<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 13:40:20"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E336128" ref_strand="+" ref_description="SGN-E336128 [cTOE-12-E23]">
      <seq>aggcggttctggttgaagatattgtacatacttcaaaggcatggtgctaaagtgttattggaggtaggactatggaagcgcggaatcattgaacacacaaaatctgcttcatgcaaacagtgcttattcaatccataaaaatatgcctctcccatgggacaagaaattgatcaggtctggtttatcatcactctaatgattccttcagtggcacagctctggattacatctataatgatggttatagaacctagctgctcttgacaaccattccgtggtagtatagaatgccaacgagctccgcctgaacgtggcgcataggtgattctttgatttcattctgccataggaagttcatcatttgatggcagatgtaatatagctttccttatttaacttgagctagcttgcagtggggagggaggtagaactagcctttttgttaaaaagtaaaaattattttgctcccttctactccatgagttctcaaactggattttggttctgtggatgtttctcttatatttataatatataatatgatatacatattaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0008K08.1" temp_strand="+" temp_description="C00HBa0008K08.1  CU928482.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0008K08 sequenced_by:sanger upload_account_name:uk">
        <position start="3213" stop="4376"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="3513" g_stop="4075" g_length="563"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="563" r_length="563" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0008K08.1" gen_strand="+" ref_id="SGN-E336128" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0008K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E336128" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="3513" e_stop="4075"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGCGGTTCTGGTTGAAGATATTGTACATACTTCAAAGGCATGGTGCTAAAGTGTTATTGGAGGTAGGACTATGGAAGCGCGGAATCATTGAACACACAAAATCTGCTTCATGCAAACAGTGCTTATTCAATCCATAAAAATATGCCTCTCCCATGGGACAAGAAATTGATCAGGTCTGGTTTATCATCACTCTAATGATTCCTTCAGTGGCACAGCTCTGGATTACATCTATAATGATGGTTATAGAACCTAGCTGCTCTTGACAACCATTCCGTGGTAGTATAGAATGCCAACGAGCTCCGCCTGAACGTGGCGCATAGGTGATTCTTTGATTTCATTCTGCCATAGGAAGTTCATCATTTGATGGCAGATGTAATATAGCTTTCCTTATTTAACTTGAGCTAGCTTGCAGTGGGGAGGGAGGTAGAACTAGCCTTTTTGTTAAAAAGTAAAAATTATTTTGCTCCCTTCTACTCCATGAGTTCTCAAACTGGATTTTGGTTCTGTGGATGTTTCTCTTATATTTATAATATATAATATGATATACATATTAAAGATGATA</genome_strand>
        <mrna_strand>AGGCGGTTCTGGTTGAAGATATTGTACATACTTCAAAGGCATGGTGCTAAAGTGTTATTGGAGGTAGGACTATGGAAGCGCGGAATCATTGAACACACAAAATCTGCTTCATGCAAACAGTGCTTATTCAATCCATAAAAATATGCCTCTCCCATGGGACAAGAAATTGATCAGGTCTGGTTTATCATCACTCTAATGATTCCTTCAGTGGCACAGCTCTGGATTACATCTATAATGATGGTTATAGAACCTAGCTGCTCTTGACAACCATTCCGTGGTAGTATAGAATGCCAACGAGCTCCGCCTGAACGTGGCGCATAGGTGATTCTTTGATTTCATTCTGCCATAGGAAGTTCATCATTTGATGGCAGATGTAATATAGCTTTCCTTATTTAACTTGAGCTAGCTTGCAGTGGGGAGGGAGGTAGAACTAGCCTTTTTGTTAAAAAGTAAAAATTATTTTGCTCCCTTCTACTCCATGAGTTCTCAAACTGGATTTTGGTTCTGTGGATGTTTCTCTTATATTTATAATATATAATATGATATACATATTAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E268612" ref_strand="+" ref_description="SGN-E268612 [cLEI-13-D18]">
      <seq>gccagtcggtgttcggaactttttcattgatggttaactttggggcaaattgcgtttaatacagacggagccttggattggagctgtttcttgggcttttgtctcccttcccaacataaaacttgacttgtcaccgttccgcttgttcaacctaatggcaatatcctgttctatcaatgttgctgaagaagcttcttactgaggatttacctcgtctctttgtccgtccaaaaaaaattgtgttggattttcataaagggaaaacagtcgggcctattacaagtgatcgtaagtctggtcagagcgaacaacctaaggctggggaaatgctagaaggaaataaggactatgctggagaactatcagtgactcttgttgatgcaaggaatctctcttatatcatctatggaaaaactgatccatatgttaatctaagacttggagatcaagttatacgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0008K08.1" temp_strand="-" temp_description="C00HBa0008K08.1  CU928482.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0008K08 sequenced_by:sanger upload_account_name:uk">
        <position start="13449" stop="8909"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13149" g_stop="12992" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="158" r_length="158" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="12991" i_stop="11431" i_length="1561">
            <donor d_prob="0.774" d_score="0.96"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="11430" g_stop="11412" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="159" r_stop="178" r_length="20" r_score="0.895"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="11411" i_stop="10709" i_length="703">
            <donor d_prob="0.997" d_score="0.00"/>
            <acceptor a_prob="0.853" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="10708" g_stop="10479" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="179" r_stop="408" r_length="230" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="10478" i_stop="9259" i_length="1220">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="9258" g_stop="9209" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="458" r_length="50" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0008K08.1" gen_strand="-" ref_id="SGN-E268612" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0008K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E268612" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13149" e_stop="12992"/>
          <exon e_start="11430" e_stop="11412"/>
          <exon e_start="10708" e_stop="10479"/>
          <exon e_start="9258" e_stop="9209"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCAGTCGGTGTTCGGAACTTTGACATTGATGGTGAACTTTGGGTCAAATTACGTTTAATACAAACAGAGCCTTGGATTGGAGCTGTTTCTTGGGCTTTTGTCTCCCTTCCCAAGATAAAACTTGACTTGTCACCGTTCCGTTTGTTCAACCTAATGGGTATGTGAATTTCGACTTGGGACTTTTACCTACGAGATGAATCATGTGTCAGAATCTTGCATGCTATAAGTTTTATATAGGCAAAATACCAAATACATGAGAAGTAAATTATAGTCATATTAGTATGTTACTTGAAGCCCAATATTTCTTAATGAGTCTCTTAGTCCCCTCAAATATTCATATGCTAGTAGAAAATACAGAGAATTTCTTGTGCTTTTTTGTTGTGATTTTTCTGAATTTTATTTGAAAGATAATGGACTAAGATGAGCGTAAAAGAACAGCGAATTCATATAACTTGCTTGGGATTGAGTCGTAATAGTTGTTGAGTGCCCAGCTGATTCACACACTAAACACTGTTTTAAAGTTGCTTTCTTTTGATAAGAGACTGTTTCGAAGCTGATTTATTCATGATTTATATATCTGTTTACACCCAACTGTTGTGTTCAATTTGTTTCTTCTGGAAGAAAATAGCTTTTGATTCCGTTGAGTGCTCAATTCTTAGAAAAGAGTAGGAGCCCATTTGGATTGGCTTATAAAAAGTAACTTTCAAGTCAAAAATAAAAAGTCAAACTTAAATAACTTTTAAGTCGATATTACTAATCCAATGCAGAAAGTAAAAGAAAACTGCATTAATACTATGTATCTTTGGTGTAAAGAAGAGGGTATAGATGAGGTAGAACAGCCAGTAGACTTCTCAGATTATCTGTAATTATGATTACTTGCACTGTAATTTTTTTGATGGTTGTCAGCATACTGAGGAATACAACTTTACCTTTCTAAAAAAAAATAAAAATTTTAAGTCGAAAATAAAAAGTAGGGGGAAGCCTACTTTTGGTTTTTAACTTATTTTAAGTCATTTCTAACTTATTTTCATTTATTTTTAACCTTGCCAAAAACTTCCGAACTTATTTTAAGTTATTTTTATATTTGTACATTTCCTTAAGTCAGAAACTGATTTAAAAGTAGATTTGCCCAACTTTTAAGCCAATGCAAACACCCTGTTAATCATGGGTCGTCAAATTTTGATCACTGGAACATATTCTGTAAGACAGTGGAATGACTCCATAGAGTTTATTCTTTTCAAGAATGAACTTCATGGAGTTTATTCTTATCGGGTACTTCAATGTAATTTTAGGAACCTAATTCAAGTCGTTAGCAACTATTTGGCGTACTGTGAAGACTACGAAACATATTTGCTTTCTTCTTTATCTTGTTTTCTTTGCTGCTCTGTGTAATCCTCTTTGTGGTATCAGCTTCCAAGACTAGCATTCTTCTGCCATTAAACCTAATTTTAGGATTAGTTAATACCCCGCTTCTTCTAGTTGAGTTGCTGTGTAGTGAGATCTTTCCAGTGCATAGTTATCAATTATTTATTACTACTGATGCTGAGTTGTCATCATTTCAATGACTGCTGTTTGTTTTCTATTTACACTTTTTAAAATGGGATAGTGATACCTAAAGTTAAACGAATAAACTAGATGAGTAATATTATTGATGTGCCCATTATGAGGATCTTGACATGTTTCTTTTCTTTTTCTTGCATGTATTGGGGAAACACCAGCAAT-TCCTGTTCTATCAATGTAAGTACTATTTTATCCATTATCTGCTGTTCTTATTACCTATGTGCTTTCCACTTCTGTTTGTTATCCCCCATCGTTGGTATATCCAATTTCTTGTGCTGTTTAATTAGCATCTCATTGAAGAGTCCCTTTTCTTGTTTTTTCCTTTGGGTGATGGGTGGGTTGGGGGGTGAAGTGTGACTGATCACTGAATAATGCTTTACCAGGCCACTTACACTCCTAGCTTATGCAGTCAAATATCCTTTTTCTGTTTTAAAGCCCCTTTTGCTTTTCAGTAGATATGGTCATGGTATTGTCATCAATCATGAATGATTTTTCTTGAGAATCTTCCTTATTCACCTTATTCTGGATTTCTGAAGTTGCTTCTAGTTAGGCACCTCGTGTTATGTATTCCGAGGATGTTCACTCTCTCTCTATCTCTGCCCATTTTCTTCCCTAATTTTGGGAAATCTCTTGTCTTGTGTCAAGTCTCTTATTTTCAGCTCAAGTTAGTTTCATTTACATGCTCTACAATAATGGCTGCATTTGGTGTTTTAGCACATATCATCTTTAAAGTTAATTCCAGGCCTAGATCTTTCTAGCATCATATTAATTCTGAATTTCTTGCCTGATGCGTTTTCGATTTGCAGTACTCTATGGAACTATTTCATTTTTCCACTGCAGTGGTGGGTTTGAGTTCTTATATCTTCTACGGATATTTCAGGTTTTTGAAGAAGCTTCTTACTGAGGATTTACCTCGTCTCTTTGTCCGTCCAAAAAAAATTGTGTTGGATTTTCAGAAAGGGAAAACAGTCGGGCCTATTCCAAGTGATCGTAAGTCTGGTCAGAGCGAACAACCTAAGGCTGGGGAAATGCAAGAAGGAAATAAGGACTATGCTGGAGAACTATCAGTGACTCTTGTTGATGCAAGGAATCTCTCTTATATCATCTATGGTATGAATATGTTCATCTTTCATCAGTGGCATCAATCTTTTTCTTAGGTCTGATATTTTGCTTTTTAGTAACACTAGAAACTTGGCATCAATCTTTTTCTTAGGTCCGATATTTGCCTTTTAGTAACACTAGAGACTTGTCATGCACTATGAACTATTAAATGAGTTCGTCTCTTCATATTATTTAAAAGTTAAAACTATTCTGTAGCATATTCTAGTTTGTGAAAGAAAAAGGTCAGAGGTATTTATTTACTTGAAAATCAGTTGAAGCTTCAAAAGAATGTGTTTTCCATTGCATGAGCAACTACTTTTAAGTGAATATAAAATCCACATATATTGGTCCAGTAATCACTGTGAACCAGTTAAAATATAATAATTACTGGATGAAATCACTGGGGCAGCCCGGTGCACAAAGCGTCCTCCATTAATATATTCAGTGAAGGGACGCACCCTAAGATTACCGAATCAAAATCACAGATATAGGAAAACCGTACCAAATGAAATCACATTATAAAGGAGGAAATGCGAAGACTTTCGACTATGCTTTCTAACAAATACAACGACGACAACAACCTACCCAGTGTAAAACCAGAAGTGGGGTCTGGGGAGAGTAATATGTACACACACCTCCCCCTGCGTTTGTAGGGTAGAGAGGTTGTTTCAGATGGACACTCGGCTCAAAAGCGAAGTTATTCGGAGAAGGGGTGCCAGAAAAAATTACAGCAAAATATCAAGGTACAAAGTAAAATGAAGCAACAGAATAAAGAAAACACATTGAAGAATAAGAGATTACACGAATTACTAAATACACATTAAAGATGTTTAGATCAGGTTATCACATCAAACTGTAATTGGGAAAAGAAAACTTTTTGGCACAAGGATCTTATTTTTTCTTTTTAGTTTGTGTGTGTCGTAAATGTCATAGTTAATAAAAGCTAAAAGGGAAGAAATAAGTTGCCTATGAAAAAAAATGTAAAGCAAAAACGAGGATGGGTCCAAAAGTTTCTGCTGCTACACCTCCAGTTCATGTATACATTATACGGTATGTTTAGTTCGCATGATTCTCCTGTTAAGCTGCAAGTTCAATTTTTAGATGGAAGTTTTTCGCCTTCATTACTCAGTTTTATGAATGATAGATACTAGTGCTTTTCTGTACATGTAATGTCCTCTTATGTTTCCCATGTCTGTCTTTTTTAAATTTCCCTGTCCTCTATTGTTCAGGAAAAACTGATCCATATGTTAATCTAAGACTTGGAGATCAAGTAATACGC</genome_strand>
        <mrna_strand>GCCAGTCGGTGTTCGGAACTTTTTCATTGATGGTTAACTTTGGGGCAAATTGCGTTTAATACAGACGGAGCCTTGGATTGGAGCTGTTTCTTGGGCTTTTGTCTCCCTTCCCAACATAAAACTTGACTTGTCACCGTTCCGCTTGTTCAACCTAATGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATATCCTGTTCTATCAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTGAAGAAGCTTCTTACTGAGGATTTACCTCGTCTCTTTGTCCGTCCAAAAAAAATTGTGTTGGATTTTCATAAAGGGAAAACAGTCGGGCCTATTACAAGTGATCGTAAGTCTGGTCAGAGCGAACAACCTAAGGCTGGGGAAATGCTAGAAGGAAATAAGGACTATGCTGGAGAACTATCAGTGACTCTTGTTGATGCAAGGAATCTCTCTTATATCATCTATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAACTGATCCATATGTTAATCTAAGACTTGGAGATCAAGTTATACGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E707182" ref_strand="+" ref_description="SGN-E707182 [FA32BB07]">
      <seq>ccattttaggagcttgtaatgttgttttcggttctctttgaaacagataaagctttgagcgaattgggttttgggtttggattcatgtttattggtagttcattgtatacttcaagttcaacaactgttaattatagctcaaaaggcatctgggtttttgatattaatggtttttgaatcagtttctgctattacccctgatttccgtaaagtattttgggtatacccatctccttgtccatgtaaaagtaatggcagttcgtcggtgacgaggaggaggagtagggggaaattgggtttggattcgagtgttaggtataggattcgtgcgaaatgggtaattcgagcttgtgtgaatggtggagaccaccatagttttgacatgcagattagggatagtgctagaagaggagctagaaatattgtaattaagagatttgctgatgaattggatgcttatggaagagtctctgaggaattagaagcttctagatgttctagtaacaattttgctagttttcaagaagaccctattgtagataagctaaggactcaattgggggtgatgcatccattaccttctcctccaataaatcgaaatattttcggtctttttgcattgtttttctttgttggtgttgtttttgataaggtttgggcatctagaaagagtaatgctaagccaaaaaatggaggaaactccgggatatggtcacaggtcccaccaaacctttcttcattgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0008K08.1" temp_strand="-" temp_description="C00HBa0008K08.1  CU928482.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0008K08 sequenced_by:sanger upload_account_name:uk">
