##gff-version 3
# This output was generated with AUGUSTUS (version 2.3).
# AUGUSTUS is a gene prediction tool for eukaryotes written by Mario Stanke (mstanke@gwdg.de)
# and Oliver Keller (keller@cs.uni-goettingen.de).
# Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008),
# Using native and syntenically mapped cDNA alignments to improve de novo gene finding
# Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013
# No extrinsic information on sequences given.
# Initialising the parameters ...
# tomato version. Use default transition matrix.
# Looks like /tmp/bac-submission-temp-C00HBa0032K07-IYm47/AUGUSTUS_ab_initio/seq_with_defline_removed is in fasta format.
# We have hints for 0 sequences and for 0 of the sequences in the input set.
#
# ----- prediction on sequence number 1 (length = 119347, name = C00HBa0032K07.2) -----
#
# Predicted genes for sequence number 1 on both strands
# start gene g1
C00HBa0032K07.2	AUGUSTUS_ab_initio	gene	12782	19740	0.05	-	.	ID=g1
C00HBa0032K07.2	AUGUSTUS_ab_initio	transcript	12782	19740	0.05	-	.	ID=g1.t1;Parent=g1
C00HBa0032K07.2	AUGUSTUS_ab_initio	stop_codon	12782	12784	.	-	0	Parent=g1.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	12976	13219	0.98	-	.	Parent=g1.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	13376	13462	0.92	-	.	Parent=g1.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	13592	14417	0.66	-	.	Parent=g1.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	14550	16424	0.43	-	.	Parent=g1.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	16620	19433	0.55	-	.	Parent=g1.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	19590	19715	0.53	-	.	Parent=g1.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	12782	12975	0.65	-	2	ID=g1.t1.cds;Parent=g1.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	13220	13375	1	-	2	ID=g1.t1.cds;Parent=g1.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	13463	13591	0.92	-	2	ID=g1.t1.cds;Parent=g1.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	14418	14549	0.67	-	2	ID=g1.t1.cds;Parent=g1.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	16425	16619	0.83	-	2	ID=g1.t1.cds;Parent=g1.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	19434	19589	0.57	-	2	ID=g1.t1.cds;Parent=g1.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	19716	19740	0.53	-	0	ID=g1.t1.cds;Parent=g1.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	start_codon	19738	19740	.	-	0	Parent=g1.t1
# protein sequence = [MLFLDVQLGSIQNDDWVDVRNVTEFLEKFYELTLEVSGSLFVTCNVHFQDMCELDEYLKACELYTWGRDEGDGRLGLG
# PGRGHNEAGGLSIPLKVKSLPTGVAAVSCGGFFTMALSEEGELWNWGDAETHGHLFIHCKTTANMWYMLYRSLDLSWVTSKTTFELLNNWKANSNYEL
# GRGDKLGGWKPQPVPSLKGVRVIQIASGGYHSLALTDKGEVLSWGHGGHGQLGNSSLQNQKVPIQVEALAHEKVIYISCGGSSSAAITDGGKLYMWGY
# AKDCQLGVPGLPEKQSSPIEVKFLMEDDGLGNHNVLSVAIGASHAMCLVSRSGH]
# end gene g1
###
# start gene g2
C00HBa0032K07.2	AUGUSTUS_ab_initio	gene	31068	35178	0.19	-	.	ID=g2
C00HBa0032K07.2	AUGUSTUS_ab_initio	transcript	31068	35178	0.19	-	.	ID=g2.t1;Parent=g2
C00HBa0032K07.2	AUGUSTUS_ab_initio	stop_codon	31068	31070	.	-	0	Parent=g2.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	31223	32670	0.31	-	.	Parent=g2.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	32811	34636	0.81	-	.	Parent=g2.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	31068	31222	0.23	-	2	ID=g2.t1.cds;Parent=g2.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	32671	32810	0.97	-	1	ID=g2.t1.cds;Parent=g2.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	34637	35178	1	-	0	ID=g2.t1.cds;Parent=g2.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	start_codon	35176	35178	.	-	0	Parent=g2.t1
