##gff-version 3
##sequence-region C12HBa0040O03.2 1 68301
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match	41630	45859	0.996	-	0	ID=SGN-E353288_alignment_1;Target=SGN-E353288 1 790 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	45616	45859	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_1;Target=SGN-E353288 1 244 +;Parent=SGN-E353288_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	44572	44720	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_2;Target=SGN-E353288 245 393 +;Parent=SGN-E353288_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	41630	42026	0.992	-	0	ID=GTH_SGN_E_tom_potato_match_part_3;Target=SGN-E353288 394 790 +;Parent=SGN-E353288_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match	41663	45859	0.999	-	0	ID=SGN-E349532_alignment_1;Target=SGN-E349532 1 757 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	45616	45859	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_4;Target=SGN-E349532 1 244 +;Parent=SGN-E349532_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	44572	44720	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_5;Target=SGN-E349532 245 393 +;Parent=SGN-E349532_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	41663	42026	0.997	-	0	ID=GTH_SGN_E_tom_potato_match_part_6;Target=SGN-E349532 394 757 +;Parent=SGN-E349532_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match	41680	45672	0.998	-	0	ID=SGN-E298564_alignment_1;Target=SGN-E298564 1 553 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	45616	45672	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_7;Target=SGN-E298564 1 57 +;Parent=SGN-E298564_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	44572	44720	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_8;Target=SGN-E298564 58 206 +;Parent=SGN-E298564_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	41680	42026	0.997	-	0	ID=GTH_SGN_E_tom_potato_match_part_9;Target=SGN-E298564 207 553 +;Parent=SGN-E298564_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match	41715	45988	1.000	-	0	ID=SGN-E552493_alignment_1;Target=SGN-E552493 1 834 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	45616	45988	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_10;Target=SGN-E552493 1 373 +;Parent=SGN-E552493_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	44572	44720	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_11;Target=SGN-E552493 374 522 +;Parent=SGN-E552493_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	41715	42026	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_12;Target=SGN-E552493 523 834 +;Parent=SGN-E552493_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match	41715	45915	1.000	-	0	ID=SGN-E718809_alignment_1;Target=SGN-E718809 15 775 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	45616	45915	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_13;Target=SGN-E718809 15 314 +;Parent=SGN-E718809_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	44572	44720	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_14;Target=SGN-E718809 315 463 +;Parent=SGN-E718809_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	41715	42026	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_15;Target=SGN-E718809 464 775 +;Parent=SGN-E718809_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match	41728	45906	0.997	-	0	ID=SGN-E713546_alignment_1;Target=SGN-E713546 1 739 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	45616	45906	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_16;Target=SGN-E713546 1 291 +;Parent=SGN-E713546_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	44572	44720	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_17;Target=SGN-E713546 292 440 +;Parent=SGN-E713546_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	41728	42026	0.993	-	0	ID=GTH_SGN_E_tom_potato_match_part_18;Target=SGN-E713546 441 739 +;Parent=SGN-E713546_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match	41728	41973	1.000	-	0	ID=SGN-E309653_alignment_1;Target=SGN-E309653 1 246 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	41728	41973	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_19;Target=SGN-E309653 1 246 +;Parent=SGN-E309653_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match	41737	45988	1.000	-	0	ID=SGN-E555191_alignment_1;Target=SGN-E555191 1 812 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	45616	45988	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_20;Target=SGN-E555191 1 373 +;Parent=SGN-E555191_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	44572	44720	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_21;Target=SGN-E555191 374 522 +;Parent=SGN-E555191_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	41737	42026	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_22;Target=SGN-E555191 523 812 +;Parent=SGN-E555191_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match	41740	45820	0.947	-	0	ID=SGN-E433991_alignment_1;Target=SGN-E433991 33 664 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	45616	45820	0.946	-	0	ID=GTH_SGN_E_tom_potato_match_part_23;Target=SGN-E433991 33 237 +;Parent=SGN-E433991_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	44572	44720	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_24;Target=SGN-E433991 238 386 +;Parent=SGN-E433991_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	41740	42026	0.920	-	0	ID=GTH_SGN_E_tom_potato_match_part_25;Target=SGN-E433991 387 664 +;Parent=SGN-E433991_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match	41757	45903	0.986	-	0	ID=SGN-E343641_alignment_1;Target=SGN-E343641 1 704 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	45616	45903	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_26;Target=SGN-E343641 1 288 +;Parent=SGN-E343641_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	44572	44720	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_27;Target=SGN-E343641 289 437 +;Parent=SGN-E343641_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	41757	42026	0.963	-	0	ID=GTH_SGN_E_tom_potato_match_part_28;Target=SGN-E343641 438 704 +;Parent=SGN-E343641_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match	41772	45859	0.995	-	0	ID=SGN-E354746_alignment_1;Target=SGN-E354746 1 648 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	45616	45859	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_29;Target=SGN-E354746 1 244 +;Parent=SGN-E354746_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	44572	44720	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_30;Target=SGN-E354746 245 393 +;Parent=SGN-E354746_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	41772	42026	0.988	-	0	ID=GTH_SGN_E_tom_potato_match_part_31;Target=SGN-E354746 394 648 +;Parent=SGN-E354746_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match	41780	45859	0.994	-	0	ID=SGN-E352628_alignment_1;Target=SGN-E352628 1 640 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	45616	45859	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_32;Target=SGN-E352628 1 244 +;Parent=SGN-E352628_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	44572	44720	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_33;Target=SGN-E352628 245 393 +;Parent=SGN-E352628_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	41780	42026	0.984	-	0	ID=GTH_SGN_E_tom_potato_match_part_34;Target=SGN-E352628 394 640 +;Parent=SGN-E352628_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match	41841	45846	0.938	-	0	ID=SGN-E467059_alignment_1;Target=SGN-E467059 1 566 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	45616	45846	0.918	-	0	ID=GTH_SGN_E_tom_potato_match_part_35;Target=SGN-E467059 