        <position start="15118" stop="13786"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14816" g_stop="14086" g_length="731"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="743" r_length="731" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0008K08.1" gen_strand="-" ref_id="SGN-E707182" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>731</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0008K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E707182" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14816" e_stop="14086"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTAATGTTGTTTTCGGTTCTCTTTGAAAAAGATAAAGCTTTGAGCGAATTGGGTTTTGGGTTTGGATTCATGTTTATTGGTAGTTCATTGTATACTTCAAGTTCAACAACTGTTAATTATAGCTCAAAAGGCATCTGGGTTTTTGATATTAATGGTTTTTGAATCAGTTTCTGCTATTACCCCTGATTTCCGTAAAGTATTTTGGGTATACCCATCTCCTTGTCCATGTAAAAGTAATGGCAGTTCGTCGGTGACGAGGAGGAGGAGTAGGGGGAAATTGGGTTTGGATTCGAGTGTTAGGTATAGGATTCGTGCGAAATGGGTAATTCGAGCTTGTGTGAATGGTGGAGACCACCATAGTTTTGACATGCAGATTAGGGATAGTGCTAGAAGAGGAGCTAGAAATATTGTAATTAAGAGATTTGCTGATGAATTGGATGCTTATGGAAGAGTCTCTGAGGAATTAGAAGCTTCTAGATGTTCTAGTAACAATTTTGCTAGTTTTCAAGAAGACCCTATTGTAGATAAGCTAAGGACTCAATTGGGGGTGATGCATCCATTACCTTCTCCTCCAATAAATCGAAATATTTTCGGTCTTTTTGCATTGTTTTTCTTTGTTGGTGTTGTTTTTGATAAGGTTTGGGCATCTAGAAAGAGTAATGCTAAGCCAAACAATGGAGGAAACTCCGGGATATGGTCACAGGTCCCACCAAACCTTTCTTCATTGT</genome_strand>
        <mrna_strand>CTTGTAATGTTGTTTTCGGTTCTCTTTGAAACAGATAAAGCTTTGAGCGAATTGGGTTTTGGGTTTGGATTCATGTTTATTGGTAGTTCATTGTATACTTCAAGTTCAACAACTGTTAATTATAGCTCAAAAGGCATCTGGGTTTTTGATATTAATGGTTTTTGAATCAGTTTCTGCTATTACCCCTGATTTCCGTAAAGTATTTTGGGTATACCCATCTCCTTGTCCATGTAAAAGTAATGGCAGTTCGTCGGTGACGAGGAGGAGGAGTAGGGGGAAATTGGGTTTGGATTCGAGTGTTAGGTATAGGATTCGTGCGAAATGGGTAATTCGAGCTTGTGTGAATGGTGGAGACCACCATAGTTTTGACATGCAGATTAGGGATAGTGCTAGAAGAGGAGCTAGAAATATTGTAATTAAGAGATTTGCTGATGAATTGGATGCTTATGGAAGAGTCTCTGAGGAATTAGAAGCTTCTAGATGTTCTAGTAACAATTTTGCTAGTTTTCAAGAAGACCCTATTGTAGATAAGCTAAGGACTCAATTGGGGGTGATGCATCCATTACCTTCTCCTCCAATAAATCGAAATATTTTCGGTCTTTTTGCATTGTTTTTCTTTGTTGGTGTTGTTTTTGATAAGGTTTGGGCATCTAGAAAGAGTAATGCTAAGCCAAAAAATGGAGGAAACTCCGGGATATGGTCACAGGTCCCACCAAACCTTTCTTCATTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265725" ref_strand="+" ref_description="SGN-E265725 [cLEI-11-O21]">
      <seq>tggtatgctgctgtatttggaactataacagctataagccgggctgcaataacagatgagcttcttgtccttgacccacagggagcaatgtcacttgttgtccaacatacacactttatgccaaagagatggcgagggaaagaaaatactgaggccatacgaacagagtttgaaactttattccagtatactggaatgatgttactagaggagatgacctcaatttttcttacaccatatctgctgctatttgatgtcccaaagaaggtacatgatattttgcgcttcattgcggacttcactgttcacgttgagggtgttggtcatgtgtgcagcttcagcgtgtttgattttcataatcatggcaatcgcaaatatggatcaccatttaattcttgcggcttgcgaagaaattctcaagggaaaatggagaaatcattcctaagctttcaaactagctatccttcctggcaacctgatgatcatggaaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0008K08.1" temp_strand="-" temp_description="C00HBa0008K08.1  CU928482.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0008K08 sequenced_by:sanger upload_account_name:uk">
        <position start="21333" stop="18251"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21033" g_stop="20848" g_length="186"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="186" r_length="186" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20847" i_stop="19134" i_length="1714">
            <donor d_prob="0.873" d_score="1.00"/>
            <acceptor a_prob="0.965" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="19133" g_stop="19056" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="264" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="19055" i_stop="18973" i_length="83">
            <donor d_prob="0.899" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="18972" g_stop="18902" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="335" r_length="71" r_score="0.986"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="18901" i_stop="18795" i_length="107">
            <donor d_prob="0.989" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="18794" g_stop="18684" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="446" r_length="111" r_score="0.955"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="18683" i_stop="18599" i_length="85">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.948" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="18598" g_stop="18551" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="447" r_stop="494" r_length="48" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0008K08.1" gen_strand="-" ref_id="SGN-E265725" ref_strand="+">
        <total_alignment_score>0.982</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0008K08.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E265725" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21033" e_stop="20848"/>
          <exon e_start="19133" e_stop="19056"/>
          <exon e_start="18972" e_stop="18902"/>
          <exon e_start="18794" e_stop="18684"/>
          <exon e_start="18598" e_stop="18551"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTATGCTGCTGTATTTGGAACTATAACAGCTATAAGCCGGGCTGCAATAACAGATGAGCTTCTTGTCCTTGACCCACAGGGAGCAATGTCACTTGTTGTCCAACATACACACTTTATGCCAAAGAGATGGCGAGGGAAAGAAAATACTGAGGCCATACGAACAGAGTTTGAAACTTTATTCCAGGTGCTTTTTTGCCGTGTGGTTTCTTATAAGCAAATAAATGTGAAAACAGACACTTCGTTGAAGTAACTGAAGTCTTGGTTTATGGATTTCCTATTTTCATTTAGAGCATATTATTAGTTTTTCCAGGAAAGTCATTTATAATTTATATAAAATTAAACTAATAAAATACCACAGTTGATTCGTTAAACAATTAATTGTAGAGCTAAATGTAATATTTTGCTTCAATAGAGTGTAATCATATAGAATGAATTCAGACAAGGCAGACCATCATCAATTCATTCATGAGCTCTTTTGTGTGAATTCAAAGTTACCTATTTCAGAAAAAAACAAGGCAGACCATTGTCATGATTTTTTCTTCATTCCACTTTTTTGGCAGTTTATCCTTCTTATTTCTTTTTATGTTTCTTTGATTGAGGGTGGGTTACTTTTTATTTATTAGATTCGAAGTTTGACTCTGCTGCATAGCCTTCTATATTTTAACTTCCTTCTTAATTTTTTTGTAATTTATCACAAAGTTTTGTTCGTAATGTAGCTCCAGCTGTAGGCTTTTTCAATACCTTTACTGTATTCTTCTCCGGAATTTTATTTTTTTATTTTTTAGAGAAGAATTTCCTAGATATATAGCCAGGTTATGCAAGAGCTTTACTGTTGACGGATATATTGTGTAGTATTTCATTACCTTATGCGCACCCAAAGGGTAGCGGCTGCGGGTTTCCCTTGTCATCAAAAAAGATTGTGTGGTATTTCATTTTACCATGAGATTGTTATGGACTTCTTCTTATGCAAGAGAGAAAGGTTCAAGTATCTTGGGTCCATAATTCAAGGAGACAGGTCGATCAACGATGATGTCGCACATCGTAGTGGAGAGGGATGGGTGGAGTAGAGACTTGCCTCTGGGTACTGTGCGATAAAAATGTGTCATCAAGGCTTACAGTAAGTTCTACATAGTGGTTGTTAGACCAACACTAATTGTATTAGGTAGAGTTCCAACTAGTCAAGAATGCCCACGGTCAGAAGATGAAGGTAGCGGAGATGAGGATGCTCACATGGATGTGTGGGTATATTAGGAGAGATATGCTTAAGAACAAAGATATATGGGACAAGGTGGGAGTGACCTCCGTGGCTGACCAAATGAGGAAAGTGAGGCTGAGATTATTCATACATGTGAAGAGGAAGATTGAGGATGCGTCAGTGAGGAGGCGTGTGAGGTTGGTTGAAGGCTTGTAGCATGAGTTAGGATAGGTAGAGGTAGGCCAAAAGAATTGGGGGACGTGATTAGCCTGGACATGACACAATTTCAATTGACTAAGGACTTGACCTTAGATAGAAAGGTCAAGGATTAAGGTAGAAGGTTAGTAGGTAGTTGAATTCTGTTTTACTTCTAGTAGTATGTTTTAGGTATCACGTAGTTCCTTTTTTCTCCAAAGTGTATTAATGTATGTTCTGCACTTGTTTTTCACATTGCTATTTTGCTGTCTCCTTTCTTACTTACTTTTCCTACGTTGGTTACATTTCTTTTGAGCTGAGGGTTTGTCGGAAACAACCTCTCTACCCCGCAGAGGTTGAGGTGAGGTCTGCACACATCTTACTCTCCCTAGACCCCAATTGTTGTTGCTGTTGCTTTATGCAAGTGTCTCACTGTCAATGGCTAAATGGGGTAGTACTTCATTTTACGGTAAGATTGTTATTGACTTCTTATTAACTCATCCTGCAGTATACTGGAATGATGTTACTTGAGGAGATGACCTCAATTTTTCTTACACCATATCTGCTGCTATTTGTTGTCCCAAAGGTGATCTTTATTTTTAAGGATAATTTCCTCATCTACCTAGCTTGAGTTAATGGTCGCTGACATTTGGATGTTTTTTGTAACAGAAGGTAGATGATATTTTGCGCTTCATTGCGGACTTCACTGTTCACGTTGAGGGTGTTGGTCATGTGTGCAGGTTAGTAATTATATCAGCTTTGCTTGGATCTTCACATGTTGGTAGCTCCTATTGACAGAGCTCCCACATTTCAATCTTCAAGCACTGATTTATGTCTCTCTGGGCAGCTTCAGCGTGTTTGATTTTCAGAATCATGGCAATCGCAAATATGGATCACCATTTAATTCTTCCCGCTTGCAAAGAAGTTCTCAAGGGAAAATGGAGAAATCATTCCTAAGGTTGGTCTTATAATTACTTGAGGCTGTTTTGAATTATTGTTGATTTAAGAGCTTTCAAATAACAGTACATGTCAAATGGTTTCAGCTTTCAAACTAGCTATCCTTCCTGGCAACCTGATGATCATGGAAAACA</genome_strand>
        <mrna_strand>TGGTATGCTGCTGTATTTGGAACTATAACAGCTATAAGCCGGGCTGCAATAACAGATGAGCTTCTTGTCCTTGACCCACAGGGAGCAATGTCACTTGTTGTCCAACATACACACTTTATGCCAAAGAGATGGCGAGGGAAAGAAAATACTGAGGCCATACGAACAGAGTTTGAAACTTTATTCCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACTGGAATGATGTTACTAGAGGAGATGACCTCAATTTTTCTTACACCATATCTGCTGCTATTTGATGTCCCAAAG...................................................................................AAGGTACATGATATTTTGCGCTTCATTGCGGACTTCACTGTTCACGTTGAGGGTGTTGGTCATGTGTGCAG...........................................................................................................CTTCAGCGTGTTTGATTTTCATAATCATGGCAATCGCAAATATGGATCACCATTTAATTCTTGCGGCTTGCGAAGAAATTCTCAAGGGAAAATGGAGAAATCATTCCTAAG.....................................................................................CTTTCAAACTAGCTATCCTTCCTGGCAACCTGATGATCATGGAAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E342186" ref_strand="+" ref_description="SGN-E342186 [cTOF-10-D8]">
      <seq>aacagttgtggaagtggaagaagacagtattgataaacccatggcgacggcaacaaggcccggtgtcccaaagtcggcagctatttccaaaggctacaatttcgcttctacttgggaacagaatgctccgttaacagagcaacaacaagcagccatacaagcactttcccatgcagttgctgagagaccttttccgtccaatttggtgaattattccttcttggttggtttcagaatacatctatctcaaactcaaattacttgtttttatttcaatttccaggatcaagtttctggacacgataacagtttctctgtctcaacaaaactcaattctatggaggattcaggggccattgaagcagtccttgtgaatacaaatcagttctacaagtggtttgcagatcttgaagcagccatgaaatcagagactgaagaaaaatatcagcattatgtcaacaccttaacagagcagattcagacctgcgatagtatacttcaccaggtggatgaaacacttgacttattcaatgagctgcagttgcagcaccaaacagtggcaacaaagactagaacccttcatgatgcgtgtgatagactgcttttggagaagcagaaattaattgagtttgcagaatcacttcacaaaaagctcaattactttgatgaattggagaatgttgcaaccactttttattctcctagcatgagtgttggntagtacaaattttctaccattgcttaaaagacttgatgaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0008K08.1" temp_strand="+" temp_description="C00HBa0008K08.1  CU928482.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0008K08 sequenced_by:sanger upload_account_name:uk">
        <position start="28526" stop="34003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28826" g_stop="28946" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="121" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28947" i_stop="29747" i_length="801">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29748" g_stop="30011" g_length="264"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="385" r_length="264" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30012" i_stop="31641" i_length="1630">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="31642" g_stop="31686" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="430" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="31687" i_stop="31802" i_length="116">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31803" g_stop="31877" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="431" r_stop="505" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31878" i_stop="32001" i_length="124">
            <donor d_prob="0.809" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="32002" g_stop="32097" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="506" r_stop="601" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="32098" i_stop="32604" i_length="507">
            <donor d_prob="0.419" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32605" g_stop="32682" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="679" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="32683" i_stop="33623" i_length="941">
            <donor d_prob="0.932" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="33624" g_stop="33703" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="680" r_stop="760" r_length="81" r_score="0.975"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0008K08.1" gen_strand="+" ref_id="SGN-E342186" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0008K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E342186" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28826" e_stop="28946"/>