# protein sequence = [MAFYYRTRRALPIFRWRRHLSSSSSSKVALLWESKSTDSQKAVTVQLYSWGRGASGQLGGGIEEIRIYPSPVASFSLS
# PTFRLSSPIPGRLPSAPVLLSSSFNEGKVDVEIGISCGLFHSALLVDGNLWIWGKGDGGRLGFGHENPVFVPTLNTHLDSVRSVALGGLHSVALNSLG
# QVFTWGYGGFGALGHKVYHRELVPRLVEGSWDAEICHVATSGTHTAAITKSDILPDLWTLTLHHTVFPLTKSVHSEYTIHCVSTSQCIRLQNRARESV
# QYIQ]
# end gene g2
###
# start gene g3
C00HBa0032K07.2	AUGUSTUS_ab_initio	gene	37231	45493	0.16	+	.	ID=g3
C00HBa0032K07.2	AUGUSTUS_ab_initio	transcript	37231	45493	0.16	+	.	ID=g3.t1;Parent=g3
C00HBa0032K07.2	AUGUSTUS_ab_initio	start_codon	37231	37233	.	+	0	Parent=g3.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	37246	37406	0.49	+	.	Parent=g3.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	37518	38022	0.53	+	.	Parent=g3.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	38064	38597	0.87	+	.	Parent=g3.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	39174	40127	0.97	+	.	Parent=g3.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	40171	40250	0.99	+	.	Parent=g3.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	40325	44922	0.38	+	.	Parent=g3.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	37231	37245	0.88	+	0	ID=g3.t1.cds;Parent=g3.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	37407	37517	0.52	+	0	ID=g3.t1.cds;Parent=g3.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	38023	38063	0.92	+	0	ID=g3.t1.cds;Parent=g3.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	38598	39173	0.91	+	1	ID=g3.t1.cds;Parent=g3.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	40128	40170	0.99	+	1	ID=g3.t1.cds;Parent=g3.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	40251	40324	0.39	+	0	ID=g3.t1.cds;Parent=g3.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	44923	45493	0.91	+	1	ID=g3.t1.cds;Parent=g3.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	stop_codon	45491	45493	.	+	0	Parent=g3.t1
# protein sequence = [MVQVEKFYSDAASLQQSFGLAEFHDRFPVSGIFKLLESDLINGNLVSVLIPLMTLRETIDQPLIPGLPDDLALRCLAM
# ISHGYHGILETVSRRWRKLFHSAEYSNYKAREGWSGNWLFVLTGGSENQWVAYDPEADRWHPLPRIPTSHPDQEHLGFSCACVLNKFLLIGGTYGARD
# QVIPHQTALTTNEVFQFDPFRKEWRNVASMRTARSNFACSVVSGKVYVAGGRNTSSGGGLVLAEVYNPLTDNFVLLNEKGTGRLCQDEHGKNDWGNEI
# PVEFLKNTGKTRRWEDLPPLPSPQMDCIGLPYNGKFYVLTDLVGLLEQETSVVFDPSDETWLSVNDTWPFSRAMHLGIQVLDGGHICTVVDWGGSAIE
# TRDVDNTEWHRRGLVPPVVLPDHPRPLEVFDYGFVALRNEIYVLGGRVLRWEESGTGKFNIVKLSTVRVCNPLSLPLRWREIRPMCEPAFGSILGCAS
# METRSL]
# end gene g3
###
# start gene g4
C00HBa0032K07.2	AUGUSTUS_ab_initio	gene	45609	46709	0.32	-	.	ID=g4
C00HBa0032K07.2	AUGUSTUS_ab_initio	transcript	45609	46709	0.32	-	.	ID=g4.t1;Parent=g4
C00HBa0032K07.2	AUGUSTUS_ab_initio	stop_codon	45609	45611	.	-	0	Parent=g4.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	45680	45865	0.41	-	.	Parent=g4.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	45991	46323	0.46	-	.	Parent=g4.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	45609	45679	0.42	-	2	ID=g4.t1.cds;Parent=g4.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	45866	45990	0.42	-	1	ID=g4.t1.cds;Parent=g4.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	46324	46709	0.45	-	0	ID=g4.t1.cds;Parent=g4.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	start_codon	46707	46709	.	-	0	Parent=g4.t1
