psLayout version 3 match mis- rep. N's Q gap Q gap T gap T gap strand Q Q Q Q T T T T block blockSizes qStarts tStarts match match count bases count bases name size start end name size start end count --------------------------------------------------------------------------------------------------------------------------------------------------------------- 409 18 0 0 0 0 2 969 - SGN-E746959 999 10 437 C00SLf0138K20.2 19776 511 1907 3 173,148,106, 562,735,883, 511,1568,1801, 345 9 0 0 0 0 2 969 - SGN-E554518 886 0 354 C00SLf0138K20.2 19776 511 1834 3 173,148,33, 532,705,853, 511,1568,1801, 156 11 0 0 1 13 1 1 - SGN-E203450 482 23 203 C00SLf0138K20.2 19776 16414 16582 2 55,112, 279,347, 16414,16470, 365 18 0 0 2 26 2 995 - SGN-E206585 409 0 409 C00SLf0138K20.2 19776 519 1897 3 143,144,96, 0,163,313, 519,1566,1801, 271 13 0 0 1 6 3 1391 - SGN-E210130 290 0 290 C00SLf0138K20.2 19776 177 1852 4 6,85,142,51, 0,6,91,239, 177,599,1568,1801, 397 0 0 0 0 0 2 969 - SGN-E212968 575 0 397 C00SLf0138K20.2 19776 511 1877 3 173,148,76, 178,351,499, 511,1568,1801, 408 19 0 0 0 0 2 969 - SGN-E318754 466 0 427 C00SLf0138K20.2 19776 511 1907 3 173,148,106, 39,212,360, 511,1568,1801, 403 19 0 0 0 0 2 969 - SGN-E318828 518 0 422 C00SLf0138K20.2 19776 513 1904 3 171,148,103, 96,267,415, 513,1568,1801, 282 8 0 0 0 0 3 1385 - SGN-E318926 296 6 296 C00SLf0138K20.2 19776 177 1852 4 6,85,148,51, 0,6,91,239, 177,599,1568,1801, 398 20 0 0 0 0 2 969 - SGN-E321068 595 0 418 C00SLf0138K20.2 19776 511 1898 3 173,148,97, 177,350,498, 511,1568,1801, 403 18 0 0 0 0 2 969 - SGN-E318963 523 0 421 C00SLf0138K20.2 19776 511 1901 3 173,148,100, 102,275,423, 511,1568,1801, 66 0 0 0 0 0 0 0 + SGN-E314460 631 565 631 C00SLf0138K20.2 19776 511 577 1 66, 565, 511, 379 12 0 0 0 0 2 969 - SGN-E320380 618 3 394 C00SLf0138K20.2 19776 511 1871 3 173,148,70, 224,397,545, 511,1568,1801, 315 8 0 0 0 0 1 884 - SGN-E320507 663 9 332 C00SLf0138K20.2 19776 511 1718 2 173,150, 331,504, 511,1568, 394 6 0 0 2 2 2 970 - SGN-E322991 581 0 402 C00SLf0138K20.2 19776 511 1881 4 173,87,60,80, 179,352,440,501, 511,1568,1655,1801, 398 17 0 0 0 0 2 969 - SGN-E310211 617 1 416 C00SLf0138K20.2 19776 511 1895 3 173,148,94, 201,374,522, 511,1568,1801, 363 9 0 0 0 0 2 969 - SGN-E202745 454 15 387 C00SLf0138K20.2 19776 511 1852 3 173,148,51, 67,240,388, 511,1568,1801, 363 9 0 0 0 0 2 969 - SGN-E202759 515 15 387 C00SLf0138K20.2 19776 511 1852 3 173,148,51, 128,301,449, 511,1568,1801, 324 10 0 0 0 0 2 969 - SGN-E200163 342 8 342 C00SLf0138K20.2 19776 549 1852 3 135,148,51, 0,135,283, 549,1568,1801, 341 0 0 0 0 0 2 969 - SGN-E238306 341 0 341 C00SLf0138K20.2 19776 574 1884 3 110,148,83, 0,110,258, 574,1568,1801, 238 0 0 0 0 0 1 884 - SGN-E239876 238 0 238 C00SLf0138K20.2 19776 525 1647 2 159,79, 0,159, 525,1568, 139 2 0 0 0 0 0 0 - SGN-E228406 544 0 141 C00SLf0138K20.2 19776 511 652 1 141, 403, 511, 