          <exon e_start="29748" e_stop="30011"/>
          <exon e_start="31642" e_stop="31686"/>
          <exon e_start="31803" e_stop="31877"/>
          <exon e_start="32002" e_stop="32097"/>
          <exon e_start="32605" e_stop="32682"/>
          <exon e_start="33624" e_stop="33703"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AACAGTTGTGGAAGTGGAAGAAGACAGTATTGATAAACCCATGGCGACGGCAACAAGGCCCGGTGTCCCAAAGTCGGCAGCTATTTCCAAAGGCTACAATTTCGCTTCTACTTGGGAACAGGTTCATCCTCTGTTTTCCTTTTTCCCATTTTTTACAGTGATCACATTTTCTCCAGATTTACTAGATCTGTCTGAATGCATAACAAAAGTTATGTTTGATGACTGCATTGCACTCATCGCTGCGTAAATTAATGAATATAGTGAAGTGCTGTTTGAAAAAGAGAATCACAATATTTGGTTTGATGTATTGCTGGACTTGTTGGATTCGTTGCAGATTAAGAGAATCCTTTCCAGCAAATGTATTGGTACTGAGTTTCATGAAATTTTCACTGACCAAAAAAATAAAAAAAAAGAGAAAGAAAAGGGTGTCAAAATTGTTTCTTTGTGTGATGTGATGAAGTTCTCTCATTTAATTTCAAGCCTGTGTTTGTTTGTTTGTTGCCTCGTTTCGATGAAAGGATTTAGCAGCTTGTAATTGTGTAGCATATTCTCAATTAAACTATCTTTTCATGTTTTATTCTCATTGTAATGTGACATTGCTTCTCTTTTTCCTCGTTGGCTAACTAGCTGTTTTCTTATCTACTGACACTTTTAGTTTTAGCTTGTTCTTGCTATTACTATTGGAAAATCACCTTATCAGTACTCACCTCCATCATGGATTTGATCTTTTATTTTTTGCGTTTGTTGGCCCTCAACATGTCAAAGTATATTGTTTGTATTGATAGAAAGAATTGTTTGTATGTATGTACATGTGTCTATTTCAGGTCTATTGAAAGTTATTCCTTTAGATTAACTAAATCCGCATTAGTGGCTATCTTGATGTTTATATCTTCAACGACTTGAGCTAGTTTTCTTCTTACAGAATGCTCCGTTAACAGAGCAACAACAAGCAGCCATACAAGCACTTTCCCATGCAGTTGCTGAGAGACCTTTTCCGTCCAATTTGGTGAATTATTCCTTCTTGGTTGGTTTCAGAATACATCTATCTCAAACTCAAATTACTTGTTTTTATTTCAATTTCCAGGATCAAGTTTCTGGACACGATAACAGTTTCTCTGTCTCAACAAAACTCAATTCTATGGAGGATTCAGGGGCCATTGAAGCAGTCCTTGTGAATACAAATCAGGTGAGTTACTTTTGCGAGTGGAGTCGAGTTTCTCCCATTTGAGGGGCAGTCTCTGTTCCCTTACTTCCTTTTGGTGCACGCAGAGAGTACCTTGTATAAATGATTGGGTGGAGTTTGTAGACAATTATATCTTGTTGTAGATGCTTTACTGTTTGGAATAGCCCTGGTATATGGCCAATTTGCCCATGATTATGAATGAAAAAATATTACCTGAATAAAAAAAACAATGTTTAGTTGGCACATCCTTTATTTTTTACATTTCCAGGTTGCAGATCTTAATATTCCATATTTCAAATAAGGGATCATGGATGATTTATTCCCTTATCAAAAAGGTTACATGGTCAGCTAAATGTTGGCAAGGAATCAAAACTAATAACATCTTGCAACCAATGCTAAAATATAGAGATATATTTGTGTAAGACTATAAAGTTGTAGTGTCTTGTACTCAGTGACTCATCAGCCACACATAACTGCTAAACCAATGAATATTTTTTATGATAAGGTAACTGCTAAATTGATGAGTTGAACAGAAGGCCTGATAATTGCTTGTTAAGAAGCCCCATCCATTGTTTTGGCTTACTAGATAATATGCCTCTCATTTTGGTTCTGATGATTGTCATTAACTAAAGAGGAAACGCCTTATGCTGGGCAAAGAATGACTAGAACTCACATTTAGTGAGAAATGATAGTCAATGTCTTCTGGGGTAGGAATAGCAAAATTGCATGGAATGTGTTCAGGGATGATGACCATAGTGGCTGTTTATGGCCTGGACCCTACCTGCTTGAGTAGAACAGTATTTGTGTCTATATATCAGAAAGACATTCAAAGCAATTTGTTCTAGAACTTCCTCCATATTTGAACTATAGTAGGCCTTCCATGCCATGGAGTTTGTTTTAGATTCTTAATTTGCATGCATGTGAAATGATAGAGATAGCCCTAGAAGTTATTTTCTTTTCTCCTTTCGTTTTATTCTAGGTAAAGAGATTGTCCAATCATTATGAAATATATACCTTGTCACCAAACAAAAGTTCTCTGTCAAAGACATCATTCAACAATTTATACACACAAGAACCTTGTGGGTGCACAAAATTTAACTATAGGAGATGATTTCTCAACCTTACGGAATCATTATCCACCCCTTTCAAAAGACCTACTCTCTCCTTCCAAAGAACCACAAGGGCTAATGGAGCTATATCCCGTGCCTTCATCTTCTTCTCTTCATAGTAAAGCCCCCCAGCTAGTCACACAATGAAGGTATGGTTTTCCATGTGTCTCTTTCCATTTCCGACGCCTTTTCCTGTTCAGTAAAGTCAAATTTCTTCACGGATCTTGGCAATTTGCATGATTCTCTTTACTCCAAAATGTTAAAAGTTACAGTCATAACTGTCAGGCTATTGGGCAGTGTAGTTGGAGTTAATCACCATCGGAATCGCTCGATTAGTACATGTCACTGTCCAGCAGAAGCAATCCACTTAATAAGAAGCTTTAGTTTTCCAAATTCGTTTCCATGGCAATCTTTGTGTTGCATTCTTGTATACGCTTGAATACTGAATATGCTTCCTTTTCTGTAATGCTGCTTGAACTTGATATGCGTTTCCTCTTCCCCTTTGTGCTGTTTTGTTGATGCAGTTCTACAAGTGGTTTGCAGATCTTGAAGCAGCCATGAAATCAGAGGTTGGTCTTAGCTTGTTTATATGTTTTCTGTTTCTTCCAAAAGTTACGACTCACATGCTTCCTCTTTTACACTTGCTGATAAAAAAATATTACATATGCTTTCTTTCTGTGCGTAGACTGAAGAAAAATATCAGCATTATGTCAACACCTTAACAGAGCAGATTCAGACCTGCGATAGTATACTTCACCAGGTATTCTGAGAGGAAAAACAATGCTCATATACTCTTCTCTTAAGCCTTTTTGTTGTTGCTGTTCATCTATCTATGCTTACTTTCGAATGACATGCCCTTACCCTTAAAACTGGCTCCATTGCAGGTGGATGAAACACTTGACTTATTCAATGAGCTGCAGTTGCAGCACCAAACAGTGGCAACAAAGACTAGAACCCTTCATGATGCGTGTGATAGACTGGTGTGTCAACCCATTTCTCTTAGCATGTGGGGTAACTTTAGCTATAGATTGTGCTTTTCTCTTTCATTCTGTATAAAATTTAGAGGAACAAAGGAGCAGATTAACATTAATTGTATGATAAGAGGATACGCTTGTAGCTAATGGAGTTCAATTTTTTGATGGACATAGTTTGCCTTGCTTTATGATGTTGAAAGTCATCATTGCCAATCTACAATATGGATGGATAGTTGCCAAATATCTTTAATTGCCACCTAGTACCAAGTAAATGCATTTCTTCATTTTGCGTTTACTTATTTTTTCTTCTATCTGAAGTGGCTGTTTGGCTTAAAGCATTATCTAGGTACAATTCATGTCGATATTGCATATTTATGATGTCCAGTGGGTGGTATTTGAAACTAGGAAGTTCCCTTTCAGTCTCTTATATTAATGAACATATAAAGAGGTAATAATTAACAACAGGGAGCAGCATTTGAATAATCTTCTTGTGTATTTCTTGTTTATTTGCAGCTTTTGGAGAAGCAGAAATTAATTGAGTTTGCAGAATCACTTCACAAAAAGCTCAATTACTTTGATGAATTGGAGAATGTAACGTCCGACTACCATTTATGTTGATAATATTCCATTTTTATTCAATTCCTTTTGCACTAGTTTCCACAGTAGTCTATCTATGCCTATGCTGAATTGCGTATGGTTCAACAGTCTCCAACATTAGCTTTTTCTGTCATATCCTCATTTTCCTACCCTTAATTTGGGTATCATTTTTCTGATTAGGGTTTGGTTTAGGATTAGGGGGATACGAATGGCCTGCATCAACTATATTTTGGGTGCAGAGAGTTAATGCTATCTATATATATTATGCTTTGATACATTGGTGAGGAAATATACCTAACTGAGAGTTTGAACTTTGAACTATGGAAAACAGCTTTAAGAAGTGAGAGCTTTATGCCTCAAGAGATATATGTTTCTTAATTAGATTTTTTCCACACCCACACAACGGAGGGCAGAGCTTTATTCTTTGTAAATTAAGCTTTGATTTAGATCGTTTTCTTCCTCGTGTTACAAATGAGTCGTCCAAAGCTATTCTTTCTCGTCTTCTCTAATCTAGTGCTTTTGGATTATTTTGACGTGTCTTGCTTAGCAAGTTATTTATTTAAGGTAATTTTTAATCTCGTCTTTTAGTCAACTCTTATTTGTCCTATTTATGTGCTTGTTGGTTTCTAAAGGAAAGCTCTTTTAATTGTGAGATTGAAAATGAGAGTTCCTGTTTTAAATTCCCTATAGAGGAATATGTTTTTCACTCTCCACTGTTGATATTCTTGGTTTAGTTATGCCCATCAGCCTAAAATCTTCAAATGCCTTTTTGTTTAATTACAATTAATTGGGGCATTGCATCAACTTGATTTATCTTGTGCTAAATTTCCATTCAAGTCCTACTCTTCTTATTGAACTTCTCTAAATGTCAAAATACCCAGTTTTCTGTTTTTTTTATTTAGTCCCTCATGGTTGTCTTGCACTCCTGTTTGCAGGTTGCAACCACTTTTTATTCTCCTAGCATGAGTGTTGG-TAGTACAAATTTTCTACCATTGCTTAAAAGACTTGATGAATG</genome_strand>
        <mrna_strand>AACAGTTGTGGAAGTGGAAGAAGACAGTATTGATAAACCCATGGCGACGGCAACAAGGCCCGGTGTCCCAAAGTCGGCAGCTATTTCCAAAGGCTACAATTTCGCTTCTACTTGGGAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTCCGTTAACAGAGCAACAACAAGCAGCCATACAAGCACTTTCCCATGCAGTTGCTGAGAGACCTTTTCCGTCCAATTTGGTGAATTATTCCTTCTTGGTTGGTTTCAGAATACATCTATCTCAAACTCAAATTACTTGTTTTTATTTCAATTTCCAGGATCAAGTTTCTGGACACGATAACAGTTTCTCTGTCTCAACAAAACTCAATTCTATGGAGGATTCAGGGGCCATTGAAGCAGTCCTTGTGAATACAAATCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTACAAGTGGTTTGCAGATCTTGAAGCAGCCATGAAATCAGAG....................................................................................................................ACTGAAGAAAAATATCAGCATTATGTCAACACCTTAACAGAGCAGATTCAGACCTGCGATAGTATACTTCACCAG............................................................................................................................GTGGATGAAACACTTGACTTATTCAATGAGCTGCAGTTGCAGCACCAAACAGTGGCAACAAAGACTAGAACCCTTCATGATGCGTGTGATAGACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGGAGAAGCAGAAATTAATTGAGTTTGCAGAATCACTTCACAAAAAGCTCAATTACTTTGATGAATTGGAGAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCAACCACTTTTTATTCTCCTAGCATGAGTGTTGGNTAGTACAAATTTTCTACCATTGCTTAAAAGACTTGATGAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E331331" ref_strand="+" ref_description="SGN-E331331 [cTOD-9-C21]">
      <seq>ggaagtggaagaagacagtattgataaacccatggcgacggcaacaaggcccggtgtcccaaagtcggcagctatttccaaaggctacaatttcgcttctacttgggaacagaatgctccgttaacagagcaacaacaagcagccatacaagcactttcccatgcagttgctgagagaccttttccgtccaatttggatcaagtttctggacacgataacagtttctctgtctcaacaaaactcaattctatggaggattcaggggccattgaagcagtccttgtgaatacaaatcagttctacaagtggtttgcagatcttgaagcagccatgaaatcagagactgaagaaaaatatcagcattatgtcaacaccttaacagagcagattcagacctgcgatagtatacttcaccaggtggatgaaacacttgacttattcaatgagctgcagttgcagcaccaaacagtggcaacaaagactagaacccttcatgatgcgtgtgatagactgcttttggaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0008K08.1" temp_strand="+" temp_description="C00HBa0008K08.1  CU928482.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0008K08 sequenced_by:sanger upload_account_name:uk">
        <position start="28535" stop="32401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28835" g_stop="28946" g_length="112"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="112" r_length="112" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="28947" i_stop="29747" i_length="801">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.984" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="29748" g_stop="29831" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="196" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="29832" i_stop="29909" i_length="78">
            <donor d_prob="0.811" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="29910" g_stop="30011" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="298" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="30012" i_stop="31641" i_length="1630">
            <donor d_prob="0.978" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="31642" g_stop="31686" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="343" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="31687" i_stop="31802" i_length="116">
            <donor d_prob="0.979" d_score="1.00"/>
            <acceptor a_prob="0.969" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="31803" g_stop="31877" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="418" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="31878" i_stop="32001" i_length="124">
            <donor d_prob="0.809" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="32002" g_stop="32097" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="419" r_stop="514" r_length="96" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0008K08.1" gen_strand="+" ref_id="SGN-E331331" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0008K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E331331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28835" e_stop="28946"/>
          <exon e_start="29748" e_stop="29831"/>
          <exon e_start="29910" e_stop="30011"/>
          <exon e_start="31642" e_stop="31686"/>
          <exon e_start="31803" e_stop="31877"/>