# protein sequence = [MPFLLKRIGSASTTNQAGSVATDNGPHLIGLCFFRLQTREELFHISNYASSRSSSKDIKRIGSASTTNQAGSVTTDND
# THLIGLCFFRLQANEGLFHINNYASSLSSSKDKGKGWTTLCVPDLIEKERMQNCYCCLKCANKNMNHIDKVLKMSRLSTISEIQELRKKASREFDSKL
# AAFPQRSRSTSLAPVRI]
# end gene g4
###
# start gene g5
C00HBa0032K07.2	AUGUSTUS_ab_initio	gene	47504	49628	0.67	-	.	ID=g5
C00HBa0032K07.2	AUGUSTUS_ab_initio	transcript	47504	49628	0.67	-	.	ID=g5.t1;Parent=g5
C00HBa0032K07.2	AUGUSTUS_ab_initio	stop_codon	47504	47506	.	-	0	Parent=g5.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	48281	49409	0.97	-	.	Parent=g5.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	47504	48280	0.68	-	0	ID=g5.t1.cds;Parent=g5.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	49410	49628	0.97	-	0	ID=g5.t1.cds;Parent=g5.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	start_codon	49626	49628	.	-	0	Parent=g5.t1
# protein sequence = [MERGRGQWGSVFRGMIPLLGLHTLSEYSRLDRKPPITAALLAANTIIYLRPKFIHPFLPTIDQVWFNPHLILKYTDLK
# RFFLSPFFHVNESHLVYNMLSLLWKGIQLETSMGSAEFASMVATLVAMSQGVTLLLAKSLLLFFDYERPYYNEYSVGFSGVLFAMKVIVNSQSDEYTS
# VHGLMVPTRYAAWAELVLVQMFVPGVSFLGHLGGILAGLLYLQLKASYSGLNPVRQFMRGFSHALSWPLRLVKSLFRHRPRITGRGTAGARIARDTLH
# TWRCDACTFDNSGRLNVCEMCGTGRTGDAPSSPGSTSEIHDLSLEELRRRRIQRFGR]
# end gene g5
###
# start gene g6
C00HBa0032K07.2	AUGUSTUS_ab_initio	gene	53074	53373	0.82	-	.	ID=g6
C00HBa0032K07.2	AUGUSTUS_ab_initio	transcript	53074	53373	0.82	-	.	ID=g6.t1;Parent=g6
C00HBa0032K07.2	AUGUSTUS_ab_initio	stop_codon	53074	53076	.	-	0	Parent=g6.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	53074	53373	0.82	-	0	ID=g6.t1.cds;Parent=g6.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	start_codon	53371	53373	.	-	0	Parent=g6.t1
# protein sequence = [MHMFSKEHNVLGGFAFIGEGIQVATCVAFTRKYKMEVLKEDDCDHVTLSFFGDGTCNNGQFYECLNMAALWKLPIIFV
# DENNLWAIGMSHLRSTFDPEI]
# end gene g6
###
# start gene g7
C00HBa0032K07.2	AUGUSTUS_ab_initio	gene	57144	67278	0.02	+	.	ID=g7
C00HBa0032K07.2	AUGUSTUS_ab_initio	transcript	57144	67278	0.02	+	.	ID=g7.t1;Parent=g7
C00HBa0032K07.2	AUGUSTUS_ab_initio	start_codon	57144	57146	.	+	0	Parent=g7.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	57284	61843	0.61	+	.	Parent=g7.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	62177	65192	0.16	+	.	Parent=g7.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	65306	65400	0.8	+	.	Parent=g7.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	65464	66656	0.59	+	.	Parent=g7.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	66778	67175	0.34	+	.	Parent=g7.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	57144	57283	0.89	+	0	ID=g7.t1.cds;Parent=g7.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	61844	62176	0.35	+	1	ID=g7.t1.cds;Parent=g7.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	65193	65305	0.32	+	1	ID=g7.t1.cds;Parent=g7.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	65401	65463	0.98	+	2	ID=g7.t1.cds;Parent=g7.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	66657	66777	0.35	+	2	ID=g7.t1.cds;Parent=g7.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	67176	67278	0.32	+	1	ID=g7.t1.cds;Parent=g7.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	stop_codon	67276	67278	.	+	0	Parent=g7.t1
# protein sequence = [MNSTFKINFNDWELDSLFELMDRPEGYNMNPKLQISFVGVLRQRNTLTTSSTLSSLFNFISSTSSSLFNFILSSSLFS
# TTSAFFSPLPLLLQPASTATSSSVASRRPRAAASQQPAAVANRSAAAREPRQQVAAASRSAAASRRRQQQQPATSQPRCSSLGSTGGNRKTGKSSVFS
# LFNLKDRSKFWSESVIHGGDFDDLEASKPEKLSVLNYTQAERNFPCSVFSGEDLKGVLHGEICDPVQVSWRARGLLCFSRRATSVGDYKPISVVGSTY
# RIFSKVLSTSLKKVLV]
# end gene g7
###
# start gene g8
C00HBa0032K07.2	AUGUSTUS_ab_initio	gene	68956	71585	0.22	+	.	ID=g8
