAAGTGTGGTTGAGCCACTCAATCCCTTTGTAAGTACTTTCGATGCTGAATTGGCATGTAATCATTGAAACAATTGTGAGTGTTAAGAAGAAACAAAAGGTCTATGGATCTTGATTGGACTGTGCACATGTGAATTGTTTCTTGATACTTAATATGTAGTTATTCCATTCCATTTCATTTTTTTTTCCTAGGAAGACATGATGTGATATATAATGTTTAAATTATTCTACTTCTGTTTGTCAGGATTCTATTTTTTGATGAATCTTTGCATATTGTTCTTTTGATGGTGTTTCATGATAACTAATCTCACATTGTTTCAATAGGAAAAACTGTATCAATGGATCTTGAGGCAACAAGAGGGTGGATCCAGAGTAACAACTGTTGACATAATGAACTACCTTCAGGTTTATTTTCTATTATCCTGATAATGTAGCCACCTTTTTTCATGGTTGATATGTTTGATTTTCCTTTCGTGTTGATACTATGGAGCTTCGACTTCTTAGCATAGAGCACAGACGAGTTGCTTATCTCCTTAAAAGATCAATAGACTCTTGAAAGCTTGATCTAGATCTTTTCTACTCCACGAGTTACCTCATGATCCCTTTCCCACCAAAGAAAGGGAAAAGGAATCATGGAGTCTCAATTCTGTATCTCTTTTTCGGCCAATTGGAAAATTGGCACTTTCACAAACTCTCAAATTGCTCTTTTGAGGGTAGATAGTGTAGATTACCGACAAAAAGAACGAAACTTTATTTTGTATGTTAATTAACATTTTCATCTTGAAATCCCAGAAACAATAAGCAGTAGTATGTTCGTTTGGTTTGAGGAGTTGTAATCTCAATTTTTACTATTATGGAGAATGTCCAAATCTGACTTTTTAATTTTTTTGGGGAAGATTTATAGAACGAATATTTGGAATTGGCGAATGGATTCAAATTTATTAAAGAAGTACAGGTATTAAAGAGCATGAGATTTTAGGTACTACCCAGATTCCTATTACCCAAAGATTCTCTGGATCTGGTCATCCAGAATCAGTGCAGCAGCTACAGATACAGTTGAGACTTTTTGAGTTTTCTTGCAAATGCCTAATTACTTCTAGGAGAGAGTGAGAAAGAAATGGCTCCTCTGTAGTTTCCTGTGTGCAATCATTTGAGGTAGAAACCATTAGAGATTCAAAGAATGATGGCAATATGTTGTTGGAACATTTGGCTTTATTTTTCAGTGAGTGAATGTGTCACACTTCATAAGAACCAAGACATTATGGATGATAATGTGACTGTCTTCCATCGGTGGCTCTAGTGTCTCCGCCAACTTTCAAACTCAAGATTACAGTCTAGATTGTATCCGTAAAAGGGACTTCTATTTGGATTTACTCGTATCTGTTTTTTTAGGTTTAAGTTTTTCTGCACTGAAACAACAAATAAATCTTGCTCACTGATCAAACAAAAGGAACCCCACCCACCCACCCACCCACCTGGATCATACTCAATTTGAGAACCACCTATTAATTTTCTAGCCAGGAGTCCTGGACAGACATTTTACTTCTCTGTAATGGTTGAAATAGGTGCTCTTTACGGAACTGTAATTTACTGGGAACCTTCTGCCTTCCCTTTTGAGGTGTAGGACATTTTCAGTGGCAACGAGAATTGATGTTTGCTTTTATTTAGTGGATATTCTTTTTAGTTTCTTGCAGGAAGCTTACAGAAGTCTTTGTGGATAATAAGTAGCAGAGACAGATTGTTAGCTTAATCTCGTTAAATTTGTTATGCTTAAAGTCTGGAGAATCACCCTTCAGGGTGGTCCAGTGGTTTGAGCGTGGAACTTCCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAACGAAAGCAAGGGGTTTGCCTTCTGGGTCGAGCTCATCACACCGGGCTAACGTAGTGAACACCTCTCCTATGTGGTTTGTGAGTATTGCATAGGAGCGGGGTTTTTACCCTATGAGCACCCAAAAGGTAGCGGCTGCGGGTTTCCCTTGTCATAAAAAAAAGACGTCTCGAGAAATCATCACTCTTTGTCCCAGATAACAGATGTTTTAAAACTAAAATTTCAGTGACAACGCTTTTAGATGGTTCTCTATTACCAACCGCTCTAGGTGTTTCTCAAGCAAAACCATGATTGATGAAGTTAGCACTAAACGAGTCTGGAACAATGTGGTTGAGAAATGTGAAATGAAGTTAGCAAGATGGAAATCACAATATCTCTCTAGGGGTGGTAGGTTGACCTTGGTTAATTCTGGTCTTGATTTTTTCAAGTCCATCGAGCAATTTAATGGACTGGAAAGGGGTCAAGACATTTTGTAGTGGAAAGGCAGTTTTAAGGTGGGTTGTGCATACAACTAGCTGAACCACCCCAAAAAGCTCAAAATCACTAGCCATGGAGAGGAATATGAAAGTCAAAAATCCCACTCAAAGTGGCATGTTTTGTCTGTTTTTAGCCAAAGAAGTTGTACTGACTCAAGACAACTTAAAGAGGAGGGGGGGTACCATTATGTTCTACAGTTTTGTTTCTTTTGTGGGAAACTGCTGAGGTAGTTAACCATCTTTTTCTACTCTGTAAGATCACTGACCAACTATGGAGGTTATTCCTGAGTCTTAAGGGTATGTCATGGACCATGCCTCCCAAGATCACATAAGCAATCTAGAGTTGGGAGGAAGCAGGAAAGTAATCCAAAAACGGAGACAAATGTAGAATGGTTCCAGCTAGTATATGGTGGGCAAAATGGAAGTAAAGGAACTCTAGAGCTTTCGATAGTATAGAGAATAGTGCGCAAAAAGACTTTTGGAACCTATAGTCTTAAAATATGCCTAGAATTTGTGTCTAAATAAATAATCTATTAAGGGTAAATTTTAAAGATAAATTTGTTTCCAAGTAAAACTTTTTGGGGCAGACTACTATCAAAGAAATAGTGCCACATACCACATTTAATGGGCAGTTTGAAATCCTTTTGCCTTATTTAGTCTCTTCCATTGGAGCAATTTGTCCCTGTAAATGATATATTACCGCTCTTAGATTTCATTAGCTCCCTCAATATGGCTTAACGACCATTCTTTTGCTTGTGGTTAACCCCTGATTAAATAGGTGTTTTTGTTCTCAGGAGTTACAATATTTTTGTGTATGTAATTTGCATTTCGTTGATTCCTTCCTAATACAACATCTTACTTCATCAAAAAAAGTGCCACATAAGTTGGGCGGAGGGAATATATTGAAATCTCCCCATGATGATGTGTTTTCAGTTTAAAAGGCATTGATTCTCTGGAATTTGATATTGATTCTTATGCGGGACAATAATTTATACCAAAAGAGATGTGAACTGCGATTAAATTGCTCGCCCAGATGGTTAATTTATTATTTTCTTCCACATTAGGCTTTGGGGGTTTGTGTCTTCAAGAATTTTGTTTAAATCTTGTGTGGATCTTATAACTTCTTTTGTGTGTGAATACTGTTATCTCTCAAAGAGTGCTTTAATTGAGATTAACTGATTACTGTGTTATAGATTGCAAGAATCATTTTGATATATTTTATCTGGTTGAGGGAAAATTATTAAGAAAAAAAAAAGGAAACAATGGGCAGAAGTGTGATGATGGAAGTGGCTCTTGACATGCTTAAATCTATCTTGGCTCAGCTTTTGGCCATTCATGGGGATCAAACTTGTGGAGATCTTTTTATATTGTAGTTTGTTGATAAAAGCCTGTGTCCTGCTTTCTTTCAATGTGCACTGATGTTATGGAAGTTGGGTAGTAGTTTCTTTTAGTTGTCTATTTCACCATTCTGGTTGCCATTTTTTTACAAAGATTGATTGTTCTTATAATGGATATGTCCAGTCCTTATTTGGTATTGACAGCCCTGTTTTGATGTATCTAAATATGCATTTCTTTATCTTGTCAGTCTGAATTGGATTATAATGGAGAGGACCAGTCGATGTCTCCTAGGCCACCGCCTCAGCATTCCCAACCGTTGCACTTTGCAAACTCAGGGTTTCATGTCTCTCCAGGACCAGTTGGCGTAGCCGCTCCAGGACATGGCTTACGATCTGATCATGATCAGCAACCAAAGAACAATGTTTTCTCGAATGCTCTTTCAAGCCCTGTTCGTCGAAGCCTACAAAATTATCACATTGCTCAAGGGAGTCACTTTGCGAACAATGCTCAACCTCCAAATGCTACCAGACACAATGAAACTAACTCCCAAAACCTAAATAGAGATTCTAATGGTTATAACTCTGTCGATGCATCCATGGATATGCATTCTGATAGTCCAGGTCATGACTCTACCTATTGACCCCATAATGTTTTGGAAGCTGGCTTTTGGCATGCC</genome_strand>
        <mrna_strand>TTTTTTAGTAAAATTTGAAATTATGTAATCTTCCAAACTTTTCATAATCCACGCCGACTACTATTTTTCACACCTCAAATTGCTTACAAATACAATTTCATACCAACCTCTACCGTGAAATTCGTCGAAATCTACCGAAAATTCGCCGGAGATTCTTTTGGGTTATCGAAACCGATTGAAAAAGATAAGGTTAAGGGATTAGGAGGAGGCGATTGAAGATGGGGAAGAAAAGGAAGTCTCTAGCATCGAGCCTTGATGAGGTGGATCGAACCATGTATTCGACTTTTTGTAGCGCTGCTAATTCCCTTTCTCAGCTTTATACTCAGGCTATGAACCAACAGAAACTTTCCTTCCTCTCCGGTGAACGCCATGGAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAACTGTATCAATGGATCTTGAGGCAACAAGAGGGTGGATCCAGAGTAACAACTGTTGACATAATGAACTACCTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAATTGGATTATAATGGAGAGGACCAGTCGATGTCTCCTAGGCCACCGCCTCAGCATTCCCAACCGTTGCACTTTGCAAACTCAGGGTTTCATGTCTCTCCAGGACCAGTTGGCGTAGCCGCTCCAGGACATGGCTTACGATCTGATCATGATCAGCAACCAAAGAACAATGTTTTCTCGAATGCTCTTTCAAGCCCTGTTCGTCGAAGCCTACAAAATTATCACATTGCTCAAGGGAGTCACTTTGCGAACAATGCTCAACCTCCAAATGCTACCAGACACAATGAAACTAACTCCCAAAACCTAAATAGAGATTCTAATGGTTATAACTCTGTCGATGCATCCATGGATATGCATTCTGATAGTCCAGGTCATGACTCTACCTATTGACCCCATAATGTTTTGGAAGCTGGCTTTTGGCATGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E726221" ref_strand="+" ref_description="SGN-E726221 [LA11AG06]">
      <seq>aattcgtcgaaatctaccgaaaattcgccggagattcttttgggttatcgaaaccgattgaaaaagataaggttaagggattaggaggaggcgattgaagatggggaagaaaaggaagtctctagcatcgagccttgatgaggtggatcgaaccatgtattcgactttttgtagcgctgctaattccctttctcagctttatactcaggctatgaaccaacagaaactttccttcctctccggtgaacgccatggaatggaaaaactgtatcaatggatcttgaggcaacaagagggtggatccagagtaacaactgttgacataatgaactaccttcagtctgaattggattataatggagaggaccagtcgatgtctcctaggccaccgcctcagcattcccaaccgttgcactttgcaaactcagggtttcatgtctctccaggaccagttggcgtagccgctccaggacatggcttacgatctgatcatgatcagcaaccaaagaacaatgttttctcgaatgctctttcaagccctgttcgtcgaagcctacaaaattatcacattgctcaagggagtcactttgcgaacaatgctcaacctccaaatgctaccagacacaatgaaactaactcccaaaacctaaatagagattctaatggttataactctgtcgatgcatccatggatatgcattctgatagtccaggtcatgactctacctattgaccccataatgttttggaagctggcttttggcatgccagagtggtcagactgcaagctcaagtaagttggcgtctattgttgtgcaagtggttaaggtgtaaaagtagatcatgaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="55231" stop="63087"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55531" g_stop="55789" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55790" i_stop="58681" i_length="2892">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58682" g_stop="58762" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="340" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58763" i_stop="62277" i_length="3515">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62278" g_stop="62787" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="850" r_length="510" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E726221" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>850</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E726221" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55531" e_stop="55789"/>
          <exon e_start="58682" e_stop="58762"/>
          <exon e_start="62278" e_stop="62787"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTCGTCGAAATCTACCGAAAATTCGCCGGAGATTCTTTTGGGTTATCGAAACCGATTGAAAAAGATAAGGTTAAGGGATTAGGAGGAGGCGATTGAAGATGGGGAAGAAAAGGAAGTCTCTAGCATCGAGCCTTGATGAGGTGGATCGAACCATGTATTCGACTTTTTGTAGCGCTGCTAATTCCCTTTCTCAGCTTTATACTCAGGCTATGAACCAACAGAAACTTTCCTTCCTCTCCGGTGAACGCCATGGAATGGTAATTTTTTAATTTTTCGTTTTTGATATGTTGTAAAAAATTGTTCGTTGTTGGTTGTATAGTTTTATGTTTGATTTTCGGTATCTGGGTATAGTTTTTTTTTGTTGTTGTTTAGTTTGGAATTTGAACTGAGGTTTGGGAAGTATAGTTTGTATGGATAAGGTATGAGGGTCGTTGTAGGATGAAATGCAGTAGAAAAGTAGGGATTACTATGTGTATTTCTACAGCCAATACCGACTAGTTTGGTATCCGGTAAACTAATTTCATGGGATTCCTGACACGTTCTACCAACTCTATCCATCAAGGCAAGGATAGACGGGAAGAATTACCTAGTGTTTTTGTTTCCGTTAATTTTTGAATTTGAGACTTCATGACTCTTAATAACTTTATTATTGACCACTAGGCCACGCGCTTGGGTGCAGCTTGGATTGAGGCATAGTTTTTTTTTATTTTTATTTTATATGTTTAACTTTTGAGGATTGGGTCATTTGTCGATTCACTTCCAAGGAATAGTCTTTTTTCCACTTTGTGTAGTTTTGAAATGCTTAACTCTGTCTATGTGAGTTTTGTTAAGTACAGTAGGTCCAAAGTAAAGGAGGAGAGTTGTGTTACTATGAAAAATAAGTAACTATGAGGATTATAGTCAATACCATCTAGTTTGCTCTGAGACATGGGTGTTTTTTCCTCCAAGAATTGAGTCATAGTTGATTGATTATTGTATGGATTTGGAGCTTTGCATTCTTTTTTCTTTTGATTTTTGGTGAACCCTACCCCAAAATCTTCTAGGAGGAACCAAGTAGTGATTTTTCCAATTTGTTCCCTTGGTGACTCATCAACCTCATTCTGCATTTACATTCCTACATGGTGAAGCATGGGGTTTAGCAAGTTATTGATTAATTTAAGAATGATTTTAGGTGCTTATGCCATTAGCAAGTCAATAATTGAGTATTACTGTGCAGTGTGCACACAAGCTAGCTAAAATCATTCAAACTATTAATGTGTGCTCAAACAGCTAGAACACCACCATCATAAAAGAGAGGACGAAAGAAGTAGGATCCAAGTTGCATTCTGCGCTAAAGTTCAAACCGTACGCTTCAAGTCATTAACATAAGAAGTAAGGAATTCTTATACAGTTAGCTGCCAAAATTCAGTTTTGATATTCTTATGAAAGGATGAAATATGTTCTACAGTATGTAGGAATCATATTGGACACAGTGAGTTCGCCTATCCAAAAATAGTAACAGTTTGAACTTAATTTTCTGCTTTCTTTTTCTTTTCAACTATAGTTTTCATAACTTTATATGAACAAATCTGCTTCTTTTTTCTAAAAAAGAATTTATGGATTTGGACAAAAAAAGTAAAGTAAAGCAGGGATTGTGTGTATCGGCATTGTGCTATTATAAATACGCTTTGCTCGAAAGTGTTCTCTGCAAAACTGATTTTTTGGGAAGATGGGCAGTTTTGTTTCATCTGTTTACTGGAAATTTTCAACAATCATTTTCCCCACATTTTTGTTTTCAATTACCATTTTTTTTTCTCAAAAAAATAGTAGGATTCATATTGGGAAGTGGAACGGAGATTTAGTTTTGGGGAGAGGTGTAGAAGAACAATTCTAGAATAAGCGTTCCCACAGAACTTGAAGTAGTGATTAGCAGGATGCTATGGTGAGATGGCCTTATCCAAGGCTACTGGTCATTGGAGGAAATTGAGGAATTTCTTCGCAGGTGTATGAGTGTCCTGCAGGAGGTTTGCTATGATGGGGGATAGAAAGGAGGCAGGGAAGAATTATGGAATGCCAAAGGCACCTGTGGAAGAGCTTTATTTTGATTGGTTTGTGGTGTAAAATGCAATATTAGCAGCATATAATTCAAGGAAAAGAAGATTGCAGTGAATAAGTATAGCTTGTGTATAGAATTGGAGAGAACGCATACCATAATCTGATGCATTGCATAGTCACTCTCAGTGTTATCAAAGGTGAAAAGCGCAAAAGAGCTCTAAGGTTCAGTGAGGCTTTAATAAAGCATGAGCTTTAATGGAAAAAACGTAAAGGGAGAACAAAAATATAAATATATATGTTTTGTCCAAAACTAATAATTATAAACATGAATGACAAATATATGATCAAAGAAATTGAAAAAAAATTATGATAATGTAAAATATCAATTTGTTAGTGTCGCTTCTTCAACAGAGGCTCATTGGCAAGGATAAGTATTCCTTAGAACCTTGATGTGACACTAAATCACACATAAAGCGACACTAAGCGAAGCGCTCAACATGTTTTGAGCCTCGGTTTAAGGCTTAAGCGTGCCTTTGAGAACACTGGTCACTCCATAGCTTTGAAATCTCGCACTCTTTTTTCTTTTGGATTGGTTATAGATCAATAATGTGAACCAGAGAACAAAGACCATCACTAGTTGGAGATTATAGAGGATTCAGCACGGAGAATAAGGCTATCCGAAGAAGAATGCCATCTTCTTTTTTCTTTGACAATTGGAATTTAGAGGGTCAGGAGATTATTGCATAATAGAGAGAGCATTCACCATGTGTAAATGTTTTTTATCTTGATTGGCAAGTGTGGTTGAGCCACTCAATCCCTTTGTAAGTACTTTCGATGCTGAATTGGCATGTAATCATTGAAACAATTGTGAGTGTTAAGAAGAAACAAAAGGTCTATGGATCTTGATTGGACTGTGCACATGTGAATTGTTTCTTGATACTTAATATGTAGTTATTCCATTCCATTTCATTTTTTTTTCCTAGGAAGACATGATGTGATATATAATGTTTAAATTATTCTACTTCTGTTTGTCAGGATTCTATTTTTTGATGAATCTTTGCATATTGTTCTTTTGATGGTGTTTCATGATAACTAATCTCACATTGTTTCAATAGGAAAAACTGTATCAATGGATCTTGAGGCAACAAGAGGGTGGATCCAGAGTAACAACTGTTGACATAATGAACTACCTTCAGGTTTATTTTCTATTATCCTGATAATGTAGCCACCTTTTTTCATGGTTGATATGTTTGATTTTCCTTTCGTGTTGATACTATGGAGCTTCGACTTCTTAGCATAGAGCACAGACGAGTTGCTTATCTCCTTAAAAGATCAATAGACTCTTGAAAGCTTGATCTAGATCTTTTCTACTCCACGAGTTACCTCATGATCCCTTTCCCACCAAAGAAAGGGAAAAGGAATCATGGAGTCTCAATTCTGTATCTCTTTTTCGGCCAATTGGAAAATTGGCACTTTCACAAACTCTCAAATTGCTCTTTTGAGGGTAGATAGTGTAGATTACCGACAAAAAGAACGAAACTTTATTTTGTATGTTAATTAACATTTTCATCTTGAAATCCCAGAAACAATAAGCAGTAGTATGTTCGTTTGGTTTGAGGAGTTGTAATCTCAATTTTTACTATTATGGAGAATGTCCAAATCTGACTTTTTAATTTTTTTGGGGAAGATTTATAGAACGAATATTTGGAATTGGCGAATGGATTCAAATTTATTAAAGAAGTACAGGTATTAAAGAGCATGAGATTTTAGGTACTACCCAGATTCCTATTACCCAAAGATTCTCTGGATCTGGTCATCCAGAATCAGTGCAGCAGCTACAGATACAGTTGAGACTTTTTGAGTTTTCTTGCAAATGCCTAATTACTTCTAGGAGAGAGTGAGAAAGAAATGGCTCCTCTGTAGTTTCCTGTGTGCAATCATTTGAGGTAGAAACCATTAGAGATTCAAAGAATGATGGCAATATGTTGTTGGAACATTTGGCTTTATTTTTCAGTGAGTGAATGTGTCACACTTCATAAGAACCAAGACATTATGGATGATAATGTGACTGTCTTCCATCGGTGGCTCTAGTGTCTCCGCCAACTTTCAAACTCAAGATTACAGTCTAGATTGTATCCGTAAAAGGGACTTCTATTTGGATTTACTCGTATCTGTTTTTTTAGGTTTAAGTTTTTCTGCACTGAAACAACAAATAAATCTTGCTCACTGATCAAACAAAAGGAACCCCACCCACCCACCCACCCACCTGGATCATACTCAATTTGAGAACCACCTATTAATTTTCTAGCCAGGAGTCCTGGACAGACATTTTACTTCTCTGTAATGGTTGAAATAGGTGCTCTTTACGGAACTGTAATTTACTGGGAACCTTCTGCCTTCCCTTTTGAGGTGTAGGACATTTTCAGTGGCAACGAGAATTGATGTTTGCTTTTATTTAGTGGATATTCTTTTTAGTTTCTTGCAGGAAGCTTACAGAAGTCTTTGTGGATAATAAGTAGCAGAGACAGATTGTTAGCTTAATCTCGTTAAATTTGTTATGCTTAAAGTCTGGAGAATCACCCTTCAGGGTGGTCCAGTGGTTTGAGCGTGGAACTTCCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAACGAAAGCAAGGGGTTTGCCTTCTGGGTCGAGCTCATCACACCGGGCTAACGTAGTGAACACCTCTCCTATGTGGTTTGTGAGTATTGCATAGGAGCGGGGTTTTTACCCTATGAGCACCCAAAAGGTAGCGGCTGCGGGTTTCCCTTGTCATAAAAAAAAGACGTCTCGAGAAATCATCACTCTTTGTCCCAGATAACAGATGTTTTAAAACTAAAATTTCAGTGACAACGCTTTTAGATGGTTCTCTATTACCAACCGCTCTAGGTGTTTCTCAAGCAAAACCATGATTGATGAAGTTAGCACTAAACGAGTCTGGAACAATGTGGTTGAGAAATGTGAAATGAAGTTAGCAAGATGGAAATCACAATATCTCTCTAGGGGTGGTAGGTTGACCTTGGTTAATTCTGGTCTTGATTTTTTCAAGTCCATCGAGCAATTTAATGGACTGGAAAGGGGTCAAGACATTTTGTAGTGGAAAGGCAGTTTTAAGGTGGGTTGTGCATACAACTAGCTGAACCACCCCAAAAAGCTCAAAATCACTAGCCATGGAGAGGAATATGAAAGTCAAAAATCCCACTCAAAGTGGCATGTTTTGTCTGTTTTTAGCCAAAGAAGTTGTACTGACTCAAGACAACTTAAAGAGGAGGGGGGGTACCATTATGTTCTACAGTTTTGTTTCTTTTGTGGGAAACTGCTGAGGTAGTTAACCATCTTTTTCTACTCTGTAAGATCACTGACCAACTATGGAGGTTATTCCTGAGTCTTAAGGGTATGTCATGGACCATGCCTCCCAAGATCACATAAGCAATCTAGAGTTGGGAGGAAGCAGGAAAGTAATCCAAAAACGGAGACAAATGTAGAATGGTTCCAGCTAGTATATGGTGGGCAAAATGGAAGTAAAGGAACTCTAGAGCTTTCGATAGTATAGAGAATAGTGCGCAAAAAGACTTTTGGAACCTATAGTCTTAAAATATGCCTAGAATTTGTGTCTAAATAAATAATCTATTAAGGGTAAATTTTAAAGATAAATTTGTTTCCAAGTAAAACTTTTTGGGGCAGACTACTATCAAAGAAATAGTGCCACATACCACATTTAATGGGCAGTTTGAAATCCTTTTGCCTTATTTAGTCTCTTCCATTGGAGCAATTTGTCCCTGTAAATGATATATTACCGCTCTTAGATTTCATTAGCTCCCTCAATATGGCTTAACGACCATTCTTTTGCTTGTGGTTAACCCCTGATTAAATAGGTGTTTTTGTTCTCAGGAGTTACAATATTTTTGTGTATGTAATTTGCATTTCGTTGATTCCTTCCTAATACAACATCTTACTTCATCAAAAAAAGTGCCACATAAGTTGGGCGGAGGGAATATATTGAAATCTCCCCATGATGATGTGTTTTCAGTTTAAAAGGCATTGATTCTCTGGAATTTGATATTGATTCTTATGCGGGACAATAATTTATACCAAAAGAGATGTGAACTGCGATTAAATTGCTCGCCCAGATGGTTAATTTATTATTTTCTTCCACATTAGGCTTTGGGGGTTTGTGTCTTCAAGAATTTTGTTTAAATCTTGTGTGGATCTTATAACTTCTTTTGTGTGTGAATACTGTTATCTCTCAAAGAGTGCTTTAATTGAGATTAACTGATTACTGTGTTATAGATTGCAAGAATCATTTTGATATATTTTATCTGGTTGAGGGAAAATTATTAAGAAAAAAAAAAGGAAACAATGGGCAGAAGTGTGATGATGGAAGTGGCTCTTGACATGCTTAAATCTATCTTGGCTCAGCTTTTGGCCATTCATGGGGATCAAACTTGTGGAGATCTTTTTATATTGTAGTTTGTTGATAAAAGCCTGTGTCCTGCTTTCTTTCAATGTGCACTGATGTTATGGAAGTTGGGTAGTAGTTTCTTTTAGTTGTCTATTTCACCATTCTGGTTGCCATTTTTTTACAAAGATTGATTGTTCTTATAATGGATATGTCCAGTCCTTATTTGGTATTGACAGCCCTGTTTTGATGTATCTAAATATGCATTTCTTTATCTTGTCAGTCTGAATTGGATTATAATGGAGAGGACCAGTCGATGTCTCCTAGGCCACCGCCTCAGCATTCCCAACCGTTGCACTTTGCAAACTCAGGGTTTCATGTCTCTCCAGGACCAGTTGGCGTAGCCGCTCCAGGACATGGCTTACGATCTGATCATGATCAGCAACCAAAGAACAATGTTTTCTCGAATGCTCTTTCAAGCCCTGTTCGTCGAAGCCTACAAAATTATCACATTGCTCAAGGGAGTCACTTTGCGAACAATGCTCAACCTCCAAATGCTACCAGACACAATGAAACTAACTCCCAAAACCTAAATAGAGATTCTAATGGTTATAACTCTGTCGATGCATCCATGGATATGCATTCTGATAGTCCAGGTCATGACTCTACCTATTGACCCCATAATGTTTTGGAAGCTGGCTTTTGGCATGCCAGAGTGGTCAGACTGCAAGCTCAGGTAAGTTGGCGTCTATTGTTGTGCAAGTGTTAAAGGTGTAAAAGTAGATCATGAAAT</genome_strand>
        <mrna_strand>AATTCGTCGAAATCTACCGAAAATTCGCCGGAGATTCTTTTGGGTTATCGAAACCGATTGAAAAAGATAAGGTTAAGGGATTAGGAGGAGGCGATTGAAGATGGGGAAGAAAAGGAAGTCTCTAGCATCGAGCCTTGATGAGGTGGATCGAACCATGTATTCGACTTTTTGTAGCGCTGCTAATTCCCTTTCTCAGCTTTATACTCAGGCTATGAACCAACAGAAACTTTCCTTCCTCTCCGGTGAACGCCATGGAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAACTGTATCAATGGATCTTGAGGCAACAAGAGGGTGGATCCAGAGTAACAACTGTTGACATAATGAACTACCTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAATTGGATTATAATGGAGAGGACCAGTCGATGTCTCCTAGGCCACCGCCTCAGCATTCCCAACCGTTGCACTTTGCAAACTCAGGGTTTCATGTCTCTCCAGGACCAGTTGGCGTAGCCGCTCCAGGACATGGCTTACGATCTGATCATGATCAGCAACCAAAGAACAATGTTTTCTCGAATGCTCTTTCAAGCCCTGTTCGTCGAAGCCTACAAAATTATCACATTGCTCAAGGGAGTCACTTTGCGAACAATGCTCAACCTCCAAATGCTACCAGACACAATGAAACTAACTCCCAAAACCTAAATAGAGATTCTAATGGTTATAACTCTGTCGATGCATCCATGGATATGCATTCTGATAGTCCAGGTCATGACTCTACCTATTGACCCCATAATGTTTTGGAAGCTGGCTTTTGGCATGCCAGAGTGGTCAGACTGCAAGCTCAAGTAAGTTGGCGTCTATTGTTGTGCAAGTGGTTAAGGTGTAAAAGTAGATCATGAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E731816" ref_strand="+" ref_description="SGN-E731816 [LA28BA12]">