1 231 +;Parent=SGN-E467059_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	44572	44720	0.987	-	0	ID=GTH_SGN_E_tom_potato_match_part_36;Target=SGN-E467059 232 380 +;Parent=SGN-E467059_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	41841	42026	0.925	-	0	ID=GTH_SGN_E_tom_potato_match_part_37;Target=SGN-E467059 381 566 +;Parent=SGN-E467059_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match	41845	45988	1.000	-	0	ID=SGN-E556002_alignment_1;Target=SGN-E556002 1 704 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	45616	45988	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_38;Target=SGN-E556002 1 373 +;Parent=SGN-E556002_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	44572	44720	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_39;Target=SGN-E556002 374 522 +;Parent=SGN-E556002_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	41845	42026	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_40;Target=SGN-E556002 523 704 +;Parent=SGN-E556002_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match	41866	45877	0.998	-	0	ID=SGN-E721340_alignment_1;Target=SGN-E721340 1 572 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	45616	45877	0.996	-	0	ID=GTH_SGN_E_tom_potato_match_part_41;Target=SGN-E721340 1 262 +;Parent=SGN-E721340_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	44572	44720	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_42;Target=SGN-E721340 263 411 +;Parent=SGN-E721340_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	41866	42026	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_43;Target=SGN-E721340 412 572 +;Parent=SGN-E721340_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match	41879	45977	0.988	-	0	ID=SGN-E365099_alignment_1;Target=SGN-E365099 1 657 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	45616	45977	0.989	-	0	ID=GTH_SGN_E_tom_potato_match_part_44;Target=SGN-E365099 1 360 +;Parent=SGN-E365099_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	44572	44720	0.993	-	0	ID=GTH_SGN_E_tom_potato_match_part_45;Target=SGN-E365099 361 509 +;Parent=SGN-E365099_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	41879	42026	0.980	-	0	ID=GTH_SGN_E_tom_potato_match_part_46;Target=SGN-E365099 510 657 +;Parent=SGN-E365099_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match	41925	45820	0.958	-	0	ID=SGN-E404673_alignment_1;Target=SGN-E404673 35 490 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	45616	45820	0.932	-	0	ID=GTH_SGN_E_tom_potato_match_part_47;Target=SGN-E404673 35 239 +;Parent=SGN-E404673_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	44572	44720	0.987	-	0	ID=GTH_SGN_E_tom_potato_match_part_48;Target=SGN-E404673 240 388 +;Parent=SGN-E404673_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	41925	42026	0.971	-	0	ID=GTH_SGN_E_tom_potato_match_part_49;Target=SGN-E404673 389 490 +;Parent=SGN-E404673_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match	41927	45851	0.994	-	0	ID=SGN-E287441_alignment_1;Target=SGN-E287441 1 486 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	45616	45851	0.987	-	0	ID=GTH_SGN_E_tom_potato_match_part_50;Target=SGN-E287441 1 237 +;Parent=SGN-E287441_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	44572	44720	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_51;Target=SGN-E287441 238 386 +;Parent=SGN-E287441_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	41927	42026	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_52;Target=SGN-E287441 387 486 +;Parent=SGN-E287441_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match	41953	45970	0.990	-	0	ID=SGN-E362468_alignment_1;Target=SGN-E362468 1 576 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	45616	45970	0.989	-	0	ID=GTH_SGN_E_tom_potato_match_part_53;Target=SGN-E362468 1 353 +;Parent=SGN-E362468_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	44572	44720	0.993	-	0	ID=GTH_SGN_E_tom_potato_match_part_54;Target=SGN-E362468 354 502 +;Parent=SGN-E362468_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	41953	42026	0.986	-	0	ID=GTH_SGN_E_tom_potato_match_part_55;Target=SGN-E362468 503 576 +;Parent=SGN-E362468_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match	41975	45907	0.982	-	0	ID=SGN-E319277_alignment_1;Target=SGN-E319277 1 493 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	45616	45907	0.969	-	0	ID=GTH_SGN_E_tom_potato_match_part_56;Target=SGN-E319277 1 292 +;Parent=SGN-E319277_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	44572	44720	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_57;Target=SGN-E319277 293 441 +;Parent=SGN-E319277_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	41975	42026	1.000	-	0	ID=GTH_SGN_E_tom_potato_match_part_58;Target=SGN-E319277 442 493 +;Parent=SGN-E319277_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match	44675	45907	0.959	-	0	ID=SGN-E319276_alignment_1;Target=SGN-E319276 1 338 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	45616	45907	0.959	-	0	ID=GTH_SGN_E_tom_potato_match_part_59;Target=SGN-E319276 1 292 +;Parent=SGN-E319276_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	44675	44720	0.978	-	0	ID=GTH_SGN_E_tom_potato_match_part_60;Target=SGN-E319276 293 338 +;Parent=SGN-E319276_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match	47018	50350	0.964	-	0	ID=SGN-E452044_alignment_1;Target=SGN-E452044 1 731 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	50266	50350	0.976	-	0	ID=GTH_SGN_E_tom_potato_match_part_61;Target=SGN-E452044 1 85 +;Parent=SGN-E452044_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	47018	47663	0.963	-	0	ID=GTH_SGN_E_tom_potato_match_part_62;Target=SGN-E452044 86 731 +;Parent=SGN-E452044_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match	48391	48961	0.995	-	0	ID=SGN-E315256_alignment_1;Target=SGN-E315256 1 571 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	match_part	48391	48961	0.995	-	0	ID=GTH_SGN_E_tom_potato_match_part_63;Target=SGN-E315256 1 571 +;Parent=SGN-E315256_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	gene	41630	45988	.	-	0	ID=GTH_SGN_E_tom_potato_gene_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	mRNA	41630	45988	.	-	0	ID=GTH_SGN_E_tom_potato_gene_1_AGS_1;Parent=GTH_SGN_E_tom_potato_gene_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	exon	45616	45988	1.000	-	0	ID=GTH_SGN_E_tom_potato_exon_1;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	exon	44572	44720	1.000	-	0	ID=GTH_SGN_E_tom_potato_exon_2;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	exon	41630	42026	0.992	-	0	ID=GTH_SGN_E_tom_potato_exon_3;Parent=GTH_SGN_E_tom_potato_gene_1_AGS_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	gene	47018	50350	.	-	0	ID=GTH_SGN_E_tom_potato_gene_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	mRNA	47018	50350	.	-	0	ID=GTH_SGN_E_tom_potato_gene_2_AGS_1;Parent=GTH_SGN_E_tom_potato_gene_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	exon	50266	50350	0.976	-	0	ID=GTH_SGN_E_tom_potato_exon_4;Parent=GTH_SGN_E_tom_potato_gene_2_AGS_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	exon	47018	47663	0.963	-	0	ID=GTH_SGN_E_tom_potato_exon_5;Parent=GTH_SGN_E_tom_potato_gene_2_AGS_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	mRNA	48391	48961	.	-	0	ID=GTH_SGN_E_tom_potato_gene_2_AGS_2;Parent=GTH_SGN_E_tom_potato_gene_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato_potato	exon	48391	48961	0.995	-	0	ID=GTH_SGN_E_tom_potato_exon_6;Parent=GTH_SGN_E_tom_potato_gene_2_AGS_2
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	8642	8882	933	+	0	ID=Unknown00025_alignment_1;Target=Unknown00025 246 470 +