C00HBa0032K07.2	AUGUSTUS_ab_initio	transcript	68956	71585	0.22	+	.	ID=g8.t1;Parent=g8
C00HBa0032K07.2	AUGUSTUS_ab_initio	start_codon	68956	68958	.	+	0	Parent=g8.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	69308	70685	0.79	+	.	Parent=g8.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	70788	70934	0.79	+	.	Parent=g8.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	71104	71206	0.88	+	.	Parent=g8.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	71306	71422	1	+	.	Parent=g8.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	68956	69307	0.55	+	0	ID=g8.t1.cds;Parent=g8.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	70686	70787	0.76	+	2	ID=g8.t1.cds;Parent=g8.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	70935	71103	0.86	+	2	ID=g8.t1.cds;Parent=g8.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	71207	71305	1	+	1	ID=g8.t1.cds;Parent=g8.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	71423	71585	0.41	+	1	ID=g8.t1.cds;Parent=g8.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	stop_codon	71583	71585	.	+	0	Parent=g8.t1
# protein sequence = [MGFWDLRFRRNLQNWEVNEFPRLRTLIHKQCEPINRPDALSWKLRNNKVFSVKSIYEKLLVRMDVSFSYDLVSIPKVL
# RKVCFSHGWLLRGDIDDGRILGKERLFVGAAYERVELNMSNIANYLKLLEVDSMYLPVPVNFIFIGFEGKGNQEFNLQPLELERWFSKIDHILEHTRI
# PQVGEVLTPFYKTSIDREQRHHLPLISHINYNFSVHAIQMGEKVTSIFERAIDIFGRKDDMSDNRDDGTVLWQVDVDMMDVLYTSLVEYLQLEDAYNI
# FILNPKRNGKRVKYGYRFFL]
# end gene g8
###
# start gene g9
C00HBa0032K07.2	AUGUSTUS_ab_initio	gene	78413	83184	0.1	+	.	ID=g9
C00HBa0032K07.2	AUGUSTUS_ab_initio	transcript	78413	83184	0.1	+	.	ID=g9.t1;Parent=g9
C00HBa0032K07.2	AUGUSTUS_ab_initio	start_codon	78413	78415	.	+	0	Parent=g9.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	78486	79695	0.56	+	.	Parent=g9.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	79736	79883	0.64	+	.	Parent=g9.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	79946	80051	0.76	+	.	Parent=g9.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	80135	81161	0.88	+	.	Parent=g9.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	81261	81461	0.86	+	.	Parent=g9.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	81548	81622	1	+	.	Parent=g9.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	81742	82864	0.78	+	.	Parent=g9.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	78413	78485	0.57	+	0	ID=g9.t1.cds;Parent=g9.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	79696	79735	0.64	+	2	ID=g9.t1.cds;Parent=g9.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	79884	79945	0.76	+	1	ID=g9.t1.cds;Parent=g9.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	80052	80134	0.98	+	2	ID=g9.t1.cds;Parent=g9.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	81162	81260	0.88	+	0	ID=g9.t1.cds;Parent=g9.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	81462	81547	0.89	+	0	ID=g9.t1.cds;Parent=g9.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	81623	81741	1	+	1	ID=g9.t1.cds;Parent=g9.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	82865	83184	0.19	+	2	ID=g9.t1.cds;Parent=g9.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	stop_codon	83182	83184	.	+	0	Parent=g9.t1