          <exon e_start="32002" e_stop="32097"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGTGGAAGAAGACAGTATTGATAAACCCATGGCGACGGCAACAAGGCCCGGTGTCCCAAAGTCGGCAGCTATTTCCAAAGGCTACAATTTCGCTTCTACTTGGGAACAGGTTCATCCTCTGTTTTCCTTTTTCCCATTTTTTACAGTGATCACATTTTCTCCAGATTTACTAGATCTGTCTGAATGCATAACAAAAGTTATGTTTGATGACTGCATTGCACTCATCGCTGCGTAAATTAATGAATATAGTGAAGTGCTGTTTGAAAAAGAGAATCACAATATTTGGTTTGATGTATTGCTGGACTTGTTGGATTCGTTGCAGATTAAGAGAATCCTTTCCAGCAAATGTATTGGTACTGAGTTTCATGAAATTTTCACTGACCAAAAAAATAAAAAAAAAGAGAAAGAAAAGGGTGTCAAAATTGTTTCTTTGTGTGATGTGATGAAGTTCTCTCATTTAATTTCAAGCCTGTGTTTGTTTGTTTGTTGCCTCGTTTCGATGAAAGGATTTAGCAGCTTGTAATTGTGTAGCATATTCTCAATTAAACTATCTTTTCATGTTTTATTCTCATTGTAATGTGACATTGCTTCTCTTTTTCCTCGTTGGCTAACTAGCTGTTTTCTTATCTACTGACACTTTTAGTTTTAGCTTGTTCTTGCTATTACTATTGGAAAATCACCTTATCAGTACTCACCTCCATCATGGATTTGATCTTTTATTTTTTGCGTTTGTTGGCCCTCAACATGTCAAAGTATATTGTTTGTATTGATAGAAAGAATTGTTTGTATGTATGTACATGTGTCTATTTCAGGTCTATTGAAAGTTATTCCTTTAGATTAACTAAATCCGCATTAGTGGCTATCTTGATGTTTATATCTTCAACGACTTGAGCTAGTTTTCTTCTTACAGAATGCTCCGTTAACAGAGCAACAACAAGCAGCCATACAAGCACTTTCCCATGCAGTTGCTGAGAGACCTTTTCCGTCCAATTTGGTGAATTATTCCTTCTTGGTTGGTTTCAGAATACATCTATCTCAAACTCAAATTACTTGTTTTTATTTCAATTTCCAGGATCAAGTTTCTGGACACGATAACAGTTTCTCTGTCTCAACAAAACTCAATTCTATGGAGGATTCAGGGGCCATTGAAGCAGTCCTTGTGAATACAAATCAGGTGAGTTACTTTTGCGAGTGGAGTCGAGTTTCTCCCATTTGAGGGGCAGTCTCTGTTCCCTTACTTCCTTTTGGTGCACGCAGAGAGTACCTTGTATAAATGATTGGGTGGAGTTTGTAGACAATTATATCTTGTTGTAGATGCTTTACTGTTTGGAATAGCCCTGGTATATGGCCAATTTGCCCATGATTATGAATGAAAAAATATTACCTGAATAAAAAAAACAATGTTTAGTTGGCACATCCTTTATTTTTTACATTTCCAGGTTGCAGATCTTAATATTCCATATTTCAAATAAGGGATCATGGATGATTTATTCCCTTATCAAAAAGGTTACATGGTCAGCTAAATGTTGGCAAGGAATCAAAACTAATAACATCTTGCAACCAATGCTAAAATATAGAGATATATTTGTGTAAGACTATAAAGTTGTAGTGTCTTGTACTCAGTGACTCATCAGCCACACATAACTGCTAAACCAATGAATATTTTTTATGATAAGGTAACTGCTAAATTGATGAGTTGAACAGAAGGCCTGATAATTGCTTGTTAAGAAGCCCCATCCATTGTTTTGGCTTACTAGATAATATGCCTCTCATTTTGGTTCTGATGATTGTCATTAACTAAAGAGGAAACGCCTTATGCTGGGCAAAGAATGACTAGAACTCACATTTAGTGAGAAATGATAGTCAATGTCTTCTGGGGTAGGAATAGCAAAATTGCATGGAATGTGTTCAGGGATGATGACCATAGTGGCTGTTTATGGCCTGGACCCTACCTGCTTGAGTAGAACAGTATTTGTGTCTATATATCAGAAAGACATTCAAAGCAATTTGTTCTAGAACTTCCTCCATATTTGAACTATAGTAGGCCTTCCATGCCATGGAGTTTGTTTTAGATTCTTAATTTGCATGCATGTGAAATGATAGAGATAGCCCTAGAAGTTATTTTCTTTTCTCCTTTCGTTTTATTCTAGGTAAAGAGATTGTCCAATCATTATGAAATATATACCTTGTCACCAAACAAAAGTTCTCTGTCAAAGACATCATTCAACAATTTATACACACAAGAACCTTGTGGGTGCACAAAATTTAACTATAGGAGATGATTTCTCAACCTTACGGAATCATTATCCACCCCTTTCAAAAGACCTACTCTCTCCTTCCAAAGAACCACAAGGGCTAATGGAGCTATATCCCGTGCCTTCATCTTCTTCTCTTCATAGTAAAGCCCCCCAGCTAGTCACACAATGAAGGTATGGTTTTCCATGTGTCTCTTTCCATTTCCGACGCCTTTTCCTGTTCAGTAAAGTCAAATTTCTTCACGGATCTTGGCAATTTGCATGATTCTCTTTACTCCAAAATGTTAAAAGTTACAGTCATAACTGTCAGGCTATTGGGCAGTGTAGTTGGAGTTAATCACCATCGGAATCGCTCGATTAGTACATGTCACTGTCCAGCAGAAGCAATCCACTTAATAAGAAGCTTTAGTTTTCCAAATTCGTTTCCATGGCAATCTTTGTGTTGCATTCTTGTATACGCTTGAATACTGAATATGCTTCCTTTTCTGTAATGCTGCTTGAACTTGATATGCGTTTCCTCTTCCCCTTTGTGCTGTTTTGTTGATGCAGTTCTACAAGTGGTTTGCAGATCTTGAAGCAGCCATGAAATCAGAGGTTGGTCTTAGCTTGTTTATATGTTTTCTGTTTCTTCCAAAAGTTACGACTCACATGCTTCCTCTTTTACACTTGCTGATAAAAAAATATTACATATGCTTTCTTTCTGTGCGTAGACTGAAGAAAAATATCAGCATTATGTCAACACCTTAACAGAGCAGATTCAGACCTGCGATAGTATACTTCACCAGGTATTCTGAGAGGAAAAACAATGCTCATATACTCTTCTCTTAAGCCTTTTTGTTGTTGCTGTTCATCTATCTATGCTTACTTTCGAATGACATGCCCTTACCCTTAAAACTGGCTCCATTGCAGGTGGATGAAACACTTGACTTATTCAATGAGCTGCAGTTGCAGCACCAAACAGTGGCAACAAAGACTAGAACCCTTCATGATGCGTGTGATAGACTG</genome_strand>
        <mrna_strand>GGAAGTGGAAGAAGACAGTATTGATAAACCCATGGCGACGGCAACAAGGCCCGGTGTCCCAAAGTCGGCAGCTATTTCCAAAGGCTACAATTTCGCTTCTACTTGGGAACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCTCCGTTAACAGAGCAACAACAAGCAGCCATACAAGCACTTTCCCATGCAGTTGCTGAGAGACCTTTTCCGTCCAATTTG..............................................................................GATCAAGTTTCTGGACACGATAACAGTTTCTCTGTCTCAACAAAACTCAATTCTATGGAGGATTCAGGGGCCATTGAAGCAGTCCTTGTGAATACAAATCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTACAAGTGGTTTGCAGATCTTGAAGCAGCCATGAAATCAGAG....................................................................................................................ACTGAAGAAAAATATCAGCATTATGTCAACACCTTAACAGAGCAGATTCAGACCTGCGATAGTATACTTCACCAG............................................................................................................................GTGGATGAAACACTTGACTTATTCAATGAGCTGCAGTTGCAGCACCAAACAGTGGCAACAAAGACTAGAACCCTTCATGATGCGTGTGATAGACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E687822" ref_strand="+" ref_description="SGN-E687822 [T3_tus_81_D08]">
      <seq>cgttgcaatgttgtaccatccatgcttttctttggttatttgtgaagtttactatgtggacatgtctagagtcacaggtttcttctagggatatgacttcttttatcaagattaagttctattgagttaagcttgtaaatctatgcataagagcacaaataacctttgtgtttctcctctgcatcactgaagatatgtagagagtagtaacccacaatatgcagagtgcagcatttatttggtcaagtttcgacaacttcagtctcgagctctgggaatgattcgcactcacgttctttccgttcttagaagcacttcttctcaggttcaggctgcaataagaagcagcggtggtaacaagacatcttttgccgagggtatagagccatctataatatatgtacgattcaaggctgcagcaaatgagcttaagcctatcctggaggaaattgaaagcagaacacctagaaaagagtatattcaacttcttgaagaatgccacaaactctattgcgaacagcgcctttccttgataagaggtatagtgcaacagcggatctctgaattttctaggaaagaagcattgtcgtctttaactagatctggatgtgcatatttaatgcaggtgtgtcagctggagcatcaactcttcaatcacttctttccatcatcttcagaggacatttcgagtttgactcctcttgtagatcctctgtgtactttcctctatgatacatccgcgtctaaacttatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0008K08.1" temp_strand="+" temp_description="C00HBa0008K08.1  CU928482.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0008K08 sequenced_by:sanger upload_account_name:uk">
        <position start="33467" stop="35911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33764" g_stop="34021" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="262" r_length="262" r_score="0.884"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34022" i_stop="34185" i_length="164">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.127" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34186" g_stop="34248" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="325" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34249" i_stop="34345" i_length="97">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34346" g_stop="34447" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="427" r_length="102" r_score="0.931"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34448" i_stop="34599" i_length="152">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.415" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34600" g_stop="34704" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="532" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34705" i_stop="34881" i_length="177">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34882" g_stop="34974" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="533" r_stop="625" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34975" i_stop="35496" i_length="522">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="35497" g_stop="35585" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="626" r_stop="714" r_length="89" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0008K08.1" gen_strand="+" ref_id="SGN-E687822" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>710</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0008K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E687822" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33764" e_stop="34021"/>
          <exon e_start="34186" e_stop="34248"/>
          <exon e_start="34346" e_stop="34447"/>
          <exon e_start="34600" e_stop="34704"/>
          <exon e_start="34882" e_stop="34974"/>
          <exon e_start="35497" e_stop="35585"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACTGCAATGATGTAAAATCCATACTTCTCTTTGGTTATTTGTAAAGTTTACAATGTGGACATGTCTAGAGTCACAGGTTTCTTGTAGGGATTTG--TTCTTTTATCAAGATTTAAGTCCTGTTGAATTAAGCTTGTAAATCTTTGCATAAGAGCACAAATAACCATTGTGTTTCTCCTCTGCGTTACTGAAGATATGT--TGAG-AGTAACCCACAATATGCAGAGTGCAGCATTTATTTGGTCAAGTTTCGACAACTTCAGGTACTTAAGGACTGACATCAACATTATGTAATACACTATCATATATGAAATCACATTTCTTTATACAGTTGGCATGGTTTAATGGCATTCTTGGACGTAAGAACTCTAATCCCGTTGCCCGTTCTTTCTCTCTATCTGTTTTTTCTATGTCCTCCTGTAACCAGTCTCGAGCTCTGGGAATGATTCGCTCTCATGTTCTTTCCGTTCTTAGAAGTACTTCTTCTCAGGTAAATCTGCTTTATGCTTCACTGCTATATGCACCACAATCTTTGACTTGCAGATGAATGGTTGTATCTTCTGAGATAAATGTACCTATTTCATCAGGTCCAGGCTGCAATACGAAGCAGTGGTGGTAGCAAAACATCTTTTGCCGAGGGTATAGAGTCATCTATAATATATGTACGCTTCAAGGCTGCAGCAAATGAGGTAATATTGGAACATCTCCTTGCGTTTTAGTTTATAGAAACTCTATTACTTCGTTGTATCAGAATGAGTATTTCTAATCTCAAAAAATAAAATAAAAATAGGACTAGCTTTAACGTGTAATCCATGAACTTAATGATCTTAGTTACCTGCAGCTTAAGCCTATCTTGGAGGAAATTGAAAGTAGAACACCTAGAAAAGAGTATATTCAACTTCTTGAAGAATGCCACAAACTCTATTGTGAACAGCGCCTTTCCTTGGTGAGTATAAGCTGCTCCATTTAGTTCTCTCTCTCTCTCTCTCTCTCTATCTATCTATCTATCTATATATATATATATATATATATATATATATATTACGGCTTTTTTCTTGGTTATATTTTTTCTTCTCCTTGTTTGCCATTTTAATTAGTACTCCTTCTGTTTCATTTAATTCAGATAAGAGGTATAGTGCAACAGCGGATCTCTGAATTTTCCAGGAAAGAAGCACTGTCGTCTTTAACTAGATCTGGATGTGCATATTTAATGCAGGTACATTTAAATGGCTTCAGTACTTTTTACAATATTTTGTACTAGAGAGCAGTATGATTGTTACATCTTGCCTTACAAATCTTTGATGACTGTTCTTTCTATGGTGATGGTGGTGGTTTTTTTTAGTGTTGATGGGGGTATCAGAAGAAGAAGATGAAAAGACACAATTCAACGTTGACCTCCCAGTCTTGATAGTCATATGAACAATCCACATTCATTTTTCTTTTTATTTCAAAGTAACTAGTTGTAAGAAAGTGAGTCACGTCTTACGTTTTCTTTTAATAGTTAGCTCATCTTAGTGTAGATGAATATTTCCTCTTAACTGGGTCTAGGATAAATGAGCTAAAGTTATGGCAGCCTTGGTTTCTTTGAGGAAGGAATCATATCTATATGTTTTTCTATGAATCACTATTGCCAAATATATATAGGAGGTTGCTTCTAAAAAAGTCTTGCTAAAGGCATATTAGTGTAAAATTGTGATATATGTCTCTCCATAATTTACCTTTGACACCGTAAATGCAGGTGTGTCAGCTAGAGCATCAACTTTTCAATCACTTCTTCCCATCATCTTCAGAGGACATTTCGAGTTTGACTCCTCTTGTAGATCCTCT</genome_strand>
        <mrna_strand>CGTTGCAATGTTGTACCATCCATGCTTTTCTTTGGTTATTTGTGAAGTTTACTATGTGGACATGTCTAGAGTCACAGGTTTCTTCTAGGGATATGACTTCTTTTATCAAGA-TTAAGTTCTATTGAGTTAAGCTTGTAAATCTATGCATAAGAGCACAAATAACCTTTGTGTTTCTCCTCTGCATCACTGAAGATATGTAGAGAGTAGTAACCCACAATATGCAGAGTGCAGCATTTATTTGGTCAAGTTTCGACAACTTCAG....................................................................................................................................................................TCTCGAGCTCTGGGAATGATTCGCACTCACGTTCTTTCCGTTCTTAGAAGCACTTCTTCTCAG.................................................................................................GTTCAGGCTGCAATAAGAAGCAGCGGTGGTAACAAGACATCTTTTGCCGAGGGTATAGAGCCATCTATAATATATGTACGATTCAAGGCTGCAGCAAATGAG........................................................................................................................................................CTTAAGCCTATCCTGGAGGAAATTGAAAGCAGAACACCTAGAAAAGAGTATATTCAACTTCTTGAAGAATGCCACAAACTCTATTGCGAACAGCGCCTTTCCTTG.................................................................................................................................................................................ATAAGAGGTATAGTGCAACAGCGGATCTCTGAATTTTCTAGGAAAGAAGCATTGTCGTCTTTAACTAGATCTGGATGTGCATATTTAATGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTCAGCTGGAGCATCAACTCTTCAATCACTTCTTTCCATCATCTTCAGAGGACATTTCGAGTTTGACTCCTCTTGTAGATCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E327185" ref_strand="+" ref_description="SGN-E327185 [cTOC-18-J10]">
      <seq>tgcaatgttgtaccatccatgcttttctttggttatttgtgaagtttactatgtggacatgtctagagtcacaggtttcttctagggatatgacttcttttatcaagattaagttctattgagttaagcttgtaaatctatgcataagagcacaaataacctttgtgtttctcctctgcatcactgaagatatgtagagagtagtaacccacaatatgcagagtgcagcatttatttggtcaagtttcgacaacttcagtctcgagctctgggaatgattcgcactcacgttctttccgttcttagaagcacttcttctcaggttcaggctgcaataagaagcagcggtggtaacaagacatcttttgccgagggtatagagccatctataatatatgtacgattcaaggctgcagcaaatgagcttaagcctatcctggaggaaattgaaagcagaacacctagaaaagagtatattcaacttcttgaagaatgccacaaactctattgcgaacagcgcctttccttgataagaggtatagtgcaacagcggatctctgaattttctaggaaagaagcattgtcgtctttaactagatctggatgtgcatatttaatgcaggtgtgtcagctggagcatnncactcttcatcacttctttccatcatctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0008K08.1" temp_strand="+" temp_description="C00HBa0008K08.1  CU928482.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0008K08 sequenced_by:sanger upload_account_name:uk">
        <position start="33467" stop="35814"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33767" g_stop="34021" g_length="255"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="259" r_length="259" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34022" i_stop="34185" i_length="164">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.127" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34186" g_stop="34248" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="260" r_stop="322" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34249" i_stop="34345" i_length="97">
            <donor d_prob="0.988" d_score="0.94"/>
