consed.primersSubcloneFullPathnameOfFileOfSequencesForScreening: /local/deborah/consed16/lib/screenLibs/primerSubcloneScreen.seq
consed.primersCloneFullPathnameOfFileOfSequencesForScreening: /local/deborah/consed16/lib/screenLibs/primerCloneScreen.seq
consed.autoFinishCallReversesToFlankGaps: false
consed.autoFinishAllowWholeCloneReads: true
consed.autoFinishAllowCustomPrimerSubcloneReads: false
consed.autoFinishAllowResequencingReads: false
consed.autoFinishAllowDeNovoUniversalPrimerSubcloneReads: false
consed.autoFinishAllowPCR: false
consed.autoFinishAllowUnorientedPCRReactions: false
consed.autoFinishExcludeContigIfDepthOfCoverageGreaterThanThis: 150.000000
consed.autoFinishNearGapsSuggestEachMissingReadOfReadPairs: false
consed.checkIfTooManyWalks: false
consed.fakeReadsSpecifiedByFilenameExtension: false
consed.fullPathnameOfAddReads2ConsedScript: /local/deborah/consed16/bin/addReads2Consed.perl
consed.fullPathnameOfCrossMatch: /local/deborah/consed16/bin/cross_match
consed.fullPathnameOfPhred: /local/deborah/consed16/bin/phred
consed.fullPathnameOfMiniassemblyScript: /local/deborah/consed16/bin/phredPhrap
consed.primersMinimumLengthOfAPrimer: 14
consed.primersMaxMeltingTempDifferenceForPCR: 5.000000
consed.defaultVectorPathnameForRestrictionFragments: /local/deborah/consed16/lib/screenLibs/singleVectorForRestrictionDigest.fasta
consed.assemblyViewFindSequenceMatchesForConsedScript: /local/deborah/consed16/bin/findSequenceMatchesForConsed.perl
consed.alwaysRunProgramToGetChromats: true
consed.programToRunToGetChromats: sff2scf
consed.primersMaxMatchElsewhereScore: 18
consed.qualityThresholdForLowConsensusQuality: 35