380 4 0 1 0 0 2 969 - SGN-E725452 414 0 385 C00SLf0138K20.2 19776 511 1865 3 173,148,64, 29,202,350, 511,1568,1801, 376 3 0 1 2 6 3 974 - SGN-E725731 563 0 386 C00SLf0138K20.2 19776 511 1865 4 173,149,31,27, 177,350,500,536, 511,1568,1803,1838, 402 18 0 0 0 0 2 969 - SGN-E726440 990 0 420 C00SLf0138K20.2 19776 511 1900 3 173,148,99, 570,743,891, 511,1568,1801, 407 2 0 0 0 0 2 969 - SGN-E727991 697 0 409 C00SLf0138K20.2 19776 511 1889 3 173,148,88, 288,461,609, 511,1568,1801, 379 12 0 0 1 1 2 969 - SGN-E728980 625 9 401 C00SLf0138K20.2 19776 511 1871 4 173,132,16,70, 224,397,530,546, 511,1568,1700,1801, 389 15 0 0 0 0 2 969 - SGN-E729603 882 16 420 C00SLf0138K20.2 19776 511 1884 3 173,148,83, 462,635,783, 511,1568,1801, 363 9 0 0 0 0 2 969 - SGN-E729677 946 1 373 C00SLf0138K20.2 19776 511 1852 3 173,148,51, 573,746,894, 511,1568,1801, 397 18 0 0 0 0 2 969 - SGN-E730790 851 9 424 C00SLf0138K20.2 19776 511 1895 3 173,148,94, 427,600,748, 511,1568,1801, 426 8 0 0 0 0 2 969 - SGN-E720240 708 12 446 C00SLf0138K20.2 19776 511 1914 3 173,148,113, 262,435,583, 511,1568,1801, 504 7 0 0 0 0 2 969 - SGN-E721724 814 13 524 C00SLf0138K20.2 19776 511 1991 3 173,148,190, 290,463,611, 511,1568,1801, 371 9 0 0 1 8 3 982 - SGN-E724474 824 1 389 C00SLf0138K20.2 19776 511 1873 4 173,148,51,8, 435,608,756,815, 511,1568,1801,1865, 347 9 0 0 0 0 2 969 - SGN-E733342 850 5 361 C00SLf0138K20.2 19776 511 1836 3 173,148,35, 489,662,810, 511,1568,1801, 407 2 0 0 0 0 2 969 - SGN-E738860 818 0 409 C00SLf0138K20.2 19776 511 1889 3 173,148,88, 409,582,730, 511,1568,1801, 408 1 0 0 0 0 2 969 - SGN-E739741 958 0 409 C00SLf0138K20.2 19776 511 1889 3 173,148,88, 549,722,870, 511,1568,1801, 363 9 0 0 0 0 2 969 - SGN-E697886 755 50 422 C00SLf0138K20.2 19776 511 1852 3 173,148,51, 333,506,654, 511,1568,1801, 363 9 0 0 0 0 2 969 - SGN-E700094 797 11 383 C00SLf0138K20.2 19776 511 1852 3 173,148,51, 414,587,735, 511,1568,1801, 406 1 0 0 0 0 2 969 - SGN-E702132 909 0 407 C00SLf0138K20.2 19776 511 1887 3 173,148,86, 502,675,823, 511,1568,1801, 344 9 0 0 0 0 2 969 - SGN-E704749 812 0 353 C00SLf0138K20.2 19776 511 1833 3 173,148,32, 459,632,780, 511,1568,1801, 653 0 0 0 0 0 0 0 - SGN-E705627 842 0 653 C00SLf0138K20.2 19776 18308 18961 1 653, 189, 18308, 404 18 0 0 0 0 2 969 - SGN-E707265 887 2 424 C00SLf0138K20.2 19776 511 1902 3 173,148,101, 463,636,784, 511,1568,1801, 389 15 0 0 0 0 2 969 - SGN-E709580 811 3 407 C00SLf0138K20.2 19776 511 1884 3 173,148,83, 404,577,725, 511,1568,1801, 363 9 0 0 0 0 2 969 - SGN-E710119 805 53 425 C00SLf0138K20.2 19776 511 1852 3 173,148,51, 380,553,701, 511,1568,1801, 170 6 0 0 0 0 0 0 - SGN-E712001 742 0 176 C00SLf0138K20.2 19776 511 687 1 176, 566, 511, 621 0 0 0 0 0 0 0 - SGN-E713600 683 0 621 C00SLf0138K20.2 19776 18308 18929 1 621, 62, 18308, 404 18 0 0 0 0 2 969 - SGN-E714982 873 0 422 C00SLf0138K20.2 19776 511 1902 3 173,148,101, 