            <acceptor a_prob="0.989" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34346" g_stop="34447" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="424" r_length="102" r_score="0.931"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34448" i_stop="34599" i_length="152">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.415" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34600" g_stop="34704" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="529" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34705" i_stop="34881" i_length="177">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="34882" g_stop="34974" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="622" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="34975" i_stop="35496" i_length="522">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="35497" g_stop="35545" g_length="49"/>
          <reference_exon_boundary r_type="cDNA" r_start="623" r_stop="671" r_length="49" r_score="0.837"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0008K08.1" gen_strand="+" ref_id="SGN-E327185" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0008K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327185" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33767" e_stop="34021"/>
          <exon e_start="34186" e_stop="34248"/>
          <exon e_start="34346" e_stop="34447"/>
          <exon e_start="34600" e_stop="34704"/>
          <exon e_start="34882" e_stop="34974"/>
          <exon e_start="35497" e_stop="35545"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAATGATGTAAAATCCATACTTCTCTTTGGTTATTTGTAAAGTTTACAATGTGGACATGTCTAGAGTCACAGGTTTCTTGTAGGGATTTG--TTCTTTTATCAAGATTTAAGTCCTGTTGAATTAAGCTTGTAAATCTTTGCATAAGAGCACAAATAACCATTGTGTTTCTCCTCTGCGTTACTGAAGATATGT--TGAG-AGTAACCCACAATATGCAGAGTGCAGCATTTATTTGGTCAAGTTTCGACAACTTCAGGTACTTAAGGACTGACATCAACATTATGTAATACACTATCATATATGAAATCACATTTCTTTATACAGTTGGCATGGTTTAATGGCATTCTTGGACGTAAGAACTCTAATCCCGTTGCCCGTTCTTTCTCTCTATCTGTTTTTTCTATGTCCTCCTGTAACCAGTCTCGAGCTCTGGGAATGATTCGCTCTCATGTTCTTTCCGTTCTTAGAAGTACTTCTTCTCAGGTAAATCTGCTTTATGCTTCACTGCTATATGCACCACAATCTTTGACTTGCAGATGAATGGTTGTATCTTCTGAGATAAATGTACCTATTTCATCAGGTCCAGGCTGCAATACGAAGCAGTGGTGGTAGCAAAACATCTTTTGCCGAGGGTATAGAGTCATCTATAATATATGTACGCTTCAAGGCTGCAGCAAATGAGGTAATATTGGAACATCTCCTTGCGTTTTAGTTTATAGAAACTCTATTACTTCGTTGTATCAGAATGAGTATTTCTAATCTCAAAAAATAAAATAAAAATAGGACTAGCTTTAACGTGTAATCCATGAACTTAATGATCTTAGTTACCTGCAGCTTAAGCCTATCTTGGAGGAAATTGAAAGTAGAACACCTAGAAAAGAGTATATTCAACTTCTTGAAGAATGCCACAAACTCTATTGTGAACAGCGCCTTTCCTTGGTGAGTATAAGCTGCTCCATTTAGTTCTCTCTCTCTCTCTCTCTCTCTATCTATCTATCTATCTATATATATATATATATATATATATATATATATTACGGCTTTTTTCTTGGTTATATTTTTTCTTCTCCTTGTTTGCCATTTTAATTAGTACTCCTTCTGTTTCATTTAATTCAGATAAGAGGTATAGTGCAACAGCGGATCTCTGAATTTTCCAGGAAAGAAGCACTGTCGTCTTTAACTAGATCTGGATGTGCATATTTAATGCAGGTACATTTAAATGGCTTCAGTACTTTTTACAATATTTTGTACTAGAGAGCAGTATGATTGTTACATCTTGCCTTACAAATCTTTGATGACTGTTCTTTCTATGGTGATGGTGGTGGTTTTTTTTAGTGTTGATGGGGGTATCAGAAGAAGAAGATGAAAAGACACAATTCAACGTTGACCTCCCAGTCTTGATAGTCATATGAACAATCCACATTCATTTTTCTTTTTATTTCAAAGTAACTAGTTGTAAGAAAGTGAGTCACGTCTTACGTTTTCTTTTAATAGTTAGCTCATCTTAGTGTAGATGAATATTTCCTCTTAACTGGGTCTAGGATAAATGAGCTAAAGTTATGGCAGCCTTGGTTTCTTTGAGGAAGGAATCATATCTATATGTTTTTCTATGAATCACTATTGCCAAATATATATAGGAGGTTGCTTCTAAAAAAGTCTTGCTAAAGGCATATTAGTGTAAAATTGTGATATATGTCTCTCCATAATTTACCTTTGACACCGTAAATGCAGGTGTGTCAGCTAGAGCATCA-ACTTTTCAATCACTTCTTCCCATCATCTT</genome_strand>
        <mrna_strand>TGCAATGTTGTACCATCCATGCTTTTCTTTGGTTATTTGTGAAGTTTACTATGTGGACATGTCTAGAGTCACAGGTTTCTTCTAGGGATATGACTTCTTTTATCAAGA-TTAAGTTCTATTGAGTTAAGCTTGTAAATCTATGCATAAGAGCACAAATAACCTTTGTGTTTCTCCTCTGCATCACTGAAGATATGTAGAGAGTAGTAACCCACAATATGCAGAGTGCAGCATTTATTTGGTCAAGTTTCGACAACTTCAG....................................................................................................................................................................TCTCGAGCTCTGGGAATGATTCGCACTCACGTTCTTTCCGTTCTTAGAAGCACTTCTTCTCAG.................................................................................................GTTCAGGCTGCAATAAGAAGCAGCGGTGGTAACAAGACATCTTTTGCCGAGGGTATAGAGCCATCTATAATATATGTACGATTCAAGGCTGCAGCAAATGAG........................................................................................................................................................CTTAAGCCTATCCTGGAGGAAATTGAAAGCAGAACACCTAGAAAAGAGTATATTCAACTTCTTGAAGAATGCCACAAACTCTATTGCGAACAGCGCCTTTCCTTG.................................................................................................................................................................................ATAAGAGGTATAGTGCAACAGCGGATCTCTGAATTTTCTAGGAAAGAAGCATTGTCGTCTTTAACTAGATCTGGATGTGCATATTTAATGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTCAGCTGGAGCATNNCACTCTTC-ATCACTTCTTTCCATCATCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E249802" ref_strand="+" ref_description="SGN-E249802 [cLEF-57-H10]">
      <seq>ttctctctatctgttttttctatgtcctcctgtaaccagtctcgagctctgggaatgattcgctctcatgttctttccgttcttagaagtacttcttctcaggtccaggctgcaatacgaagcagtggtggtagcaaaacatcttttgccgagggtatagagtcatctataatatatgtacgcttcaaggctgcagcaaatgagcttaagcctatcttggaggaaattgaaagtagaacacctagaaaagagtatattcaacttcttgaagaatgccacaaactctattgtgaacagcgcctttccttgataagaggtatagtgcaacagcggatctctgaattttccaggaaagaagcactgtcgtctttaactagatctggatgtgcatatttaatgcaggtgtgtcagctagagcatcaacttttcaatcacttcttcccatcatcttcagaggacatttcgagtttgactcctcttgtagatcctctgtgtactttcctctatgatacattgcgtcctaaacttattcacgaaacaaatctggatgttctttgtgaactggttgatat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0008K08.1" temp_strand="+" temp_description="C00HBa0008K08.1  CU928482.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0008K08 sequenced_by:sanger upload_account_name:uk">
        <position start="33847" stop="38801"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34147" g_stop="34248" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34249" i_stop="34345" i_length="97">
            <donor d_prob="0.988" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34346" g_stop="34447" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="204" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34448" i_stop="34599" i_length="152">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.415" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34600" g_stop="34704" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="205" r_stop="309" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34705" i_stop="34881" i_length="177">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="34882" g_stop="34974" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="310" r_stop="402" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="34975" i_stop="35496" i_length="522">
            <donor d_prob="0.901" d_score="1.00"/>
            <acceptor a_prob="0.910" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="35497" g_stop="35585" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="491" r_length="89" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="35586" i_stop="38420" i_length="2835">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.659" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="38421" g_stop="38497" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="492" r_stop="568" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0008K08.1" gen_strand="+" ref_id="SGN-E249802" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0008K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249802" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34147" e_stop="34248"/>
          <exon e_start="34346" e_stop="34447"/>
          <exon e_start="34600" e_stop="34704"/>
          <exon e_start="34882" e_stop="34974"/>
          <exon e_start="35497" e_stop="35585"/>
          <exon e_start="38421" e_stop="38497"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTCTCTATCTGTTTTTTCTATGTCCTCCTGTAACCAGTCTCGAGCTCTGGGAATGATTCGCTCTCATGTTCTTTCCGTTCTTAGAAGTACTTCTTCTCAGGTAAATCTGCTTTATGCTTCACTGCTATATGCACCACAATCTTTGACTTGCAGATGAATGGTTGTATCTTCTGAGATAAATGTACCTATTTCATCAGGTCCAGGCTGCAATACGAAGCAGTGGTGGTAGCAAAACATCTTTTGCCGAGGGTATAGAGTCATCTATAATATATGTACGCTTCAAGGCTGCAGCAAATGAGGTAATATTGGAACATCTCCTTGCGTTTTAGTTTATAGAAACTCTATTACTTCGTTGTATCAGAATGAGTATTTCTAATCTCAAAAAATAAAATAAAAATAGGACTAGCTTTAACGTGTAATCCATGAACTTAATGATCTTAGTTACCTGCAGCTTAAGCCTATCTTGGAGGAAATTGAAAGTAGAACACCTAGAAAAGAGTATATTCAACTTCTTGAAGAATGCCACAAACTCTATTGTGAACAGCGCCTTTCCTTGGTGAGTATAAGCTGCTCCATTTAGTTCTCTCTCTCTCTCTCTCTCTCTATCTATCTATCTATCTATATATATATATATATATATATATATATATATTACGGCTTTTTTCTTGGTTATATTTTTTCTTCTCCTTGTTTGCCATTTTAATTAGTACTCCTTCTGTTTCATTTAATTCAGATAAGAGGTATAGTGCAACAGCGGATCTCTGAATTTTCCAGGAAAGAAGCACTGTCGTCTTTAACTAGATCTGGATGTGCATATTTAATGCAGGTACATTTAAATGGCTTCAGTACTTTTTACAATATTTTGTACTAGAGAGCAGTATGATTGTTACATCTTGCCTTACAAATCTTTGATGACTGTTCTTTCTATGGTGATGGTGGTGGTTTTTTTTAGTGTTGATGGGGGTATCAGAAGAAGAAGATGAAAAGACACAATTCAACGTTGACCTCCCAGTCTTGATAGTCATATGAACAATCCACATTCATTTTTCTTTTTATTTCAAAGTAACTAGTTGTAAGAAAGTGAGTCACGTCTTACGTTTTCTTTTAATAGTTAGCTCATCTTAGTGTAGATGAATATTTCCTCTTAACTGGGTCTAGGATAAATGAGCTAAAGTTATGGCAGCCTTGGTTTCTTTGAGGAAGGAATCATATCTATATGTTTTTCTATGAATCACTATTGCCAAATATATATAGGAGGTTGCTTCTAAAAAAGTCTTGCTAAAGGCATATTAGTGTAAAATTGTGATATATGTCTCTCCATAATTTACCTTTGACACCGTAAATGCAGGTGTGTCAGCTAGAGCATCAACTTTTCAATCACTTCTTCCCATCATCTTCAGAGGACATTTCGAGTTTGACTCCTCTTGTAGATCCTCTGTGAGTTGCCTTACTTCTCTTGTGGGGTTGTTTCTGCATTTGAACCATTTTGCTTCTTGCATATTTCCTTTCCCGTTTTTTCTTTTCTAATTTTCTTCTTTTCCCTTTTCCTTGTCTTGGTTCGCTAGGGTGGGTAGGGGTGGGGGTGTGGAGGTTTGGATTATCTGTATTGTTTTTCATGCACCTTGTAAATAAGGAGCCAAAATTGCAATTTTTTTTGGTGCCTGTAAGACTGTCATTTTGGTAGCTTGTGCCGTGCAAGAGTTGCTATCAGTGGTAAGTTGGTGTAATCGTTTTCAGACATTATTCGAGTGCTAATAAAAATCTGTGTGGACTATGAGGCGGCCCAATAGCTTAGTGATTGTCAATTTAGATTTTAGGGCTAGCACAAGATTAGTTCCTGGTTTGGAATTTGAAGCCATCCTGTGGGATCTATGCCTATCTATTCCTTTGAAAGAGCCGCTCTGGTCTGGATTTGCACCTTGCTCCGACCATCAGTTATGAATATGTGCTATATTTATATATCAAGTTGGTCTGGTCAAAATTTGCTCCTGCGAAGCTTCAACTACTTTTTTGACCTTAAATTTTGGACTTCGAGTCACAAATGTGGAGGTTACATGTGAAACTTATAGCTACTTCAAGGCAAACAAGGTCCTTCGAGTATACGCCTTAACTTATTCTCCAAAACAAAAGTATAAGCTTTAACATCAAAGGTGGGTAAACCGTTACTTTTTGAAAAAGGCGGAAGAAAAATTATTTAAGTGAAGGGTAAGGAGTTGGCTCATTATCCATTAAGTTTCAAATCGTGTGCCAGTTGGCCCTTGGGGTTTCTCGGTCAGGTGGGAAAGCAGTCTTCTATGCCCGGAAAAGTAGAATCAGAAGTCTGGTCTTATTTGCTTTCATGAAGATTAAGATGTTTGAATTTGAATACACATCTGAATATTAAGTTCTAAATGGTGGTGGCGGTGATGGTTCTCGGTGGTAGTTGTGAGTAGTAGCTAGTGTTGATGGTCGGTGGTAGTAGTGGTGGGTGGTGGTAGTGGCAGCTAATAGTTTGCAGTGGATAATAGTGATAACTATTGGTGGTGTTGAATGATTACGGTGGTTTGACTATATATAGTGGTGATTGTCGGTAGTGATTAGTGTTTGTTGTGGTAATGGTGGTTGGTGCTGATAATTGTAAATGTGGCTAGTGGCGGTGATGATAGTTGGTGATCTAGCATCTAAATACATTTCATGGATCCTTGAAAGCTGTTTTAACATACCTGATTTGTTATAAAGAGGTAAGGTTCATGTCCCCCTCTTTTTTTGTACAATATTTTTGATGTACAATGTAGGGGCCAAGCTAAATCTTCCACTCGTAGTAGAAGTAGACCACTAGAGACGTATTAAAAAAATAATAAGAAGTGGCAGTATTGGCAGTGGTGGTGGTTGTGGGTAAGGATGGCGGTAGTTGATAATTTTGGGCGGTAAGCCGGGAACGTGAATGGATGAAATTGTTGAACTACCATATTTGTAGAATTTTCTAAAAAGATATCTTAATGATATTAAGACTTGATTTTAGTAATTTAGATCTATTCAGACTCGTTAAGTGGTTGTAACATGAAAAAAACAAATGCATTTAAGATTTGAATAATTCAGATCTAAAAATAATCGGACTTAATGACTGAGATGTGAATGGTTAGGATTAAGACCATCATTAAGTGCAGACAAATGAGGCCTAAGGAAACCTAATTGTTGTCAATTACTACATGTTATGTGCTTCTTTGTGAATTATCTCTTTGCTGACTCCTCTCACTATCTGGGGTTTCCACTCATTTCCCCATTGTTGATACATAAAACTAGATGTCCATTGCACCTGTATCTTTCGTTTTGTTCATAAGTTTTCTTTTTTCCTTCTCTGGGTGTTTTAACTTACATGTATGTCCTTCCTGATTGTTGGGCAGAGAGACAGAAAGCCTTGCGCTTTTACCCATCAAAATTTGACCTGGAGTATAAGCTTCATCATTTTTATAGTTTTTCTTGTCAAGTTAATGTGATCAGATAATATCAATGAAGTGAGTTCAGTTTCTAAAAGCATCAATAGAGTGAGCTATGGTTACTGATAGTTAATCTAATGGCAGATTTTCGATGTCGGTAAGTTTAATCAGTAGTGGAACGTGTACCTTTTATATATAAAAAGGTAGGGGAACATGTTATCCAGTTCACTTGATAGTACTCTTCTCTTTGCTCCATTCTTTTTATTGGAGATATGCATTCAGATATTCTCTGCCTCCTGCATTCTCAAGCTATATTTTTACTTGCATCCTTTGTTTGTAAATAAGATTATTTATGTTGTCCATGAGAAGTCATATTTTGAACTTATGTCCCAGCACAATTACATTTCCTTGTTATCATTTATCTCTGCATAACATGATATGAATATTCTGTGCATAGCATCTAAATCCACATGCACCTGACCCATCTCTCATTTGGTCCAGTTACAGCAGTTTAATGAAGCGTTGACATGTTATACTCCTTCCGTCCATTTTAGGTGACAGAGTTTAAAAAAGAAAGAAAGACTTTTGAAACTTGTGGTCTAACAGGTCATAGACATTTATGTGACTATAAAACATATCATTAAGCATAGAAATGTAAGTTTAAAGTTGAATAGTTATCAAAAAGGAAGAGGTGTCATTCTTTTTTGGATAGACTAAAAAGGAAAGTGTGTTGCATAAAATGGGACGGAGGAAGTATTATCTATGTGCCCCTGAAGCTGCTGGAACTTGAACTTTGTTTTTTTGATGATAAGTAACTTGATCATTAAGGTTACAATTACCTCCCTACCAACTGCAGGTGTACTTTCCTCTATGATACATTGCGTCCTAAACTTATTCACGAAACAAATCTGGATGTTCTTTGTGAACTGGTTG</genome_strand>