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	9275	9506	1112	-	0	ID=TLP1_alignment_1;Target=TLP1 1 247 -
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	15510	15789	781	+	0	ID=Unknown00043_alignment_1;Target=Unknown00043 5547 5838 +
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	19542	19931	413	+	0	ID=Unknown00057_alignment_1;Target=Unknown00057 471 872 +
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	20321	20452	458	+	0	ID=TS2_alignment_1;Target=TS2 47 179 +
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	22071	22214	605	+	0	ID=Gypsy00073_alignment_1;Target=Gypsy00073 270 379 +
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	24659	24869	407	-	0	ID=Copia00008_alignment_1;Target=Copia00008 4914 5110 -
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	27220	27749	3381	+	0	ID=Copia00109_alignment_1;Target=Copia00109 6 558 +
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	27750	27881	716	+	0	ID=Unknown00023_alignment_1;Target=Unknown00023 801 925 +
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	27880	27951	537	-	0	ID=Copia00046_alignment_1;Target=Copia00046 4748 4819 -
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	27958	28033	479	+	0	ID=Unknown00023_alignment_2;Target=Unknown00023 1102 1177 +
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	29795	30124	834	-	0	ID=Unknown00046_alignment_1;Target=Unknown00046 2529 2856 -
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	29822	30108	1642	+	0	ID=TLP2_alignment_1;Target=TLP2 7 306 +
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	30260	30305	236	-	0	ID=SONATA2_alignment_1;Target=SONATA2 124 168 -
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	30821	31427	4244	+	0	ID=Copia00163_alignment_1;Target=Copia00163 5 644 +
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	31480	31510	253	-	0	ID=Copia00043_alignment_1;Target=Copia00043 7838 7868 -
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	31485	31547	227	+	0	ID=Copia00158_alignment_1;Target=Copia00158 56 117 +
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	33131	33357	565	+	0	ID=Copia00060_alignment_1;Target=Copia00060 3562 5874 +
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	33848	35313	10956	+	0	ID=Copia00022_alignment_1;Target=Copia00022 5940 7408 +
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	35648	35857	1396	-	0	ID=Unknown00025_alignment_2;Target=Unknown00025 1014 1221 -
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	37912	37976	336	-	0	ID=Copia00105_alignment_1;Target=Copia00105 7473 7537 -
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	37926	37988	343	+	0	ID=Copia00181_alignment_1;Target=Copia00181 1817 1879 +
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	38870	39014	296	+	0	ID=SINE_SO_alignment_1;Target=SINE_SO 16 155 +
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	41285	41517	1309	+	0	ID=Unknown00034_alignment_1;Target=Unknown00034 3784 4018 +
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	42946	43318	1920	+	0	ID=Copia00172_alignment_1;Target=Copia00172 1100 1485 +
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	46204	46426	759	+	0	ID=TLP1_alignment_2;Target=TLP1 70 294 +
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	49460	49734	430	+	0	ID=TS2_alignment_2;Target=TS2 3 284 +
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	51682	51833	440	-	0	ID=Copia00151_alignment_1;Target=Copia00151 8226 8379 -
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	52002	52017	578	-	0	ID=Unknown00019_alignment_1;Target=Unknown00019 697 716 -
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	52018	52166	650	+	0	ID=Copia00110_alignment_1;Target=Copia00110 13161 13311 +
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	52167	52593	578	-	0	ID=Unknown00019_alignment_2;Target=Unknown00019 147 696 -
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	52322	52599	1124	+	0	ID=Copia00110_alignment_2;Target=Copia00110 13281 13567 +
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	52358	52629	737	+	0	ID=Gypsy00073_alignment_2;Target=Gypsy00073 934 1201 +
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	52633	52810	722	+	0	ID=Gypsy00043_alignment_1;Target=Gypsy00043 1066 1257 +
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	52941	53003	232	-	0	ID=Unknown00019_alignment_3;Target=Unknown00019 28 91 -
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	56608	56773	355	-	0	ID=Unknown00046_alignment_2;Target=Unknown00046 404 571 -
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	56677	56808	568	+	0	ID=Unknown00034_alignment_2;Target=Unknown00034 3704 3837 +
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	57469	57600	532	-	0	ID=Unknown00034_alignment_3;Target=Unknown00034 3704 3837 -
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	60501	60788	1205	-	0	ID=Copia00110_alignment_3;Target=Copia00110 13160 13457 -
C12HBa0040O03.2	RepeatMasker	nucleotide_motif	63687	63725	289	+	0	ID=Copia00143_alignment_1;Target=Copia00143 77 115 +
C12HBa0040O03.2	BLAST_tomato_bacs	match	32069	33110	1253	+	0	ID=C00HBa0303A06.2_rev_alignment_1;blast_gaps=9;Target=clone-C00HBa0303A06.2 63950 64989 -;blast_match_length=1041;blast_percent_identity=91.12;blast_mismatches=81;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bacs	match	66277	67361	1080	+	0	ID=C02HBa0072A04.2_fwd_alignment_1;blast_gaps=8;Target=clone-C02HBa0072A04.2 30088 31158 +;blast_match_length=1084;blast_percent_identity=88.04;blast_mismatches=112;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bacs	match	66277	67361	1275	+	0	ID=C02HBa0116F10.1_rev_alignment_1;blast_gaps=4;Target=clone-C02HBa0116F10.1 88084 89168 -;blast_match_length=1084;blast_percent_identity=90.16;blast_mismatches=103;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bacs	match	66276	67357	1312	+	0	ID=C04HBa0036C23.1_fwd_alignment_1;blast_gaps=3;Target=clone-C04HBa0036C23.1 16188 17266 +;blast_match_length=1081;blast_percent_identity=90.57;blast_mismatches=99;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bacs	match	66342	67361	1207	+	0	ID=C04SLm0028J22.1_fwd_alignment_1;blast_gaps=4;Target=clone-C04SLm0028J22.1 51473 52490 +;blast_match_length=1019;blast_percent_identity=90.30;blast_mismatches=95;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bacs	match	66276	67361	1403	+	0	ID=C06SLe0039G15.1_rev_alignment_1;blast_gaps=4;Target=clone-C06SLe0039G15.1 64404 65489 -;blast_match_length=1085;blast_percent_identity=91.64;blast_mismatches=87;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bacs	match	66276	67361	1403	+	0	ID=C06SLe0045F21.1_rev_alignment_1;blast_gaps=4;Target=clone-C06SLe0045F21.1 29013 30098 -;blast_match_length=1085;blast_percent_identity=91.64;blast_mismatches=87;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bacs	match	30748	33113	3713	+	0	ID=C06SLm0099A03.1_fwd_alignment_1;blast_gaps=9;Target=clone-C06SLm0099A03.1 9850 12221 +;blast_match_length=2365;blast_percent_identity=96.04;blast_mismatches=84;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bacs	match	33133	34557	2518	+	0	ID=C06SLm0099A03.1_fwd_alignment_2;blast_gaps=1;Target=clone-C06SLm0099A03.1 12244 13669 +;blast_match_length=1424;blast_percent_identity=97.34;blast_mismatches=37;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bacs	match	33133	34557	2668	+	0	ID=C07HBa0027P02.1_rev_alignment_1;blast_gaps=1;Target=clone-C07HBa0027P02.1 4690 6115 -;blast_match_length=1424;blast_percent_identity=98.67;blast_mismatches=18;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bacs	match	30789	33116	3546	+	0	ID=C07SLm0034N13.2_fwd_alignment_1;blast_gaps=10;Target=clone-C07SLm0034N13.2 28997 31312 +;blast_match_length=2327;blast_percent_identity=95.45;blast_mismatches=86;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bacs	match	33133	34553	2438	+	0	ID=C07SLm0034N13.2_fwd_alignment_2;blast_gaps=2;Target=clone-C07SLm0034N13.2 31331 32743 +;blast_match_length=1420;blast_percent_identity=96.62;blast_mismatches=38;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bacs	match	66317	67362	1320	+	0	ID=C07SLm0140K05.1_rev_alignment_1;blast_gaps=7;Target=clone-C07SLm0140K05.1 30593 31636 -;blast_match_length=1045;blast_percent_identity=91.52;blast_mismatches=81;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bacs	match	33133	34557	2516	+	0	ID=C08SLm0118O22.1_fwd_alignment_1;blast_gaps=0;Target=clone-C08SLm0118O22.1 73828 75252 +;blast_match_length=1424;blast_percent_identity=97.26;blast_mismatches=39;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bacs	match	32092	33116	1380	+	0	ID=C11SLm0052K14.1_fwd_alignment_1;blast_gaps=5;Target=clone-C11SLm0052K14.1 58638 59663 +;blast_match_length=1024;blast_percent_identity=92.80;blast_mismatches=69;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bacs	match	29263	30344	2145	+	0	ID=C12HBa0165B12.1_rev_alignment_1;blast_gaps=0;Target=clone-C12HBa0165B12.1 15362 16443 -;blast_match_length=1081;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bacs	match	3772	15880	2.345e+04	+	0	ID=C12HBa0165B12.1_rev_alignment_2;blast_gaps=0;Target=clone-C12HBa0165B12.1 29826 41934 -;blast_match_length=12108;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bacs	match	33133	34557	2825	+	0	ID=C12HBa0165B12.1_rev_alignment_3;blast_gaps=0;Target=clone-C12HBa0165B12.1 10692 12116 -;blast_match_length=1424;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bacs	match	35414	37140	3132	+	0	ID=C12HBa0165B12.1_rev_alignment_4;blast_gaps=0;Target=clone-C12HBa0165B12.1 7652 9378 -;blast_match_length=1726;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bacs	match	19377	21328	3828	+	0	ID=C12HBa0165B12.1_rev_alignment_5;blast_gaps=0;Target=clone-C12HBa0165B12.1 24378 26329 -;blast_match_length=1951;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bacs	match	15894	18216	4563	+	0	ID=C12HBa0165B12.1_rev_alignment_6;blast_gaps=0;Target=clone-C12HBa0165B12.1 27489 29811 -;blast_match_length=2322;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bacs	match	30621	33117	4748	+	0	ID=C12HBa0165B12.1_rev_alignment_7;blast_gaps=0;Target=clone-C12HBa0165B12.1 12132 14628 -;blast_match_length=2496;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bacs	match	1	3064	5901	+	0	ID=C12HBa0165B12.1_rev_alignment_8;blast_gaps=0;Target=clone-C12HBa0165B12.1 42643 45706 -;blast_match_length=3063;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bacs	match	25035	28568	6875	+	0	ID=C12HBa0165B12.1_rev_alignment_9;blast_gaps=0;Target=clone-C12HBa0165B12.1 17138 20671 -;blast_match_length=3533;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bacs	match	41015	44789	7240	+	0	ID=C12HBa0165B12.1_rev_alignment_10;blast_gaps=0;Target=clone-C12HBa0165B12.1 1 3775 -;blast_match_length=3774;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C12HBa0040O03.2	Contigs	contig	1	30520	.	.	0	ID=contig1_1;length=30520
C12HBa0040O03.2	Contigs	contig	30621	35313	.	.	0	ID=contig2_1;length=4693
C12HBa0040O03.2	Contigs	contig	35414	68301	.	.	0	ID=contig3_1;length=32888
C12HBa0040O03.2	BLAST_tomato_bac_ends	clone	50	68184	995	.	0	is_problematic=0;ID=C12HBa0040O03.2-LE_HBa0040O03_1
C12HBa0040O03.2	BLAST_tomato_bac_ends	clone_end	50	796	1475	+	0	ID=C12HBa0040O03.2-LE_HBa0040O03_SP6_8740_1;blast_gaps=0;Target=LE_HBa0040O03_SP6_8740 1 747 +;Parent=C12HBa0040O03.2-LE_HBa0040O03_1;is_problematic=0;blast_percent_identity=99.87;blast_mismatches=1;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bac_ends	clone_start	67925	68184	515	-	0	ID=C12HBa0040O03.2-LE_HBa0040O03_T7_8741_1;blast_gaps=0;Target=LE_HBa0040O03_T7_8741 117 376 +;Parent=C12HBa0040O03.2-LE_HBa0040O03_1;is_problematic=0;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=9e-143
C12HBa0040O03.2	BLAST_tomato_bac_ends	clone	50	67793	989.5	.	0	is_problematic=0;ID=C12HBa0040O03.2-LE_HBa0040O03_2
C12HBa0040O03.2	BLAST_tomato_bac_ends	clone_end	50	796	1475	+	0	ID=C12HBa0040O03.2-LE_HBa0040O03_SP6_8740_2;blast_gaps=0;Target=LE_HBa0040O03_SP6_8740 1 747 +;Parent=C12HBa0040O03.2-LE_HBa0040O03_2;is_problematic=0;blast_percent_identity=99.87;blast_mismatches=1;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bac_ends	clone_start	67506	67793	504	-	0	ID=C12HBa0040O03.2-LE_HBa0040O03_T7_8741_2;blast_gaps=1;Target=LE_HBa0040O03_T7_8741 508 794 +;Parent=C12HBa0040O03.2-LE_HBa0040O03_2;is_problematic=0;blast_percent_identity=98.96;blast_mismatches=2;blast_evalue=3e-139
C12HBa0040O03.2	BLAST_tomato_bac_ends	clone_start	2665	3064	751	-	0	ID=C12HBa0040O03.2-SL_FOS0151M16_pIBF_516438_1;blast_gaps=0;Target=SL_FOS0151M16_pIBF_516438 230 629 +;is_problematic=0;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bac_ends	clone_start	3125	3292	333	-	0	ID=C12HBa0040O03.2-SL_FOS0151M16_pIBF_516438_2;blast_gaps=0;Target=SL_FOS0151M16_pIBF_516438 2 169 +;is_problematic=0;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=7e-88
C12HBa0040O03.2	BLAST_tomato_bac_ends	clone_start	20720	21328	1166	-	0	ID=C12HBa0040O03.2-SL_FOS0189M04_pIBF_545598_1;blast_gaps=0;Target=SL_FOS0189M04_pIBF_545598 126 734 +;is_problematic=0;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bac_ends	clone_end	26937	27631	1378	-	0	ID=C12HBa0040O03.2-SL_FOS0134B12_pIBR_495770_1;blast_gaps=0;Target=SL_FOS0134B12_pIBR_495770 2 696 +;is_problematic=0;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bac_ends	clone_end	27807	28337	1053	-	0	ID=C12HBa0040O03.2-SL_FOS0169I11_pIBR_530061_1;blast_gaps=0;Target=SL_FOS0169I11_pIBR_530061 3 533 +;is_problematic=0;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bac_ends	clone_start	28373	28568	389	-	0	ID=C12HBa0040O03.2-SL_FOS0264P12_pIBF_603358_1;blast_gaps=0;Target=SL_FOS0264P12_pIBF_603358 380 575 +;is_problematic=0;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=1e-104
C12HBa0040O03.2	BLAST_tomato_bac_ends	clone_start	28632	28946	624	-	0	ID=C12HBa0040O03.2-SL_FOS0264P12_pIBF_603358_2;blast_gaps=0;Target=SL_FOS0264P12_pIBF_603358 2 316 +;is_problematic=0;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=1e-175
C12HBa0040O03.2	BLAST_tomato_bac_ends	clone_end	31017	31170	281	-	0	ID=C12HBa0040O03.2-LE_HBa0108F09_SP6_95872_1;blast_gaps=0;Target=LE_HBa0108F09_SP6_95872 332 485 +;is_problematic=0;blast_percent_identity=98.05;blast_mismatches=3;blast_evalue=2e-72
C12HBa0040O03.2	BLAST_tomato_bac_ends	clone_start	31336	31871	1063	-	0	ID=C12HBa0040O03.2-SL_FOS0183N12_pIBF_541054_1;blast_gaps=0;Target=SL_FOS0183N12_pIBF_541054 1 536 +;is_problematic=0;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bac_ends	clone_start	33133	33720	1094	-	0	ID=C12HBa0040O03.2-LE_HBa0031G12_T7_139692_1;blast_gaps=0;Target=LE_HBa0031G12_T7_139692 1 588 +;is_problematic=0;blast_percent_identity=98.47;blast_mismatches=9;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bac_ends	clone_end	33133	33450	591	+	0	ID=C12HBa0040O03.2-SL_FOS0250L17_pIBR_592425_1;blast_gaps=0;Target=SL_FOS0250L17_pIBR_592425 31 348 +;is_problematic=0;blast_percent_identity=98.43;blast_mismatches=5;blast_evalue=2e-165
C12HBa0040O03.2	BLAST_tomato_bac_ends	clone_end	33737	34027	537	+	0	ID=C12HBa0040O03.2-LE_HBa0058B19_SP6_45780_1;blast_gaps=0;Target=LE_HBa0058B19_SP6_45780 5 295 +;is_problematic=0;blast_percent_identity=98.28;blast_mismatches=5;blast_evalue=2e-149