      <seq>ccgaaaattcgccggagattcttttgggttatcgaaaccgattgaaaaagataaggttaagggattaggaggaggcgattgaagatggggaagaaaaggaagtctctagcatcgagccttgatgaggtggatcgaaccatgtattcgactttttgtagcgctgctaattccctttctcagctttatactcaggctatgaaccaacagaaactttccttcctctccggtgaacgccatggaatggaaaaactgtatcaatggatcttgaggcaacaagagggtggatccagagtaacaactgttgacataatgaactaccttcagtctgaattggattataatggagaggaccagtcgatgtctcctaggccaccgcctcagcattcccaaccgttgcactttgcaaactcagggtttcatgtctctccaggaccagttggcgtagccgctccaggacatggcttacgatctgatcatgatcagcaaccaaagaacaatgttttctcgaatgctctttcaagccctgttcgtcgaagcctacaaaattatcacattgctcaagggagtcactttgcgaacaatgctcaacctccaaatgctaccagacacaatgaaactaactcccaaaacctaaatagagattctaatggttataactctgtcgatgcatccatggatatgcattctgatagtccaggtcatgactctacctattgaccccataatgttttggaagctggcttttggcatgccagagtggtcagactgcaagctcaggtaagttggcgtctattngttgtgcagtgttaaaggtgtaaaagtagatcatgaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="55247" stop="63086"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="55547" g_stop="55789" g_length="243"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="243" r_length="243" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="55790" i_stop="58681" i_length="2892">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="58682" g_stop="58762" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="324" r_length="81" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="58763" i_stop="62277" i_length="3515">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="62278" g_stop="62786" g_length="509"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="833" r_length="509" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E731816" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>833</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E731816" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="55547" e_stop="55789"/>
          <exon e_start="58682" e_stop="58762"/>
          <exon e_start="62278" e_stop="62786"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGAAAATTCGCCGGAGATTCTTTTGGGTTATCGAAACCGATTGAAAAAGATAAGGTTAAGGGATTAGGAGGAGGCGATTGAAGATGGGGAAGAAAAGGAAGTCTCTAGCATCGAGCCTTGATGAGGTGGATCGAACCATGTATTCGACTTTTTGTAGCGCTGCTAATTCCCTTTCTCAGCTTTATACTCAGGCTATGAACCAACAGAAACTTTCCTTCCTCTCCGGTGAACGCCATGGAATGGTAATTTTTTAATTTTTCGTTTTTGATATGTTGTAAAAAATTGTTCGTTGTTGGTTGTATAGTTTTATGTTTGATTTTCGGTATCTGGGTATAGTTTTTTTTTGTTGTTGTTTAGTTTGGAATTTGAACTGAGGTTTGGGAAGTATAGTTTGTATGGATAAGGTATGAGGGTCGTTGTAGGATGAAATGCAGTAGAAAAGTAGGGATTACTATGTGTATTTCTACAGCCAATACCGACTAGTTTGGTATCCGGTAAACTAATTTCATGGGATTCCTGACACGTTCTACCAACTCTATCCATCAAGGCAAGGATAGACGGGAAGAATTACCTAGTGTTTTTGTTTCCGTTAATTTTTGAATTTGAGACTTCATGACTCTTAATAACTTTATTATTGACCACTAGGCCACGCGCTTGGGTGCAGCTTGGATTGAGGCATAGTTTTTTTTTATTTTTATTTTATATGTTTAACTTTTGAGGATTGGGTCATTTGTCGATTCACTTCCAAGGAATAGTCTTTTTTCCACTTTGTGTAGTTTTGAAATGCTTAACTCTGTCTATGTGAGTTTTGTTAAGTACAGTAGGTCCAAAGTAAAGGAGGAGAGTTGTGTTACTATGAAAAATAAGTAACTATGAGGATTATAGTCAATACCATCTAGTTTGCTCTGAGACATGGGTGTTTTTTCCTCCAAGAATTGAGTCATAGTTGATTGATTATTGTATGGATTTGGAGCTTTGCATTCTTTTTTCTTTTGATTTTTGGTGAACCCTACCCCAAAATCTTCTAGGAGGAACCAAGTAGTGATTTTTCCAATTTGTTCCCTTGGTGACTCATCAACCTCATTCTGCATTTACATTCCTACATGGTGAAGCATGGGGTTTAGCAAGTTATTGATTAATTTAAGAATGATTTTAGGTGCTTATGCCATTAGCAAGTCAATAATTGAGTATTACTGTGCAGTGTGCACACAAGCTAGCTAAAATCATTCAAACTATTAATGTGTGCTCAAACAGCTAGAACACCACCATCATAAAAGAGAGGACGAAAGAAGTAGGATCCAAGTTGCATTCTGCGCTAAAGTTCAAACCGTACGCTTCAAGTCATTAACATAAGAAGTAAGGAATTCTTATACAGTTAGCTGCCAAAATTCAGTTTTGATATTCTTATGAAAGGATGAAATATGTTCTACAGTATGTAGGAATCATATTGGACACAGTGAGTTCGCCTATCCAAAAATAGTAACAGTTTGAACTTAATTTTCTGCTTTCTTTTTCTTTTCAACTATAGTTTTCATAACTTTATATGAACAAATCTGCTTCTTTTTTCTAAAAAAGAATTTATGGATTTGGACAAAAAAAGTAAAGTAAAGCAGGGATTGTGTGTATCGGCATTGTGCTATTATAAATACGCTTTGCTCGAAAGTGTTCTCTGCAAAACTGATTTTTTGGGAAGATGGGCAGTTTTGTTTCATCTGTTTACTGGAAATTTTCAACAATCATTTTCCCCACATTTTTGTTTTCAATTACCATTTTTTTTTCTCAAAAAAATAGTAGGATTCATATTGGGAAGTGGAACGGAGATTTAGTTTTGGGGAGAGGTGTAGAAGAACAATTCTAGAATAAGCGTTCCCACAGAACTTGAAGTAGTGATTAGCAGGATGCTATGGTGAGATGGCCTTATCCAAGGCTACTGGTCATTGGAGGAAATTGAGGAATTTCTTCGCAGGTGTATGAGTGTCCTGCAGGAGGTTTGCTATGATGGGGGATAGAAAGGAGGCAGGGAAGAATTATGGAATGCCAAAGGCACCTGTGGAAGAGCTTTATTTTGATTGGTTTGTGGTGTAAAATGCAATATTAGCAGCATATAATTCAAGGAAAAGAAGATTGCAGTGAATAAGTATAGCTTGTGTATAGAATTGGAGAGAACGCATACCATAATCTGATGCATTGCATAGTCACTCTCAGTGTTATCAAAGGTGAAAAGCGCAAAAGAGCTCTAAGGTTCAGTGAGGCTTTAATAAAGCATGAGCTTTAATGGAAAAAACGTAAAGGGAGAACAAAAATATAAATATATATGTTTTGTCCAAAACTAATAATTATAAACATGAATGACAAATATATGATCAAAGAAATTGAAAAAAAATTATGATAATGTAAAATATCAATTTGTTAGTGTCGCTTCTTCAACAGAGGCTCATTGGCAAGGATAAGTATTCCTTAGAACCTTGATGTGACACTAAATCACACATAAAGCGACACTAAGCGAAGCGCTCAACATGTTTTGAGCCTCGGTTTAAGGCTTAAGCGTGCCTTTGAGAACACTGGTCACTCCATAGCTTTGAAATCTCGCACTCTTTTTTCTTTTGGATTGGTTATAGATCAATAATGTGAACCAGAGAACAAAGACCATCACTAGTTGGAGATTATAGAGGATTCAGCACGGAGAATAAGGCTATCCGAAGAAGAATGCCATCTTCTTTTTTCTTTGACAATTGGAATTTAGAGGGTCAGGAGATTATTGCATAATAGAGAGAGCATTCACCATGTGTAAATGTTTTTTATCTTGATTGGCAAGTGTGGTTGAGCCACTCAATCCCTTTGTAAGTACTTTCGATGCTGAATTGGCATGTAATCATTGAAACAATTGTGAGTGTTAAGAAGAAACAAAAGGTCTATGGATCTTGATTGGACTGTGCACATGTGAATTGTTTCTTGATACTTAATATGTAGTTATTCCATTCCATTTCATTTTTTTTTCCTAGGAAGACATGATGTGATATATAATGTTTAAATTATTCTACTTCTGTTTGTCAGGATTCTATTTTTTGATGAATCTTTGCATATTGTTCTTTTGATGGTGTTTCATGATAACTAATCTCACATTGTTTCAATAGGAAAAACTGTATCAATGGATCTTGAGGCAACAAGAGGGTGGATCCAGAGTAACAACTGTTGACATAATGAACTACCTTCAGGTTTATTTTCTATTATCCTGATAATGTAGCCACCTTTTTTCATGGTTGATATGTTTGATTTTCCTTTCGTGTTGATACTATGGAGCTTCGACTTCTTAGCATAGAGCACAGACGAGTTGCTTATCTCCTTAAAAGATCAATAGACTCTTGAAAGCTTGATCTAGATCTTTTCTACTCCACGAGTTACCTCATGATCCCTTTCCCACCAAAGAAAGGGAAAAGGAATCATGGAGTCTCAATTCTGTATCTCTTTTTCGGCCAATTGGAAAATTGGCACTTTCACAAACTCTCAAATTGCTCTTTTGAGGGTAGATAGTGTAGATTACCGACAAAAAGAACGAAACTTTATTTTGTATGTTAATTAACATTTTCATCTTGAAATCCCAGAAACAATAAGCAGTAGTATGTTCGTTTGGTTTGAGGAGTTGTAATCTCAATTTTTACTATTATGGAGAATGTCCAAATCTGACTTTTTAATTTTTTTGGGGAAGATTTATAGAACGAATATTTGGAATTGGCGAATGGATTCAAATTTATTAAAGAAGTACAGGTATTAAAGAGCATGAGATTTTAGGTACTACCCAGATTCCTATTACCCAAAGATTCTCTGGATCTGGTCATCCAGAATCAGTGCAGCAGCTACAGATACAGTTGAGACTTTTTGAGTTTTCTTGCAAATGCCTAATTACTTCTAGGAGAGAGTGAGAAAGAAATGGCTCCTCTGTAGTTTCCTGTGTGCAATCATTTGAGGTAGAAACCATTAGAGATTCAAAGAATGATGGCAATATGTTGTTGGAACATTTGGCTTTATTTTTCAGTGAGTGAATGTGTCACACTTCATAAGAACCAAGACATTATGGATGATAATGTGACTGTCTTCCATCGGTGGCTCTAGTGTCTCCGCCAACTTTCAAACTCAAGATTACAGTCTAGATTGTATCCGTAAAAGGGACTTCTATTTGGATTTACTCGTATCTGTTTTTTTAGGTTTAAGTTTTTCTGCACTGAAACAACAAATAAATCTTGCTCACTGATCAAACAAAAGGAACCCCACCCACCCACCCACCCACCTGGATCATACTCAATTTGAGAACCACCTATTAATTTTCTAGCCAGGAGTCCTGGACAGACATTTTACTTCTCTGTAATGGTTGAAATAGGTGCTCTTTACGGAACTGTAATTTACTGGGAACCTTCTGCCTTCCCTTTTGAGGTGTAGGACATTTTCAGTGGCAACGAGAATTGATGTTTGCTTTTATTTAGTGGATATTCTTTTTAGTTTCTTGCAGGAAGCTTACAGAAGTCTTTGTGGATAATAAGTAGCAGAGACAGATTGTTAGCTTAATCTCGTTAAATTTGTTATGCTTAAAGTCTGGAGAATCACCCTTCAGGGTGGTCCAGTGGTTTGAGCGTGGAACTTCCATGTTGGAGGTCTCAAGTTCGAAACCCCTTGCCAACGAAAGCAAGGGGTTTGCCTTCTGGGTCGAGCTCATCACACCGGGCTAACGTAGTGAACACCTCTCCTATGTGGTTTGTGAGTATTGCATAGGAGCGGGGTTTTTACCCTATGAGCACCCAAAAGGTAGCGGCTGCGGGTTTCCCTTGTCATAAAAAAAAGACGTCTCGAGAAATCATCACTCTTTGTCCCAGATAACAGATGTTTTAAAACTAAAATTTCAGTGACAACGCTTTTAGATGGTTCTCTATTACCAACCGCTCTAGGTGTTTCTCAAGCAAAACCATGATTGATGAAGTTAGCACTAAACGAGTCTGGAACAATGTGGTTGAGAAATGTGAAATGAAGTTAGCAAGATGGAAATCACAATATCTCTCTAGGGGTGGTAGGTTGACCTTGGTTAATTCTGGTCTTGATTTTTTCAAGTCCATCGAGCAATTTAATGGACTGGAAAGGGGTCAAGACATTTTGTAGTGGAAAGGCAGTTTTAAGGTGGGTTGTGCATACAACTAGCTGAACCACCCCAAAAAGCTCAAAATCACTAGCCATGGAGAGGAATATGAAAGTCAAAAATCCCACTCAAAGTGGCATGTTTTGTCTGTTTTTAGCCAAAGAAGTTGTACTGACTCAAGACAACTTAAAGAGGAGGGGGGGTACCATTATGTTCTACAGTTTTGTTTCTTTTGTGGGAAACTGCTGAGGTAGTTAACCATCTTTTTCTACTCTGTAAGATCACTGACCAACTATGGAGGTTATTCCTGAGTCTTAAGGGTATGTCATGGACCATGCCTCCCAAGATCACATAAGCAATCTAGAGTTGGGAGGAAGCAGGAAAGTAATCCAAAAACGGAGACAAATGTAGAATGGTTCCAGCTAGTATATGGTGGGCAAAATGGAAGTAAAGGAACTCTAGAGCTTTCGATAGTATAGAGAATAGTGCGCAAAAAGACTTTTGGAACCTATAGTCTTAAAATATGCCTAGAATTTGTGTCTAAATAAATAATCTATTAAGGGTAAATTTTAAAGATAAATTTGTTTCCAAGTAAAACTTTTTGGGGCAGACTACTATCAAAGAAATAGTGCCACATACCACATTTAATGGGCAGTTTGAAATCCTTTTGCCTTATTTAGTCTCTTCCATTGGAGCAATTTGTCCCTGTAAATGATATATTACCGCTCTTAGATTTCATTAGCTCCCTCAATATGGCTTAACGACCATTCTTTTGCTTGTGGTTAACCCCTGATTAAATAGGTGTTTTTGTTCTCAGGAGTTACAATATTTTTGTGTATGTAATTTGCATTTCGTTGATTCCTTCCTAATACAACATCTTACTTCATCAAAAAAAGTGCCACATAAGTTGGGCGGAGGGAATATATTGAAATCTCCCCATGATGATGTGTTTTCAGTTTAAAAGGCATTGATTCTCTGGAATTTGATATTGATTCTTATGCGGGACAATAATTTATACCAAAAGAGATGTGAACTGCGATTAAATTGCTCGCCCAGATGGTTAATTTATTATTTTCTTCCACATTAGGCTTTGGGGGTTTGTGTCTTCAAGAATTTTGTTTAAATCTTGTGTGGATCTTATAACTTCTTTTGTGTGTGAATACTGTTATCTCTCAAAGAGTGCTTTAATTGAGATTAACTGATTACTGTGTTATAGATTGCAAGAATCATTTTGATATATTTTATCTGGTTGAGGGAAAATTATTAAGAAAAAAAAAAGGAAACAATGGGCAGAAGTGTGATGATGGAAGTGGCTCTTGACATGCTTAAATCTATCTTGGCTCAGCTTTTGGCCATTCATGGGGATCAAACTTGTGGAGATCTTTTTATATTGTAGTTTGTTGATAAAAGCCTGTGTCCTGCTTTCTTTCAATGTGCACTGATGTTATGGAAGTTGGGTAGTAGTTTCTTTTAGTTGTCTATTTCACCATTCTGGTTGCCATTTTTTTACAAAGATTGATTGTTCTTATAATGGATATGTCCAGTCCTTATTTGGTATTGACAGCCCTGTTTTGATGTATCTAAATATGCATTTCTTTATCTTGTCAGTCTGAATTGGATTATAATGGAGAGGACCAGTCGATGTCTCCTAGGCCACCGCCTCAGCATTCCCAACCGTTGCACTTTGCAAACTCAGGGTTTCATGTCTCTCCAGGACCAGTTGGCGTAGCCGCTCCAGGACATGGCTTACGATCTGATCATGATCAGCAACCAAAGAACAATGTTTTCTCGAATGCTCTTTCAAGCCCTGTTCGTCGAAGCCTACAAAATTATCACATTGCTCAAGGGAGTCACTTTGCGAACAATGCTCAACCTCCAAATGCTACCAGACACAATGAAACTAACTCCCAAAACCTAAATAGAGATTCTAATGGTTATAACTCTGTCGATGCATCCATGGATATGCATTCTGATAGTCCAGGTCATGACTCTACCTATTGACCCCATAATGTTTTGGAAGCTGGCTTTTGGCATGCCAGAGTGGTCAGACTGCAAGCTCAGGTAAGTTGGCGTCTATT-GTTGTGCAAGTGTTAAAGGTGTAAAAGTAGATCATGAAA</genome_strand>
        <mrna_strand>CCGAAAATTCGCCGGAGATTCTTTTGGGTTATCGAAACCGATTGAAAAAGATAAGGTTAAGGGATTAGGAGGAGGCGATTGAAGATGGGGAAGAAAAGGAAGTCTCTAGCATCGAGCCTTGATGAGGTGGATCGAACCATGTATTCGACTTTTTGTAGCGCTGCTAATTCCCTTTCTCAGCTTTATACTCAGGCTATGAACCAACAGAAACTTTCCTTCCTCTCCGGTGAACGCCATGGAATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAACTGTATCAATGGATCTTGAGGCAACAAGAGGGTGGATCCAGAGTAACAACTGTTGACATAATGAACTACCTTCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGAATTGGATTATAATGGAGAGGACCAGTCGATGTCTCCTAGGCCACCGCCTCAGCATTCCCAACCGTTGCACTTTGCAAACTCAGGGTTTCATGTCTCTCCAGGACCAGTTGGCGTAGCCGCTCCAGGACATGGCTTACGATCTGATCATGATCAGCAACCAAAGAACAATGTTTTCTCGAATGCTCTTTCAAGCCCTGTTCGTCGAAGCCTACAAAATTATCACATTGCTCAAGGGAGTCACTTTGCGAACAATGCTCAACCTCCAAATGCTACCAGACACAATGAAACTAACTCCCAAAACCTAAATAGAGATTCTAATGGTTATAACTCTGTCGATGCATCCATGGATATGCATTCTGATAGTCCAGGTCATGACTCTACCTATTGACCCCATAATGTTTTGGAAGCTGGCTTTTGGCATGCCAGAGTGGTCAGACTGCAAGCTCAGGTAAGTTGGCGTCTATTNGTTGTGC-AGTGTTAAAGGTGTAAAAGTAGATCATGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E354836" ref_strand="+" ref_description="SGN-E354836 [cTOS-19-H13]">
      <seq>cccaatactcatcccatattaacccgtggcaaagcggtatctttaaacccaaaacctttcaggctaccatacgaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatggtatgaatgacgagtttaaggctttgactgatcagaaaacttgggttcttgtacctaagccccatgggtggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcagatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaattaggagtatgggcttgattactccgagacattcattcctgttattcggcaggaaaccattctcctggtactgtcactcgtcgtgcgtaacattggctcatcaatcagttggatgtttcccatgcttttcttcatggtatgcttgatgaaactatctacatgacgcaaccaccgagctatgntgatccccattttccctcacatgttgcaaactccagaagtctctgtatgggctcaatcnagccccccgtgcttggtacacacgtctgaaaacattttccagggactcngcttcacgtngtgcgtacacgacacgggtctatttactcgacattcagcacacggtacagtcattctttctgnctatgnagatgatatcattattacatgctctactgcagctctcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="74268" stop="75534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74568" g_stop="75221" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="656" r_length="656" r_score="0.907"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E354836" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>654</cumulative_length_of_scored_exons>
        <coverage percentage="0.907" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E354836" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74568" e_stop="75221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCAATACTCATCCCATGTTAACCCGTGACAAAGCCGATATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAATTTGGGTTCTTGTACCTAAG-CCCATGGGCGGCACCCAGTGGGCTTTAAATGGGTGTACGAAATTAAACACAATGCAGATGACAGTATTTCCA-G----AGGCTCGTTTGGTTGCTAAAGGCTACAATTAAGAGTATGGGCTTGATTACTTCGAGACATTCAGTCCTGTTATTCGGCTGGAAACCATTCGCCTAGTACTGTCACTCGCCGTGCGCAAAAAATGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCC-GCTTCCCTCAACATGTTTGCAAACTTCAGAAGTCTCTGTATAGGCTCAAGCAAGCCCCCCGTGCTTGGTACGCACGTCTGAAAATGTTCCTCCAGGGACTCGGCTTCACGTGTTGCGTACAAGACACGAGTTTGTTTACTCGACATTCAGCACAC</genome_strand>
        <mrna_strand>CCCAATACTCATCCCATATTAACCCGTGGCAAAG-CGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACGACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGGTATGAATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGTGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATTAGGAGTATGGGCTTGATTACTCCGAGACATTCATTCCTGTTATTCGGCAGGAAACCATTCTCCTGGTACTGTCACTCGTCGTGCG-TAACATTGGCTCATCAATCAGTTGGATGTTTCCCATGCTTTTCTTCATGGTATGCTTGATGAAACTATCTACATGACGCAACCACCGAGCTATGNTGATCCCCATTTTCCCTC-ACATG-TTGCAAACTCCAGAAGTCTCTGTATGGGCTCAATCNAGCCCCCCGTGCTTGGTACACACGTCTGAAAACATT-TTCCAGGGACTCNGCTTCACGTNGTGCGTACACGACACGGGTCTATTTACTCGACATTCAGCACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E245978" ref_strand="+" ref_description="SGN-E245978 [cLEF-51-O12]">
      <seq>gtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcagtcctgttattcggcaggaaaccattcgcctggtactgtcactcgccgtgcgcaacaattggctcatcaatcagttggatgtttccaatgcttttcttcatggcatgcttgatgaaacaatctacatgacgcaaccaccgggctatgttgatcctcgcttccctcaacatgtttgcaaactccagaagtctctgtatgggctcaagcaagccccccgtgcttggtacgcacgtctgaaaacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="74554" stop="75454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74854" g_stop="75154" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E245978" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74854" e_stop="75154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTTGCTAAAGGCTACAATTAAGAGTATGGGCTTGATTACTTCGAGACATTCAGTCCTGTTATTCGGCTGGAAACCATTCGCCTAGTACTGTCACTCGCCGTGCGCAAAAAATGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCGCTTCCCTCAACATGTTTGCAAACTTCAGAAGTCTCTGTATAGGCTCAAGCAAGCCCCCCGTGCTTGGTACGCACGTCTGAAAATGTT</genome_strand>
        <mrna_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACAATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACGCACGTCTGAAAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E246710" ref_strand="+" ref_description="SGN-E246710 [cLEF-45-O22]">
      <seq>cacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgttgctacatgttgagtatcatagttgattttatgatattacttggtatatatattgatttctattttgagttggccgatgatatctactcagtacccgtgttttgtactgacccctacttttatgttctcttcttgtttatttgtggagtgcagcaaacgtgccatcgtgttcaactcaacagtaattcaagccagtcttactacatcggaaattcagggtgagctaatgcttctagcttggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="-" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="76294" stop="75248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75994" g_stop="75518" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="-" ref_id="SGN-E246710" ref_strand="+">
        <total_alignment_score>0.918</total_alignment_score>
        <cumulative_length_of_scored_exons>477</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E246710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75994" e_stop="75518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACGAACCGACACATAGAATTAGTGGATCGGAGTGTCACGTACCGACACAAGAGGACTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCC-AATAAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGATTATGACATAGTACTTGCTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGG--TATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTAACCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCCTCTTGTTTAATTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTTAACAGTAACTCTAGCCAGTCTTCATTACTCCGGATA-TAAGGGTGAGCTAATGCTTCTAGCTTGGACT</genome_strand>
        <mrna_strand>CACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTACCCGTGTTTTGTACTGACCCCTACTTTTATGTTCTCTTCTTGTTTATTTGTGGAGTGCAGCAAACGTGCCATCGTGTTCAACTCAACAGTAATTCAAGCCAGTCTT-ACTACATCGGAAATTCAGGGTGAGCTAATGCTTCTAGCTTGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E391780" ref_strand="+" ref_description="SGN-E391780 [TUS-24-O2]">