        <mrna_strand>TTCTCTCTATCTGTTTTTTCTATGTCCTCCTGTAACCAGTCTCGAGCTCTGGGAATGATTCGCTCTCATGTTCTTTCCGTTCTTAGAAGTACTTCTTCTCAG.................................................................................................GTCCAGGCTGCAATACGAAGCAGTGGTGGTAGCAAAACATCTTTTGCCGAGGGTATAGAGTCATCTATAATATATGTACGCTTCAAGGCTGCAGCAAATGAG........................................................................................................................................................CTTAAGCCTATCTTGGAGGAAATTGAAAGTAGAACACCTAGAAAAGAGTATATTCAACTTCTTGAAGAATGCCACAAACTCTATTGTGAACAGCGCCTTTCCTTG.................................................................................................................................................................................ATAAGAGGTATAGTGCAACAGCGGATCTCTGAATTTTCCAGGAAAGAAGCACTGTCGTCTTTAACTAGATCTGGATGTGCATATTTAATGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTCAGCTAGAGCATCAACTTTTCAATCACTTCTTCCCATCATCTTCAGAGGACATTTCGAGTTTGACTCCTCTTGTAGATCCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACTTTCCTCTATGATACATTGCGTCCTAAACTTATTCACGAAACAAATCTGGATGTTCTTTGTGAACTGGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E265693" ref_strand="+" ref_description="SGN-E265693 [cLEI-11-A1]">
      <seq>tcaggctgcaataagaagcagcggtggtaacaagacatcttttgccgagggtgtagagccatctataatatatgtacgattcaaggctgcagcaaatgagcttaagcctatcctggaggaaattgaaagcagaacacctagaaaagagtatattcaacttcttgaagaatgccacaaactctattgcgaacagcgcctttccttgataagaggtatagtgcaacagcggatctctgaattttctaggaaagaagcattgtcgtctttaactagatctggatgtgcatatttaatgcaggtgtgtcagctggagcatcaactcttcaatcacttctttccatcatcttcagaggacatttcgagtttgactcctcttgtagatcctctgtgtactttcctctatgatacatcgcgtcctaaacttattcacgaaacaaacctggatgttctttgtgaactggttaatatcctcaaagttgaagttctaggagaacagctgagcagacggaggaagtcattggctgggttacctccaacgctagacaggattctagctaatgttcatgaacgattaacttttcgtgctcgcacctatatccgtgatgaggttatcatgatagctttctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0008K08.1" temp_strand="+" temp_description="C00HBa0008K08.1  CU928482.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0008K08 sequenced_by:sanger upload_account_name:uk">
        <position start="34049" stop="38947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34348" g_stop="34447" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34448" i_stop="34599" i_length="152">
            <donor d_prob="0.996" d_score="0.94"/>
            <acceptor a_prob="0.415" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34600" g_stop="34704" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="205" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34705" i_stop="34881" i_length="177">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34882" g_stop="34974" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="298" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34975" i_stop="35496" i_length="522">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35497" g_stop="35585" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="387" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35586" i_stop="38420" i_length="2835">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.659" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38421" g_stop="38640" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="607" r_length="220" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0008K08.1" gen_strand="+" ref_id="SGN-E265693" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0008K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E265693" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34348" e_stop="34447"/>
          <exon e_start="34600" e_stop="34704"/>
          <exon e_start="34882" e_stop="34974"/>
          <exon e_start="35497" e_stop="35585"/>
          <exon e_start="38421" e_stop="38640"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGGCTGCAATACGAAGCAGTGGTGGTAGCAAAACATCTTTTGCCGAGGGTATAGAGTCATCTATAATATATGTACGCTTCAAGGCTGCAGCAAATGAGGTAATATTGGAACATCTCCTTGCGTTTTAGTTTATAGAAACTCTATTACTTCGTTGTATCAGAATGAGTATTTCTAATCTCAAAAAATAAAATAAAAATAGGACTAGCTTTAACGTGTAATCCATGAACTTAATGATCTTAGTTACCTGCAGCTTAAGCCTATCTTGGAGGAAATTGAAAGTAGAACACCTAGAAAAGAGTATATTCAACTTCTTGAAGAATGCCACAAACTCTATTGTGAACAGCGCCTTTCCTTGGTGAGTATAAGCTGCTCCATTTAGTTCTCTCTCTCTCTCTCTCTCTCTATCTATCTATCTATCTATATATATATATATATATATATATATATATATTACGGCTTTTTTCTTGGTTATATTTTTTCTTCTCCTTGTTTGCCATTTTAATTAGTACTCCTTCTGTTTCATTTAATTCAGATAAGAGGTATAGTGCAACAGCGGATCTCTGAATTTTCCAGGAAAGAAGCACTGTCGTCTTTAACTAGATCTGGATGTGCATATTTAATGCAGGTACATTTAAATGGCTTCAGTACTTTTTACAATATTTTGTACTAGAGAGCAGTATGATTGTTACATCTTGCCTTACAAATCTTTGATGACTGTTCTTTCTATGGTGATGGTGGTGGTTTTTTTTAGTGTTGATGGGGGTATCAGAAGAAGAAGATGAAAAGACACAATTCAACGTTGACCTCCCAGTCTTGATAGTCATATGAACAATCCACATTCATTTTTCTTTTTATTTCAAAGTAACTAGTTGTAAGAAAGTGAGTCACGTCTTACGTTTTCTTTTAATAGTTAGCTCATCTTAGTGTAGATGAATATTTCCTCTTAACTGGGTCTAGGATAAATGAGCTAAAGTTATGGCAGCCTTGGTTTCTTTGAGGAAGGAATCATATCTATATGTTTTTCTATGAATCACTATTGCCAAATATATATAGGAGGTTGCTTCTAAAAAAGTCTTGCTAAAGGCATATTAGTGTAAAATTGTGATATATGTCTCTCCATAATTTACCTTTGACACCGTAAATGCAGGTGTGTCAGCTAGAGCATCAACTTTTCAATCACTTCTTCCCATCATCTTCAGAGGACATTTCGAGTTTGACTCCTCTTGTAGATCCTCTGTGAGTTGCCTTACTTCTCTTGTGGGGTTGTTTCTGCATTTGAACCATTTTGCTTCTTGCATATTTCCTTTCCCGTTTTTTCTTTTCTAATTTTCTTCTTTTCCCTTTTCCTTGTCTTGGTTCGCTAGGGTGGGTAGGGGTGGGGGTGTGGAGGTTTGGATTATCTGTATTGTTTTTCATGCACCTTGTAAATAAGGAGCCAAAATTGCAATTTTTTTTGGTGCCTGTAAGACTGTCATTTTGGTAGCTTGTGCCGTGCAAGAGTTGCTATCAGTGGTAAGTTGGTGTAATCGTTTTCAGACATTATTCGAGTGCTAATAAAAATCTGTGTGGACTATGAGGCGGCCCAATAGCTTAGTGATTGTCAATTTAGATTTTAGGGCTAGCACAAGATTAGTTCCTGGTTTGGAATTTGAAGCCATCCTGTGGGATCTATGCCTATCTATTCCTTTGAAAGAGCCGCTCTGGTCTGGATTTGCACCTTGCTCCGACCATCAGTTATGAATATGTGCTATATTTATATATCAAGTTGGTCTGGTCAAAATTTGCTCCTGCGAAGCTTCAACTACTTTTTTGACCTTAAATTTTGGACTTCGAGTCACAAATGTGGAGGTTACATGTGAAACTTATAGCTACTTCAAGGCAAACAAGGTCCTTCGAGTATACGCCTTAACTTATTCTCCAAAACAAAAGTATAAGCTTTAACATCAAAGGTGGGTAAACCGTTACTTTTTGAAAAAGGCGGAAGAAAAATTATTTAAGTGAAGGGTAAGGAGTTGGCTCATTATCCATTAAGTTTCAAATCGTGTGCCAGTTGGCCCTTGGGGTTTCTCGGTCAGGTGGGAAAGCAGTCTTCTATGCCCGGAAAAGTAGAATCAGAAGTCTGGTCTTATTTGCTTTCATGAAGATTAAGATGTTTGAATTTGAATACACATCTGAATATTAAGTTCTAAATGGTGGTGGCGGTGATGGTTCTCGGTGGTAGTTGTGAGTAGTAGCTAGTGTTGATGGTCGGTGGTAGTAGTGGTGGGTGGTGGTAGTGGCAGCTAATAGTTTGCAGTGGATAATAGTGATAACTATTGGTGGTGTTGAATGATTACGGTGGTTTGACTATATATAGTGGTGATTGTCGGTAGTGATTAGTGTTTGTTGTGGTAATGGTGGTTGGTGCTGATAATTGTAAATGTGGCTAGTGGCGGTGATGATAGTTGGTGATCTAGCATCTAAATACATTTCATGGATCCTTGAAAGCTGTTTTAACATACCTGATTTGTTATAAAGAGGTAAGGTTCATGTCCCCCTCTTTTTTTGTACAATATTTTTGATGTACAATGTAGGGGCCAAGCTAAATCTTCCACTCGTAGTAGAAGTAGACCACTAGAGACGTATTAAAAAAATAATAAGAAGTGGCAGTATTGGCAGTGGTGGTGGTTGTGGGTAAGGATGGCGGTAGTTGATAATTTTGGGCGGTAAGCCGGGAACGTGAATGGATGAAATTGTTGAACTACCATATTTGTAGAATTTTCTAAAAAGATATCTTAATGATATTAAGACTTGATTTTAGTAATTTAGATCTATTCAGACTCGTTAAGTGGTTGTAACATGAAAAAAACAAATGCATTTAAGATTTGAATAATTCAGATCTAAAAATAATCGGACTTAATGACTGAGATGTGAATGGTTAGGATTAAGACCATCATTAAGTGCAGACAAATGAGGCCTAAGGAAACCTAATTGTTGTCAATTACTACATGTTATGTGCTTCTTTGTGAATTATCTCTTTGCTGACTCCTCTCACTATCTGGGGTTTCCACTCATTTCCCCATTGTTGATACATAAAACTAGATGTCCATTGCACCTGTATCTTTCGTTTTGTTCATAAGTTTTCTTTTTTCCTTCTCTGGGTGTTTTAACTTACATGTATGTCCTTCCTGATTGTTGGGCAGAGAGACAGAAAGCCTTGCGCTTTTACCCATCAAAATTTGACCTGGAGTATAAGCTTCATCATTTTTATAGTTTTTCTTGTCAAGTTAATGTGATCAGATAATATCAATGAAGTGAGTTCAGTTTCTAAAAGCATCAATAGAGTGAGCTATGGTTACTGATAGTTAATCTAATGGCAGATTTTCGATGTCGGTAAGTTTAATCAGTAGTGGAACGTGTACCTTTTATATATAAAAAGGTAGGGGAACATGTTATCCAGTTCACTTGATAGTACTCTTCTCTTTGCTCCATTCTTTTTATTGGAGATATGCATTCAGATATTCTCTGCCTCCTGCATTCTCAAGCTATATTTTTACTTGCATCCTTTGTTTGTAAATAAGATTATTTATGTTGTCCATGAGAAGTCATATTTTGAACTTATGTCCCAGCACAATTACATTTCCTTGTTATCATTTATCTCTGCATAACATGATATGAATATTCTGTGCATAGCATCTAAATCCACATGCACCTGACCCATCTCTCATTTGGTCCAGTTACAGCAGTTTAATGAAGCGTTGACATGTTATACTCCTTCCGTCCATTTTAGGTGACAGAGTTTAAAAAAGAAAGAAAGACTTTTGAAACTTGTGGTCTAACAGGTCATAGACATTTATGTGACTATAAAACATATCATTAAGCATAGAAATGTAAGTTTAAAGTTGAATAGTTATCAAAAAGGAAGAGGTGTCATTCTTTTTTGGATAGACTAAAAAGGAAAGTGTGTTGCATAAAATGGGACGGAGGAAGTATTATCTATGTGCCCCTGAAGCTGCTGGAACTTGAACTTTGTTTTTTTGATGATAAGTAACTTGATCATTAAGGTTACAATTACCTCCCTACCAACTGCAGGTGTACTTTCCTCTATGATACATTGCGTCCTAAACTTATTCACGAAACAAATCTGGATGTTCTTTGTGAACTGGTTGATATCCTTAAAGTTGAAGTTCTAGGAGAACAATTGAGCAGACGGGGGGAATCATTGGCTGGGCTACGTCCAACGCTGGACAGAATTCTAGCAGATGTACATGAGCGATTAACTTTTCGTTCTCGCACCTATATCCGTGATGAG</genome_strand>
        <mrna_strand>TCAGGCTGCAATAAGAAGCAGCGGTGGTAACAAGACATCTTTTGCCGAGGGTGTAGAGCCATCTATAATATATGTACGATTCAAGGCTGCAGCAAATGAG........................................................................................................................................................CTTAAGCCTATCCTGGAGGAAATTGAAAGCAGAACACCTAGAAAAGAGTATATTCAACTTCTTGAAGAATGCCACAAACTCTATTGCGAACAGCGCCTTTCCTTG.................................................................................................................................................................................ATAAGAGGTATAGTGCAACAGCGGATCTCTGAATTTTCTAGGAAAGAAGCATTGTCGTCTTTAACTAGATCTGGATGTGCATATTTAATGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTCAGCTGGAGCATCAACTCTTCAATCACTTCTTTCCATCATCTTCAGAGGACATTTCGAGTTTGACTCCTCTTGTAGATCCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACTTTCCTCTATGATACATCGCGTCCTAAACTTATTCACGAAACAAACCTGGATGTTCTTTGTGAACTGGTTAATATCCTCAAAGTTGAAGTTCTAGGAGAACAGCTGAGCAGACGGAGGAAGTCATTGGCTGGGTTACCTCCAACGCTAGACAGGATTCTAGCTAATGTTCATGAACGATTAACTTTTCGTGCTCGCACCTATATCCGTGATGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E266187" ref_strand="+" ref_description="SGN-E266187 [cLEI-3-I11]">
      <seq>tcaggctgcaataagaagcagcggtggtaacaagacatcttttgccgagggtatagagccatctataatatatgtacgattcaaggctgcagcaaatgagcttaagcctatcctggaggaaattgaaagcagaacacctagaaaagagtatattcaacttcttgaagaatgccacaaactctattgcgaacagcgcctttccttgataagaggtatagtgcaacagcggatctctgaattttctaggaaagaagcattgtcgtctttaactagatctggatgtgcatatttaatgcaggtgtgtcagctggagcatcaactcttcaatcacttctttccatcatcttcagaggacatttcgagtttgactcctcttgtagatcctctgtgtactttcctctatgatacatcgcgtcctaaacttattcacgaaacaaacctggatgttctttgtgaactggttaatatcctcaaagttgaagttctaggagaacagctgagcagacgggagaagtcattggctgggttacctccaacgctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0008K08.1" temp_strand="+" temp_description="C00HBa0008K08.1  CU928482.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0008K08 sequenced_by:sanger upload_account_name:uk">