C12HBa0040O03.2	BLAST_tomato_bac_ends	clone_start	34400	34557	281	+	0	ID=C12HBa0040O03.2-SL_MboI0050A12_T7_153275_1;blast_gaps=1;Target=SL_MboI0050A12_T7_153275 1 157 +;is_problematic=0;blast_percent_identity=98.10;blast_mismatches=2;blast_evalue=2e-72
C12HBa0040O03.2	BLAST_tomato_bac_ends	clone_end	34605	34879	507	+	0	ID=C12HBa0040O03.2-LE_HBa0227L01_SP6_404051_1;blast_gaps=1;Target=LE_HBa0227L01_SP6_404051 40 315 +;is_problematic=0;blast_percent_identity=98.55;blast_mismatches=3;blast_evalue=2e-140
C12HBa0040O03.2	BLAST_tomato_bac_ends	clone_start	34605	35067	870	+	0	ID=C12HBa0040O03.2-SL_MboI0050A12_T7_153275_2;blast_gaps=0;Target=SL_MboI0050A12_T7_153275 205 667 +;is_problematic=0;blast_percent_identity=98.70;blast_mismatches=6;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bac_ends	clone_end	34605	34932	634	+	0	ID=C12HBa0040O03.2-LE_HBa0135L16_SP6_61614_1;blast_gaps=0;Target=LE_HBa0135L16_SP6_61614 141 468 +;is_problematic=0;blast_percent_identity=99.39;blast_mismatches=2;blast_evalue=1e-178
C12HBa0040O03.2	BLAST_tomato_bac_ends	clone_start	35414	35893	904	-	0	ID=C12HBa0040O03.2-SL_EcoRI0056L19_T7_248380_1;blast_gaps=0;Target=SL_EcoRI0056L19_T7_248380 4 483 +;is_problematic=0;blast_percent_identity=98.75;blast_mismatches=6;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bac_ends	clone_end	37287	37855	1072	-	0	ID=C12HBa0040O03.2-SL_MboI0011H16_SP6_159657_1;blast_gaps=1;Target=SL_MboI0011H16_SP6_159657 1 568 +;is_problematic=0;blast_percent_identity=98.95;blast_mismatches=5;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bac_ends	clone_start	40172	40432	460	-	0	ID=C12HBa0040O03.2-SL_EcoRI0052K07_T7_245818_1;blast_gaps=1;Target=SL_EcoRI0052K07_T7_245818 495 754 +;is_problematic=0;blast_percent_identity=99.62;blast_mismatches=0;blast_evalue=4e-126
C12HBa0040O03.2	BLAST_tomato_bac_ends	clone_start	40494	40923	779	-	0	ID=C12HBa0040O03.2-SL_EcoRI0052K07_T7_245818_2;blast_gaps=1;Target=SL_EcoRI0052K07_T7_245818 5 433 +;is_problematic=0;blast_percent_identity=99.30;blast_mismatches=2;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bac_ends	clone_end	44198	44745	1086	-	0	ID=C12HBa0040O03.2-LE_HBa0165B12_SP6_262380_1;blast_gaps=0;Target=LE_HBa0165B12_SP6_262380 1 548 +;is_problematic=0;blast_percent_identity=100.00;blast_mismatches=0;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bac_ends	clone_end	53426	53907	892	+	0	ID=C12HBa0040O03.2-SL_FOS0264K15_pIBR_603125_1;blast_gaps=0;Target=SL_FOS0264K15_pIBR_603125 96 577 +;is_problematic=0;blast_percent_identity=98.34;blast_mismatches=8;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bac_ends	clone_end	53426	53649	412	+	0	ID=C12HBa0040O03.2-SL_FOS0032D02_pIBR_415361_1;blast_gaps=0;Target=SL_FOS0032D02_pIBR_415361 90 313 +;is_problematic=0;blast_percent_identity=98.21;blast_mismatches=4;blast_evalue=9e-112
C12HBa0040O03.2	BLAST_tomato_bac_ends	clone_end	53426	53891	852	+	0	ID=C12HBa0040O03.2-LE_HBa0120F08_SP6_87422_1;blast_gaps=0;Target=LE_HBa0120F08_SP6_87422 162 627 +;is_problematic=0;blast_percent_identity=98.07;blast_mismatches=9;blast_evalue=0.0
C12HBa0040O03.2	BLAST_tomato_bac_ends	clone_start	53426	53704	545	+	0	ID=C12HBa0040O03.2-SL_EcoRI0120G01_T7_327061_1;blast_gaps=0;Target=SL_EcoRI0120G01_T7_327061 406 684 +;is_problematic=0;blast_percent_identity=99.64;blast_mismatches=1;blast_evalue=1e-151
C12HBa0040O03.2	BLAST_tomato_bac_ends	clone_end	56961	57160	381	-	0	ID=C12HBa0040O03.2-SL_MboI0144C07_SP6_364896_1;blast_gaps=0;Target=SL_MboI0144C07_SP6_364896 485 684 +;is_problematic=0;blast_percent_identity=99.00;blast_mismatches=2;blast_evalue=3e-102
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match	41630	45859	0.996	-	0	ID=SGN-E353288_alignment_2;Target=SGN-E353288 1 790 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	45616	45859	1.000	-	0	ID=GTH_SGN_E_tom_match_part_1;Target=SGN-E353288 1 244 +;Parent=SGN-E353288_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	44572	44720	1.000	-	0	ID=GTH_SGN_E_tom_match_part_2;Target=SGN-E353288 245 393 +;Parent=SGN-E353288_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	41630	42026	0.992	-	0	ID=GTH_SGN_E_tom_match_part_3;Target=SGN-E353288 394 790 +;Parent=SGN-E353288_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match	41663	45859	0.999	-	0	ID=SGN-E349532_alignment_2;Target=SGN-E349532 1 757 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	45616	45859	1.000	-	0	ID=GTH_SGN_E_tom_match_part_4;Target=SGN-E349532 1 244 +;Parent=SGN-E349532_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	44572	44720	1.000	-	0	ID=GTH_SGN_E_tom_match_part_5;Target=SGN-E349532 245 393 +;Parent=SGN-E349532_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	41663	42026	0.997	-	0	ID=GTH_SGN_E_tom_match_part_6;Target=SGN-E349532 394 757 +;Parent=SGN-E349532_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match	41680	45672	0.998	-	0	ID=SGN-E298564_alignment_2;Target=SGN-E298564 1 553 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	45616	45672	1.000	-	0	ID=GTH_SGN_E_tom_match_part_7;Target=SGN-E298564 1 57 +;Parent=SGN-E298564_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	44572	44720	1.000	-	0	ID=GTH_SGN_E_tom_match_part_8;Target=SGN-E298564 58 206 +;Parent=SGN-E298564_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	41680	42026	0.997	-	0	ID=GTH_SGN_E_tom_match_part_9;Target=SGN-E298564 207 553 +;Parent=SGN-E298564_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match	41715	45988	1.000	-	0	ID=SGN-E552493_alignment_2;Target=SGN-E552493 1 834 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	45616	45988	1.000	-	0	ID=GTH_SGN_E_tom_match_part_10;Target=SGN-E552493 1 373 +;Parent=SGN-E552493_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	44572	44720	1.000	-	0	ID=GTH_SGN_E_tom_match_part_11;Target=SGN-E552493 374 522 +;Parent=SGN-E552493_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	41715	42026	1.000	-	0	ID=GTH_SGN_E_tom_match_part_12;Target=SGN-E552493 523 834 +;Parent=SGN-E552493_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match	41715	45915	1.000	-	0	ID=SGN-E718809_alignment_2;Target=SGN-E718809 15 775 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	45616	45915	1.000	-	0	ID=GTH_SGN_E_tom_match_part_13;Target=SGN-E718809 15 314 +;Parent=SGN-E718809_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	44572	44720	1.000	-	0	ID=GTH_SGN_E_tom_match_part_14;Target=SGN-E718809 315 463 +;Parent=SGN-E718809_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	41715	42026	1.000	-	0	ID=GTH_SGN_E_tom_match_part_15;Target=SGN-E718809 464 775 +;Parent=SGN-E718809_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match	41728	45906	0.997	-	0	ID=SGN-E713546_alignment_2;Target=SGN-E713546 1 739 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	45616	45906	1.000	-	0	ID=GTH_SGN_E_tom_match_part_16;Target=SGN-E713546 1 291 +;Parent=SGN-E713546_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	44572	44720	1.000	-	0	ID=GTH_SGN_E_tom_match_part_17;Target=SGN-E713546 292 440 +;Parent=SGN-E713546_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	41728	42026	0.993	-	0	ID=GTH_SGN_E_tom_match_part_18;Target=SGN-E713546 441 739 +;Parent=SGN-E713546_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match	41728	41973	1.000	-	0	ID=SGN-E309653_alignment_2;Target=SGN-E309653 1 246 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	41728	41973	1.000	-	0	ID=GTH_SGN_E_tom_match_part_19;Target=SGN-E309653 1 246 +;Parent=SGN-E309653_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match	41737	45988	1.000	-	0	ID=SGN-E555191_alignment_2;Target=SGN-E555191 1 812 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	45616	45988	1.000	-	0	ID=GTH_SGN_E_tom_match_part_20;Target=SGN-E555191 1 373 +;Parent=SGN-E555191_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	44572	44720	1.000	-	0	ID=GTH_SGN_E_tom_match_part_21;Target=SGN-E555191 374 522 +;Parent=SGN-E555191_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	41737	42026	1.000	-	0	ID=GTH_SGN_E_tom_match_part_22;Target=SGN-E555191 523 812 +;Parent=SGN-E555191_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match	41757	45903	0.986	-	0	ID=SGN-E343641_alignment_2;Target=SGN-E343641 1 704 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	45616	45903	1.000	-	0	ID=GTH_SGN_E_tom_match_part_23;Target=SGN-E343641 1 288 +;Parent=SGN-E343641_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	44572	44720	1.000	-	0	ID=GTH_SGN_E_tom_match_part_24;Target=SGN-E343641 289 437 +;Parent=SGN-E343641_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	41757	42026	0.963	-	0	ID=GTH_SGN_E_tom_match_part_25;Target=SGN-E343641 438 704 +;Parent=SGN-E343641_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match	41772	45859	0.995	-	0	ID=SGN-E354746_alignment_2;Target=SGN-E354746 1 648 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	45616	45859	1.000	-	0	ID=GTH_SGN_E_tom_match_part_26;Target=SGN-E354746 1 244 +;Parent=SGN-E354746_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	44572	44720	1.000	-	0	ID=GTH_SGN_E_tom_match_part_27;Target=SGN-E354746 245 393 +;Parent=SGN-E354746_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	41772	42026	0.988	-	0	ID=GTH_SGN_E_tom_match_part_28;Target=SGN-E354746 394 648 +;Parent=SGN-E354746_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match	41780	45859	0.994	-	0	ID=SGN-E352628_alignment_2;Target=SGN-E352628 1 640 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	45616	45859	1.000	-	0	ID=GTH_SGN_E_tom_match_part_29;Target=SGN-E352628 1 244 +;Parent=SGN-E352628_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	44572	44720	1.000	-	0	ID=GTH_SGN_E_tom_match_part_30;Target=SGN-E352628 245 393 +;Parent=SGN-E352628_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	41780	42026	0.984	-	0	ID=GTH_SGN_E_tom_match_part_31;Target=SGN-E352628 394 640 +;Parent=SGN-E352628_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match	41845	45988	1.000	-	0	ID=SGN-E556002_alignment_2;Target=SGN-E556002 1 704 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	45616	45988	1.000	-	0	ID=GTH_SGN_E_tom_match_part_32;Target=SGN-E556002 1 373 +;Parent=SGN-E556002_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	44572	44720	1.000	-	0	ID=GTH_SGN_E_tom_match_part_33;Target=SGN-E556002 374 522 +;Parent=SGN-E556002_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	41845	42026	1.000	-	0	ID=GTH_SGN_E_tom_match_part_34;Target=SGN-E556002 523 704 +;Parent=SGN-E556002_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match	41866	45877	0.998	-	0	ID=SGN-E721340_alignment_2;Target=SGN-E721340 1 572 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	45616	45877	0.996	-	0	ID=GTH_SGN_E_tom_match_part_35;Target=SGN-E721340 1 262 +;Parent=SGN-E721340_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	44572	44720	1.000	-	0	ID=GTH_SGN_E_tom_match_part_36;Target=SGN-E721340 263 411 +;Parent=SGN-E721340_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	41866	42026	1.000	-	0	ID=GTH_SGN_E_tom_match_part_37;Target=SGN-E721340 412 572 +;Parent=SGN-E721340_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match	41879	45977	0.988	-	0	ID=SGN-E365099_alignment_2;Target=SGN-E365099 1 657 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	45616	45977	0.989	-	0	ID=GTH_SGN_E_tom_match_part_38;Target=SGN-E365099 1 360 +;Parent=SGN-E365099_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	44572	44720	0.993	-	0	ID=GTH_SGN_E_tom_match_part_39;Target=SGN-E365099 361 509 +;Parent=SGN-E365099_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	41879	42026	0.980	-	0	ID=GTH_SGN_E_tom_match_part_40;Target=SGN-E365099 510 657 +;Parent=SGN-E365099_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match	41927	45851	0.994	-	0	ID=SGN-E287441_alignment_2;Target=SGN-E287441 1 486 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	45616	45851	0.987	-	0	ID=GTH_SGN_E_tom_match_part_41;Target=SGN-E287441 1 237 +;Parent=SGN-E287441_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	44572	44720	1.000	-	0	ID=GTH_SGN_E_tom_match_part_42;Target=SGN-E287441 238 386 +;Parent=SGN-E287441_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	41927	42026	1.000	-	0	ID=GTH_SGN_E_tom_match_part_43;Target=SGN-E287441 387 486 +;Parent=SGN-E287441_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match	41953	45970	0.990	-	0	ID=SGN-E362468_alignment_2;Target=SGN-E362468 1 576 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	45616	45970	0.989	-	0	ID=GTH_SGN_E_tom_match_part_44;Target=SGN-E362468 1 353 +;Parent=SGN-E362468_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	44572	44720	0.993	-	0	ID=GTH_SGN_E_tom_match_part_45;Target=SGN-E362468 354 502 +;Parent=SGN-E362468_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	41953	42026	0.986	-	0	ID=GTH_SGN_E_tom_match_part_46;Target=SGN-E362468 503 576 +;Parent=SGN-E362468_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match	41975	45907	0.982	-	0	ID=SGN-E319277_alignment_2;Target=SGN-E319277 1 493 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	45616	45907	0.969	-	0	ID=GTH_SGN_E_tom_match_part_47;Target=SGN-E319277 1 292 +;Parent=SGN-E319277_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	44572	44720	1.000	-	0	ID=GTH_SGN_E_tom_match_part_48;Target=SGN-E319277 293 441 +;Parent=SGN-E319277_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	41975	42026	1.000	-	0	ID=GTH_SGN_E_tom_match_part_49;Target=SGN-E319277 442 493 +;Parent=SGN-E319277_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match	44675	45907	0.959	-	0	ID=SGN-E319276_alignment_2;Target=SGN-E319276 1 338 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	45616	45907	0.959	-	0	ID=GTH_SGN_E_tom_match_part_50;Target=SGN-E319276 1 292 +;Parent=SGN-E319276_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	44675	44720	0.978	-	0	ID=GTH_SGN_E_tom_match_part_51;Target=SGN-E319276 293 338 +;Parent=SGN-E319276_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match	48391	48961	0.995	-	0	ID=SGN-E315256_alignment_2;Target=SGN-E315256 1 571 +
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	match_part	48391	48961	0.995	-	0	ID=GTH_SGN_E_tom_match_part_52;Target=SGN-E315256 1 571 +;Parent=SGN-E315256_alignment_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	gene	41630	45988	.	-	0	ID=GTH_SGN_E_tom_gene_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	mRNA	41630	45988	.	-	0	ID=GTH_SGN_E_tom_gene_1_AGS_1;Parent=GTH_SGN_E_tom_gene_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	exon	45616	45988	1.000	-	0	ID=GTH_SGN_E_tom_exon_1;Parent=GTH_SGN_E_tom_gene_1_AGS_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	exon	44572	44720	1.000	-	0	ID=GTH_SGN_E_tom_exon_2;Parent=GTH_SGN_E_tom_gene_1_AGS_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	exon	41630	42026	0.992	-	0	ID=GTH_SGN_E_tom_exon_3;Parent=GTH_SGN_E_tom_gene_1_AGS_1
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	gene	48391	48961	.	-	0	ID=GTH_SGN_E_tom_gene_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	mRNA	48391	48961	.	-	0	ID=GTH_SGN_E_tom_gene_2_AGS_1;Parent=GTH_SGN_E_tom_gene_2
C12HBa0040O03.2	GenomeThreader_SGN_E_tomato	exon	48391	48961	0.995	-	0	ID=GTH_SGN_E_tom_exon_4;Parent=GTH_SGN_E_tom_gene_2_AGS_1
C12HBa0040O03.2	AUGUSTUS_tom_cdna	gene	4418	30378	1	-	.	ID=g1_1
C12HBa0040O03.2	AUGUSTUS_tom_cdna	transcript	4418	30378	.	-	.	ID=g1.t1_1;Parent=g1_1
C12HBa0040O03.2	AUGUSTUS_tom_cdna	CDS	4418	4488	.	-	0	ID=g1.t1.cds_1;Parent=g1.t1_1