      <seq>tcacaaaccgacatatagatttaggggatcggagtgtcacgtaccgacacaagaggattaatgaatattgagggagcggagtgtcacgtaccgacacaagagaaataaagataatgaatcttgaaagatgttaatatactcaatctaatgaacatgattcccaaatgagtatggtattgaggcttgagtcctcatgtgtgaacttgacggtaattgttaatgatatagtatttgttgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="-" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="76295" stop="75458"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75995" g_stop="75759" g_length="237"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="239" r_length="239" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="-" ref_id="SGN-E391780" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>237</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E391780" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75995" e_stop="75759"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACGAACCGACACATAGAATTAGTGGATCGGAGTGTCACGTACCGACACAAGAGGACTAATGAATA-TGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCC-AATAAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGATTATGACATAGTACTTGCTGTT</genome_strand>
        <mrna_strand>TCACAAACCGACATATAGATTTAGGGGATCGGAGTGTCACGTACCGACACAAGAGGATTAATGAATATTGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATGATTCCCAAATGAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGTTAATGATATAGTATTTGTTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E357559" ref_strand="+" ref_description="SGN-E357559 [cTOS-23-F2]">
      <seq>tagtcttcggtggaggtaggttattgtttctcttacgatattcgtagtaaactcttaatagagaatgatatgtattgataatattgtaaaccctgctatgtgcttaattgtatgcttgcatgaatgtaactatataattgttattatataagcatgatgaagttattgaatcccaaatcttgtaaaaacctaatctctttttaatgatgatgccttggtaagggagaaggcttgatgaactaaagtaatgagattgatgatgccttggtaagggagaaggcttgatgaattgatagaatgagattaggggatcgggtgtcacgaactgacacgtagaattaggggatcgggtgtcacaaaccgacacgtagattaagggatcaggtgtcacgaaccaacaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="-" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="76898" stop="75856"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76599" g_stop="76283" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="315" r_length="315" r_score="0.934"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76282" i_stop="76139" i_length="144">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76138" g_stop="76051" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="402" r_length="87" r_score="0.875"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="-" ref_id="SGN-E357559" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E357559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76599" e_stop="76283"/>
          <exon e_start="76138" e_stop="76051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTTCGGTGGAGGTAGGTTATGATTTCTCTTACGATATCCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGAAAAACCCTAATTCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCTTGATGAACTAAAATAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGGGTGCCACATTCCGGTACCAGGATACAATTAGTGGATCGGGTGTCACGAACCGACACATAGAATTAGTGGGACGGGTGTCACAAACCGACACATAGAATTAGTGGATTGGGTGTCACGAACCGACACATAGAATTAGTGAGACGGGTGTCACGAACCGATACGTAGAATTAGTGGATCGGGTGTCACGAACCGACACATAGAATTAGTGGATTGGGTGTCACGAACCGACACA</genome_strand>
        <mrna_strand>TAGTCTTCGGTGGAGGTAGGTTATTGTTTCTCTTACGATATTCGTAGTAAACTCTTAATAGAGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAACTATATAATTGTTATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGTAAAAACCTAA-TCTCTTT-TTAATGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAACTAAAGTAATGAGATTGATGATGCCTTGGTAAGGGAGAAGGCTTGATGAATTGATAGAATGAGATTAGGGGATCGG................................................................................................................................................GTGTCACGAACTGACACGTAGAATTAGGGGATCGGGTGTCACAAACCGACACGTAG-ATTAAGGGATCAGGTGTCACGAACCAACACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/cxgn-bacpublish-resources-vPjsxq/sgn_ests_tomato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C12HBa0193C03-YZnKw/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C12HBa0193C03.1" temp_strand="+" temp_description="C12HBa0193C03.1  AC212791.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0193C03 upload_account_name:italy">
        <position start="77679" stop="78456"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="77979" g_stop="78155" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C12HBa0193C03.1" gen_strand="+" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C12HBa0193C03.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="77979" e_stop="78155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGATCCATATTGATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>56</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="34827" PGL_stop="37025"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="34827" e_stop="34864"/>
            <exon e_start="34968" e_stop="35110"/>
            <exon e_start="35240" e_stop="35511"/>
            <exon e_start="36088" e_stop="36143"/>
            <exon e_start="36995" e_stop="37025"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.974" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.830" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.854" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34827" e_stop="34864" e_length="38"/>
          </exon>
          <intron i_serial="1" don_prob="0.974" acc_prob="0.997">
            <gDNA_intron_boundary i_start="34865" i_stop="34967" i_length="103"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34968" e_stop="35110" e_length="143"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.830">
            <gDNA_intron_boundary i_start="35111" i_stop="35239" i_length="129"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="35240" e_stop="35511" e_length="272"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.999">
            <gDNA_intron_boundary i_start="35512" i_stop="36087" i_length="576"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="36088" e_stop="36143" e_length="56"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.854">
            <gDNA_intron_boundary i_start="36144" i_stop="36994" i_length="851"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="36995" e_stop="37025" e_length="31"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34827" stop="34864"/>
              <exon start="34968" stop="35110"/>
              <exon start="35240" stop="35511"/>
              <exon start="36088" stop="36143"/>
              <exon start="36995" stop="37025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737635" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34846" stop="34864"/>
              <exon start="34968" stop="35110"/>
              <exon start="35240" stop="35511"/>
              <exon start="36088" stop="36143"/>
              <exon start="36995" stop="37025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E737593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34846" stop="34864"/>
              <exon start="34968" stop="35110"/>
              <exon start="35240" stop="35511"/>
              <exon start="36088" stop="36143"/>
              <exon start="36995" stop="37025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738276" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34846" stop="34864"/>
              <exon start="34968" stop="35110"/>
              <exon start="35240" stop="35511"/>
              <exon start="36088" stop="36143"/>
              <exon start="36995" stop="37025"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E738375" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCCATCGAAGGAGAACAGACTTTTTGATGATGTTTTAG : CAACTTTTGTTCTTCATCACCCAGAGCATGGGCATGCTGTAGTTCATCCAATTATTTCATGCATCATTGATGGAACACTGGAGTATGATAAAAGTAGTCCACCTTTTGCTTCTTTTATATCACTGGTTTGCTCAAGCAGTGAG : AAGGAATATTCTGAACAATGGGCTCTTGCATGTGGAGAGATTTTACGTATCCTAACACACTACAACCGCCCGATTTTCAAAGTTGATCGTCAGGACAAAGGAACAGATAGAAGCACCAGTGGAAGCCACACTTCGACAAGTGAATCTTCCTCTAGTGAACCTGGTGTGCCCTCTATACAACATGAGAGAAAACTGCTGAGACCATTGTCTCCGTGGATCACTGATATATTGCTTGCTGCACCACTAGGGATTAGAAGCGATTACTTCCGCTG : GTGTGGCGGTGTTATGGGAAAGTATGCTGCTGGAGATCTCAAGCCCCCATCAAGTG : CTGCTTCTCATGGGTCTGGGAAGCATCCACA</gDNA_template>
            <first_frame> S  I  E  G  E  Q  T  F  *  *  C  F  S :   N  F  C  S  S  S  P  R  A  W  A  C  C  S  S  S  N  Y  F  M  H  H  *  W  N  T  G  V  *  *  K  *  S  T  F  C  F  F  Y  I  T  G  L  L  K  Q  *   : E  G  I  F  *  T  M  G  S  C  M  W  R  D  F  T  Y  P  N  T  L  Q  P  P  D  F  Q  S  *  S  S  G  Q  R  N  R  *  K  H  Q  W  K  P  H  F  D  K  *  I  F  L  *  *  T  W  C  A  L  Y  T  T  *  E  K  T  A  E  T  I  V  S  V  D  H  *  Y  I  A  C  C  T  T  R  D  *  K  R  L  L  P  L  :  V  W  R  C  Y  G  K  V  C  C  W  R  S  Q  A  P  I  K  C :   C  F  S  W  V  W  E  A  S  T </first_frame>
            <second_frame>  P  S  K  E  N  R  L  F  D  D  V  L   : A  T  F  V  L  H  H  P  E  H  G  H  A  V  V  H  P  I  I  S  C  I  I  D  G  T  L  E  Y  D  K  S  S  P  P  F  A  S  F  I  S  L  V  C  S  S  S  E  :  K  E  Y  S  E  Q  W  A  L  A  C  G  E  I  L  R  I  L  T  H  Y  N  R  P  I  F  K  V  D  R  Q  D  K  G  T  D  R  S  T  S  G  S  H  T  S  T  S  E  S  S  S  S  E  P  G  V  P  S  I  Q  H  E  R  K  L  L  R  P  L  S  P  W  I  T  D  I  L  L  A  A  P  L  G  I  R  S  D  Y  F  R  W :   C  G  G  V  M  G  K  Y  A  A  G  D  L  K  P  P  S  S   : A  A  S  H  G  S  G  K  H  P   </second_frame>
            <third_frame>   H  R  R  R  T  D  F  L  M  M  F  *  :  Q  L  L  F  F  I  T  Q  S  M  G  M  L  *  F  I  Q  L  F  H  A  S  L  M  E  H  W  S  M  I  K  V  V  H  L  L  L  L  L  Y  H  W  F  A  Q  A  V  R :   R  N  I  L  N  N  G  L  L  H  V  E  R  F  Y  V  S  *  H  T  T  T  A  R  F  S  K  L  I  V  R  T  K  E  Q  I  E  A  P  V  E  A  T  L  R  Q  V  N  L  P  L  V  N  L  V  C  P  L  Y  N  M  R  E  N  C  *  D  H  C  L  R  G  S  L  I  Y  C  L  L  H  H  *  G  L  E  A  I  T  S  A   : G  V  A  V  L  W  E  S  M  L  L  E  I  S  S  P  H  Q  V  :  L  L  L  M  G  L  G  S  I  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0193C03.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34828" stop="34864"/>
                    <exon start="34968" stop="35110"/>
                    <exon start="35240" stop="35511"/>
                    <exon start="36088" stop="36143"/>
                    <exon start="36995" stop="37023"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>537</number_coding_nucleotides>
                  <number_encoded_amino_acids>179</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSKENRLFDDVLATFVLHHPEHGHAVVHPIISCIIDGTLEYDKSSPPFASFISLVCSSSEKEYSEQWALACGEILRILTHYNRPIFKVDRQDKGTDRSTSGSHTSTSESSSSEPGVPSIQHERKLLRPLSPWITDILLAAPLGIRSDYFRWCGGVMGKYAAGDLKPPSSAASHGSGKHP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="37325" PGL_stop="39533"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="37325" e_stop="37464"/>
            <exon e_start="39057" e_stop="39254"/>
            <exon e_start="39374" e_stop="39533"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.256" e_score="1.000"/>
          <exon-intron don_prob="0.974" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="37325" e_stop="37464" e_length="140"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.256">
            <gDNA_intron_boundary i_start="37465" i_stop="39056" i_length="1592"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="39057" e_stop="39254" e_length="198"/>
          </exon>
          <intron i_serial="2" don_prob="0.974" acc_prob="0.999">
            <gDNA_intron_boundary i_start="39255" i_stop="39373" i_length="119"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="39374" e_stop="39533" e_length="160"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37325" stop="37464"/>
              <exon start="39057" stop="39254"/>
              <exon start="39374" stop="39533"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329811" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCGCAACTCCAAGTGCCACACAGAGGCTTCTTGTTGGACTTTTAGAAGCTCCACCATCTTGGGCTCCAGATGCACTTGATGCTGCGGTACAACTAGTGGAACTTCTGCGAGCAGCTGAGGATTATGCATCTGGTCTGCGT : CTTCCTAGGAATTGGATGCACTTGCATTTCTTGCGTGCAATTGGAATTGCCATGTCCATGAGAGCAGGAATTGCTGCAGATTCTGCAGCAGCTTTACTTTTCCGAGTACTTTCTCAACCTGCTTTGCTTTTCCCCCCCTTGAGGCAAATTGAAGAAATTGAAATTCTGGGTGGCGACACTTCATGTAATAAAAAGCAG : AGAGAAGTGACTGCTGCAGAAGCCACAGTAGAAGCCACTGCCCAAGGGATTGCATCAATGCTTTGTGCTCATGGTCCGGAGGTTGAATGGAGAATATGTACCATCTGGGAAGCTGCTTATGGATTGATTCCTTTAAGTTCATCTGCAGTTGATCTCCCTG</gDNA_template>
            <first_frame> S  Q  L  Q  V  P  H  R  G  F  L  L  D  F  *  K  L  H  H  L  G  L  Q  M  H  L  M  L  R  Y  N  *  W  N  F  C  E  Q  L  R  I  M  H  L  V  C  V :   F  L  G  I  G  C  T  C  I  S  C  V  Q  L  E  L  P  C  P  *  E  Q  E  L  L  Q  I  L  Q  Q  L  Y  F  S  E  Y  F  L  N  L  L  C  F  S  P  P  *  G  K  L  K  K  L  K  F  W  V  A  T  L  H  V  I  K  S  R :   E  K  *  L  L  Q  K  P  Q  *  K  P  L  P  K  G  L  H  Q  C  F  V  L  M  V  R  R  L  N  G  E  Y  V  P  S  G  K  L  L  M  D  *  F  L  *  V  H  L  Q  L  I  S  L </first_frame>
            <second_frame>  R  N  S  K  C  H  T  E  A  S  C  W  T  F  R  S  S  T  I  L  G  S  R  C  T  *  C  C  G  T  T  S  G  T  S  A  S  S  *  G  L  C  I  W  S  A   : S  S  *  E  L  D  A  L  A  F  L  A  C  N  W  N  C  H  V  H  E  S  R  N  C  C  R  F  C  S  S  F  T  F  P  S  T  F  S  T  C  F  A  F  P  P  L  E  A  N  *  R  N  *  N  S  G  W  R  H  F  M  *  *  K  A   : E  R  S  D  C  C  R  S  H  S  R  S  H  C  P  R  D  C  I  N  A  L  C  S  W  S  G  G  *  M  E  N  M  Y  H  L  G  S  C  L  W  I  D  S  F  K  F  I  C  S  *  S  P   </second_frame>
            <third_frame>   A  T  P  S  A  T  Q  R  L  L  V  G  L  L  E  A  P  P  S  W  A  P  D  A  L  D  A  A  V  Q  L  V  E  L  L  R  A  A  E  D  Y  A  S  G  L  R  :  L  P  R  N  W  M  H  L  H  F  L  R  A  I  G  I  A  M  S  M  R  A  G  I  A  A  D  S  A  A  A  L  L  F  R  V  L  S  Q  P  A  L  L  F  P  P  L  R  Q  I  E  E  I  E  I  L  G  G  D  T  S  C  N  K  K  Q  :  R  E  V  T  A  A  E  A  T  V  E  A  T  A  Q  G  I  A  S  M  L  C  A  H  G  P  E  V  E  W  R  I  C  T  I  W  E  A  A  Y  G  L  I  P  L  S  S  S  A  V  D  L  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0193C03.1" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="37327" stop="37464"/>
                    <exon start="39057" stop="39254"/>
                    <exon start="39374" stop="39532"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ATPSATQRLLVGLLEAPPSWAPDALDAAVQLVELLRAAEDYASGLRLPRNWMHLHFLRAIGIAMSMRAGIAADSAAALLFRVLSQPALLFPPLRQIEEIEILGGDTSCNKKQREVTAAEATVEATAQGIASMLCAHGPEVEWRICTIWEAAYGLIPLSSSAVDLP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="39606" PGL_stop="45442"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40754" e_stop="40918"/>
            <exon e_start="42249" e_stop="43232"/>
            <exon e_start="43433" e_stop="43525"/>
            <exon e_start="44793" e_stop="45442"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.962" e_score="0.999"/>
          <exon-intron don_prob="0.998" acc_prob="0.862" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40754" e_stop="40918" e_length="165"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="40919" i_stop="42248" i_length="1330"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="42249" e_stop="43232" e_length="984"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.962">
            <gDNA_intron_boundary i_start="43233" i_stop="43432" i_length="200"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43433" e_stop="43525" e_length="93"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.862">
            <gDNA_intron_boundary i_start="43526" i_stop="44792" i_length="1267"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="44793" e_stop="45442" e_length="650"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40754" stop="40918"/>
              <exon start="42249" stop="42728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40787" stop="40918"/>
              <exon start="42249" stop="42696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40787" stop="40918"/>
              <exon start="42249" stop="42687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40787" stop="40918"/>