        <position start="34049" stop="38875"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="34348" g_stop="34447" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="100" r_length="100" r_score="0.930"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="34448" i_stop="34599" i_length="152">
            <donor d_prob="0.996" d_score="0.96"/>
            <acceptor a_prob="0.415" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34600" g_stop="34704" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="101" r_stop="205" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="34705" i_stop="34881" i_length="177">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="0.995" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="34882" g_stop="34974" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="206" r_stop="298" r_length="93" r_score="0.978"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="34975" i_stop="35496" i_length="522">
            <donor d_prob="0.901" d_score="0.98"/>
            <acceptor a_prob="0.910" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="35497" g_stop="35585" g_length="89"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="387" r_length="89" r_score="0.966"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="35586" i_stop="38420" i_length="2835">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.659" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="38421" g_stop="38575" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="542" r_length="155" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0008K08.1" gen_strand="+" ref_id="SGN-E266187" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0008K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E266187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="34348" e_stop="34447"/>
          <exon e_start="34600" e_stop="34704"/>
          <exon e_start="34882" e_stop="34974"/>
          <exon e_start="35497" e_stop="35585"/>
          <exon e_start="38421" e_stop="38575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAGGCTGCAATACGAAGCAGTGGTGGTAGCAAAACATCTTTTGCCGAGGGTATAGAGTCATCTATAATATATGTACGCTTCAAGGCTGCAGCAAATGAGGTAATATTGGAACATCTCCTTGCGTTTTAGTTTATAGAAACTCTATTACTTCGTTGTATCAGAATGAGTATTTCTAATCTCAAAAAATAAAATAAAAATAGGACTAGCTTTAACGTGTAATCCATGAACTTAATGATCTTAGTTACCTGCAGCTTAAGCCTATCTTGGAGGAAATTGAAAGTAGAACACCTAGAAAAGAGTATATTCAACTTCTTGAAGAATGCCACAAACTCTATTGTGAACAGCGCCTTTCCTTGGTGAGTATAAGCTGCTCCATTTAGTTCTCTCTCTCTCTCTCTCTCTCTATCTATCTATCTATCTATATATATATATATATATATATATATATATATTACGGCTTTTTTCTTGGTTATATTTTTTCTTCTCCTTGTTTGCCATTTTAATTAGTACTCCTTCTGTTTCATTTAATTCAGATAAGAGGTATAGTGCAACAGCGGATCTCTGAATTTTCCAGGAAAGAAGCACTGTCGTCTTTAACTAGATCTGGATGTGCATATTTAATGCAGGTACATTTAAATGGCTTCAGTACTTTTTACAATATTTTGTACTAGAGAGCAGTATGATTGTTACATCTTGCCTTACAAATCTTTGATGACTGTTCTTTCTATGGTGATGGTGGTGGTTTTTTTTAGTGTTGATGGGGGTATCAGAAGAAGAAGATGAAAAGACACAATTCAACGTTGACCTCCCAGTCTTGATAGTCATATGAACAATCCACATTCATTTTTCTTTTTATTTCAAAGTAACTAGTTGTAAGAAAGTGAGTCACGTCTTACGTTTTCTTTTAATAGTTAGCTCATCTTAGTGTAGATGAATATTTCCTCTTAACTGGGTCTAGGATAAATGAGCTAAAGTTATGGCAGCCTTGGTTTCTTTGAGGAAGGAATCATATCTATATGTTTTTCTATGAATCACTATTGCCAAATATATATAGGAGGTTGCTTCTAAAAAAGTCTTGCTAAAGGCATATTAGTGTAAAATTGTGATATATGTCTCTCCATAATTTACCTTTGACACCGTAAATGCAGGTGTGTCAGCTAGAGCATCAACTTTTCAATCACTTCTTCCCATCATCTTCAGAGGACATTTCGAGTTTGACTCCTCTTGTAGATCCTCTGTGAGTTGCCTTACTTCTCTTGTGGGGTTGTTTCTGCATTTGAACCATTTTGCTTCTTGCATATTTCCTTTCCCGTTTTTTCTTTTCTAATTTTCTTCTTTTCCCTTTTCCTTGTCTTGGTTCGCTAGGGTGGGTAGGGGTGGGGGTGTGGAGGTTTGGATTATCTGTATTGTTTTTCATGCACCTTGTAAATAAGGAGCCAAAATTGCAATTTTTTTTGGTGCCTGTAAGACTGTCATTTTGGTAGCTTGTGCCGTGCAAGAGTTGCTATCAGTGGTAAGTTGGTGTAATCGTTTTCAGACATTATTCGAGTGCTAATAAAAATCTGTGTGGACTATGAGGCGGCCCAATAGCTTAGTGATTGTCAATTTAGATTTTAGGGCTAGCACAAGATTAGTTCCTGGTTTGGAATTTGAAGCCATCCTGTGGGATCTATGCCTATCTATTCCTTTGAAAGAGCCGCTCTGGTCTGGATTTGCACCTTGCTCCGACCATCAGTTATGAATATGTGCTATATTTATATATCAAGTTGGTCTGGTCAAAATTTGCTCCTGCGAAGCTTCAACTACTTTTTTGACCTTAAATTTTGGACTTCGAGTCACAAATGTGGAGGTTACATGTGAAACTTATAGCTACTTCAAGGCAAACAAGGTCCTTCGAGTATACGCCTTAACTTATTCTCCAAAACAAAAGTATAAGCTTTAACATCAAAGGTGGGTAAACCGTTACTTTTTGAAAAAGGCGGAAGAAAAATTATTTAAGTGAAGGGTAAGGAGTTGGCTCATTATCCATTAAGTTTCAAATCGTGTGCCAGTTGGCCCTTGGGGTTTCTCGGTCAGGTGGGAAAGCAGTCTTCTATGCCCGGAAAAGTAGAATCAGAAGTCTGGTCTTATTTGCTTTCATGAAGATTAAGATGTTTGAATTTGAATACACATCTGAATATTAAGTTCTAAATGGTGGTGGCGGTGATGGTTCTCGGTGGTAGTTGTGAGTAGTAGCTAGTGTTGATGGTCGGTGGTAGTAGTGGTGGGTGGTGGTAGTGGCAGCTAATAGTTTGCAGTGGATAATAGTGATAACTATTGGTGGTGTTGAATGATTACGGTGGTTTGACTATATATAGTGGTGATTGTCGGTAGTGATTAGTGTTTGTTGTGGTAATGGTGGTTGGTGCTGATAATTGTAAATGTGGCTAGTGGCGGTGATGATAGTTGGTGATCTAGCATCTAAATACATTTCATGGATCCTTGAAAGCTGTTTTAACATACCTGATTTGTTATAAAGAGGTAAGGTTCATGTCCCCCTCTTTTTTTGTACAATATTTTTGATGTACAATGTAGGGGCCAAGCTAAATCTTCCACTCGTAGTAGAAGTAGACCACTAGAGACGTATTAAAAAAATAATAAGAAGTGGCAGTATTGGCAGTGGTGGTGGTTGTGGGTAAGGATGGCGGTAGTTGATAATTTTGGGCGGTAAGCCGGGAACGTGAATGGATGAAATTGTTGAACTACCATATTTGTAGAATTTTCTAAAAAGATATCTTAATGATATTAAGACTTGATTTTAGTAATTTAGATCTATTCAGACTCGTTAAGTGGTTGTAACATGAAAAAAACAAATGCATTTAAGATTTGAATAATTCAGATCTAAAAATAATCGGACTTAATGACTGAGATGTGAATGGTTAGGATTAAGACCATCATTAAGTGCAGACAAATGAGGCCTAAGGAAACCTAATTGTTGTCAATTACTACATGTTATGTGCTTCTTTGTGAATTATCTCTTTGCTGACTCCTCTCACTATCTGGGGTTTCCACTCATTTCCCCATTGTTGATACATAAAACTAGATGTCCATTGCACCTGTATCTTTCGTTTTGTTCATAAGTTTTCTTTTTTCCTTCTCTGGGTGTTTTAACTTACATGTATGTCCTTCCTGATTGTTGGGCAGAGAGACAGAAAGCCTTGCGCTTTTACCCATCAAAATTTGACCTGGAGTATAAGCTTCATCATTTTTATAGTTTTTCTTGTCAAGTTAATGTGATCAGATAATATCAATGAAGTGAGTTCAGTTTCTAAAAGCATCAATAGAGTGAGCTATGGTTACTGATAGTTAATCTAATGGCAGATTTTCGATGTCGGTAAGTTTAATCAGTAGTGGAACGTGTACCTTTTATATATAAAAAGGTAGGGGAACATGTTATCCAGTTCACTTGATAGTACTCTTCTCTTTGCTCCATTCTTTTTATTGGAGATATGCATTCAGATATTCTCTGCCTCCTGCATTCTCAAGCTATATTTTTACTTGCATCCTTTGTTTGTAAATAAGATTATTTATGTTGTCCATGAGAAGTCATATTTTGAACTTATGTCCCAGCACAATTACATTTCCTTGTTATCATTTATCTCTGCATAACATGATATGAATATTCTGTGCATAGCATCTAAATCCACATGCACCTGACCCATCTCTCATTTGGTCCAGTTACAGCAGTTTAATGAAGCGTTGACATGTTATACTCCTTCCGTCCATTTTAGGTGACAGAGTTTAAAAAAGAAAGAAAGACTTTTGAAACTTGTGGTCTAACAGGTCATAGACATTTATGTGACTATAAAACATATCATTAAGCATAGAAATGTAAGTTTAAAGTTGAATAGTTATCAAAAAGGAAGAGGTGTCATTCTTTTTTGGATAGACTAAAAAGGAAAGTGTGTTGCATAAAATGGGACGGAGGAAGTATTATCTATGTGCCCCTGAAGCTGCTGGAACTTGAACTTTGTTTTTTTGATGATAAGTAACTTGATCATTAAGGTTACAATTACCTCCCTACCAACTGCAGGTGTACTTTCCTCTATGATACATTGCGTCCTAAACTTATTCACGAAACAAATCTGGATGTTCTTTGTGAACTGGTTGATATCCTTAAAGTTGAAGTTCTAGGAGAACAATTGAGCAGACGGGGGGAATCATTGGCTGGGCTACGTCCAACGCTGG</genome_strand>
        <mrna_strand>TCAGGCTGCAATAAGAAGCAGCGGTGGTAACAAGACATCTTTTGCCGAGGGTATAGAGCCATCTATAATATATGTACGATTCAAGGCTGCAGCAAATGAG........................................................................................................................................................CTTAAGCCTATCCTGGAGGAAATTGAAAGCAGAACACCTAGAAAAGAGTATATTCAACTTCTTGAAGAATGCCACAAACTCTATTGCGAACAGCGCCTTTCCTTG.................................................................................................................................................................................ATAAGAGGTATAGTGCAACAGCGGATCTCTGAATTTTCTAGGAAAGAAGCATTGTCGTCTTTAACTAGATCTGGATGTGCATATTTAATGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTCAGCTGGAGCATCAACTCTTCAATCACTTCTTTCCATCATCTTCAGAGGACATTTCGAGTTTGACTCCTCTTGTAGATCCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACTTTCCTCTATGATACATCGCGTCCTAAACTTATTCACGAAACAAACCTGGATGTTCTTTGTGAACTGGTTAATATCCTCAAAGTTGAAGTTCTAGGAGAACAGCTGAGCAGACGGGAGAAGTCATTGGCTGGGTTACCTCCAACGCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E252285" ref_strand="+" ref_description="SGN-E252285 [cLEG-12-F23]">
      <seq>cttcttcccatcatcttcagaggacatttcgagtttgactcctcttgtagatcctctgtgtactttcctctatgatacattgcgtcctaaacttattcacgaaacaaatctggatgttctttgtgaactggttgatatccttaaagttgaagttctaggagaacaattgagcagacggggggaatcattggctgggctacgtccaacgctggacagaattctagcagatgtacatgagcgattaacttttcgttctcgcacctatatccgtgatgagattgcaaattaccttccttcagaggaggatctggattaccctaaaaagttggagcaatctgtttcagcagaactggattcaccatctactgaactaaatcaagatgtttccggaacttggtatcctccactggagaaaaccatatcatgtctatcaaaactgtactgttctctagaaacagctgtttttactggattggctcaggaagctgtagagttttgctcgttatccattcaaaaagctagcaaacttattggcaaaagatcgtcatcaatggatgcacaacttttcctaataaagcatctactcatcctgagggagcagattgccccattcgacatagaattttcagtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0008K08.1" temp_strand="+" temp_description="C00HBa0008K08.1  CU928482.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0008K08 sequenced_by:sanger upload_account_name:uk">
        <position start="35229" stop="41575"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="35529" g_stop="35585" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="57" r_length="57" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="35586" i_stop="38420" i_length="2835">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.659" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38421" g_stop="38640" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="58" r_stop="277" r_length="220" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38641" i_stop="39977" i_length="1337">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="39978" g_stop="40064" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="278" r_stop="364" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40065" i_stop="40711" i_length="647">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40712" g_stop="40828" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="481" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40829" i_stop="40914" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="40915" g_stop="40947" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="482" r_stop="514" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="40948" i_stop="41080" i_length="133">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41081" g_stop="41167" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="515" r_stop="601" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="41168" i_stop="41244" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="41245" g_stop="41275" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="632" r_length="31" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0008K08.1" gen_strand="+" ref_id="SGN-E252285" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0008K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252285" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="35529" e_stop="35585"/>
          <exon e_start="38421" e_stop="38640"/>
          <exon e_start="39978" e_stop="40064"/>
          <exon e_start="40712" e_stop="40828"/>
          <exon e_start="40915" e_stop="40947"/>
          <exon e_start="41081" e_stop="41167"/>