C12HBa0040O03.2	AUGUSTUS_tom_cdna	CDS	4654	5706	.	-	0	ID=g1.t1.cds_2;Parent=g1.t1_1
C12HBa0040O03.2	AUGUSTUS_tom_cdna	CDS	7218	8478	.	-	1	ID=g1.t1.cds_3;Parent=g1.t1_1
C12HBa0040O03.2	AUGUSTUS_tom_cdna	CDS	9963	10038	.	-	2	ID=g1.t1.cds_4;Parent=g1.t1_1
C12HBa0040O03.2	AUGUSTUS_tom_cdna	CDS	10386	10813	.	-	1	ID=g1.t1.cds_5;Parent=g1.t1_1
C12HBa0040O03.2	AUGUSTUS_tom_cdna	CDS	12918	13027	.	-	0	ID=g1.t1.cds_6;Parent=g1.t1_1
C12HBa0040O03.2	AUGUSTUS_tom_cdna	CDS	21242	21324	.	-	2	ID=g1.t1.cds_7;Parent=g1.t1_1
C12HBa0040O03.2	AUGUSTUS_tom_cdna	CDS	30312	30378	.	-	0	ID=g1.t1.cds_8;Parent=g1.t1_1
C12HBa0040O03.2	AUGUSTUS_tom_cdna	start_codon	30376	30378	.	-	0	Parent=g1.t1_1
C12HBa0040O03.2	AUGUSTUS_tom_cdna	gene	41888	45801	1	-	.	ID=g2_1
C12HBa0040O03.2	AUGUSTUS_tom_cdna	transcript	41888	45801	.	-	.	ID=g2.t1_1;Parent=g2_1
C12HBa0040O03.2	AUGUSTUS_tom_cdna	stop_codon	41888	41890	.	-	0	Parent=g2.t1_1
C12HBa0040O03.2	AUGUSTUS_tom_cdna	CDS	41888	42026	.	-	1	ID=g2.t1.cds_1;Parent=g2.t1_1
C12HBa0040O03.2	AUGUSTUS_tom_cdna	CDS	44572	44720	.	-	0	ID=g2.t1.cds_2;Parent=g2.t1_1
C12HBa0040O03.2	AUGUSTUS_tom_cdna	CDS	45616	45801	.	-	0	ID=g2.t1.cds_3;Parent=g2.t1_1
C12HBa0040O03.2	AUGUSTUS_tom_cdna	start_codon	45799	45801	.	-	0	Parent=g2.t1_1
C12HBa0040O03.2	AUGUSTUS_tom_cdna	gene	45886	50047	1	-	.	ID=g3_1
C12HBa0040O03.2	AUGUSTUS_tom_cdna	transcript	45886	50047	.	-	.	ID=g3.t1_1;Parent=g3_1
C12HBa0040O03.2	AUGUSTUS_tom_cdna	stop_codon	45886	45888	.	-	0	Parent=g3.t1_1
C12HBa0040O03.2	AUGUSTUS_tom_cdna	CDS	45886	45986	.	-	2	ID=g3.t1.cds_1;Parent=g3.t1_1
C12HBa0040O03.2	AUGUSTUS_tom_cdna	CDS	46983	47561	.	-	2	ID=g3.t1.cds_2;Parent=g3.t1_1
C12HBa0040O03.2	AUGUSTUS_tom_cdna	CDS	49948	50047	.	-	0	ID=g3.t1.cds_3;Parent=g3.t1_1
C12HBa0040O03.2	AUGUSTUS_tom_cdna	start_codon	50045	50047	.	-	0	Parent=g3.t1_1
C12HBa0040O03.2	AUGUSTUS_ab_initio	gene	4418	21310	1	-	.	ID=g1_2
C12HBa0040O03.2	AUGUSTUS_ab_initio	transcript	4418	21310	.	-	.	ID=g1.t1_2;Parent=g1_2
C12HBa0040O03.2	AUGUSTUS_ab_initio	CDS	4418	4488	.	-	0	ID=g1.t1.cds_9;Parent=g1.t1_2
C12HBa0040O03.2	AUGUSTUS_ab_initio	CDS	4654	5706	.	-	0	ID=g1.t1.cds_10;Parent=g1.t1_2
C12HBa0040O03.2	AUGUSTUS_ab_initio	CDS	7218	8478	.	-	1	ID=g1.t1.cds_11;Parent=g1.t1_2
C12HBa0040O03.2	AUGUSTUS_ab_initio	CDS	9963	10038	.	-	2	ID=g1.t1.cds_12;Parent=g1.t1_2
C12HBa0040O03.2	AUGUSTUS_ab_initio	CDS	10386	10813	.	-	1	ID=g1.t1.cds_13;Parent=g1.t1_2
C12HBa0040O03.2	AUGUSTUS_ab_initio	CDS	12918	13027	.	-	0	ID=g1.t1.cds_14;Parent=g1.t1_2
C12HBa0040O03.2	AUGUSTUS_ab_initio	CDS	21242	21310	.	-	0	ID=g1.t1.cds_15;Parent=g1.t1_2
C12HBa0040O03.2	AUGUSTUS_ab_initio	start_codon	21308	21310	.	-	0	Parent=g1.t1_2
C12HBa0040O03.2	AUGUSTUS_ab_initio	gene	44568	50047	1	-	.	ID=g2_2
C12HBa0040O03.2	AUGUSTUS_ab_initio	transcript	44568	50047	.	-	.	ID=g2.t1_2;Parent=g2_2
C12HBa0040O03.2	AUGUSTUS_ab_initio	stop_codon	44568	44570	.	-	0	Parent=g2.t1_2
C12HBa0040O03.2	AUGUSTUS_ab_initio	CDS	44568	44720	.	-	0	ID=g2.t1.cds_4;Parent=g2.t1_2
C12HBa0040O03.2	AUGUSTUS_ab_initio	CDS	46969	47561	.	-	2	ID=g2.t1.cds_5;Parent=g2.t1_2
C12HBa0040O03.2	AUGUSTUS_ab_initio	CDS	49948	50047	.	-	0	ID=g2.t1.cds_6;Parent=g2.t1_2
C12HBa0040O03.2	AUGUSTUS_ab_initio	start_codon	50045	50047	.	-	0	Parent=g2.t1_2
C12HBa0040O03.2	AUGUSTUS_tom_ugs	gene	4418	21310	1	-	.	ID=g1_3
C12HBa0040O03.2	AUGUSTUS_tom_ugs	transcript	4418	21310	.	-	.	ID=g1.t1_3;Parent=g1_3
C12HBa0040O03.2	AUGUSTUS_tom_ugs	CDS	4418	4488	.	-	0	ID=g1.t1.cds_16;Parent=g1.t1_3
C12HBa0040O03.2	AUGUSTUS_tom_ugs	CDS	4654	5706	.	-	0	ID=g1.t1.cds_17;Parent=g1.t1_3
C12HBa0040O03.2	AUGUSTUS_tom_ugs	CDS	7218	8478	.	-	1	ID=g1.t1.cds_18;Parent=g1.t1_3
C12HBa0040O03.2	AUGUSTUS_tom_ugs	CDS	9963	10038	.	-	2	ID=g1.t1.cds_19;Parent=g1.t1_3
C12HBa0040O03.2	AUGUSTUS_tom_ugs	CDS	10386	10813	.	-	1	ID=g1.t1.cds_20;Parent=g1.t1_3
C12HBa0040O03.2	AUGUSTUS_tom_ugs	CDS	12918	13027	.	-	0	ID=g1.t1.cds_21;Parent=g1.t1_3
C12HBa0040O03.2	AUGUSTUS_tom_ugs	CDS	21242	21310	.	-	0	ID=g1.t1.cds_22;Parent=g1.t1_3
C12HBa0040O03.2	AUGUSTUS_tom_ugs	start_codon	21308	21310	.	-	0	Parent=g1.t1_3
C12HBa0040O03.2	AUGUSTUS_tom_ugs	gene	41888	45651	1	-	.	ID=g2_3
C12HBa0040O03.2	AUGUSTUS_tom_ugs	transcript	41888	45651	.	-	.	ID=g2.t1_3;Parent=g2_3
C12HBa0040O03.2	AUGUSTUS_tom_ugs	stop_codon	41888	41890	.	-	0	Parent=g2.t1_3
C12HBa0040O03.2	AUGUSTUS_tom_ugs	CDS	41888	42026	.	-	1	ID=g2.t1.cds_7;Parent=g2.t1_3
C12HBa0040O03.2	AUGUSTUS_tom_ugs	CDS	44572	44720	.	-	0	ID=g2.t1.cds_8;Parent=g2.t1_3
C12HBa0040O03.2	AUGUSTUS_tom_ugs	CDS	45616	45651	.	-	0	ID=g2.t1.cds_9;Parent=g2.t1_3
C12HBa0040O03.2	AUGUSTUS_tom_ugs	start_codon	45649	45651	.	-	0	Parent=g2.t1_3
C12HBa0040O03.2	AUGUSTUS_tom_ugs	gene	46897	50047	1	-	.	ID=g3_2
C12HBa0040O03.2	AUGUSTUS_tom_ugs	transcript	46897	50047	.	-	.	ID=g3.t1_2;Parent=g3_2
C12HBa0040O03.2	AUGUSTUS_tom_ugs	stop_codon	46897	46899	.	-	0	Parent=g3.t1_2
C12HBa0040O03.2	AUGUSTUS_tom_ugs	CDS	46897	47561	.	-	2	ID=g3.t1.cds_4;Parent=g3.t1_2
C12HBa0040O03.2	AUGUSTUS_tom_ugs	CDS	49948	50047	.	-	0	ID=g3.t1.cds_5;Parent=g3.t1_2
C12HBa0040O03.2	AUGUSTUS_tom_ugs	start_codon	50045	50047	.	-	0	Parent=g3.t1_2
C12HBa0040O03.2	GenomeThreader_SGN_U_tomato	match	41684	45989	0.999	-	0	ID=SGN-U579503_alignment_1;Target=SGN-U579503 1 866 +
C12HBa0040O03.2	GenomeThreader_SGN_U_tomato	match_part	45616	45989	0.997	-	0	ID=GTH_SGN_U_tom_match_part_1;Target=SGN-U579503 1 374 +;Parent=SGN-U579503_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_U_tomato	match_part	44572	44720	1.000	-	0	ID=GTH_SGN_U_tom_match_part_2;Target=SGN-U579503 375 523 +;Parent=SGN-U579503_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_U_tomato	match_part	41684	42026	1.000	-	0	ID=GTH_SGN_U_tom_match_part_3;Target=SGN-U579503 524 866 +;Parent=SGN-U579503_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_U_tomato	match	48359	48963	0.993	-	0	ID=SGN-U600319_alignment_1;Target=SGN-U600319 1 605 +
C12HBa0040O03.2	GenomeThreader_SGN_U_tomato	match_part	48359	48963	0.993	-	0	ID=GTH_SGN_U_tom_match_part_4;Target=SGN-U600319 1 605 +;Parent=SGN-U600319_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_U_tomato	gene	41684	45989	.	-	0	ID=GTH_SGN_U_tom_gene_1
C12HBa0040O03.2	GenomeThreader_SGN_U_tomato	mRNA	41684	45989	.	-	0	ID=GTH_SGN_U_tom_gene_1_AGS_1;Parent=GTH_SGN_U_tom_gene_1
C12HBa0040O03.2	GenomeThreader_SGN_U_tomato	exon	45616	45989	0.997	-	0	ID=GTH_SGN_U_tom_exon_1;Parent=GTH_SGN_U_tom_gene_1_AGS_1
C12HBa0040O03.2	GenomeThreader_SGN_U_tomato	exon	44572	44720	1.000	-	0	ID=GTH_SGN_U_tom_exon_2;Parent=GTH_SGN_U_tom_gene_1_AGS_1
C12HBa0040O03.2	GenomeThreader_SGN_U_tomato	exon	41684	42026	1.000	-	0	ID=GTH_SGN_U_tom_exon_3;Parent=GTH_SGN_U_tom_gene_1_AGS_1
C12HBa0040O03.2	GenomeThreader_SGN_U_tomato	gene	48359	48963	.	-	0	ID=GTH_SGN_U_tom_gene_2
C12HBa0040O03.2	GenomeThreader_SGN_U_tomato	mRNA	48359	48963	.	-	0	ID=GTH_SGN_U_tom_gene_2_AGS_1;Parent=GTH_SGN_U_tom_gene_2
C12HBa0040O03.2	GenomeThreader_SGN_U_tomato	exon	48359	48963	0.993	-	0	ID=GTH_SGN_U_tom_exon_4;Parent=GTH_SGN_U_tom_gene_2_AGS_1
C12HBa0040O03.2	GenomeThreader_SGN_markers	match	10186	10665	1.000	+	0	ID=SGN-M154-R_alignment_1;Target=SGN-M154-R 1 480 +
C12HBa0040O03.2	GenomeThreader_SGN_markers	match_part	10186	10665	1.000	+	0	ID=GTH_SGN_markers_match_part_1;Target=SGN-M154-R 1 480 +;Parent=SGN-M154-R_alignment_1
C12HBa0040O03.2	GenomeThreader_SGN_markers	match	11237	11697	1.000	-	0	ID=SGN-M154-F_alignment_1;Target=SGN-M154-F 1 461 +
C12HBa0040O03.2	GenomeThreader_SGN_markers	match_part	11237	11697	1.000	-	0	ID=GTH_SGN_markers_match_part_2;Target=SGN-M154-F 1 461 +;Parent=SGN-M154-F_alignment_1
C12HBa0040O03.2	AUGUSTUS_tom_pot_cdna	gene	4418	30378	1	-	.	ID=g1_4