              <exon start="42249" stop="42651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40787" stop="40918"/>
              <exon start="42249" stop="42525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40787" stop="40918"/>
              <exon start="42249" stop="42371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42497" stop="43232"/>
              <exon start="43433" stop="43474"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541753" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42498" stop="43055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42499" stop="43029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42716" stop="43232"/>
              <exon start="43433" stop="43525"/>
              <exon start="44793" stop="44976"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261909" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42716" stop="43007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42982" stop="43232"/>
              <exon start="43433" stop="43525"/>
              <exon start="44793" stop="45339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42984" stop="43232"/>
              <exon start="43433" stop="43525"/>
              <exon start="44793" stop="45442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E740068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43002" stop="43232"/>
              <exon start="43433" stop="43525"/>
              <exon start="44793" stop="45157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347498" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43010" stop="43232"/>
              <exon start="43433" stop="43525"/>
              <exon start="44793" stop="45119"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268859" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43012" stop="43232"/>
              <exon start="43433" stop="43525"/>
              <exon start="44793" stop="45175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E339087" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43018" stop="43232"/>
              <exon start="43433" stop="43490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43023" stop="43232"/>
              <exon start="43433" stop="43525"/>
              <exon start="44793" stop="45102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43182" stop="43232"/>
              <exon start="43433" stop="43525"/>
              <exon start="44793" stop="45442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541751" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43436" stop="43525"/>
              <exon start="44793" stop="45070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43487" stop="43525"/>
              <exon start="44793" stop="45431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373739" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43489" stop="43525"/>
              <exon start="44793" stop="45245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44939" stop="45301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45093" stop="45431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45154" stop="45421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375485" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTTTGGATTTAATTGCAATGCACAAGATCTTTTAAAATCAGTGCTTGCAGACAAACAAGAATTGTGTTTTTCTGTTGTCTCATTGCTCTGGCACAAGTTGATTGCATCACCTGAAACACAACCCATTGCAGAAAGCACTTCCGCCCAGCAAGGATGGAGACAG : GTGGTTGATGCACTATGCAATGTTGTATCAGCGGCACCTGGAAAAGCTGCAACAGCAATTGTTCTTCAGGTCCAGATTTCGCTTTAACTGTATTTGGTCATTATAGATCATGATCATTTTTTGTTAGGCTGCAGCTAGTATGCACAGTTCATATTTATTTGGATCCAAATGGCTTAACAGATACACCTGCTATTTCAAATAATTACATTCTTTTCTAGGGAAAAGAAACAAGTCTATCCTTGTCCTATCCGAAATTGAGAAATTTTGCCCTCCAATGAACTTTTGGTCTAATATTACTGATGCATTAGGATAAAAAGTCTTTTTTTTCCTTAACTCCTAACAAAACGCCAAGGGTAATTTTAAACTAAAGTTGAAAGACAAGGGGTAAGCTTGGACCTTTTTTCACAAATAATTTGGACACATGGAGTCCACCTATTTCATGTTGGAGTTCCGTTAATTAAAAGAAAAAATATAGGATGATTTGCTTATGGCAAGGGTATTAATAACGGACCCAAATTGTATGGAGAAAAAATTGAGCAATTCCGAATAGTTTAGGGGCAATTTCTGGAAGTTTTCCCTTCTCTGTCATATTTTTGGCGTTATCACATGGCAAATACATTTATGTTTATGGTACAGTACCTTTCCGGTTCCAGGGTTTCTTAGACTTGCATGCATTAATAGTTATCATCGCTTTGCTTCTAGCTGTAAGTAGGTCTTCATCACAATATTTGTTTGGTCACTTTCTTGCCAAACTTTACTTGTCAGGCTGAGAGGGAATTGCAACCATGGATTGCTAAAGATGATGAAGTTGGTCAGCAAATGTGGAGAATTAACCAACGTATAGTAAAATTGATCGCAGAACTGATAAGGAATCATGATATAGCGGAATCTTTGGTAATTCTGGCTAGTAACCCTGACCTCCTTTTACGGGCCACAGATGGGATGCTTGTCGATGGAGAAGCATGCACCTTACCACAGCTAGAG : CTTTTGGAAGTGACAGCTAGAGCAATTCAACCAGTACTTGACTGGGGAGAATCTGGACAATCAGTTGCTGATGGCCTCACAAACCTATTGAAG : TGTCGTTTGCCTGCCACAGTTCGCTGTGTTTCTCATCCAAGTGCACATGTCCGTGCTCTCAGTACATCAGTTCTTCGTGACATTATGTATGCTGGTTCAGTAAAACCAAGTGCCAAACAAGCAGCAGATGTTAATGCCATCCATAATCCTGCTTATCAGTACCTTAGCATAAGCATCATTGACTGGAAAGCGGATATTGAGAAGTGTTTGATGTGTGAAGCTAGTAGCCGGCTTGAAAATGGAATGTCTGCTCAATTTCTTGATACTGCTGCTAGGGAATTAGGCTGTACTATATCAGTCTGAAAACTCACTTTTCTGGGGCATATATTAGGTCTCTCTGTACCATACCATACCTATCTTGTAAAAGTCAGTTAGAAAATATATTTTAGAGTCCTGTGATTGTTGTACAATGGCATGTAGATAGTTCCACTTGTTTTGTTTTTCATTTGGCACAGATTGTGTTTGTTGTACTTCCAAATACAAACATGATTTGTGGAAATAAGTAGATGTAGTTGTTTAATATTTTGAGTGACCCACTAAAGGCTGGTTCAGCTTTAGAATTGAATTTTTCCTATCATGTAATAACCTTCTTACTTTGTATTGTACATTCAGCAGATAAAAAGTCATCTATTCAGTTTTGTTTTCCTCTC</gDNA_template>
            <first_frame> H  F  G  F  N  C  N  A  Q  D  L  L  K  S  V  L  A  D  K  Q  E  L  C  F  S  V  V  S  L  L  W  H  K  L  I  A  S  P  E  T  Q  P  I  A  E  S  T  S  A  Q  Q  G  W  R  Q  :  V  V  D  A  L  C  N  V  V  S  A  A  P  G  K  A  A  T  A  I  V  L  Q  V  Q  I  S  L  *  L  Y  L  V  I  I  D  H  D  H  F  L  L  G  C  S  *  Y  A  Q  F  I  F  I  W  I  Q  M  A  *  Q  I  H  L  L  F  Q  I  I  T  F  F  S  R  E  K  K  Q  V  Y  P  C  P  I  R  N  *  E  I  L  P  S  N  E  L  L  V  *  Y  Y  *  C  I  R  I  K  S  L  F  F  P  *  L  L  T  K  R  Q  G  *  F  *  T  K  V  E  R  Q  G  V  S  L  D  L  F  S  Q  I  I  W  T  H  G  V  H  L  F  H  V  G  V  P  L  I  K  R  K  N  I  G  *  F  A  Y  G  K  G  I  N  N  G  P  K  L  Y  G  E  K  I  E  Q  F  R  I  V  *  G  Q  F  L  E  V  F  P  S  L  S  Y  F  W  R  Y  H  M  A  N  T  F  M  F  M  V  Q  Y  L  S  G  S  R  V  S  *  T  C  M  H  *  *  L  S  S  L  C  F  *  L  *  V  G  L  H  H  N  I  C  L  V  T  F  L  P  N  F  T  C  Q  A  E  R  E  L  Q  P  W  I  A  K  D  D  E  V  G  Q  Q  M  W  R  I  N  Q  R  I  V  K  L  I  A  E  L  I  R  N  H  D  I  A  E  S  L  V  I  L  A  S  N  P  D  L  L  L  R  A  T  D  G  M  L  V  D  G  E  A  C  T  L  P  Q  L  E  :  L  L  E  V  T  A  R  A  I  Q  P  V  L  D  W  G  E  S  G  Q  S  V  A  D  G  L  T  N  L  L  K  :  C  R  L  P  A  T  V  R  C  V  S  H  P  S  A  H  V  R  A  L  S  T  S  V  L  R  D  I  M  Y  A  G  S  V  K  P  S  A  K  Q  A  A  D  V  N  A  I  H  N  P  A  Y  Q  Y  L  S  I  S  I  I  D  W  K  A  D  I  E  K  C  L  M  C  E  A  S  S  R  L  E  N  G  M  S  A  Q  F  L  D  T  A  A  R  E  L  G  C  T  I  S  V  *  K  L  T  F  L  G  H  I  L  G  L  S  V  P  Y  H  T  Y  L  V  K  V  S  *  K  I  Y  F  R  V  L  *  L  L  Y  N  G  M  *  I  V  P  L  V  L  F  F  I  W  H  R  L  C  L  L  Y  F  Q  I  Q  T  *  F  V  E  I  S  R  C  S  C  L  I  F  *  V  T  H  *  R  L  V  Q  L  *  N  *  I  F  P  I  M  *  *  P  S  Y  F  V  L  Y  I  Q  Q  I  K  S  H  L  F  S  F  V  F  L   </first_frame>
            <second_frame>  I  L  D  L  I  A  M  H  K  I  F  *  N  Q  C  L  Q  T  N  K  N  C  V  F  L  L  S  H  C  S  G  T  S  *  L  H  H  L  K  H  N  P  L  Q  K  A  L  P  P  S  K  D  G  D  R :   W  L  M  H  Y  A  M  L  Y  Q  R  H  L  E  K  L  Q  Q  Q  L  F  F  R  S  R  F  R  F  N  C  I  W  S  L  *  I  M  I  I  F  C  *  A  A  A  S  M  H  S  S  Y  L  F  G  S  K  W  L  N  R  Y  T  C  Y  F  K  *  L  H  S  F  L  G  K  R  N  K  S  I  L  V  L  S  E  I  E  K  F  C  P  P  M  N  F  W  S  N  I  T  D  A  L  G  *  K  V  F  F  F  L  N  S  *  Q  N  A  K  G  N  F  K  L  K  L  K  D  K  G  *  A  W  T  F  F  H  K  *  F  G  H  M  E  S  T  Y  F  M  L  E  F  R  *  L  K  E  K  I  *  D  D  L  L  M  A  R  V  L  I  T  D  P  N  C  M  E  K  K  L  S  N  S  E  *  F  R  G  N  F  W  K  F  S  L  L  C  H  I  F  G  V  I  T  W  Q  I  H  L  C  L  W  Y  S  T  F  P  V  P  G  F  L  R  L  A  C  I  N  S  Y  H  R  F  A  S  S  C  K  *  V  F  I  T  I  F  V  W  S  L  S  C  Q  T  L  L  V  R  L  R  G  N  C  N  H  G  L  L  K  M  M  K  L  V  S  K  C  G  E  L  T  N  V  *  *  N  *  S  Q  N  *  *  G  I  M  I  *  R  N  L  W  *  F  W  L  V  T  L  T  S  F  Y  G  P  Q  M  G  C  L  S  M  E  K  H  A  P  Y  H  S  *  S :   F  W  K  *  Q  L  E  Q  F  N  Q  Y  L  T  G  E  N  L  D  N  Q  L  L  M  A  S  Q  T  Y  *  S :   V  V  C  L  P  Q  F  A  V  F  L  I  Q  V  H  M  S  V  L  S  V  H  Q  F  F  V  T  L  C  M  L  V  Q  *  N  Q  V  P  N  K  Q  Q  M  L  M  P  S  I  I  L  L  I  S  T  L  A  *  A  S  L  T  G  K  R  I  L  R  S  V  *  C  V  K  L  V  A  G  L  K  M  E  C  L  L  N  F  L  I  L  L  L  G  N  *  A  V  L  Y  Q  S  E  N  S  L  F  W  G  I  Y  *  V  S  L  Y  H  T  I  P  I  L  *  K  S  V  R  K  Y  I  L  E  S  C  D  C  C  T  M  A  C  R  *  F  H  L  F  C  F  S  F  G  T  D  C  V  C  C  T  S  K  Y  K  H  D  L  W  K  *  V  D  V  V  V  *  Y  F  E  *  P  T  K  G  W  F  S  F  R  I  E  F  F  L  S  C  N  N  L  L  T  L  Y  C  T  F  S  R  *  K  V  I  Y  S  V  L  F  S  S  </second_frame>
            <third_frame>   F  W  I  *  L  Q  C  T  R  S  F  K  I  S  A  C  R  Q  T  R  I  V  F  F  C  C  L  I  A  L  A  Q  V  D  C  I  T  *  N  T  T  H  C  R  K  H  F  R  P  A  R  M  E  T   : G  G  *  C  T  M  Q  C  C  I  S  G  T  W  K  S  C  N  S  N  C  S  S  G  P  D  F  A  L  T  V  F  G  H  Y  R  S  *  S  F  F  V  R  L  Q  L  V  C  T  V  H  I  Y  L  D  P  N  G  L  T  D  T  P  A  I  S  N  N  Y  I  L  F  *  G  K  E  T  S  L  S  L  S  Y  P  K  L  R  N  F  A  L  Q  *  T  F  G  L  I  L  L  M  H  *  D  K  K  S  F  F  S  L  T  P  N  K  T  P  R  V  I  L  N  *  S  *  K  T  R  G  K  L  G  P  F  F  T  N  N  L  D  T  W  S  P  P  I  S  C  W  S  S  V  N  *  K  K  K  Y  R  M  I  C  L  W  Q  G  Y  *  *  R  T  Q  I  V  W  R  K  N  *  A  I  P  N  S  L  G  A  I  S  G  S  F  P  F  S  V  I  F  L  A  L  S  H  G  K  Y  I  Y  V  Y  G  T  V  P  F  R  F  Q  G  F  L  D  L  H  A  L  I  V  I  I  A  L  L  L  A  V  S  R  S  S  S  Q  Y  L  F  G  H  F  L  A  K  L  Y  L  S  G  *  E  G  I  A  T  M  D  C  *  R  *  *  S  W  S  A  N  V  E  N  *  P  T  Y  S  K  I  D  R  R  T  D  K  E  S  *  Y  S  G  I  F  G  N  S  G  *  *  P  *  P  P  F  T  G  H  R  W  D  A  C  R  W  R  S  M  H  L  T  T  A  R   : A  F  G  S  D  S  *  S  N  S  T  S  T  *  L  G  R  I  W  T  I  S  C  *  W  P  H  K  P  I  E   : V  S  F  A  C  H  S  S  L  C  F  S  S  K  C  T  C  P  C  S  Q  Y  I  S  S  S  *  H  Y  V  C  W  F  S  K  T  K  C  Q  T  S  S  R  C  *  C  H  P  *  S  C  L  S  V  P  *  H  K  H  H  *  L  E  S  G  Y  *  E  V  F  D  V  *  S  *  *  P  A  *  K  W  N  V  C  S  I  S  *  Y  C  C  *  G  I  R  L  Y  Y  I  S  L  K  T  H  F  S  G  A  Y  I  R  S  L  C  T  I  P  Y  L  S  C  K  S  Q  L  E  N  I  F  *  S  P  V  I  V  V  Q  W  H  V  D  S  S  T  C  F  V  F  H  L  A  Q  I  V  F  V  V  L  P  N  T  N  M  I  C  G  N  K  *  M  *  L  F  N  I  L  S  D  P  L  K  A  G  S  A  L  E  L  N  F  S  Y  H  V  I  T  F  L  L  C  I  V  H  S  A  D  K  K  S  S  I  Q  F  C  F  P  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0193C03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42957" stop="43232"/>
                    <exon start="43433" stop="43525"/>
                    <exon start="44793" stop="45095"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>669</number_coding_nucleotides>
                  <number_encoded_amino_acids>223</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGLHHNICLVTFLPNFTCQAERELQPWIAKDDEVGQQMWRINQRIVKLIAELIRNHDIAESLVILASNPDLLLRATDGMLVDGEACTLPQLELLEVTARAIQPVLDWGESGQSVADGLTNLLKCRLPATVRCVSHPSAHVRALSTSVLRDIMYAGSVKPSAKQAADVNAIHNPAYQYLSISIIDWKADIEKCLMCEASSRLENGMSAQFLDTAARELGCTISV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0193C03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40754" stop="40918"/>
                    <exon start="42249" stop="42335"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFGFNCNAQDLLKSVLADKQELCFSVVSLLWHKLIASPETQPIAESTSAQQGWRQVVDALCNVVSAAPGKAATAIVLQVQISL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="39606" e_stop="40918"/>
            <exon e_start="42249" e_stop="42317"/>
            <exon e_start="43014" e_stop="43232"/>
            <exon e_start="43433" e_stop="43525"/>
            <exon e_start="44793" e_stop="45442"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="0.999"/>
          <exon-intron don_prob="0.997" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.962" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.862" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="39606" e_stop="40918" e_length="1313"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="40919" i_stop="42248" i_length="1330"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="42249" e_stop="42317" e_length="69"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.994">
            <gDNA_intron_boundary i_start="42318" i_stop="43013" i_length="696"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43014" e_stop="43232" e_length="219"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.962">
            <gDNA_intron_boundary i_start="43233" i_stop="43432" i_length="200"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="43433" e_stop="43525" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.998" acc_prob="0.862">
            <gDNA_intron_boundary i_start="43526" i_stop="44792" i_length="1267"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="44793" e_stop="45442" e_length="650"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39606" stop="40179"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249766" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39891" stop="40593"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E315524" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39986" stop="40500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204672" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40024" stop="40677"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214133" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40027" stop="40719"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40590" stop="40918"/>
              <exon start="42249" stop="42317"/>
              <exon start="43014" stop="43232"/>
              <exon start="43433" stop="43456"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E289154" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40590" stop="40918"/>
              <exon start="42249" stop="42317"/>
              <exon start="43014" stop="43124"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373740" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40754" stop="40918"/>
              <exon start="42249" stop="42317"/>
              <exon start="43014" stop="43232"/>
              <exon start="43433" stop="43496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E200736" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43018" stop="43232"/>
              <exon start="43433" stop="43490"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E338718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43023" stop="43232"/>
              <exon start="43433" stop="43525"/>
              <exon start="44793" stop="45102"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302331" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43182" stop="43232"/>
              <exon start="43433" stop="43525"/>
              <exon start="44793" stop="45442"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541751" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43436" stop="43525"/>
              <exon start="44793" stop="45070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43487" stop="43525"/>
              <exon start="44793" stop="45431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373739" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43489" stop="43525"/>