# protein sequence = [MLELMEREMFPSRKRSLLLDEKKKGKGYPKAKLTFLGRIRRYNQKFFTQEEHQKVSLVALEKMTRPLYAKHPMAKFSW
# TVTEDTDTAEWYTRCVDVLNNVEKVSQGKDMAEVVQNKVMQLRFERELKAGKFSGFHAECLTDTWIGNHRWAFIDLTAGPFSWGPAVGGEGVRTELSL
# PNVEKTIGAVAEPEPLQVDNSTHEEDLAAHATEWIQANMIKLGQQFGVDFKGRKKEAYTMLAMLDQRREKDPGKEEKMKTIKSNNDVPKEVRNLFFSM
# NFKDGEPKSSGRILALTNQ]
# end gene g9
###
# start gene g10
C00HBa0032K07.2	AUGUSTUS_ab_initio	gene	87695	100046	0.03	+	.	ID=g10
C00HBa0032K07.2	AUGUSTUS_ab_initio	transcript	87695	100046	0.03	+	.	ID=g10.t1;Parent=g10
C00HBa0032K07.2	AUGUSTUS_ab_initio	start_codon	87695	87697	.	+	0	Parent=g10.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	87819	89578	0.25	+	.	Parent=g10.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	89650	90488	0.88	+	.	Parent=g10.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	90601	90788	1	+	.	Parent=g10.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	90929	91119	0.94	+	.	Parent=g10.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	91279	91346	0.93	+	.	Parent=g10.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	91451	91724	1	+	.	Parent=g10.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	91901	96199	0.25	+	.	Parent=g10.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	96390	97898	0.99	+	.	Parent=g10.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	97999	98678	0.92	+	.	Parent=g10.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	98848	99280	0.64	+	.	Parent=g10.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	99361	99568	0.95	+	.	Parent=g10.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	99646	99874	0.84	+	.	Parent=g10.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	87695	87818	0.29	+	0	ID=g10.t1.cds;Parent=g10.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	89579	89649	0.85	+	2	ID=g10.t1.cds;Parent=g10.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	90489	90600	0.88	+	0	ID=g10.t1.cds;Parent=g10.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	90789	90928	1	+	2	ID=g10.t1.cds;Parent=g10.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	91120	91278	0.94	+	0	ID=g10.t1.cds;Parent=g10.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	91347	91450	0.99	+	0	ID=g10.t1.cds;Parent=g10.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	91725	91900	0.63	+	1	ID=g10.t1.cds;Parent=g10.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	96200	96389	0.8	+	2	ID=g10.t1.cds;Parent=g10.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	97899	97998	1	+	1	ID=g10.t1.cds;Parent=g10.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	98679	98847	0.87	+	0	ID=g10.t1.cds;Parent=g10.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	99281	99360	0.69	+	2	ID=g10.t1.cds;Parent=g10.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	99569	99645	0.85	+	0	ID=g10.t1.cds;Parent=g10.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	99875	100046	0.82	+	1	ID=g10.t1.cds;Parent=g10.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	stop_codon	100044	100046	.	+	0	Parent=g10.t1
# protein sequence = [MSNTEFPKMLRGLNEAEDLEDSSRGQRNYQQDSRKISFQRREISEDEAENLLQEAIQEKFAVFGDVQKDHQAIDILLA
# EIDIYELFAFNHCKGRKVKLALCEELDERMQDLKNELQSFEGEGSDESHRTKAVDALKRMENWNLFSESYEDYKNYTVARDTFLAHLGATLWGSMRHI
# ISPSLADGAFHYYEKISFQLFFITQEKFRNIKQLPVDLKTIMNGLSSLVLSSQEVMFSPHMLPLSEDPALAMAFSVARRAAAVPLLLVNGTYRKTVRS
# YLDSSILQHQLQRLNDHGSLKGSHAHSRSTLEVPIFWFIHSDPLLVDKHYQAKALSDMVIVVQSEEPSWESHLQCNGRSLLWDLRKPVKAALAAVSEH
# LAGMLPLHLVYSQAHETAIEDWIWSVGCNPLSITSQGWHISKFHSDTVARSYVLTALEESVQLVNSAIHRLVMERTXQTFKLFKTHERELVNKYNYVV
# SLWRRISTVSGELRYLDALRLLYTLEDASKGFVNYVDTTLASLHPVHCTRRREVKVEFDMTTIPAFLVVFFVLWFVLKPRRAKPKIN]
# end gene g10
###
# start gene g11
C00HBa0032K07.2	AUGUSTUS_ab_initio	gene	100964	106004	0.35	-	.	ID=g11