451,624,772, 511,1568,1801, 134 2 0 0 0 0 0 0 - SGN-E243246 540 0 136 C00SLf0138K20.2 19776 511 647 1 136, 404, 511, 400 0 0 0 0 0 2 969 - SGN-E248087 598 0 400 C00SLf0138K20.2 19776 511 1880 3 173,148,79, 198,371,519, 511,1568,1801, 347 2 0 0 0 0 2 969 - SGN-E249691 626 0 349 C00SLf0138K20.2 19776 511 1829 3 173,148,28, 277,450,598, 511,1568,1801, 291 14 0 0 0 0 1 884 - SGN-E250347 305 0 305 C00SLf0138K20.2 19776 519 1708 2 165,140, 0,165, 519,1568, 376 15 0 0 0 0 2 969 - SGN-E257417 541 7 398 C00SLf0138K20.2 19776 511 1871 3 173,148,70, 143,316,464, 511,1568,1801, 353 8 0 0 1 11 2 980 + SGN-E281280 422 35 407 C00SLf0138K20.2 19776 511 1852 3 173,137,51, 35,208,356, 511,1568,1801, 380 2 0 0 1 5 3 975 + SGN-E277167 394 0 387 C00SLf0138K20.2 19776 527 1884 4 157,148,33,44, 0,157,305,343, 527,1568,1801,1840, 409 18 0 0 0 0 2 969 - SGN-E270613 541 9 436 C00SLf0138K20.2 19776 511 1907 3 173,148,106, 105,278,426, 511,1568,1801, 358 14 0 0 0 0 2 969 - SGN-E275303 431 9 381 C00SLf0138K20.2 19776 511 1852 3 173,148,51, 50,223,371, 511,1568,1801, 408 0 0 0 0 0 2 969 - SGN-E277515 583 0 408 C00SLf0138K20.2 19776 511 1888 3 173,148,87, 175,348,496, 511,1568,1801, 345 9 0 0 0 0 2 969 - SGN-E277438 532 0 354 C00SLf0138K20.2 19776 511 1834 3 173,148,33, 178,351,499, 511,1568,1801, 350 9 0 0 0 0 2 969 - SGN-E279518 579 0 359 C00SLf0138K20.2 19776 511 1839 3 173,148,38, 220,393,541, 511,1568,1801, 419 0 0 0 0 0 2 969 - SGN-E287830 578 0 419 C00SLf0138K20.2 19776 511 1899 3 173,148,98, 159,332,480, 511,1568,1801, 340 9 0 0 0 0 2 969 - SGN-E285863 388 0 349 C00SLf0138K20.2 19776 511 1829 3 173,148,28, 39,212,360, 511,1568,1801, 121 1 0 0 0 0 0 0 - SGN-E288177 593 0 122 C00SLf0138K20.2 19776 511 633 1 122, 471, 511, 350 1 0 0 0 0 2 969 - SGN-E292799 401 0 351 C00SLf0138K20.2 19776 511 1831 3 173,148,30, 50,223,371, 511,1568,1801, 133 0 0 0 0 0 0 0 - SGN-E297142 431 0 133 C00SLf0138K20.2 19776 511 644 1 133, 298, 511, 403 1 0 0 0 0 2 969 - SGN-E300111 583 0 404 C00SLf0138K20.2 19776 511 1884 3 173,148,83, 179,352,500, 511,1568,1801, 406 0 0 0 0 0 2 969 - SGN-E298072 584 0 406 C00SLf0138K20.2 19776 511 1886 3 173,148,85, 178,351,499, 511,1568,1801, 168 7 0 0 0 0 1 884 - SGN-E300241 175 0 175 C00SLf0138K20.2 19776 561 1620 2 123,52, 0,123, 561,1568, 330 21 0 0 0 0 2 969 - SGN-E298274 351 0 351 C00SLf0138K20.2 19776 579 1899 3 105,148,98, 0,105,253, 579,1568,1801, 313 8 0 0 0 0 1 884 - SGN-E301915 550 0 321 C00SLf0138K20.2 19776 511 1716 2 173,148, 229,402, 511,1568, 315 8 0 0 0 0 1 884 - SGN-E304457 518 16 339 C00SLf0138K20.2 19776 511 1718 2 173,150, 179,352, 511,1568, 372 0 0 0 0 0 2 969 - SGN-E308124 550 0 372 C00SLf0138K20.2 19776 511 1852 3 173,148,51, 178,351,499, 511,1568,1801, 363 11 0 0 0 0 2 969 - SGN-E330523 415 0 374 C00SLf0138K20.2 19776 511 1854 3 173,148,53, 41,214,362, 511,1568,1801, 416 0 0 0 0 0 2 969 - SGN-E325936 549 0 416 