              <exon start="44793" stop="45245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44939" stop="45301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45093" stop="45431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45154" stop="45421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375485" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTGAGTATCTTCCTCGTGGGAGCCCATCTGAAACTTGTCTTATGAAAATATTTGTTGCGACCGTCGAAGCAATTCTTCAGAGAACGTTCCCGCCTGATTCCTCTAGAGAAGAAACCAGAAAAACCAGATATATTTTTGGCTCTGCCTTAAAAAATCTTGCTGTGGCAGAACTGCGAACCATGGTTCATTCATTGTTCTTGGAGTCGTGTGCCTCTGTTGAGCTTGCATCTCGACTACTTTTTGTTATCTTAACAGTATGTGTCAGTCATGAAGCAAAACCAAATGGGAATAAAAGGCCTAAAGGTGAAGATACTCACTCACCTAGTGAAATCGGGGTAGACACTCAGGCAACCATTGGAAAACAAAGACCAATAGGGAGTAAGAAAGTGAAAAAACAAGGGCCTGTTGCAGCATTTGATTCTTATGTCCTTGCTTCTGTCTGTGGACTTTCTTGCGAGCTTCAGCTCTTCAGTATGATTTCAAGAGGGCCTAATTATCCAGATCCAAAAATCATCATGGATGAAGCCAAGCCTGCAAGTGATTCATCTACTGAGCTACGAAATGGGATTCATTCTGCCGTCTCTCATACTCGGAGGATGTTGGAAATTTTAGAGGCACTTTTTTCTCTTAAACCATCTTCTGTTGGAACCTCATGGAGCTTCAGCTCAAATGAGATAGTTGCTGCAGCTATGGTAGCTGCTCATATTTCTGATCTTTTTAAACGCTCCAAGGCCTGCATGCACTCTCTTTCTTCTTTGATACGGTGCAAGTGGGATAATGAAATTCATTCCAGGGCATCGTCAATTTATAACCTAATTGATATTCATAGCAAAACTGTTGCATCAATTGTCAACAAGGCTGAACCATTGGAAGCTTATCTAATACATGTACCACTTCTGAAGGAGCGACCTAGATGCTTGAATGGGAAAAAGCATTATAAATACACAAGTCGTAATTGCTTAACATCAGAACAACCATCAGGACCTCTGTGTAAAGATTCGTATGATCGTAGAAGTTCACTTGTGTGTGAGAAAGCTTCAGACTCAAGTTCACACTCTAGTGAGCTTGCTGGGTACACCATCAGCAAAGTGTTTGCAAATTTCTCCTTGGATGCTACAGACTTGGCCAATTTTCTTACAAAGGACAGGCATTTTGGATTTAATTGCAATGCACAAGATCTTTTAAAATCAGTGCTTGCAGACAAACAAGAATTGTGTTTTTCTGTTGTCTCATTGCTCTGGCACAAGTTGATTGCATCACCTGAAACACAACCCATTGCAGAAAGCACTTCCGCCCAGCAAGGATGGAGACAG : GTGGTTGATGCACTATGCAATGTTGTATCAGCGGCACCTGGAAAAGCTGCAACAGCAATTGTTCTTCAG : GCTGAGAGGGAATTGCAACCATGGATTGCTAAAGATGATGAAGTTGGTCAGCAAATGTGGAGAATTAACCAACGTATAGTAAAATTGATCGCAGAACTGATAAGGAATCATGATATAGCGGAATCTTTGGTAATTCTGGCTAGTAACCCTGACCTCCTTTTACGGGCCACAGATGGGATGCTTGTCGATGGAGAAGCATGCACCTTACCACAGCTAGAG : CTTTTGGAAGTGACAGCTAGAGCAATTCAACCAGTACTTGACTGGGGAGAATCTGGACAATCAGTTGCTGATGGCCTCACAAACCTATTGAAG : TGTCGTTTGCCTGCCACAGTTCGCTGTGTTTCTCATCCAAGTGCACATGTCCGTGCTCTCAGTACATCAGTTCTTCGTGACATTATGTATGCTGGTTCAGTAAAACCAAGTGCCAAACAAGCAGCAGATGTTAATGCCATCCATAATCCTGCTTATCAGTACCTTAGCATAAGCATCATTGACTGGAAAGCGGATATTGAGAAGTGTTTGATGTGTGAAGCTAGTAGCCGGCTTGAAAATGGAATGTCTGCTCAATTTCTTGATACTGCTGCTAGGGAATTAGGCTGTACTATATCAGTCTGAAAACTCACTTTTCTGGGGCATATATTAGGTCTCTCTGTACCATACCATACCTATCTTGTAAAAGTCAGTTAGAAAATATATTTTAGAGTCCTGTGATTGTTGTACAATGGCATGTAGATAGTTCCACTTGTTTTGTTTTTCATTTGGCACAGATTGTGTTTGTTGTACTTCCAAATACAAACATGATTTGTGGAAATAAGTAGATGTAGTTGTTTAATATTTTGAGTGACCCACTAAAGGCTGGTTCAGCTTTAGAATTGAATTTTTCCTATCATGTAATAACCTTCTTACTTTGTATTGTACATTCAGCAGATAAAAAGTCATCTATTCAGTTTTGTTTTCCTCTC</gDNA_template>
            <first_frame> L  S  I  F  L  V  G  A  H  L  K  L  V  L  *  K  Y  L  L  R  P  S  K  Q  F  F  R  E  R  S  R  L  I  P  L  E  K  K  P  E  K  P  D  I  F  L  A  L  P  *  K  I  L  L  W  Q  N  C  E  P  W  F  I  H  C  S  W  S  R  V  P  L  L  S  L  H  L  D  Y  F  L  L  S  *  Q  Y  V  S  V  M  K  Q  N  Q  M  G  I  K  G  L  K  V  K  I  L  T  H  L  V  K  S  G  *  T  L  R  Q  P  L  E  N  K  D  Q  *  G  V  R  K  *  K  N  K  G  L  L  Q  H  L  I  L  M  S  L  L  L  S  V  D  F  L  A  S  F  S  S  S  V  *  F  Q  E  G  L  I  I  Q  I  Q  K  S  S  W  M  K  P  S  L  Q  V  I  H  L  L  S  Y  E  M  G  F  I  L  P  S  L  I  L  G  G  C  W  K  F  *  R  H  F  F  L  L  N  H  L  L  L  E  P  H  G  A  S  A  Q  M  R  *  L  L  Q  L  W  *  L  L  I  F  L  I  F  L  N  A  P  R  P  A  C  T  L  F  L  L  *  Y  G  A  S  G  I  M  K  F  I  P  G  H  R  Q  F  I  T  *  L  I  F  I  A  K  L  L  H  Q  L  S  T  R  L  N  H  W  K  L  I  *  Y  M  Y  H  F  *  R  S  D  L  D  A  *  M  G  K  S  I  I  N  T  Q  V  V  I  A  *  H  Q  N  N  H  Q  D  L  C  V  K  I  R  M  I  V  E  V  H  L  C  V  R  K  L  Q  T  Q  V  H  T  L  V  S  L  L  G  T  P  S  A  K  C  L  Q  I  S  P  W  M  L  Q  T  W  P  I  F  L  Q  R  T  G  I  L  D  L  I  A  M  H  K  I  F  *  N  Q  C  L  Q  T  N  K  N  C  V  F  L  L  S  H  C  S  G  T  S  *  L  H  H  L  K  H  N  P  L  Q  K  A  L  P  P  S  K  D  G  D  R :   W  L  M  H  Y  A  M  L  Y  Q  R  H  L  E  K  L  Q  Q  Q  L  F  F  R :   L  R  G  N  C  N  H  G  L  L  K  M  M  K  L  V  S  K  C  G  E  L  T  N  V  *  *  N  *  S  Q  N  *  *  G  I  M  I  *  R  N  L  W  *  F  W  L  V  T  L  T  S  F  Y  G  P  Q  M  G  C  L  S  M  E  K  H  A  P  Y  H  S  *  S :   F  W  K  *  Q  L  E  Q  F  N  Q  Y  L  T  G  E  N  L  D  N  Q  L  L  M  A  S  Q  T  Y  *  S :   V  V  C  L  P  Q  F  A  V  F  L  I  Q  V  H  M  S  V  L  S  V  H  Q  F  F  V  T  L  C  M  L  V  Q  *  N  Q  V  P  N  K  Q  Q  M  L  M  P  S  I  I  L  L  I  S  T  L  A  *  A  S  L  T  G  K  R  I  L  R  S  V  *  C  V  K  L  V  A  G  L  K  M  E  C  L  L  N  F  L  I  L  L  L  G  N  *  A  V  L  Y  Q  S  E  N  S  L  F  W  G  I  Y  *  V  S  L  Y  H  T  I  P  I  L  *  K  S  V  R  K  Y  I  L  E  S  C  D  C  C  T  M  A  C  R  *  F  H  L  F  C  F  S  F  G  T  D  C  V  C  C  T  S  K  Y  K  H  D  L  W  K  *  V  D  V  V  V  *  Y  F  E  *  P  T  K  G  W  F  S  F  R  I  E  F  F  L  S  C  N  N  L  L  T  L  Y  C  T  F  S  R  *  K  V  I  Y  S  V  L  F  S  S  </first_frame>
            <second_frame>  *  V  S  S  S  W  E  P  I  *  N  L  S  Y  E  N  I  C  C  D  R  R  S  N  S  S  E  N  V  P  A  *  F  L  *  R  R  N  Q  K  N  Q  I  Y  F  W  L  C  L  K  K  S  C  C  G  R  T  A  N  H  G  S  F  I  V  L  G  V  V  C  L  C  *  A  C  I  S  T  T  F  C  Y  L  N  S  M  C  Q  S  *  S  K  T  K  W  E  *  K  A  *  R  *  R  Y  S  L  T  *  *  N  R  G  R  H  S  G  N  H  W  K  T  K  T  N  R  E  *  E  S  E  K  T  R  A  C  C  S  I  *  F  L  C  P  C  F  C  L  W  T  F  L  R  A  S  A  L  Q  Y  D  F  K  R  A  *  L  S  R  S  K  N  H  H  G  *  S  Q  A  C  K  *  F  I  Y  *  A  T  K  W  D  S  F  C  R  L  S  Y  S  E  D  V  G  N  F  R  G  T  F  F  S  *  T  I  F  C  W  N  L  M  E  L  Q  L  K  *  D  S  C  C  S  Y  G  S  C  S  Y  F  *  S  F  *  T  L  Q  G  L  H  A  L  S  F  F  F  D  T  V  Q  V  G  *  *  N  S  F  Q  G  I  V  N  L  *  P  N  *  Y  S  *  Q  N  C  C  I  N  C  Q  Q  G  *  T  I  G  S  L  S  N  T  C  T  T  S  E  G  A  T  *  M  L  E  W  E  K  A  L  *  I  H  K  S  *  L  L  N  I  R  T  T  I  R  T  S  V  *  R  F  V  *  S  *  K  F  T  C  V  *  E  S  F  R  L  K  F  T  L  *  *  A  C  W  V  H  H  Q  Q  S  V  C  K  F  L  L  G  C  Y  R  L  G  Q  F  S  Y  K  G  Q  A  F  W  I  *  L  Q  C  T  R  S  F  K  I  S  A  C  R  Q  T  R  I  V  F  F  C  C  L  I  A  L  A  Q  V  D  C  I  T  *  N  T  T  H  C  R  K  H  F  R  P  A  R  M  E  T   : G  G  *  C  T  M  Q  C  C  I  S  G  T  W  K  S  C  N  S  N  C  S  S   : G  *  E  G  I  A  T  M  D  C  *  R  *  *  S  W  S  A  N  V  E  N  *  P  T  Y  S  K  I  D  R  R  T  D  K  E  S  *  Y  S  G  I  F  G  N  S  G  *  *  P  *  P  P  F  T  G  H  R  W  D  A  C  R  W  R  S  M  H  L  T  T  A  R   : A  F  G  S  D  S  *  S  N  S  T  S  T  *  L  G  R  I  W  T  I  S  C  *  W  P  H  K  P  I  E   : V  S  F  A  C  H  S  S  L  C  F  S  S  K  C  T  C  P  C  S  Q  Y  I  S  S  S  *  H  Y  V  C  W  F  S  K  T  K  C  Q  T  S  S  R  C  *  C  H  P  *  S  C  L  S  V  P  *  H  K  H  H  *  L  E  S  G  Y  *  E  V  F  D  V  *  S  *  *  P  A  *  K  W  N  V  C  S  I  S  *  Y  C  C  *  G  I  R  L  Y  Y  I  S  L  K  T  H  F  S  G  A  Y  I  R  S  L  C  T  I  P  Y  L  S  C  K  S  Q  L  E  N  I  F  *  S  P  V  I  V  V  Q  W  H  V  D  S  S  T  C  F  V  F  H  L  A  Q  I  V  F  V  V  L  P  N  T  N  M  I  C  G  N  K  *  M  *  L  F  N  I  L  S  D  P  L  K  A  G  S  A  L  E  L  N  F  S  Y  H  V  I  T  F  L  L  C  I  V  H  S  A  D  K  K  S  S  I  Q  F  C  F  P  L </second_frame>
            <third_frame>   E  Y  L  P  R  G  S  P  S  E  T  C  L  M  K  I  F  V  A  T  V  E  A  I  L  Q  R  T  F  P  P  D  S  S  R  E  E  T  R  K  T  R  Y  I  F  G  S  A  L  K  N  L  A  V  A  E  L  R  T  M  V  H  S  L  F  L  E  S  C  A  S  V  E  L  A  S  R  L  L  F  V  I  L  T  V  C  V  S  H  E  A  K  P  N  G  N  K  R  P  K  G  E  D  T  H  S  P  S  E  I  G  V  D  T  Q  A  T  I  G  K  Q  R  P  I  G  S  K  K  V  K  K  Q  G  P  V  A  A  F  D  S  Y  V  L  A  S  V  C  G  L  S  C  E  L  Q  L  F  S  M  I  S  R  G  P  N  Y  P  D  P  K  I  I  M  D  E  A  K  P  A  S  D  S  S  T  E  L  R  N  G  I  H  S  A  V  S  H  T  R  R  M  L  E  I  L  E  A  L  F  S  L  K  P  S  S  V  G  T  S  W  S  F  S  S  N  E  I  V  A  A  A  M  V  A  A  H  I  S  D  L  F  K  R  S  K  A  C  M  H  S  L  S  S  L  I  R  C  K  W  D  N  E  I  H  S  R  A  S  S  I  Y  N  L  I  D  I  H  S  K  T  V  A  S  I  V  N  K  A  E  P  L  E  A  Y  L  I  H  V  P  L  L  K  E  R  P  R  C  L  N  G  K  K  H  Y  K  Y  T  S  R  N  C  L  T  S  E  Q  P  S  G  P  L  C  K  D  S  Y  D  R  R  S  S  L  V  C  E  K  A  S  D  S  S  S  H  S  S  E  L  A  G  Y  T  I  S  K  V  F  A  N  F  S  L  D  A  T  D  L  A  N  F  L  T  K  D  R  H  F  G  F  N  C  N  A  Q  D  L  L  K  S  V  L  A  D  K  Q  E  L  C  F  S  V  V  S  L  L  W  H  K  L  I  A  S  P  E  T  Q  P  I  A  E  S  T  S  A  Q  Q  G  W  R  Q  :  V  V  D  A  L  C  N  V  V  S  A  A  P  G  K  A  A  T  A  I  V  L  Q  :  A  E  R  E  L  Q  P  W  I  A  K  D  D  E  V  G  Q  Q  M  W  R  I  N  Q  R  I  V  K  L  I  A  E  L  I  R  N  H  D  I  A  E  S  L  V  I  L  A  S  N  P  D  L  L  L  R  A  T  D  G  M  L  V  D  G  E  A  C  T  L  P  Q  L  E  :  L  L  E  V  T  A  R  A  I  Q  P  V  L  D  W  G  E  S  G  Q  S  V  A  D  G  L  T  N  L  L  K  :  C  R  L  P  A  T  V  R  C  V  S  H  P  S  A  H  V  R  A  L  S  T  S  V  L  R  D  I  M  Y  A  G  S  V  K  P  S  A  K  Q  A  A  D  V  N  A  I  H  N  P  A  Y  Q  Y  L  S  I  S  I  I  D  W  K  A  D  I  E  K  C  L  M  C  E  A  S  S  R  L  E  N  G  M  S  A  Q  F  L  D  T  A  A  R  E  L  G  C  T  I  S  V  *  K  L  T  F  L  G  H  I  L  G  L  S  V  P  Y  H  T  Y  L  V  K  V  S  *  K  I  Y  F  R  V  L  *  L  L  Y  N  G  M  *  I  V  P  L  V  L  F  F  I  W  H  R  L  C  L  L  Y  F  Q  I  Q  T  *  F  V  E  I  S  R  C  S  C  L  I  F  *  V  T  H  *  R  L  V  Q  L  *  N  *  I  F  P  I  M  *  *  P  S  Y  F  V  L  Y  I  Q  Q  I  K  S  H  L  F  S  F  V  F  L   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0193C03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39608" stop="40918"/>
                    <exon start="42249" stop="42317"/>
                    <exon start="43014" stop="43232"/>
                    <exon start="43433" stop="43525"/>
                    <exon start="44793" stop="45095"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1992</number_coding_nucleotides>
                  <number_encoded_amino_acids>664</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EYLPRGSPSETCLMKIFVATVEAILQRTFPPDSSREETRKTRYIFGSALKNLAVAELRTMVHSLFLESCASVELASRLLFVILTVCVSHEAKPNGNKRPKGEDTHSPSEIGVDTQATIGKQRPIGSKKVKKQGPVAAFDSYVLASVCGLSCELQLFSMISRGPNYPDPKIIMDEAKPASDSSTELRNGIHSAVSHTRRMLEILEALFSLKPSSVGTSWSFSSNEIVAAAMVAAHISDLFKRSKACMHSLSSLIRCKWDNEIHSRASSIYNLIDIHSKTVASIVNKAEPLEAYLIHVPLLKERPRCLNGKKHYKYTSRNCLTSEQPSGPLCKDSYDRRSSLVCEKASDSSSHSSELAGYTISKVFANFSLDATDLANFLTKDRHFGFNCNAQDLLKSVLADKQELCFSVVSLLWHKLIASPETQPIAESTSAQQGWRQVVDALCNVVSAAPGKAATAIVLQAERELQPWIAKDDEVGQQMWRINQRIVKLIAELIRNHDIAESLVILASNPDLLLRATDGMLVDGEACTLPQLELLEVTARAIQPVLDWGESGQSVADGLTNLLKCRLPATVRCVSHPSAHVRALSTSVLRDIMYAGSVKPSAKQAADVNAIHNPAYQYLSISIIDWKADIEKCLMCEASSRLENGMSAQFLDTAARELGCTISV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="40754" e_stop="40918"/>
            <exon e_start="42249" e_stop="43525"/>
            <exon e_start="44793" e_stop="45431"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.862" e_score="0.998"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40754" e_stop="40918" e_length="165"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="40919" i_stop="42248" i_length="1330"/>
          </intron>
          <exon e_serial="2" e_score="0.998">
            <gDNA_exon_boundary e_start="42249" e_stop="43525" e_length="1277"/>
          </exon>
          <intron i_serial="2" don_prob="0.998" acc_prob="0.862">
            <gDNA_intron_boundary i_start="43526" i_stop="44792" i_length="1267"/>
          </intron>
          <exon e_serial="3" e_score="0.998">
            <gDNA_exon_boundary e_start="44793" e_stop="45431" e_length="639"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40754" stop="40918"/>
              <exon start="42249" stop="42728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40787" stop="40918"/>
              <exon start="42249" stop="42696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40787" stop="40918"/>
              <exon start="42249" stop="42687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40787" stop="40918"/>
              <exon start="42249" stop="42651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40787" stop="40918"/>
              <exon start="42249" stop="42525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40787" stop="40918"/>
              <exon start="42249" stop="42371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42498" stop="43055"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299652" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42499" stop="43029"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299806" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42716" stop="43007"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257972" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43027" stop="43525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331619" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43436" stop="43525"/>
              <exon start="44793" stop="45070"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257961" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43487" stop="43525"/>
              <exon start="44793" stop="45431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373739" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43489" stop="43525"/>
              <exon start="44793" stop="45245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44939" stop="45301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45093" stop="45431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45154" stop="45421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375485" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTTTGGATTTAATTGCAATGCACAAGATCTTTTAAAATCAGTGCTTGCAGACAAACAAGAATTGTGTTTTTCTGTTGTCTCATTGCTCTGGCACAAGTTGATTGCATCACCTGAAACACAACCCATTGCAGAAAGCACTTCCGCCCAGCAAGGATGGAGACAG : GTGGTTGATGCACTATGCAATGTTGTATCAGCGGCACCTGGAAAAGCTGCAACAGCAATTGTTCTTCAGGTCCAGATTTCGCTTTAACTGTATTTGGTCATTATAGATCATGATCATTTTTTGTTAGGCTGCAGCTAGTATGCACAGTTCATATTTATTTGGATCCAAATGGCTTAACAGATACACCTGCTATTTCAAATAATTACATTCTTTTCTAGGGAAAAGAAACAAGTCTATCCTTGTCCTATCCGAAATTGAGAAATTTTGCCCTCCAATGAACTTTTGGTCTAATATTACTGATGCATTAGGATAAAAAGTCTTTTTTTTCCTTAACTCCTAACAAAACGCCAAGGGTAATTTTAAACTAAAGTTGAAAGACAAGGGGTAAGCTTGGACCTTTTTTCACAAATAATTTGGACACATGGAGTCCACCTATTTCATGTTGGAGTTCCGTTAATTAAAAGAAAAAATATAGGATGATTTGCTTATGGCAAGGGTATTAATAACGGACCCAAATTGTATGGAGAAAAAATTGAGCAATTCCGAATAGTTTAGGGGCAATTTCTGGAAGTTTTCCCTTCTCTGTCATATTTTTGGCGTTATCACATGGCAAATACATTTATGTTTATGGTACAGTACCTTTCCGGTTCCAGGGTTTCTTAGACTTGCATGCATTAATAGTTATCATCGCTTTGCTTCTAGCTGTAAGTAGGTCTTCATCACAATATTTGTTTGGTCACTTTCTTGCCAAACTTTACTTGTCAGGCTGAGAGGGAATTGCAACCATGGATTGCTAAAGATGATGAAGTTGGTCAGCAAATGTGGAGAATTAACCAACGTATAGTAAAATTGATCGCAGAACTGATAAGGAATCATGATATAGCGGAATCTTTGGTAATTCTGGCTAGTAACCCTGACCTCCTTTTACGGGCCACAGATGGGATGCTTGTCGATGGAGAAGCATGCACCTTACCACAGCTAGAGGTAATGACATATTTAGATTTCTGGTTTAGAGGTAACATCTTTTATACTACTTATTTCTCACCTGATGAATCTATGATTCAGAAAGCTACGACTTCCTTTATTTTCGTGAGTACTTGAATAGATGATTGATTCATCATATTCAATATCTTCTGTATTTTCTGATATATTTACATCCTTGCCCCTTAAAAAAAATTGAGCAGCTTTTGGAAGTGACAGCTAGAGCAATTCAACCAGTACTTGACTGGGGAGAATCTGGACAATCAGTTGCTGATGGCCTCACAAACCTATTGAAG : TGTCGTTTGCCTGCCACAGTTCGCTGTGTTTCTCATCCAAGTGCACATGTCCGTGCTCTCAGTACATCAGTTCTTCGTGACATTATGTATGCTGGTTCAGTAAAACCAAGTGCCAAACAAGCAGCAGATGTTAATGCCATCCATAATCCTGCTTATCAGTACCTTAGCATAAGCATCATTGACTGGAAAGCGGATATTGAGAAGTGTTTGATGTGTGAAGCTAGTAGCCGGCTTGAAAATGGAATGTCTGCTCAATTTCTTGATACTGCTGCTAGGGAATTAGGCTGTACTATATCAGTCTGAAAACTCACTTTTCTGGGGCATATATTAGGTCTCTCTGTACCATACCATACCTATCTTGTAAAAGTCAGTTAGAAAATATATTTTAGAGTCCTGTGATTGTTGTACAATGGCATGTAGATAGTTCCACTTGTTTTGTTTTTCATTTGGCACAGATTGTGTTTGTTGTACTTCCAAATACAAACATGATTTGTGGAAATAAGTAGATGTAGTTGTTTAATATTTTGAGTGACCCACTAAAGGCTGGTTCAGCTTTAGAATTGAATTTTTCCTATCATGTAATAACCTTCTTACTTTGTATTGTACATTCAGCAGATAAAAAGTCATCTATTCAGTTTT</gDNA_template>