C12HBa0040O03.2	AUGUSTUS_tom_pot_cdna	transcript	4418	30378	.	-	.	ID=g1.t1_4;Parent=g1_4
C12HBa0040O03.2	AUGUSTUS_tom_pot_cdna	CDS	4418	4488	.	-	0	ID=g1.t1.cds_23;Parent=g1.t1_4
C12HBa0040O03.2	AUGUSTUS_tom_pot_cdna	CDS	4654	5706	.	-	0	ID=g1.t1.cds_24;Parent=g1.t1_4
C12HBa0040O03.2	AUGUSTUS_tom_pot_cdna	CDS	7218	8478	.	-	1	ID=g1.t1.cds_25;Parent=g1.t1_4
C12HBa0040O03.2	AUGUSTUS_tom_pot_cdna	CDS	9963	10038	.	-	2	ID=g1.t1.cds_26;Parent=g1.t1_4
C12HBa0040O03.2	AUGUSTUS_tom_pot_cdna	CDS	10386	10813	.	-	1	ID=g1.t1.cds_27;Parent=g1.t1_4
C12HBa0040O03.2	AUGUSTUS_tom_pot_cdna	CDS	12918	13027	.	-	0	ID=g1.t1.cds_28;Parent=g1.t1_4
C12HBa0040O03.2	AUGUSTUS_tom_pot_cdna	CDS	21242	21324	.	-	2	ID=g1.t1.cds_29;Parent=g1.t1_4
C12HBa0040O03.2	AUGUSTUS_tom_pot_cdna	CDS	30312	30378	.	-	0	ID=g1.t1.cds_30;Parent=g1.t1_4
C12HBa0040O03.2	AUGUSTUS_tom_pot_cdna	start_codon	30376	30378	.	-	0	Parent=g1.t1_4
C12HBa0040O03.2	AUGUSTUS_tom_pot_cdna	gene	41888	45801	1	-	.	ID=g2_4
C12HBa0040O03.2	AUGUSTUS_tom_pot_cdna	transcript	41888	45801	.	-	.	ID=g2.t1_4;Parent=g2_4
C12HBa0040O03.2	AUGUSTUS_tom_pot_cdna	stop_codon	41888	41890	.	-	0	Parent=g2.t1_4
C12HBa0040O03.2	AUGUSTUS_tom_pot_cdna	CDS	41888	42026	.	-	1	ID=g2.t1.cds_10;Parent=g2.t1_4
C12HBa0040O03.2	AUGUSTUS_tom_pot_cdna	CDS	44572	44720	.	-	0	ID=g2.t1.cds_11;Parent=g2.t1_4
C12HBa0040O03.2	AUGUSTUS_tom_pot_cdna	CDS	45616	45801	.	-	0	ID=g2.t1.cds_12;Parent=g2.t1_4
C12HBa0040O03.2	AUGUSTUS_tom_pot_cdna	start_codon	45799	45801	.	-	0	Parent=g2.t1_4
C12HBa0040O03.2	AUGUSTUS_tom_pot_cdna	gene	45886	50359	1	-	.	ID=g3_3
C12HBa0040O03.2	AUGUSTUS_tom_pot_cdna	transcript	45886	50359	.	-	.	ID=g3.t1_3;Parent=g3_3
C12HBa0040O03.2	AUGUSTUS_tom_pot_cdna	stop_codon	45886	45888	.	-	0	Parent=g3.t1_3
C12HBa0040O03.2	AUGUSTUS_tom_pot_cdna	CDS	45886	45986	.	-	2	ID=g3.t1.cds_6;Parent=g3.t1_3
C12HBa0040O03.2	AUGUSTUS_tom_pot_cdna	CDS	46983	47663	.	-	2	ID=g3.t1.cds_7;Parent=g3.t1_3
C12HBa0040O03.2	AUGUSTUS_tom_pot_cdna	CDS	50266	50359	.	-	0	ID=g3.t1.cds_8;Parent=g3.t1_3
C12HBa0040O03.2	AUGUSTUS_tom_pot_cdna	start_codon	50357	50359	.	-	0	Parent=g3.t1_3
C12HBa0040O03.2	BLAST_ath_pep	match	46969	47664	269	-	0	ID=AT1G01225.1_fwd_alignment_1;blast_gaps=2;Target=AT1G01225.1 32 253 +;blast_match_length=-695;blast_percent_identity=58.19;blast_mismatches=97;blast_evalue=2e-70
C12HBa0040O03.2	BLAST_ath_pep	match	28371	28544	65.1	+	0	ID=AT1G21400.1_fwd_alignment_1;blast_gaps=1;Target=AT1G21400.1 360 418 +;blast_match_length=173;blast_percent_identity=45.76;blast_mismatches=31;blast_evalue=3e-36
C12HBa0040O03.2	BLAST_ath_pep	match	26568	26972	121	+	0	ID=AT1G21400.1_fwd_alignment_2;blast_gaps=1;Target=AT1G21400.1 186 271 +;blast_match_length=404;blast_percent_identity=48.89;blast_mismatches=69;blast_evalue=3e-41
C12HBa0040O03.2	BLAST_ath_pep	match	28639	28785	56.2	+	0	ID=AT1G21400.1_fwd_alignment_3;blast_gaps=0;Target=AT1G21400.1 418 466 +;blast_match_length=146;blast_percent_identity=48.98;blast_mismatches=25;blast_evalue=3e-36
C12HBa0040O03.2	BLAST_ath_pep	match	28150	28290	76.3	+	0	ID=AT1G21400.1_fwd_alignment_4;blast_gaps=0;Target=AT1G21400.1 310 356 +;blast_match_length=140;blast_percent_identity=70.21;blast_mismatches=14;blast_evalue=3e-36
C12HBa0040O03.2	BLAST_ath_pep	match	27037	27153	72.0	+	0	ID=AT1G21400.1_fwd_alignment_5;blast_gaps=0;Target=AT1G21400.1 271 309 +;blast_match_length=116;blast_percent_identity=74.36;blast_mismatches=10;blast_evalue=3e-41
C12HBa0040O03.2	BLAST_ath_pep	match	38261	38638	108	-	0	ID=AT1G66770.1_fwd_alignment_1;blast_gaps=1;Target=AT1G66770.1 30 156 +;blast_match_length=-377;blast_percent_identity=45.67;blast_mismatches=68;blast_evalue=3e-22
C12HBa0040O03.2	BLAST_ath_pep	match	46975	47664	202	-	0	ID=AT3G02700.1_fwd_alignment_1;blast_gaps=6;Target=AT3G02700.1 32 252 +;blast_match_length=-689;blast_percent_identity=49.36;blast_mismatches=114;blast_evalue=2e-50
C12HBa0040O03.2	BLAST_ath_pep	match	38153	38638	117	-	0	ID=AT3G28007.1_fwd_alignment_1;blast_gaps=2;Target=AT3G28007.1 28 193 +;blast_match_length=-485;blast_percent_identity=42.17;blast_mismatches=92;blast_evalue=1e-24
C12HBa0040O03.2	BLAST_ath_pep	match	46996	47664	261	-	0	ID=AT4G00905.1_fwd_alignment_1;blast_gaps=2;Target=AT4G00905.1 32 254 +;blast_match_length=-668;blast_percent_identity=58.93;blast_mismatches=91;blast_evalue=4e-68
C12HBa0040O03.2	BLAST_ath_pep	match	38261	38638	130	-	0	ID=AT4G10850.1_fwd_alignment_1;blast_gaps=1;Target=AT4G10850.1 30 156 +;blast_match_length=-377;blast_percent_identity=53.54;blast_mismatches=58;blast_evalue=8e-29
C12HBa0040O03.2	BLAST_ath_pep	match	7218	8471	241	-	0	ID=AT4G10930.1_fwd_alignment_1;blast_gaps=15;Target=AT4G10930.1 168 534 +;blast_match_length=-1253;blast_percent_identity=41.88;blast_mismatches=240;blast_evalue=3e-68
C12HBa0040O03.2	BLAST_ath_pep	match	4903	5709	181	-	0	ID=AT4G10930.1_fwd_alignment_2;blast_gaps=10;Target=AT4G10930.1 559 834 +;blast_match_length=-806;blast_percent_identity=42.40;blast_mismatches=149;blast_evalue=4e-44
C12HBa0040O03.2	BLAST_ath_pep	match	7057	7128	42.7	-	0	ID=AT4G10930.1_fwd_alignment_3;blast_gaps=0;Target=AT4G10930.1 535 558 +;blast_match_length=-71;blast_percent_identity=75.00;blast_mismatches=6;blast_evalue=3e-68
C12HBa0040O03.2	BLAST_ath_pep	match	4294	4491	120	-	0	ID=AT4G10930.1_fwd_alignment_4;blast_gaps=0;Target=AT4G10930.1 908 973 +;blast_match_length=-197;blast_percent_identity=86.36;blast_mismatches=9;blast_evalue=9e-26
C12HBa0040O03.2	BLAST_ath_pep	match	47032	47664	214	-	0	ID=AT5G06370.1_fwd_alignment_1;blast_gaps=4;Target=AT5G06370.1 32 235 +;blast_match_length=-632;blast_percent_identity=52.56;blast_mismatches=98;blast_evalue=8e-54
C12HBa0040O03.2	BLAST_ath_pep	match	28371	28553	60.8	+	0	ID=AT5G09300.1_fwd_alignment_1;blast_gaps=1;Target=AT5G09300.1 360 421 +;blast_match_length=182;blast_percent_identity=43.55;blast_mismatches=34;blast_evalue=2e-36
C12HBa0040O03.2	BLAST_ath_pep	match	28639	28803	65.1	+	0	ID=AT5G09300.1_fwd_alignment_2;blast_gaps=0;Target=AT5G09300.1 418 472 +;blast_match_length=164;blast_percent_identity=52.73;blast_mismatches=26;blast_evalue=2e-36
C12HBa0040O03.2	BLAST_ath_pep	match	28150	28287	72.4	+	0	ID=AT5G09300.1_fwd_alignment_3;blast_gaps=0;Target=AT5G09300.1 310 355 +;blast_match_length=137;blast_percent_identity=67.39;blast_mismatches=15;blast_evalue=2e-36
C12HBa0040O03.2	BLAST_ath_pep	match	28371	28553	60.8	+	0	ID=AT5G09300.2_fwd_alignment_1;blast_gaps=1;Target=AT5G09300.2 289 350 +;blast_match_length=182;blast_percent_identity=43.55;blast_mismatches=34;blast_evalue=2e-36
C12HBa0040O03.2	BLAST_ath_pep	match	28639	28803	65.1	+	0	ID=AT5G09300.2_fwd_alignment_2;blast_gaps=0;Target=AT5G09300.2 347 401 +;blast_match_length=164;blast_percent_identity=52.73;blast_mismatches=26;blast_evalue=2e-36
C12HBa0040O03.2	BLAST_ath_pep	match	28150	28287	72.4	+	0	ID=AT5G09300.2_fwd_alignment_3;blast_gaps=0;Target=AT5G09300.2 239 284 +;blast_match_length=137;blast_percent_identity=67.39;blast_mismatches=15;blast_evalue=2e-36
C12HBa0040O03.2	BLAST_ath_pep	match	47035	47664	138	-	0	ID=AT5G16330.1_fwd_alignment_1;blast_gaps=6;Target=AT5G16330.1 40 228 +;blast_match_length=-629;blast_percent_identity=40.91;blast_mismatches=120;blast_evalue=4e-31
C12HBa0040O03.2	BLAST_ath_pep	match	47008	47664	162	-	0	ID=AT5G16360.1_fwd_alignment_1;blast_gaps=6;Target=AT5G16360.1 32 275 +;blast_match_length=-656;blast_percent_identity=42.57;blast_mismatches=113;blast_evalue=3e-38
C12HBa0040O03.2	BLAST_ath_pep	match	38258	38626	110	-	0	ID=AT5G62850.1_fwd_alignment_1;blast_gaps=0;Target=AT5G62850.1 3 125 +;blast_match_length=-368;blast_percent_identity=44.72;blast_mismatches=68;blast_evalue=1e-22