C00SLf0138K20.2 19776 511 1896 3 173,148,95, 133,306,454, 511,1568,1801, 383 21 0 1 0 0 2 969 - SGN-E325034 405 0 405 C00SLf0138K20.2 19776 530 1904 3 154,148,103, 0,154,302, 530,1568,1801, 372 0 0 0 1 1 2 969 - SGN-E323617 552 0 373 C00SLf0138K20.2 19776 511 1852 4 173,132,16,51, 179,352,485,501, 511,1568,1700,1801, 376 13 0 0 0 0 2 969 - SGN-E324155 459 28 417 C00SLf0138K20.2 19776 513 1871 3 171,148,70, 42,213,361, 513,1568,1801, 398 19 0 0 0 0 2 969 - SGN-E324131 518 0 417 C00SLf0138K20.2 19776 513 1899 3 171,148,98, 101,272,420, 513,1568,1801, 414 0 0 0 0 0 2 969 - SGN-E312134 518 0 414 C00SLf0138K20.2 19776 511 1894 3 173,148,93, 104,277,425, 511,1568,1801, 343 0 0 0 0 0 2 969 - SGN-E335212 521 0 343 C00SLf0138K20.2 19776 511 1823 3 173,148,22, 178,351,499, 511,1568,1801, 389 15 0 0 0 0 2 969 - SGN-E344038 671 6 410 C00SLf0138K20.2 19776 511 1884 3 173,148,83, 261,434,582, 511,1568,1801, 403 18 0 0 0 0 2 969 - SGN-E344495 790 0 421 C00SLf0138K20.2 19776 511 1901 3 173,148,100, 369,542,690, 511,1568,1801, 403 18 0 0 0 0 2 969 - SGN-E343128 593 0 421 C00SLf0138K20.2 19776 511 1901 3 173,148,100, 172,345,493, 511,1568,1801, 363 9 0 0 0 0 2 969 - SGN-E345597 659 4 376 C00SLf0138K20.2 19776 511 1852 3 173,148,51, 283,456,604, 511,1568,1801, 411 0 0 0 0 0 2 969 - SGN-E343530 695 0 411 C00SLf0138K20.2 19776 511 1891 3 173,148,90, 284,457,605, 511,1568,1801, 315 8 0 0 1 1 1 884 - SGN-E345983 615 0 324 C00SLf0138K20.2 19776 511 1718 3 173,54,96, 291,464,519, 511,1568,1622, 355 9 0 0 0 0 2 969 - SGN-E345855 698 0 364 C00SLf0138K20.2 19776 511 1844 3 173,148,43, 334,507,655, 511,1568,1801, 414 0 0 0 0 0 2 969 - SGN-E347730 573 0 414 C00SLf0138K20.2 19776 511 1894 3 173,148,93, 159,332,480, 511,1568,1801, 421 0 0 0 1 3 3 970 - SGN-E347901 714 0 424 C00SLf0138K20.2 19776 511 1902 4 173,96,51,101, 290,463,562,613, 511,1568,1665,1801, 350 9 0 0 0 0 2 969 - SGN-E340012 617 0 359 C00SLf0138K20.2 19776 511 1839 3 173,148,38, 258,431,579, 511,1568,1801, 419 0 0 0 0 0 2 969 - SGN-E340796 680 0 419 C00SLf0138K20.2 19776 511 1899 3 173,148,98, 261,434,582, 511,1568,1801, 414 0 0 0 0 0 2 969 - SGN-E339085 675 0 414 C00SLf0138K20.2 19776 511 1894 3 173,148,93, 261,434,582, 511,1568,1801, 228 6 0 0 0 0 1 884 - SGN-E353700 662 0 234 C00SLf0138K20.2 19776 511 1629 2 173,61, 428,601, 511,1568, 228 6 0 0 0 0 1 884 - SGN-E352689 779 0 234 C00SLf0138K20.2 19776 511 1629 2 173,61, 545,718, 511,1568, 41 1 0 0 0 0 0 0 - SGN-E355341 646 0 42 C00SLf0138K20.2 19776 511 553 1 42, 604, 511, 38 0 0 0 0 0 0 0 - SGN-E356643 604 0 38 C00SLf0138K20.2 19776 511 549 1 38, 566, 511, 109 2 0 0 0 0 0 0 - SGN-E356899 673 0 111 C00SLf0138K20.2 19776 511 622 1 111, 562, 511, 48 1 0 0 0 0 0 0 - SGN-E694184 786 0 49 C00SLf0138K20.2 19776 511 560 1 49, 737, 511, 348 6 0 0 0 0 2 969 - SGN-E358622 533 0 354 C00SLf0138K20.2 19776 511 1834 3 173,148,33, 179,352,500, 511,1568,1801,