            <first_frame> H  F  G  F  N  C  N  A  Q  D  L  L  K  S  V  L  A  D  K  Q  E  L  C  F  S  V  V  S  L  L  W  H  K  L  I  A  S  P  E  T  Q  P  I  A  E  S  T  S  A  Q  Q  G  W  R  Q  :  V  V  D  A  L  C  N  V  V  S  A  A  P  G  K  A  A  T  A  I  V  L  Q  V  Q  I  S  L  *  L  Y  L  V  I  I  D  H  D  H  F  L  L  G  C  S  *  Y  A  Q  F  I  F  I  W  I  Q  M  A  *  Q  I  H  L  L  F  Q  I  I  T  F  F  S  R  E  K  K  Q  V  Y  P  C  P  I  R  N  *  E  I  L  P  S  N  E  L  L  V  *  Y  Y  *  C  I  R  I  K  S  L  F  F  P  *  L  L  T  K  R  Q  G  *  F  *  T  K  V  E  R  Q  G  V  S  L  D  L  F  S  Q  I  I  W  T  H  G  V  H  L  F  H  V  G  V  P  L  I  K  R  K  N  I  G  *  F  A  Y  G  K  G  I  N  N  G  P  K  L  Y  G  E  K  I  E  Q  F  R  I  V  *  G  Q  F  L  E  V  F  P  S  L  S  Y  F  W  R  Y  H  M  A  N  T  F  M  F  M  V  Q  Y  L  S  G  S  R  V  S  *  T  C  M  H  *  *  L  S  S  L  C  F  *  L  *  V  G  L  H  H  N  I  C  L  V  T  F  L  P  N  F  T  C  Q  A  E  R  E  L  Q  P  W  I  A  K  D  D  E  V  G  Q  Q  M  W  R  I  N  Q  R  I  V  K  L  I  A  E  L  I  R  N  H  D  I  A  E  S  L  V  I  L  A  S  N  P  D  L  L  L  R  A  T  D  G  M  L  V  D  G  E  A  C  T  L  P  Q  L  E  V  M  T  Y  L  D  F  W  F  R  G  N  I  F  Y  T  T  Y  F  S  P  D  E  S  M  I  Q  K  A  T  T  S  F  I  F  V  S  T  *  I  D  D  *  F  I  I  F  N  I  F  C  I  F  *  Y  I  Y  I  L  A  P  *  K  K  L  S  S  F  W  K  *  Q  L  E  Q  F  N  Q  Y  L  T  G  E  N  L  D  N  Q  L  L  M  A  S  Q  T  Y  *  S :   V  V  C  L  P  Q  F  A  V  F  L  I  Q  V  H  M  S  V  L  S  V  H  Q  F  F  V  T  L  C  M  L  V  Q  *  N  Q  V  P  N  K  Q  Q  M  L  M  P  S  I  I  L  L  I  S  T  L  A  *  A  S  L  T  G  K  R  I  L  R  S  V  *  C  V  K  L  V  A  G  L  K  M  E  C  L  L  N  F  L  I  L  L  L  G  N  *  A  V  L  Y  Q  S  E  N  S  L  F  W  G  I  Y  *  V  S  L  Y  H  T  I  P  I  L  *  K  S  V  R  K  Y  I  L  E  S  C  D  C  C  T  M  A  C  R  *  F  H  L  F  C  F  S  F  G  T  D  C  V  C  C  T  S  K  Y  K  H  D  L  W  K  *  V  D  V  V  V  *  Y  F  E  *  P  T  K  G  W  F  S  F  R  I  E  F  F  L  S  C  N  N  L  L  T  L  Y  C  T  F  S  R  *  K  V  I  Y  S  V   </first_frame>
            <second_frame>  I  L  D  L  I  A  M  H  K  I  F  *  N  Q  C  L  Q  T  N  K  N  C  V  F  L  L  S  H  C  S  G  T  S  *  L  H  H  L  K  H  N  P  L  Q  K  A  L  P  P  S  K  D  G  D  R :   W  L  M  H  Y  A  M  L  Y  Q  R  H  L  E  K  L  Q  Q  Q  L  F  F  R  S  R  F  R  F  N  C  I  W  S  L  *  I  M  I  I  F  C  *  A  A  A  S  M  H  S  S  Y  L  F  G  S  K  W  L  N  R  Y  T  C  Y  F  K  *  L  H  S  F  L  G  K  R  N  K  S  I  L  V  L  S  E  I  E  K  F  C  P  P  M  N  F  W  S  N  I  T  D  A  L  G  *  K  V  F  F  F  L  N  S  *  Q  N  A  K  G  N  F  K  L  K  L  K  D  K  G  *  A  W  T  F  F  H  K  *  F  G  H  M  E  S  T  Y  F  M  L  E  F  R  *  L  K  E  K  I  *  D  D  L  L  M  A  R  V  L  I  T  D  P  N  C  M  E  K  K  L  S  N  S  E  *  F  R  G  N  F  W  K  F  S  L  L  C  H  I  F  G  V  I  T  W  Q  I  H  L  C  L  W  Y  S  T  F  P  V  P  G  F  L  R  L  A  C  I  N  S  Y  H  R  F  A  S  S  C  K  *  V  F  I  T  I  F  V  W  S  L  S  C  Q  T  L  L  V  R  L  R  G  N  C  N  H  G  L  L  K  M  M  K  L  V  S  K  C  G  E  L  T  N  V  *  *  N  *  S  Q  N  *  *  G  I  M  I  *  R  N  L  W  *  F  W  L  V  T  L  T  S  F  Y  G  P  Q  M  G  C  L  S  M  E  K  H  A  P  Y  H  S  *  R  *  *  H  I  *  I  S  G  L  E  V  T  S  F  I  L  L  I  S  H  L  M  N  L  *  F  R  K  L  R  L  P  L  F  S  *  V  L  E  *  M  I  D  S  S  Y  S  I  S  S  V  F  S  D  I  F  T  S  L  P  L  K  K  N  *  A  A  F  G  S  D  S  *  S  N  S  T  S  T  *  L  G  R  I  W  T  I  S  C  *  W  P  H  K  P  I  E   : V  S  F  A  C  H  S  S  L  C  F  S  S  K  C  T  C  P  C  S  Q  Y  I  S  S  S  *  H  Y  V  C  W  F  S  K  T  K  C  Q  T  S  S  R  C  *  C  H  P  *  S  C  L  S  V  P  *  H  K  H  H  *  L  E  S  G  Y  *  E  V  F  D  V  *  S  *  *  P  A  *  K  W  N  V  C  S  I  S  *  Y  C  C  *  G  I  R  L  Y  Y  I  S  L  K  T  H  F  S  G  A  Y  I  R  S  L  C  T  I  P  Y  L  S  C  K  S  Q  L  E  N  I  F  *  S  P  V  I  V  V  Q  W  H  V  D  S  S  T  C  F  V  F  H  L  A  Q  I  V  F  V  V  L  P  N  T  N  M  I  C  G  N  K  *  M  *  L  F  N  I  L  S  D  P  L  K  A  G  S  A  L  E  L  N  F  S  Y  H  V  I  T  F  L  L  C  I  V  H  S  A  D  K  K  S  S  I  Q  F  </second_frame>
            <third_frame>   F  W  I  *  L  Q  C  T  R  S  F  K  I  S  A  C  R  Q  T  R  I  V  F  F  C  C  L  I  A  L  A  Q  V  D  C  I  T  *  N  T  T  H  C  R  K  H  F  R  P  A  R  M  E  T   : G  G  *  C  T  M  Q  C  C  I  S  G  T  W  K  S  C  N  S  N  C  S  S  G  P  D  F  A  L  T  V  F  G  H  Y  R  S  *  S  F  F  V  R  L  Q  L  V  C  T  V  H  I  Y  L  D  P  N  G  L  T  D  T  P  A  I  S  N  N  Y  I  L  F  *  G  K  E  T  S  L  S  L  S  Y  P  K  L  R  N  F  A  L  Q  *  T  F  G  L  I  L  L  M  H  *  D  K  K  S  F  F  S  L  T  P  N  K  T  P  R  V  I  L  N  *  S  *  K  T  R  G  K  L  G  P  F  F  T  N  N  L  D  T  W  S  P  P  I  S  C  W  S  S  V  N  *  K  K  K  Y  R  M  I  C  L  W  Q  G  Y  *  *  R  T  Q  I  V  W  R  K  N  *  A  I  P  N  S  L  G  A  I  S  G  S  F  P  F  S  V  I  F  L  A  L  S  H  G  K  Y  I  Y  V  Y  G  T  V  P  F  R  F  Q  G  F  L  D  L  H  A  L  I  V  I  I  A  L  L  L  A  V  S  R  S  S  S  Q  Y  L  F  G  H  F  L  A  K  L  Y  L  S  G  *  E  G  I  A  T  M  D  C  *  R  *  *  S  W  S  A  N  V  E  N  *  P  T  Y  S  K  I  D  R  R  T  D  K  E  S  *  Y  S  G  I  F  G  N  S  G  *  *  P  *  P  P  F  T  G  H  R  W  D  A  C  R  W  R  S  M  H  L  T  T  A  R  G  N  D  I  F  R  F  L  V  *  R  *  H  L  L  Y  Y  L  F  L  T  *  *  I  Y  D  S  E  S  Y  D  F  L  Y  F  R  E  Y  L  N  R  *  L  I  H  H  I  Q  Y  L  L  Y  F  L  I  Y  L  H  P  C  P  L  K  K  I  E  Q  L  L  E  V  T  A  R  A  I  Q  P  V  L  D  W  G  E  S  G  Q  S  V  A  D  G  L  T  N  L  L  K  :  C  R  L  P  A  T  V  R  C  V  S  H  P  S  A  H  V  R  A  L  S  T  S  V  L  R  D  I  M  Y  A  G  S  V  K  P  S  A  K  Q  A  A  D  V  N  A  I  H  N  P  A  Y  Q  Y  L  S  I  S  I  I  D  W  K  A  D  I  E  K  C  L  M  C  E  A  S  S  R  L  E  N  G  M  S  A  Q  F  L  D  T  A  A  R  E  L  G  C  T  I  S  V  *  K  L  T  F  L  G  H  I  L  G  L  S  V  P  Y  H  T  Y  L  V  K  V  S  *  K  I  Y  F  R  V  L  *  L  L  Y  N  G  M  *  I  V  P  L  V  L  F  F  I  W  H  R  L  C  L  L  Y  F  Q  I  Q  T  *  F  V  E  I  S  R  C  S  C  L  I  F  *  V  T  H  *  R  L  V  Q  L  *  N  *  I  F  P  I  M  *  *  P  S  Y  F  V  L  Y  I  Q  Q  I  K  S  H  L  F  S  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0193C03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="43358" stop="43525"/>
                    <exon start="44793" stop="45095"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIHHIQYLLYFLIYLHPCPLKKIEQLLEVTARAIQPVLDWGESGQSVADGLTNLLKCRLPATVRCVSHPSAHVRALSTSVLRDIMYAGSVKPSAKQAADVNAIHNPAYQYLSISIIDWKADIEKCLMCEASSRLENGMSAQFLDTAARELGCTISV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0193C03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42957" stop="43349"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>390</number_coding_nucleotides>
                  <number_encoded_amino_acids>130</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VGLHHNICLVTFLPNFTCQAERELQPWIAKDDEVGQQMWRINQRIVKLIAELIRNHDIAESLVILASNPDLLLRATDGMLVDGEACTLPQLEVMTYLDFWFRGNIFYTTYFSPDESMIQKATTSFIFVST*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0193C03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40754" stop="40918"/>
                    <exon start="42249" stop="42335"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFGFNCNAQDLLKSVLADKQELCFSVVSLLWHKLIASPETQPIAESTSAQQGWRQVVDALCNVVSAAPGKAATAIVLQVQISL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="40754" e_stop="40918"/>
            <exon e_start="42249" e_stop="42884"/>
            <exon e_start="43467" e_stop="43525"/>
            <exon e_start="44793" e_stop="45431"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.975"/>
          <exon-intron don_prob="0.998" acc_prob="0.862" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40754" e_stop="40918" e_length="165"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.998">
            <gDNA_intron_boundary i_start="40919" i_stop="42248" i_length="1330"/>
          </intron>
          <exon e_serial="2" e_score="0.975">
            <gDNA_exon_boundary e_start="42249" e_stop="42884" e_length="636"/>
          </exon>
          <intron i_serial="2" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="42885" i_stop="43466" i_length="582"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="43467" e_stop="43525" e_length="59"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.862">
            <gDNA_intron_boundary i_start="43526" i_stop="44792" i_length="1267"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="44793" e_stop="45431" e_length="639"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40754" stop="40918"/>
              <exon start="42249" stop="42728"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314833" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40787" stop="40918"/>
              <exon start="42249" stop="42696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40787" stop="40918"/>
              <exon start="42249" stop="42687"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258387" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40787" stop="40918"/>
              <exon start="42249" stop="42651"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261748" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40787" stop="40918"/>
              <exon start="42249" stop="42525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40787" stop="40918"/>
              <exon start="42249" stop="42371"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375486" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="42365" stop="42884"/>
              <exon start="43467" stop="43525"/>
              <exon start="44793" stop="44835"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342662" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43487" stop="43525"/>
              <exon start="44793" stop="45431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E373739" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="43489" stop="43525"/>
              <exon start="44793" stop="45245"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241534" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="44939" stop="45301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E340699" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45093" stop="45431"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E228382" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45154" stop="45421"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375485" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CATTTTGGATTTAATTGCAATGCACAAGATCTTTTAAAATCAGTGCTTGCAGACAAACAAGAATTGTGTTTTTCTGTTGTCTCATTGCTCTGGCACAAGTTGATTGCATCACCTGAAACACAACCCATTGCAGAAAGCACTTCCGCCCAGCAAGGATGGAGACAG : GTGGTTGATGCACTATGCAATGTTGTATCAGCGGCACCTGGAAAAGCTGCAACAGCAATTGTTCTTCAGGTCCAGATTTCGCTTTAACTGTATTTGGTCATTATAGATCATGATCATTTTTTGTTAGGCTGCAGCTAGTATGCACAGTTCATATTTATTTGGATCCAAATGGCTTAACAGATACACCTGCTATTTCAAATAATTACATTCTTTTCTAGGGAAAAGAAACAAGTCTATCCTTGTCCTATCCGAAATTGAGAAATTTTGCCCTCCAATGAACTTTTGGTCTAATATTACTGATGCATTAGGATAAAAAGTCTTTTTTTTCCTTAACTCCTAACAAAACGCCAAGGGTAATTTTAAACTAAAGTTGAAAGACAAGGGGTAAGCTTGGACCTTTTTTCACAAATAATTTGGACACATGGAGTCCACCTATTTCATGTTGGAGTTCCGTTAATTAAAAGAAAAAATATAGGATGATTTGCTTATGGCAAGGGTATTAATAACGGACCCAAATTGTATGGAGAAAAAATTGAGCAATTCCGAATAGTTTAGGGGCAATTTCTGGAAGTTTTCCCTTCTCTGTCATATTTTTGGCGTTATCACATGGCAAATACATTTATGTTTATGGTACAG : TACTTGACTGGGGAGAATCTGGACAATCAGTTGCTGATGGCCTCACAAACCTATTGAAG : TGTCGTTTGCCTGCCACAGTTCGCTGTGTTTCTCATCCAAGTGCACATGTCCGTGCTCTCAGTACATCAGTTCTTCGTGACATTATGTATGCTGGTTCAGTAAAACCAAGTGCCAAACAAGCAGCAGATGTTAATGCCATCCATAATCCTGCTTATCAGTACCTTAGCATAAGCATCATTGACTGGAAAGCGGATATTGAGAAGTGTTTGATGTGTGAAGCTAGTAGCCGGCTTGAAAATGGAATGTCTGCTCAATTTCTTGATACTGCTGCTAGGGAATTAGGCTGTACTATATCAGTCTGAAAACTCACTTTTCTGGGGCATATATTAGGTCTCTCTGTACCATACCATACCTATCTTGTAAAAGTCAGTTAGAAAATATATTTTAGAGTCCTGTGATTGTTGTACAATGGCATGTAGATAGTTCCACTTGTTTTGTTTTTCATTTGGCACAGATTGTGTTTGTTGTACTTCCAAATACAAACATGATTTGTGGAAATAAGTAGATGTAGTTGTTTAATATTTTGAGTGACCCACTAAAGGCTGGTTCAGCTTTAGAATTGAATTTTTCCTATCATGTAATAACCTTCTTACTTTGTATTGTACATTCAGCAGATAAAAAGTCATCTATTCAGTTTT</gDNA_template>
            <first_frame> H  F  G  F  N  C  N  A  Q  D  L  L  K  S  V  L  A  D  K  Q  E  L  C  F  S  V  V  S  L  L  W  H  K  L  I  A  S  P  E  T  Q  P  I  A  E  S  T  S  A  Q  Q  G  W  R  Q  :  V  V  D  A  L  C  N  V  V  S  A  A  P  G  K  A  A  T  A  I  V  L  Q  V  Q  I  S  L  *  L  Y  L  V  I  I  D  H  D  H  F  L  L  G  C  S  *  Y  A  Q  F  I  F  I  W  I  Q  M  A  *  Q  I  H  L  L  F  Q  I  I  T  F  F  S  R  E  K  K  Q  V  Y  P  C  P  I  R  N  *  E  I  L  P  S  N  E  L  L  V  *  Y  Y  *  C  I  R  I  K  S  L  F  F  P  *  L  L  T  K  R  Q  G  *  F  *  T  K  V  E  R  Q  G  V  S  L  D  L  F  S  Q  I  I  W  T  H  G  V  H  L  F  H  V  G  V  P  L  I  K  R  K  N  I  G  *  F  A  Y  G  K  G  I  N  N  G  P  K  L  Y  G  E  K  I  E  Q  F  R  I  V  *  G  Q  F  L  E  V  F  P  S  L  S  Y  F  W  R  Y  H  M  A  N  T  F  M  F  M  V  Q  :  Y  L  T  G  E  N  L  D  N  Q  L  L  M  A  S  Q  T  Y  *  S :   V  V  C  L  P  Q  F  A  V  F  L  I  Q  V  H  M  S  V  L  S  V  H  Q  F  F  V  T  L  C  M  L  V  Q  *  N  Q  V  P  N  K  Q  Q  M  L  M  P  S  I  I  L  L  I  S  T  L  A  *  A  S  L  T  G  K  R  I  L  R  S  V  *  C  V  K  L  V  A  G  L  K  M  E  C  L  L  N  F  L  I  L  L  L  G  N  *  A  V  L  Y  Q  S  E  N  S  L  F  W  G  I  Y  *  V  S  L  Y  H  T  I  P  I  L  *  K  S  V  R  K  Y  I  L  E  S  C  D  C  C  T  M  A  C  R  *  F  H  L  F  C  F  S  F  G  T  D  C  V  C  C  T  S  K  Y  K  H  D  L  W  K  *  V  D  V  V  V  *  Y  F  E  *  P  T  K  G  W  F  S  F  R  I  E  F  F  L  S  C  N  N  L  L  T  L  Y  C  T  F  S  R  *  K  V  I  Y  S  V   </first_frame>
            <second_frame>  I  L  D  L  I  A  M  H  K  I  F  *  N  Q  C  L  Q  T  N  K  N  C  V  F  L  L  S  H  C  S  G  T  S  *  L  H  H  L  K  H  N  P  L  Q  K  A  L  P  P  S  K  D  G  D  R :   W  L  M  H  Y  A  M  L  Y  Q  R  H  L  E  K  L  Q  Q  Q  L  F  F  R  S  R  F  R  F  N  C  I  W  S  L  *  I  M  I  I  F  C  *  A  A  A  S  M  H  S  S  Y  L  F  G  S  K  W  L  N  R  Y  T  C  Y  F  K  *  L  H  S  F  L  G  K  R  N  K  S  I  L  V  L  S  E  I  E  K  F  C  P  P  M  N  F  W  S  N  I  T  D  A  L  G  *  K  V  F  F  F  L  N  S  *  Q  N  A  K  G  N  F  K  L  K  L  K  D  K  G  *  A  W  T  F  F  H  K  *  F  G  H  M  E  S  T  Y  F  M  L  E  F  R  *  L  K  E  K  I  *  D  D  L  L  M  A  R  V  L  I  T  D  P  N  C  M  E  K  K  L  S  N  S  E  *  F  R  G  N  F  W  K  F  S  L  L  C  H  I  F  G  V  I  T  W  Q  I  H  L  C  L  W  Y  S :   T  *  L  G  R  I  W  T  I  S  C  *  W  P  H  K  P  I  E   : V  S  F  A  C  H  S  S  L  C  F  S  S  K  C  T  C  P  C  S  Q  Y  I  S  S  S  *  H  Y  V  C  W  F  S  K  T  K  C  Q  T  S  S  R  C  *  C  H  P  *  S  C  L  S  V  P  *  H  K  H  H  *  L  E  S  G  Y  *  E  V  F  D  V  *  S  *  *  P  A  *  K  W  N  V  C  S  I  S  *  Y  C  C  *  G  I  R  L  Y  Y  I  S  L  K  T  H  F  S  G  A  Y  I  R  S  L  C  T  I  P  Y  L  S  C  K  S  Q  L  E  N  I  F  *  S  P  V  I  V  V  Q  W  H  V  D  S  S  T  C  F  V  F  H  L  A  Q  I  V  F  V  V  L  P  N  T  N  M  I  C  G  N  K  *  M  *  L  F  N  I  L  S  D  P  L  K  A  G  S  A  L  E  L  N  F  S  Y  H  V  I  T  F  L  L  C  I  V  H  S  A  D  K  K  S  S  I  Q  F  </second_frame>