C00HBa0032K07.2	AUGUSTUS_ab_initio	transcript	100964	106004	0.35	-	.	ID=g11.t1;Parent=g11
C00HBa0032K07.2	AUGUSTUS_ab_initio	stop_codon	100964	100966	.	-	0	Parent=g11.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	101189	102059	0.96	-	.	Parent=g11.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	102263	102371	1	-	.	Parent=g11.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	102862	103316	0.44	-	.	Parent=g11.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	103384	103476	0.43	-	.	Parent=g11.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	intron	103527	105731	0.47	-	.	Parent=g11.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	100964	101188	0.93	-	0	ID=g11.t1.cds;Parent=g11.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	102060	102262	1	-	2	ID=g11.t1.cds;Parent=g11.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	102372	102861	0.84	-	0	ID=g11.t1.cds;Parent=g11.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	103317	103383	0.44	-	1	ID=g11.t1.cds;Parent=g11.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	103477	103526	0.43	-	0	ID=g11.t1.cds;Parent=g11.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	105732	106004	0.8	-	0	ID=g11.t1.cds;Parent=g11.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	start_codon	106002	106004	.	-	0	Parent=g11.t1
# protein sequence = [MDDYTLSFSITRKSLLIVAIVTTVSAFLSSFSPNYISLLILRMLVGTGLGGGPVYGSWFLEFVPSRNRGMWMVIYSTF
# WTVGTILEALLAMFFFESAANNRDSLVIDRTKHLCVTNELLASSSIPLKKRQIIMPRLGWRWLLALSSIPSFAAFLLYIFTVESPRYLCAEGRITDAH
# DILRKIAVVNQTKLPPGMLVSDQVIELDEEQKLLRPRANKIFNFKTGLSSSLMLLSPQLLRITLLMWVVYFGNSFAYYGIILLTSQFSAGENRCFSVA
# LHVKNDSSLYTDVFITSLAELPGLLISAVVVEKVGRKYSMALMYIFGSLFLFPLVVPQNEALTTALLFGARIWFIGTFTLAGVYCPEIYPTSVRSTGC
# GVASAVGRIAGMVSPIVAVQLVRGCHQMAAIILFEVVVILSAISVLLFPVETKGRELVDHVSV]
# end gene g11
###
# start gene g12
C00HBa0032K07.2	AUGUSTUS_ab_initio	gene	106104	106430	0.99	-	.	ID=g12
C00HBa0032K07.2	AUGUSTUS_ab_initio	transcript	106104	106430	0.99	-	.	ID=g12.t1;Parent=g12
C00HBa0032K07.2	AUGUSTUS_ab_initio	stop_codon	106104	106106	.	-	0	Parent=g12.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	106104	106430	0.99	-	0	ID=g12.t1.cds;Parent=g12.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	start_codon	106428	106430	.	-	0	Parent=g12.t1
# protein sequence = [MAPQQQQVEEEDEHVYTLDEALTALGFGKFQYLVLCYAGLGSMVDAVEVMILSFIGPAVKSQWGLSSTQETLITTVVF
# AGMLIGAYFWGILADNYGRRQAYLTFFNIY]
# end gene g12
###
# start gene g13
C00HBa0032K07.2	AUGUSTUS_ab_initio	gene	118387	118722	0.93	-	.	ID=g13
C00HBa0032K07.2	AUGUSTUS_ab_initio	transcript	118387	118722	0.93	-	.	ID=g13.t1;Parent=g13
C00HBa0032K07.2	AUGUSTUS_ab_initio	stop_codon	118387	118389	.	-	0	Parent=g13.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	CDS	118387	118722	0.93	-	0	ID=g13.t1.cds;Parent=g13.t1
C00HBa0032K07.2	AUGUSTUS_ab_initio	start_codon	118720	118722	.	-	0	Parent=g13.t1
# protein sequence = [MIQHRPYTQKVDVYSFGIVLWELLTGMLPFQNMTAVQAAFAVVNKGVRPTIPTDCLPVLAEIMTCCWDGNPDNRPPFS
# QVVRMLEAAETEILTKVRKARFRCCISQPMTTD]
# end gene g13
###
# command line:
# /usr/bin/augustus.real --species=tomato --extrinsicCfgFile=extrinsic.ME.cfg --gff3=on /tmp/bac-submission-temp-C00HBa0032K07-IYm47/AUGUSTUS_ab_initio/seq_with_defline_removed