            <third_frame>   F  W  I  *  L  Q  C  T  R  S  F  K  I  S  A  C  R  Q  T  R  I  V  F  F  C  C  L  I  A  L  A  Q  V  D  C  I  T  *  N  T  T  H  C  R  K  H  F  R  P  A  R  M  E  T   : G  G  *  C  T  M  Q  C  C  I  S  G  T  W  K  S  C  N  S  N  C  S  S  G  P  D  F  A  L  T  V  F  G  H  Y  R  S  *  S  F  F  V  R  L  Q  L  V  C  T  V  H  I  Y  L  D  P  N  G  L  T  D  T  P  A  I  S  N  N  Y  I  L  F  *  G  K  E  T  S  L  S  L  S  Y  P  K  L  R  N  F  A  L  Q  *  T  F  G  L  I  L  L  M  H  *  D  K  K  S  F  F  S  L  T  P  N  K  T  P  R  V  I  L  N  *  S  *  K  T  R  G  K  L  G  P  F  F  T  N  N  L  D  T  W  S  P  P  I  S  C  W  S  S  V  N  *  K  K  K  Y  R  M  I  C  L  W  Q  G  Y  *  *  R  T  Q  I  V  W  R  K  N  *  A  I  P  N  S  L  G  A  I  S  G  S  F  P  F  S  V  I  F  L  A  L  S  H  G  K  Y  I  Y  V  Y  G  T   : V  L  D  W  G  E  S  G  Q  S  V  A  D  G  L  T  N  L  L  K  :  C  R  L  P  A  T  V  R  C  V  S  H  P  S  A  H  V  R  A  L  S  T  S  V  L  R  D  I  M  Y  A  G  S  V  K  P  S  A  K  Q  A  A  D  V  N  A  I  H  N  P  A  Y  Q  Y  L  S  I  S  I  I  D  W  K  A  D  I  E  K  C  L  M  C  E  A  S  S  R  L  E  N  G  M  S  A  Q  F  L  D  T  A  A  R  E  L  G  C  T  I  S  V  *  K  L  T  F  L  G  H  I  L  G  L  S  V  P  Y  H  T  Y  L  V  K  V  S  *  K  I  Y  F  R  V  L  *  L  L  Y  N  G  M  *  I  V  P  L  V  L  F  F  I  W  H  R  L  C  L  L  Y  F  Q  I  Q  T  *  F  V  E  I  S  R  C  S  C  L  I  F  *  V  T  H  *  R  L  V  Q  L  *  N  *  I  F  P  I  M  *  *  P  S  Y  F  V  L  Y  I  Q  Q  I  K  S  H  L  F  S  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0193C03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="42785" stop="42884"/>
                    <exon start="43467" stop="43525"/>
                    <exon start="44793" stop="45095"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AIPNSLGAISGSFPFSVIFLALSHGKYIYVYGTVLDWGESGQSVADGLTNLLKCRLPATVRCVSHPSAHVRALSTSVLRDIMYAGSVKPSAKQAADVNAIHNPAYQYLSISIIDWKADIEKCLMCEASSRLENGMSAQFLDTAARELGCTISV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0193C03.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="4" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40754" stop="40918"/>
                    <exon start="42249" stop="42335"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>249</number_coding_nucleotides>
                  <number_encoded_amino_acids>83</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HFGFNCNAQDLLKSVLADKQELCFSVVSLLWHKLIASPETQPIAESTSAQQGWRQVVDALCNVVSAAPGKAATAIVLQVQISL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="51142" PGL_stop="46348"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51142" e_stop="50896"/>
            <exon e_start="50035" e_stop="49798"/>
            <exon e_start="49299" e_stop="49115"/>
            <exon e_start="49031" e_stop="48831"/>
            <exon e_start="47817" e_stop="47656"/>
            <exon e_start="46962" e_stop="46348"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.702" acc_prob="0.992" e_score="1.000"/>
          <exon-intron don_prob="0.670" acc_prob="0.710" e_score="1.000"/>
          <exon-intron don_prob="0.520" acc_prob="0.663" e_score="0.990"/>
          <exon-intron don_prob="0.997" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51142" e_stop="50896" e_length="247"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.991">
            <gDNA_intron_boundary i_start="50895" i_stop="50036" i_length="860"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50035" e_stop="49798" e_length="238"/>
          </exon>
          <intron i_serial="2" don_prob="0.702" acc_prob="0.992">
            <gDNA_intron_boundary i_start="49797" i_stop="49300" i_length="498"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="49299" e_stop="49115" e_length="185"/>
          </exon>
          <intron i_serial="3" don_prob="0.670" acc_prob="0.710">
            <gDNA_intron_boundary i_start="49114" i_stop="49032" i_length="83"/>
          </intron>
          <exon e_serial="4" e_score="0.990">
            <gDNA_exon_boundary e_start="49031" e_stop="48831" e_length="201"/>
          </exon>
          <intron i_serial="4" don_prob="0.520" acc_prob="0.663">
            <gDNA_intron_boundary i_start="48830" i_stop="47818" i_length="1013"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="47817" e_stop="47656" e_length="162"/>
          </exon>
          <intron i_serial="5" don_prob="0.997" acc_prob="0.998">
            <gDNA_intron_boundary i_start="47655" i_stop="46963" i_length="693"/>
          </intron>
          <exon e_serial="6" e_score="0.995">
            <gDNA_exon_boundary e_start="46962" e_stop="46348" e_length="615"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51142" stop="50896"/>
              <exon start="50035" stop="49798"/>
              <exon start="49299" stop="49115"/>
              <exon start="49031" stop="48978"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246745" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51132" stop="50896"/>
              <exon start="50035" stop="49918"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E203928" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51128" stop="50896"/>
              <exon start="50035" stop="49798"/>
              <exon start="49299" stop="49183"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330033" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51029" stop="50896"/>
              <exon start="50035" stop="49798"/>
              <exon start="49299" stop="49115"/>
              <exon start="49031" stop="48993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E324674" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50035" stop="49798"/>
              <exon start="49299" stop="49115"/>
              <exon start="49031" stop="48831"/>
              <exon start="47817" stop="47727"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348519" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="48847" stop="48831"/>
              <exon start="47817" stop="47656"/>
              <exon start="46962" stop="46539"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351144" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46934" stop="46348"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711986" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGTGTGTGTTTTCTTCAACTTCTTTCACTTCTTATTTGTCAAAAAAAATCTACCTCACAAATCAATCAAAACTTCCTTCTTTCTTCCCCAATTCCTCCATTTTTTTGCTTACATTCACACAAATACACTCCAAAGTTTGTTCAATTTGGTTATATATATACATATATACGTATAGTAGAGACCCAGTTCGCACGTTAAGATCTGCATCTAAAACGCGTCACTTTCATTTCTCCTTACTTCTCAACTG : GTGGGAAGAGCAAATAAAAGATTTGGAAATTTTGATGTAGAAGTGTGAATGCTTCTATTTGCTGCTTGGAGGGTAAAACTTGTTTCTGGCAGCAAAAAATAAAGGCAAATGGCTCCTTCAAGCAAGGCTAATAAGAAGGCTGCAGGTGATGTGGCTGCATGGATGTTCAATGTGGTCACTTCAGTTGGAATCATTATTGTTAACAAAGCCTTAATGGCTAACTATGGGTTTTTCTTTG : CAACAACATTAACGGGGATGCATTTTGTTACAACAACTTTGATGACGATTGTTCTAAGGTGGCTCGGGATCATCCAAGCTTCTCACTTACCCCTTCTAGATCTTCTAAAATTTGTACTGTGTGCAAACTTCTCTATTGTTGGGATGAACATCAGTTTGATGTGGAACTCGGTGGGATTCTACCAG : ATTGCAAAGTTGAGTATGATCCCTGTCTCCTGCTTACTAGAAGTTTCCTTTGACAAGATCCGCTATTCAAGGGATACAAAGCTGAGCATTGTTGTGGTACTCCTAGGGGTTGCTGTATGTACAGTTACGGACGTGAGTGTTAATACCAAAGGCTTCATTGCTGCCTTTGTAGCTGTATGGAGCACTGCTCTACAACAGTAT : TATGTTCATTACCTTCAAAGGAAATACTCCCTTAGTTCTTTCAATTTGCTGGGACATACTGCACCAGTTCAGGCTGGAAGTCTGCTGCTATTAGGTCCGCTTGTGGATTATTGGTTGACCAACAAGAGGATTGATCACTTTGACTTCACATTTTCATCATCG : GCATTCATCATTCTTTCATGCACTATAGCAATAGGCACCAATCTCAGCCAGTTCATATGCATTGGAAGATTCACTGCTGTTTCATTCCAAGTTATCGGTCATATGAAAACAATACTCGTTTTGGTACTGGGATTCTTGTTCTTTGGGAAAGAAGGTCTCAACATACAAGTGGTAGTTGGCATGCTCATAGCAGTTTGCGGAATGATCTGGTATGGAAATGCCTCATCTAAACCTGGTGGGAAAGAGCGTCGTAGCCATTCAATCAAGCATGGATCAGATTCGTCACAAGCCGATGATAAGGTGTAAGATTTTCTAGCATTGAAGCTGAAACAGAAAAGATAAGCAAAAAAACAAAAAAACAGAACCTTTTATAGTCAGCTGACTCTACATACACAGCTCCTTCGATCGAATTAGATTTTTCTTTATCTTATAATTCATCTTTTTGATAATATAACATTAGTAAGAAAAGATTGAGACTTGGGTATAGAGCTTGGTTTCTTTCGTTCTCCTTTTCTATTTGATCAATAATTTATAGTGAGTGATGAGTTTTTTCTCTCTCAAGGAACTATTGGTCGACATTAAAGGTGTGTTTGGTTGGAAGAAAAATATTTTTTC</gDNA_template>
            <first_frame> C  V  C  F  L  Q  L  L  S  L  L  I  C  Q  K  K  S  T  S  Q  I  N  Q  N  F  L  L  S  S  P  I  P  P  F  F  C  L  H  S  H  K  Y  T  P  K  F  V  Q  F  G  Y  I  Y  T  Y  I  R  I  V  E  T  Q  F  A  R  *  D  L  H  L  K  R  V  T  F  I  S  P  Y  F  S  T   : G  G  K  S  K  *  K  I  W  K  F  *  C  R  S  V  N  A  S  I  C  C  L  E  G  K  T  C  F  W  Q  Q  K  I  K  A  N  G  S  F  K  Q  G  *  *  E  G  C  R  *  C  G  C  M  D  V  Q  C  G  H  F  S  W  N  H  Y  C  *  Q  S  L  N  G  *  L  W  V  F  L  C :   N  N  I  N  G  D  A  F  C  Y  N  N  F  D  D  D  C  S  K  V  A  R  D  H  P  S  F  S  L  T  P  S  R  S  S  K  I  C  T  V  C  K  L  L  Y  C  W  D  E  H  Q  F  D  V  E  L  G  G  I  L  P   : D  C  K  V  E  Y  D  P  C  L  L  L  T  R  S  F  L  *  Q  D  P  L  F  K  G  Y  K  A  E  H  C  C  G  T  P  R  G  C  C  M  Y  S  Y  G  R  E  C  *  Y  Q  R  L  H  C  C  L  C  S  C  M  E  H  C  S  T  T  V   : L  C  S  L  P  S  K  E  I  L  P  *  F  F  Q  F  A  G  T  Y  C  T  S  S  G  W  K  S  A  A  I  R  S  A  C  G  L  L  V  D  Q  Q  E  D  *  S  L  *  L  H  I  F  I  I   : G  I  H  H  S  F  M  H  Y  S  N  R  H  Q  S  Q  P  V  H  M  H  W  K  I  H  C  C  F  I  P  S  Y  R  S  Y  E  N  N  T  R  F  G  T  G  I  L  V  L  W  E  R  R  S  Q  H  T  S  G  S  W  H  A  H  S  S  L  R  N  D  L  V  W  K  C  L  I  *  T  W  W  E  R  A  S  *  P  F  N  Q  A  W  I  R  F  V  T  S  R  *  *  G  V  R  F  S  S  I  E  A  E  T  E  K  I  S  K  K  T  K  K  Q  N  L  L  *  S  A  D  S  T  Y  T  A  P  S  I  E  L  D  F  S  L  S  Y  N  S  S  F  *  *  Y  N  I  S  K  K  R  L  R  L  G  Y  R  A  W  F  L  S  F  S  F  S  I  *  S  I  I  Y  S  E  *  *  V  F  S  L  S  R  N  Y  W  S  T  L  K  V  C  L  V  G  R  K  I  F  F  </first_frame>
            <second_frame>  V  C  V  F  F  N  F  F  H  F  L  F  V  K  K  N  L  P  H  K  S  I  K  T  S  F  F  L  P  Q  F  L  H  F  F  A  Y  I  H  T  N  T  L  Q  S  L  F  N  L  V  I  Y  I  H  I  Y  V  *  *  R  P  S  S  H  V  K  I  C  I  *  N  A  S  L  S  F  L  L  T  S  Q  L  :  V  G  R  A  N  K  R  F  G  N  F  D  V  E  V  *  M  L  L  F  A  A  W  R  V  K  L  V  S  G  S  K  K  *  R  Q  M  A  P  S  S  K  A  N  K  K  A  A  G  D  V  A  A  W  M  F  N  V  V  T  S  V  G  I  I  I  V  N  K  A  L  M  A  N  Y  G  F  F  F   : A  T  T  L  T  G  M  H  F  V  T  T  T  L  M  T  I  V  L  R  W  L  G  I  I  Q  A  S  H  L  P  L  L  D  L  L  K  F  V  L  C  A  N  F  S  I  V  G  M  N  I  S  L  M  W  N  S  V  G  F  Y  Q  :  I  A  K  L  S  M  I  P  V  S  C  L  L  E  V  S  F  D  K  I  R  Y  S  R  D  T  K  L  S  I  V  V  V  L  L  G  V  A  V  C  T  V  T  D  V  S  V  N  T  K  G  F  I  A  A  F  V  A  V  W  S  T  A  L  Q  Q  Y  :  Y  V  H  Y  L  Q  R  K  Y  S  L  S  S  F  N  L  L  G  H  T  A  P  V  Q  A  G  S  L  L  L  L  G  P  L  V  D  Y  W  L  T  N  K  R  I  D  H  F  D  F  T  F  S  S  S  :  A  F  I  I  L  S  C  T  I  A  I  G  T  N  L  S  Q  F  I  C  I  G  R  F  T  A  V  S  F  Q  V  I  G  H  M  K  T  I  L  V  L  V  L  G  F  L  F  F  G  K  E  G  L  N  I  Q  V  V  V  G  M  L  I  A  V  C  G  M  I  W  Y  G  N  A  S  S  K  P  G  G  K  E  R  R  S  H  S  I  K  H  G  S  D  S  S  Q  A  D  D  K  V  *  D  F  L  A  L  K  L  K  Q  K  R  *  A  K  K  Q  K  N  R  T  F  Y  S  Q  L  T  L  H  T  Q  L  L  R  S  N  *  I  F  L  Y  L  I  I  H  L  F  D  N  I  T  L  V  R  K  D  *  D  L  G  I  E  L  G  F  F  R  S  P  F  L  F  D  Q  *  F  I  V  S  D  E  F  F  L  S  Q  G  T  I  G  R  H  *  R  C  V  W  L  E  E  K  Y  F  F </second_frame>
            <third_frame>   C  V  F  S  S  T  S  F  T  S  Y  L  S  K  K  I  Y  L  T  N  Q  S  K  L  P  S  F  F  P  N  S  S  I  F  L  L  T  F  T  Q  I  H  S  K  V  C  S  I  W  L  Y  I  Y  I  Y  T  Y  S  R  D  P  V  R  T  L  R  S  A  S  K  T  R  H  F  H  F  S  L  L  L  N  W :   W  E  E  Q  I  K  D  L  E  I  L  M  *  K  C  E  C  F  Y  L  L  L  G  G  *  N  L  F  L  A  A  K  N  K  G  K  W  L  L  Q  A  R  L  I  R  R  L  Q  V  M  W  L  H  G  C  S  M  W  S  L  Q  L  E  S  L  L  L  T  K  P  *  W  L  T  M  G  F  S  L  :  Q  Q  H  *  R  G  C  I  L  L  Q  Q  L  *  *  R  L  F  *  G  G  S  G  S  S  K  L  L  T  Y  P  F  *  I  F  *  N  L  Y  C  V  Q  T  S  L  L  L  G  *  T  S  V  *  C  G  T  R  W  D  S  T  R :   L  Q  S  *  V  *  S  L  S  P  A  Y  *  K  F  P  L  T  R  S  A  I  Q  G  I  Q  S  *  A  L  L  W  Y  S  *  G  L  L  Y  V  Q  L  R  T  *  V  L  I  P  K  A  S  L  L  P  L  *  L  Y  G  A  L  L  Y  N  S  I :   M  F  I  T  F  K  G  N  T  P  L  V  L  S  I  C  W  D  I  L  H  Q  F  R  L  E  V  C  C  Y  *  V  R  L  W  I  I  G  *  P  T  R  G  L  I  T  L  T  S  H  F  H  H  R :   H  S  S  F  F  H  A  L  *  Q  *  A  P  I  S  A  S  S  Y  A  L  E  D  S  L  L  F  H  S  K  L  S  V  I  *  K  Q  Y  S  F  W  Y  W  D  S  C  S  L  G  K  K  V  S  T  Y  K  W  *  L  A  C  S  *  Q  F  A  E  *  S  G  M  E  M  P  H  L  N  L  V  G  K  S  V  V  A  I  Q  S  S  M  D  Q  I  R  H  K  P  M  I  R  C  K  I  F  *  H  *  S  *  N  R  K  D  K  Q  K  N  K  K  T  E  P  F  I  V  S  *  L  Y  I  H  S  S  F  D  R  I  R  F  F  F  I  L  *  F  I  F  L  I  I  *  H  *  *  E  K  I  E  T  W  V  *  S  L  V  S  F  V  L  L  F  Y  L  I  N  N  L  *  *  V  M  S  F  F  S  L  K  E  L  L  V  D  I  K  G  V  F  G  W  K  K  N  I  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0193C03.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="49933" stop="49798"/>
                    <exon start="49299" stop="49115"/>
                    <exon start="49031" stop="48831"/>
                    <exon start="47817" stop="47656"/>
                    <exon start="46962" stop="46657"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>987</number_coding_nucleotides>
                  <number_encoded_amino_acids>329</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RQMAPSSKANKKAAGDVAAWMFNVVTSVGIIIVNKALMANYGFFFATTLTGMHFVTTTLMTIVLRWLGIIQASHLPLLDLLKFVLCANFSIVGMNISLMWNSVGFYQIAKLSMIPVSCLLEVSFDKIRYSRDTKLSIVVVLLGVAVCTVTDVSVNTKGFIAAFVAVWSTALQQYYVHYLQRKYSLSSFNLLGHTAPVQAGSLLLLGPLVDYWLTNKRIDHFDFTFSSSAFIILSCTIAIGTNLSQFICIGRFTAVSFQVIGHMKTILVLVLGFLFFGKEGLNIQVVVGMLIAVCGMIWYGNASSKPGGKERRSHSIKHGSDSSQADDKV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0193C03.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51140" stop="50896"/>
                    <exon start="50035" stop="49996"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>282</number_coding_nucleotides>
                  <number_encoded_amino_acids>94</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CVFSSTSFTSYLSKKIYLTNQSKLPSFFPNSSIFLLTFTQIHSKVCSIWLYIYIYTYSRDPVRTLRSASKTRHFHFSLLLNWWEEQIKDLEILM*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="55413" PGL_stop="62787"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="55413" e_stop="55789"/>
            <exon e_start="58682" e_stop="58762"/>
            <exon e_start="62278" e_stop="62787"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.998" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.995" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="55413" e_stop="55789" e_length="377"/>
          </exon>
          <intron i_serial="1" don_prob="0.998" acc_prob="0.996">
            <gDNA_intron_boundary i_start="55790" i_stop="58681" i_length="2892"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="58682" e_stop="58762" e_length="81"/>
          </exon>
          <intron i_serial="2" don_prob="0.995" acc_prob="0.995">
            <gDNA_intron_boundary i_start="58763" i_stop="62277" i_length="3515"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="62278" e_stop="62787" e_length="510"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55413" stop="55789"/>
              <exon start="58682" stop="58762"/>
              <exon start="62278" stop="62706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55531" stop="55789"/>
              <exon start="58682" stop="58762"/>
              <exon start="62278" stop="62787"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726221" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="55547" stop="55789"/>
              <exon start="58682" stop="58762"/>
              <exon start="62278" stop="62786"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E731816" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTTTAGTAAAATTTGAAATTATGTAATCTTCCAAACTTTTCATAATCCACGCCGACTACTATTTTTCACACCTCAAATTGCTTACAAATACAATTTCATACCAACCTCTACCGTGAAATTCGTCGAAATCTACCGAAAATTCGCCGGAGATTCTTTTGGGTTATCGAAACCGATTGAAAAAGATAAGGTTAAGGGATTAGGAGGAGGCGATTGAAGATGGGGAAGAAAAGGAAGTCTCTAGCATCGAGCCTTGATGAGGTGGATCGAACCATGTATTCGACTTTTTGTAGCGCTGCTAATTCCCTTTCTCAGCTTTATACTCAGGCTATGAACCAACAGAAACTTTCCTTCCTCTCCGGTGAACGCCATGGAATG : GAAAAACTGTATCAATGGATCTTGAGGCAACAAGAGGGTGGATCCAGAGTAACAACTGTTGACATAATGAACTACCTTCAG : TCTGAATTGGATTATAATGGAGAGGACCAGTCGATGTCTCCTAGGCCACCGCCTCAGCATTCCCAACCGTTGCACTTTGCAAACTCAGGGTTTCATGTCTCTCCAGGACCAGTTGGCGTAGCCGCTCCAGGACATGGCTTACGATCTGATCATGATCAGCAACCAAAGAACAATGTTTTCTCGAATGCTCTTTCAAGCCCTGTTCGTCGAAGCCTACAAAATTATCACATTGCTCAAGGGAGTCACTTTGCGAACAATGCTCAACCTCCAAATGCTACCAGACACAATGAAACTAACTCCCAAAACCTAAATAGAGATTCTAATGGTTATAACTCTGTCGATGCATCCATGGATATGCATTCTGATAGTCCAGGTCATGACTCTACCTATTGACCCCATAATGTTTTGGAAGCTGGCTTTTGGCATGCCAGAGTGGTCAGACTGCAAGCTCAGGTAAGTTGGCGTCTATTGTTGTGCAAGTGTTAAAGGTGTAAAAGTAGATCATGAAAT</gDNA_template>
            <first_frame> F  F  S  K  I  *  N  Y  V  I  F  Q  T  F  H  N  P  R  R  L  L  F  F  T  P  Q  I  A  Y  K  Y  N  F  I  P  T  S  T  V  K  F  V  E  I  Y  R  K  F  A  G  D  S  F  G  L  S  K  P  I  E  K  D  K  V  K  G  L  G  G  G  D  *  R  W  G  R  K  G  S  L  *  H  R  A  L  M  R  W  I  E  P  C  I  R  L  F  V  A  L  L  I  P  F  L  S  F  I  L  R  L  *  T  N  R  N  F  P  S  S  P  V  N  A  M  E  W :   K  N  C  I  N  G  S  *  G  N  K  R  V  D  P  E  *  Q  L  L  T  *  *  T  T  F  S :   L  N  W  I  I  M  E  R  T  S  R  C  L  L  G  H  R  L  S  I  P  N  R  C  T  L  Q  T  Q  G  F  M  S  L  Q  D  Q  L  A  *  P  L  Q  D  M  A  Y  D  L  I  M  I  S  N  Q  R  T  M  F  S  R  M  L  F  Q  A  L  F  V  E  A  Y  K  I  I  T  L  L  K  G  V  T  L  R  T  M  L  N  L  Q  M  L  P  D  T  M  K  L  T  P  K  T  *  I  E  I  L  M  V  I  T  L  S  M  H  P  W  I  C  I  L  I  V  Q  V  M  T  L  P  I  D  P  I  M  F  W  K  L  A  F  G  M  P  E  W  S  D  C  K  L  R  *  V  G  V  Y  C  C  A  S  V  K  G  V  K  V  D  H  E   </first_frame>
            <second_frame>  F  L  V  K  F  E  I  M  *  S  S  K  L  F  I  I  H  A  D  Y  Y  F  S  H  L  K  L  L  T  N  T  I  S  Y  Q  P  L  P  *  N  S  S  K  S  T  E  N  S  P  E  I  L  L  G  Y  R  N  R  L  K  K  I  R  L  R  D  *  E  E  A  I  E  D  G  E  E  K  E  V  S  S  I  E  P  *  *  G  G  S  N  H  V  F  D  F  L  *  R  C  *  F  P  F  S  A  L  Y  S  G  Y  E  P  T  E  T  F  L  P  L  R  *  T  P  W  N   : G  K  T  V  S  M  D  L  E  A  T  R  G  W  I  Q  S  N  N  C  *  H  N  E  L  P  S   : V  *  I  G  L  *  W  R  G  P  V  D  V  S  *  A  T  A  S  A  F  P  T  V  A  L  C  K  L  R  V  S  C  L  S  R  T  S  W  R  S  R  S  R  T  W  L  T  I  *  S  *  S  A  T  K  E  Q  C  F  L  E  C  S  F  K  P  C  S  S  K  P  T  K  L  S  H  C  S  R  E  S  L  C  E  Q  C  S  T  S  K  C  Y  Q  T  Q  *  N  *  L  P  K  P  K  *  R  F  *  W  L  *  L  C  R  C  I  H  G  Y  A  F  *  *  S  R  S  *  L  Y  L  L  T  P  *  C  F  G  S  W  L  L  A  C  Q  S  G  Q  T  A  S  S  G  K  L  A  S  I  V  V  Q  V  L  K  V  *  K  *  I  M  K  </second_frame>
            <third_frame>   F  *  *  N  L  K  L  C  N  L  P  N  F  S  *  S  T  P  T  T  I  F  H  T  S  N  C  L  Q  I  Q  F  H  T  N  L  Y  R  E  I  R  R  N  L  P  K  I  R  R  R  F  F  W  V  I  E  T  D  *  K  R  *  G  *  G  I  R  R  R  R  L  K  M  G  K  K  R  K  S  L  A  S  S  L  D  E  V  D  R  T  M  Y  S  T  F  C  S  A  A  N  S  L  S  Q  L  Y  T  Q  A  M  N  Q  Q  K  L  S  F  L  S  G  E  R  H  G  M  :  E  K  L  Y  Q  W  I  L  R  Q  Q  E  G  G  S  R  V  T  T  V  D  I  M  N  Y  L  Q  :  S  E  L  D  Y  N  G  E  D  Q  S  M  S  P  R  P  P  P  Q  H  S  Q  P  L  H  F  A  N  S  G  F  H  V  S  P  G  P  V  G  V  A  A  P  G  H  G  L  R  S  D  H  D  Q  Q  P  K  N  N  V  F  S  N  A  L  S  S  P  V  R  R  S  L  Q  N  Y  H  I  A  Q  G  S  H  F  A  N  N  A  Q  P  P  N  A  T  R  H  N  E  T  N  S  Q  N  L  N  R  D  S  N  G  Y  N  S  V  D  A  S  M  D  M  H  S  D  S  P  G  H  D  S  T  Y  *  P  H  N  V  L  E  A  G  F  W  H  A  R  V  V  R  L  Q  A  Q  V  S  W  R  L  L  L  C  K  C  *  R  C  K  S  R  S  *  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0193C03.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55607" stop="55789"/>
                    <exon start="58682" stop="58762"/>
                    <exon start="62278" stop="62670"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>654</number_coding_nucleotides>
                  <number_encoded_amino_acids>218</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GIRRRRLKMGKKRKSLASSLDEVDRTMYSTFCSAANSLSQLYTQAMNQQKLSFLSGERHGMEKLYQWILRQQEGGSRVTTVDIMNYLQSELDYNGEDQSMSPRPPPQHSQPLHFANSGFHVSPGPVGVAAPGHGLRSDHDQQPKNNVFSNALSSPVRRSLQNYHIAQGSHFANNAQPPNATRHNETNSQNLNRDSNGYNSVDASMDMHSDSPGHDSTY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0193C03.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="55431" stop="55628"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NYVIFQTFHNPRRLLFFTPQIAYKYNFIPTSTVKFVEIYRKFAGDSFGLSKPIEKDKVKGLGGGD*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="74568" PGL_stop="75221"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="74568" e_stop="75221"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.907"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.907">
            <gDNA_exon_boundary e_start="74568" e_stop="75221" e_length="654"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74568" stop="75221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354836" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74854" stop="75154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCCAATACTCATCCCATGTTAACCCGTGACAAAGCCGATATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAATTTGGGTTCTTGTACCTAAGCCCATGGGCGGCACCCAGTGGGCTTTAAATGGGTGTACGAAATTAAACACAATGCAGATGACAGTATTTCCAGAGGCTCGTTTGGTTGCTAAAGGCTACAATTAAGAGTATGGGCTTGATTACTTCGAGACATTCAGTCCTGTTATTCGGCTGGAAACCATTCGCCTAGTACTGTCACTCGCCGTGCGCAAAAAATGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCGCTTCCCTCAACATGTTTGCAAACTTCAGAAGTCTCTGTATAGGCTCAAGCAAGCCCCCCGTGCTTGGTACGCACGTCTGAAAATGTTCCTCCAGGGACTCGGCTTCACGTGTTGCGTACAAGACACGAGTTTGTTTACTCGACATTCAGCACAC</gDNA_template>
            <first_frame> P  N  T  H  P  M  L  T  R  D  K  A  D  I  F  K  P  K  T  F  Q  A  T  I  L  P  N  T  P  L  P  D  S  E  P  T  T  Y  S  V  A  S  K  N  A  Y  W  R  H  A  M  D  D  E  F  K  A  L  T  D  Q  K  I  W  V  L  V  P  K  P  M  G  G  T  Q  W  A  L  N  G  C  T  K  L  N  T  M  Q  M  T  V  F  P  E  A  R  L  V  A  K  G  Y  N  *  E  Y  G  L  D  Y  F  E  T  F  S  P  V  I  R  L  E  T  I  R  L  V  L  S  L  A  V  R  K  K  W  L  I  N  Q  L  D  V  S  N  A  F  L  H  G  M  L  D  E  T  I  Y  M  T  Q  P  P  G  Y  V  D  P  R  F  P  Q  H  V  C  K  L  Q  K  S  L  Y  R  L  K  Q  A  P  R  A  W  Y  A  R  L  K  M  F  L  Q  G  L  G  F  T  C  C  V  Q  D  T  S  L  F  T  R  H  S  A  H </first_frame>
            <second_frame>  P  I  L  I  P  C  *  P  V  T  K  P  I  S  L  N  P  K  P  F  R  L  P  Y  Y  Q  I  H  P  F  P  I  V  N  Q  Q  P  T  L  L  P  Q  K  M  L  I  G  V  M  L  W  M  T  S  L  R  L  *  L  I  R  K  F  G  F  L  Y  L  S  P  W  A  A  P  S  G  L  *  M  G  V  R  N  *  T  Q  C  R  *  Q  Y  F  Q  R  L  V  W  L  L  K  A  T  I  K  S  M  G  L  I  T  S  R  H  S  V  L  L  F  G  W  K  P  F  A  *  Y  C  H  S  P  C  A  K  N  G  S  S  I  S  W  M  F  P  M  L  F  F  M  A  C  L  M  K  L  S  T  *  R  N  H  R  A  M  L  I  P  A  S  L  N  M  F  A  N  F  R  S  L  C  I  G  S  S  K  P  P  V  L  G  T  H  V  *  K  C  S  S  R  D  S  A  S  R  V  A  Y  K  T  R  V  C  L  L  D  I  Q  H   </second_frame>
            <third_frame>   Q  Y  S  S  H  V  N  P  *  Q  S  R  Y  L  *  T  Q  N  L  S  G  Y  H  T  T  K  Y  T  P  S  R  *  *  T  N  N  L  L  C  C  L  K  K  C  L  L  A  S  C  Y  G  *  R  V  *  G  F  D  *  S  E  N  L  G  S  C  T  *  A  H  G  R  H  P  V  G  F  K  W  V  Y  E  I  K  H  N  A  D  D  S  I  S  R  G  S  F  G  C  *  R  L  Q  L  R  V  W  A  *  L  L  R  D  I  Q  S  C  Y  S  A  G  N  H  S  P  S  T  V  T  R  R  A  Q  K  M  A  H  Q  S  V  G  C  F  Q  C  F  S  S  W  H  A  *  *  N  Y  L  H  D  A  T  T  G  L  C  *  S  P  L  P  S  T  C  L  Q  T  S  E  V  S  V  *  A  Q  A  S  P  P  C  L  V  R  T  S  E  N  V  P  P  G  T  R  L  H  V  L  R  T  R  H  E  F  V  Y  S  T  F  S  T  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0193C03.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74880" stop="75221"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>342</number_coding_nucleotides>
                  <number_encoded_amino_acids>114</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EYGLDYFETFSPVIRLETIRLVLSLAVRKKWLINQLDVSNAFLHGMLDETIYMTQPPGYVDPRFPQHVCKLQKSLYRLKQAPRAWYARLKMFLQGLGFTCCVQDTSLFTRHSAH</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C12HBa0193C03.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74568" stop="74879"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PNTHPMLTRDKADIFKPKTFQATILPNTPLPDSEPTTYSVASKNAYWRHAMDDEFKALTDQKIWVLVPKPMGGTQWALNGCTKLNTMQMTVFPEARLVAKGYN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="75995" PGL_stop="75518"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="75995" e_stop="75518"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.918"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.918">
            <gDNA_exon_boundary e_start="75995" e_stop="75518" e_length="478"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75995" stop="75759"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E391780" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75994" stop="75518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246710" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCACGAACCGACACATAGAATTAGTGGATCGGAGTGTCACGTACCGACACAAGAGGACTAATGAATATGAGGGAGCGGAGTGTCACGTACCGACACAAGAGAAATAAAGATAATGAATCTTGAAAGATGTTAATATACTCAATCTAATGAACATAATTCCCAATAAGTATGGTATTGAGGCTTGAGTCCTCATGTGTGAACTTGACGGTAATTGATTATGACATAGTACTTGCTGTTGCTACATGTTGAGTATCATAGTTGATTTTATGATATTACTTGGTATATATTGATTTCTATTTTGAGTTGGCCGATGATATCTACTCAGTAACCGTGTTTTGTACTGACCCCTACTTTTATGTTTTCCTCTTGTTTAATTGTGGAGTGCAGCAAACGTGCCGTCATCTTCGACTTAACAGTAACTCTAGCCAGTCTTCATTACTCCGGATATAAGGGTGAGCTAATGCTTCTAGCTTGGACT</gDNA_template>
            <first_frame> S  R  T  D  T  *  N  *  W  I  G  V  S  R  T  D  T  R  G  L  M  N  M  R  E  R  S  V  T  Y  R  H  K  R  N  K  D  N  E  S  *  K  M  L  I  Y  S  I  *  *  T  *  F  P  I  S  M  V  L  R  L  E  S  S  C  V  N  L  T  V  I  D  Y  D  I  V  L  A  V  A  T  C  *  V  S  *  L  I  L  *  Y  Y  L  V  Y  I  D  F  Y  F  E  L  A  D  D  I  Y  S  V  T  V  F  C  T  D  P  Y  F  Y  V  F  L  L  F  N  C  G  V  Q  Q  T  C  R  H  L  R  L  N  S  N  S  S  Q  S  S  L  L  R  I  *  G  *  A  N  A  S  S  L  D  </first_frame>
            <second_frame>  H  E  P  T  H  R  I  S  G  S  E  C  H  V  P  T  Q  E  D  *  *  I  *  G  S  G  V  S  R  T  D  T  R  E  I  K  I  M  N  L  E  R  C  *  Y  T  Q  S  N  E  H  N  S  Q  *  V  W  Y  *  G  L  S  P  H  V  *  T  *  R  *  L  I  M  T  *  Y  L  L  L  L  H  V  E  Y  H  S  *  F  Y  D  I  T  W  Y  I  L  I  S  I  L  S  W  P  M  I  S  T  Q  *  P  C  F  V  L  T  P  T  F  M  F  S  S  C  L  I  V  E  C  S  K  R  A  V  I  F  D  L  T  V  T  L  A  S  L  H  Y  S  G  Y  K  G  E  L  M  L  L  A  W  T </second_frame>
            <third_frame>   T  N  R  H  I  E  L  V  D  R  S  V  T  Y  R  H  K  R  T  N  E  Y  E  G  A  E  C  H  V  P  T  Q  E  K  *  R  *  *  I  L  K  D  V  N  I  L  N  L  M  N  I  I  P  N  K  Y  G  I  E  A  *  V  L  M  C  E  L  D  G  N  *  L  *  H  S  T  C  C  C  Y  M  L  S  I  I  V  D  F  M  I  L  L  G  I  Y  *  F  L  F  *  V  G  R  *  Y  L  L  S  N  R  V  L  Y  *  P  L  L  L  C  F  P  L  V  *  L  W  S  A  A  N  V  P  S  S  S  T  *  Q  *  L  *  P  V  F  I  T  P  D  I  R  V  S  *  C  F  *  L  G   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0193C03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="76599" PGL_stop="76051"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76599" e_stop="76283"/>
            <exon e_start="76138" e_stop="76051"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.934"/>
          <exon-only e_score="0.875"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="76599" e_stop="76283" e_length="317"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="76282" i_stop="76139" i_length="144"/>
          </intron>
          <exon e_serial="2" e_score="0.875">
            <gDNA_exon_boundary e_start="76138" e_stop="76051" e_length="88"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76599" stop="76283"/>
              <exon start="76138" stop="76051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357559" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATCTTCGGTGGAGGTAGGTTATGATTTCTCTTACGATATCCGTAGTAAACTCTTAATAGCGAATGATATGTATTGATAATATTGTAAACCCTGCTATGTGCTTAATTGTATGCTTGCATGAATGTAATTATATAATTGTGATTATATAAGCATGATGAAGTTATTGAATCCCAAATCTTGAAAAACCCTAATTCTCTTTGTTAATGATGAGGCCTTGGTATAAAAGAAGGCTTGATGAACTAAAATAATGAGATTGATGATGCCTTGGTAAGAAAGAAGGCTTGATGAATTGATAGAAGGAGATTAGGGGATCGG : GTGTCACGAACCGATACGTAGAATTAGTGGATCGGGTGTCACGAACCGACACATAGAATTAGTGGATTGGGTGTCACGAACCGACACA</gDNA_template>
            <first_frame> K  S  S  V  E  V  G  Y  D  F  S  Y  D  I  R  S  K  L  L  I  A  N  D  M  Y  *  *  Y  C  K  P  C  Y  V  L  N  C  M  L  A  *  M  *  L  Y  N  C  D  Y  I  S  M  M  K  L  L  N  P  K  S  *  K  T  L  I  L  F  V  N  D  E  A  L  V  *  K  K  A  *  *  T  K  I  M  R  L  M  M  P  W  *  E  R  R  L  D  E  L  I  E  G  D  *  G  I  G :   C  H  E  P  I  R  R  I  S  G  S  G  V  T  N  R  H  I  E  L  V  D  W  V  S  R  T  D  T </first_frame>
            <second_frame>  N  L  R  W  R  *  V  M  I  S  L  T  I  S  V  V  N  S  *  *  R  M  I  C  I  D  N  I  V  N  P  A  M  C  L  I  V  C  L  H  E  C  N  Y  I  I  V  I  I  *  A  *  *  S  Y  *  I  P  N  L  E  K  P  *  F  S  L  L  M  M  R  P  W  Y  K  R  R  L  D  E  L  K  *  *  D  *  *  C  L  G  K  K  E  G  L  M  N  *  *  K  E  I  R  G  S   : G  V  T  N  R  Y  V  E  L  V  D  R  V  S  R  T  D  T  *  N  *  W  I  G  C  H  E  P  T   </second_frame>
            <third_frame>   I  F  G  G  G  R  L  *  F  L  L  R  Y  P  *  *  T  L  N  S  E  *  Y  V  L  I  I  L  *  T  L  L  C  A  *  L  Y  A  C  M  N  V  I  I  *  L  *  L  Y  K  H  D  E  V  I  E  S  Q  I  L  K  N  P  N  S  L  C  *  *  *  G  L  G  I  K  E  G  L  M  N  *  N  N  E  I  D  D  A  L  V  R  K  K  A  *  *  I  D  R  R  R  L  G  D  R  :  V  S  R  T  D  T  *  N  *  W  I  G  C  H  E  P  T  H  R  I  S  G  L  G  V  T  N  R  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0193C03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="77979" PGL_stop="78155"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="77979" e_stop="78155"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.944"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="77979" e_stop="78155" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="77979" stop="78155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGATCCATATTGATGCTTGAGTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAAGAAGTTATCCCAATGGCCACCAAATTCTATCACACATGCACGAAGCATATCCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  S  I  L  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  W  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  R  S  D  *  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  D  P  Y  *  C  L  S  D  S  Y  Y  C  M  K  T  P  L  R  V  R  S  Y  P  N  G  H  Q  I  L  S  H  M  H  E  A  Y  P  P  T  L  E  S  F  A  Q  T  D  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  I  H  I  D  A  *  V  I  A  I  I  V  *  K  L  R  *  G  *  E  V  I  P  M  A  T  K  F  Y  H  T  C  T  K  H  I  L  Q  H  L  N  R  S  L  R  L  T  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C12HBa0193C03.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 177 chains have been computed
$ 
$ memory statistics:
$ 118496 bytes spliced alignments in total
$ 56 spliced alignments have been stored
$ 2116 bytes was the average size of a spliced alignment
$ 16736 bytes predicted gene locations in total
$ 9 predicted gene locations have been stored
$ 1859 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 244 backtrace matrices have been allocated
$ 
$ date finished: 2008-02-20 12:36:52
-->