          <exon e_start="41245" e_stop="41275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTTCCCATCATCTTCAGAGGACATTTCGAGTTTGACTCCTCTTGTAGATCCTCTGTGAGTTGCCTTACTTCTCTTGTGGGGTTGTTTCTGCATTTGAACCATTTTGCTTCTTGCATATTTCCTTTCCCGTTTTTTCTTTTCTAATTTTCTTCTTTTCCCTTTTCCTTGTCTTGGTTCGCTAGGGTGGGTAGGGGTGGGGGTGTGGAGGTTTGGATTATCTGTATTGTTTTTCATGCACCTTGTAAATAAGGAGCCAAAATTGCAATTTTTTTTGGTGCCTGTAAGACTGTCATTTTGGTAGCTTGTGCCGTGCAAGAGTTGCTATCAGTGGTAAGTTGGTGTAATCGTTTTCAGACATTATTCGAGTGCTAATAAAAATCTGTGTGGACTATGAGGCGGCCCAATAGCTTAGTGATTGTCAATTTAGATTTTAGGGCTAGCACAAGATTAGTTCCTGGTTTGGAATTTGAAGCCATCCTGTGGGATCTATGCCTATCTATTCCTTTGAAAGAGCCGCTCTGGTCTGGATTTGCACCTTGCTCCGACCATCAGTTATGAATATGTGCTATATTTATATATCAAGTTGGTCTGGTCAAAATTTGCTCCTGCGAAGCTTCAACTACTTTTTTGACCTTAAATTTTGGACTTCGAGTCACAAATGTGGAGGTTACATGTGAAACTTATAGCTACTTCAAGGCAAACAAGGTCCTTCGAGTATACGCCTTAACTTATTCTCCAAAACAAAAGTATAAGCTTTAACATCAAAGGTGGGTAAACCGTTACTTTTTGAAAAAGGCGGAAGAAAAATTATTTAAGTGAAGGGTAAGGAGTTGGCTCATTATCCATTAAGTTTCAAATCGTGTGCCAGTTGGCCCTTGGGGTTTCTCGGTCAGGTGGGAAAGCAGTCTTCTATGCCCGGAAAAGTAGAATCAGAAGTCTGGTCTTATTTGCTTTCATGAAGATTAAGATGTTTGAATTTGAATACACATCTGAATATTAAGTTCTAAATGGTGGTGGCGGTGATGGTTCTCGGTGGTAGTTGTGAGTAGTAGCTAGTGTTGATGGTCGGTGGTAGTAGTGGTGGGTGGTGGTAGTGGCAGCTAATAGTTTGCAGTGGATAATAGTGATAACTATTGGTGGTGTTGAATGATTACGGTGGTTTGACTATATATAGTGGTGATTGTCGGTAGTGATTAGTGTTTGTTGTGGTAATGGTGGTTGGTGCTGATAATTGTAAATGTGGCTAGTGGCGGTGATGATAGTTGGTGATCTAGCATCTAAATACATTTCATGGATCCTTGAAAGCTGTTTTAACATACCTGATTTGTTATAAAGAGGTAAGGTTCATGTCCCCCTCTTTTTTTGTACAATATTTTTGATGTACAATGTAGGGGCCAAGCTAAATCTTCCACTCGTAGTAGAAGTAGACCACTAGAGACGTATTAAAAAAATAATAAGAAGTGGCAGTATTGGCAGTGGTGGTGGTTGTGGGTAAGGATGGCGGTAGTTGATAATTTTGGGCGGTAAGCCGGGAACGTGAATGGATGAAATTGTTGAACTACCATATTTGTAGAATTTTCTAAAAAGATATCTTAATGATATTAAGACTTGATTTTAGTAATTTAGATCTATTCAGACTCGTTAAGTGGTTGTAACATGAAAAAAACAAATGCATTTAAGATTTGAATAATTCAGATCTAAAAATAATCGGACTTAATGACTGAGATGTGAATGGTTAGGATTAAGACCATCATTAAGTGCAGACAAATGAGGCCTAAGGAAACCTAATTGTTGTCAATTACTACATGTTATGTGCTTCTTTGTGAATTATCTCTTTGCTGACTCCTCTCACTATCTGGGGTTTCCACTCATTTCCCCATTGTTGATACATAAAACTAGATGTCCATTGCACCTGTATCTTTCGTTTTGTTCATAAGTTTTCTTTTTTCCTTCTCTGGGTGTTTTAACTTACATGTATGTCCTTCCTGATTGTTGGGCAGAGAGACAGAAAGCCTTGCGCTTTTACCCATCAAAATTTGACCTGGAGTATAAGCTTCATCATTTTTATAGTTTTTCTTGTCAAGTTAATGTGATCAGATAATATCAATGAAGTGAGTTCAGTTTCTAAAAGCATCAATAGAGTGAGCTATGGTTACTGATAGTTAATCTAATGGCAGATTTTCGATGTCGGTAAGTTTAATCAGTAGTGGAACGTGTACCTTTTATATATAAAAAGGTAGGGGAACATGTTATCCAGTTCACTTGATAGTACTCTTCTCTTTGCTCCATTCTTTTTATTGGAGATATGCATTCAGATATTCTCTGCCTCCTGCATTCTCAAGCTATATTTTTACTTGCATCCTTTGTTTGTAAATAAGATTATTTATGTTGTCCATGAGAAGTCATATTTTGAACTTATGTCCCAGCACAATTACATTTCCTTGTTATCATTTATCTCTGCATAACATGATATGAATATTCTGTGCATAGCATCTAAATCCACATGCACCTGACCCATCTCTCATTTGGTCCAGTTACAGCAGTTTAATGAAGCGTTGACATGTTATACTCCTTCCGTCCATTTTAGGTGACAGAGTTTAAAAAAGAAAGAAAGACTTTTGAAACTTGTGGTCTAACAGGTCATAGACATTTATGTGACTATAAAACATATCATTAAGCATAGAAATGTAAGTTTAAAGTTGAATAGTTATCAAAAAGGAAGAGGTGTCATTCTTTTTTGGATAGACTAAAAAGGAAAGTGTGTTGCATAAAATGGGACGGAGGAAGTATTATCTATGTGCCCCTGAAGCTGCTGGAACTTGAACTTTGTTTTTTTGATGATAAGTAACTTGATCATTAAGGTTACAATTACCTCCCTACCAACTGCAGGTGTACTTTCCTCTATGATACATTGCGTCCTAAACTTATTCACGAAACAAATCTGGATGTTCTTTGTGAACTGGTTGATATCCTTAAAGTTGAAGTTCTAGGAGAACAATTGAGCAGACGGGGGGAATCATTGGCTGGGCTACGTCCAACGCTGGACAGAATTCTAGCAGATGTACATGAGCGATTAACTTTTCGTTCTCGCACCTATATCCGTGATGAGGTAACATCCCAAGTATTGCTCGGGCATTTCAATTAAATGCTGTTTGGCGGCTTATCTGTTACTCAGACATGAGATAATATTATGCGAAACTTTGCGCATATTATTGTGCCACTCACTTTAATCTCTTTAATTTTCCTTTCCGCTTTCTTTGACTTTACCAGTTAATTAGCATTCTCATGGATAGATGAATAGTGCCAAAATTAGTTACAGGATAAATTAGGACTTCTTTTCTGTTGCATAGATTTTGGTTAAAAATGGAATGTTCATTTATACCAAACATAAGCAGGTAGCATCTCATGGTATATACTATATACTGTTGTTCAATATCTTAAACTTTTTCTCTTTATTGTTCTCGTAGCTGTACTATCTTCCATTGCTGTGATATGTAGTACCTTCCAAACAGAATAGCCCATTAGTGAAAATGAAGGATTTTTCATTGGATTTTGAAACACTTATCGTTTCAATTCTTTCCTATGATTGGCTTATCATGACAATGTACTCGAAAGTTGACCCTTGCACAGTGGAAGGAATATGCTTTGCGGCAGACTTCTGACAATTGGACATATCCAAGAGGCTCTTGAGTGAATTATACCAATTTATGTGATGTGGAGTAACCTTTTGGAATTTAAACCTAGTATGTACTTCATCCCTTTCTGATTACCTGGTTTCACTTAGTGTTGGACATACTAAGGAAAAATAGAAATCATAAAAGGTTGTACATTATAGTTTTTCTCTTTTTTGCAAACCCAAAGCCCCGAAAGAGAGAAAATTCCAGCCAAAGGCCTTCCAAGTTACAACTCTGTCTACTTATTTACAAGTTCATGGAAAAATATAGGCCTATCCATCATTATGAGGAAATGCTTTCGTGTTCACCTTATTTTTGGCATTGTTGATTTGATATTTGTTCAATGTTCATTCGGTTCCCGAGCTAATCTTTTCTCCTTCCTGCCATACTTCCCTTTCTGCTTTGTGCATCATTTGTTTGGATTAATAATGCAAAGTGGTATGAGCTTCAATGTTGTATAACTTCACTTGAGATGTGTTTAAATGGGAAACATGGTCAGGATGATTCGTATAGCTGGTCCCAACTAGTTCCGAGTGAGGCTTACTAGTTGTTGGTAGGAGTTCCAATGGATTTGTATGGAGATGAAAAATGTCGTCTATTAGGGAATATGATAAGTTGGGATTGATAAGAAAAGGAAATTAGACCATATAAGTTGGGGTGACTGGAGTAAAGTGCACATGTATGTTTGGTTTCTGTATGCTTGAACTTCCTCAGATGTAACCAGTGGTCTACAAATAATTTGGTCTGCATTCTTTCCCTGCTTTGTTTTCAGATTGCAAATTACCTTCCTTCAGAGGAGGATCTGGATTACCCTAAAAAGTTGGAGCAATCTGTTTCAGCAGAACTGGATTCACCATCTGTAAGTGCCAAACTCCTTGTCCTGTGACGTGTATTCAGTTGAATTCTACATATATCTTTAGAGGAAGTAAGATCTAGGATGGCTTTTATCTTTATCTTTTTTTGGATCTTTGTACTTTTTTAATGGAGAAGTTTGCATTCTCTTATGAAGGTTCTGTTAATCAATATCTTGCTTAATGGTGTGAACTGACTCTTCTTGACCTGTGATTCTAGTTGGATGACATTTATTGTACAGTTCGAACTACAAAGCAAGCTATATTAAAGTTGAAGGTGTAAAAATTGGAAATTTAGAGGTCTGGTGGAATTTGTATATTAAAATTCTTTTTTCTTTTAAGAAAGAGTTCTAGGATTTGTGGTAGTATAGACTATAGAGCTTTTAATTGGTTATTTTATTTTCAATAGGTCAAATGTGCTGCTTTAGCAACTTTCACTAAGACTTGGTGTATATCGATAAAATTGTTTTAGAAGAAGATAAGTTAACTATTGCTGATTTATTTAACTTGAATTTGTTTTTTTGCTGATACTTTTCCTGCCTCTTTGCTGTCAAACATGATTTCTGCATTTTTGCACCATATTCTATGTATCAGTTTTTTTTCTTTTGCTACTTTGCACCATATTCTCTGATTCCTTATTTTAAATTTGGTACAGACTGAACTAAATCAAGATGTTTCCGGAACTTGGTATCCTCCACTGGAGAAAACCATATCATGTCTATCAAAACTGTACTGTTCTCTAGAAACAGCTGTTTTTACTGGATTGGCTCAGGTAAGCAGTTGGTTTCTATTAGTGTCCCTTTTAATTGTAGCCAGATGTTACTGGATCCTTATTTTCTCTTCTTTTTTTTTTCTCAGGAAGCTGTAGAGTTTTGCTCGTTATCCATTCAAGTAAGTTTTCTTCTTTATTGAAGTTCATGTATTCTGTTCTGCTGATTATGCTGTTAAAATTTGTAATCTTGTATTATTCATATTTTTTTGTTCAATATGCTGTTTGTTATTGCTGAACTTCTAATTCCTTCAGAAAGCTAGCAAACTTATTGGCAAAAGATCGTCATCAATGGATGCACAACTTTTCCTAATAAAGCATCTACTCATCCTGAGGGAGCAGGCAGGTTTCTCTTACCTGCTTATGAAATTCCTAGTTATTGTCATAGCTGCTGGATTCTAACTTAAGATGCCTTCCAGATTGCCCCATTCGACATAGAATTTTCAGTCA</genome_strand>
        <mrna_strand>CTTCTTCCCATCATCTTCAGAGGACATTTCGAGTTTGACTCCTCTTGTAGATCCTCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTACTTTCCTCTATGATACATTGCGTCCTAAACTTATTCACGAAACAAATCTGGATGTTCTTTGTGAACTGGTTGATATCCTTAAAGTTGAAGTTCTAGGAGAACAATTGAGCAGACGGGGGGAATCATTGGCTGGGCTACGTCCAACGCTGGACAGAATTCTAGCAGATGTACATGAGCGATTAACTTTTCGTTCTCGCACCTATATCCGTGATGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAATTACCTTCCTTCAGAGGAGGATCTGGATTACCCTAAAAAGTTGGAGCAATCTGTTTCAGCAGAACTGGATTCACCATCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAACTAAATCAAGATGTTTCCGGAACTTGGTATCCTCCACTGGAGAAAACCATATCATGTCTATCAAAACTGTACTGTTCTCTAGAAACAGCTGTTTTTACTGGATTGGCTCAG......................................................................................GAAGCTGTAGAGTTTTGCTCGTTATCCATTCAA.....................................................................................................................................AAAGCTAGCAAACTTATTGGCAAAAGATCGTCATCAATGGATGCACAACTTTTCCTAATAAAGCATCTACTCATCCTGAGGGAGCAG.............................................................................ATTGCCCCATTCGACATAGAATTTTCAGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E333894" ref_strand="+" ref_description="SGN-E333894 [cTOD-24-G24]">
      <seq>gttgatatccttaaagttgaagttctaggagaacaattgagcagacggggggaatcattggctgggctacgtccaacgctggacagaattctagcagatgtacatgagcgattaacttttcgttctcgcacctatatccgtgatgagattgcaaattaccttccttcagaggaggatctggattaccctaaaaagttggagcaatctgtttcagcagaactggattcaccatctactgaactaaatcaagatgtttccggaacttggtatcctccactggagaaaaccatatcatgtctatcaaaactgtactgttctctagaaacagctgtttttactggattgggctcaggaagctgtagagttttgctcgttatccattcaaaaagctagcaaacttattgggcaaagatcgtcatcaatggatgcancaactttccctataaagcatctactcatccctgaggagcagattgccccattcgacataaattttcagtcacgcataaggaacttgatttttcacatttgctggagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0008K08.1" temp_strand="+" temp_description="C00HBa0008K08.1  CU928482.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0008K08 sequenced_by:sanger upload_account_name:uk">
        <position start="38194" stop="41610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38494" g_stop="38640" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38641" i_stop="39977" i_length="1337">
            <donor d_prob="0.955" d_score="1.00"/>
            <acceptor a_prob="0.991" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="39978" g_stop="40064" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="234" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40065" i_stop="40711" i_length="647">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40712" g_stop="40828" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="352" r_length="118" r_score="0.983"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40829" i_stop="40914" i_length="86">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.886" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="40915" g_stop="40947" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="353" r_stop="385" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="40948" i_stop="41080" i_length="133">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41081" g_stop="41167" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="386" r_stop="472" r_length="87" r_score="0.885"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41168" i_stop="41244" i_length="77">
            <donor d_prob="0.999" d_score="0.84"/>
            <acceptor a_prob="0.613" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="41245" g_stop="41307" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="473" r_stop="534" r_length="62" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0008K08.1" gen_strand="+" ref_id="SGN-E333894" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>534</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0008K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E333894" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38494" e_stop="38640"/>
          <exon e_start="39978" e_stop="40064"/>
          <exon e_start="40712" e_stop="40828"/>
          <exon e_start="40915" e_stop="40947"/>
          <exon e_start="41081" e_stop="41167"/>
          <exon e_start="41245" e_stop="41307"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATATCCTTAAAGTTGAAGTTCTAGGAGAACAATTGAGCAGACGGGGGGAATCATTGGCTGGGCTACGTCCAACGCTGGACAGAATTCTAGCAGATGTACATGAGCGATTAACTTTTCGTTCTCGCACCTATATCCGTGATGAGGTAACATCCCAAGTATTGCTCGGGCATTTCAATTAAATGCTGTTTGGCGGCTTATCTGTTACTCAGACATGAGATAATATTATGCGAAACTTTGCGCATATTATTGTGCCACTCACTTTAATCTCTTTAATTTTCCTTTCCGCTTTCTTTGACTTTACCAGTTAATTAGCATTCTCATGGATAGATGAATAGTGCCAAAATTAGTTACAGGATAAATTAGGACTTCTTTTCTGTTGCATAGATTTTGGTTAAAAATGGAATGTTCATTTATACCAAACATAAGCAGGTAGCATCTCATGGTATATACTATATACTGTTGTTCAATATCTTAAACTTTTTCTCTTTATTGTTCTCGTAGCTGTACTATCTTCCATTGCTGTGATATGTAGTACCTTCCAAACAGAATAGCCCATTAGTGAAAATGAAGGATTTTTCATTGGATTTTGAAACACTTATCGTTTCAATTCTTTCCTATGATTGGCTTATCATGACAATGTACTCGAAAGTTGACCCTTGCACAGTGGAAGGAATATGCTTTGCGGCAGACTTCTGACAATTGGACATATCCAAGAGGCTCTTGAGTGAATTATACCAATTTATGTGATGTGGAGTAACCTTTTGGAATTTAAACCTAGTATGTACTTCATCCCTTTCTGATTACCTGGTTTCACTTAGTGTTGGACATACTAAGGAAAAATAGAAATCATAAAAGGTTGTACATTATAGTTTTTCTCTTTTTTGCAAACCCAAAGCCCCGAAAGAGAGAAAATTCCAGCCAAAGGCCTTCCAAGTTACAACTCTGTCTACTTATTTACAAGTTCATGGAAAAATATAGGCCTATCCATCATTATGAGGAAATGCTTTCGTGTTCACCTTATTTTTGGCATTGTTGATTTGATATTTGTTCAATGTTCATTCGGTTCCCGAGCTAATCTTTTCTCCTTCCTGCCATACTTCCCTTTCTGCTTTGTGCATCATTTGTTTGGATTAATAATGCAAAGTGGTATGAGCTTCAATGTTGTATAACTTCACTTGAGATGTGTTTAAATGGGAAACATGGTCAGGATGATTCGTATAGCTGGTCCCAACTAGTTCCGAGTGAGGCTTACTAGTTGTTGGTAGGAGTTCCAATGGATTTGTATGGAGATGAAAAATGTCGTCTATTAGGGAATATGATAAGTTGGGATTGATAAGAAAAGGAAATTAGACCATATAAGTTGGGGTGACTGGAGTAAAGTGCACATGTATGTTTGGTTTCTGTATGCTTGAACTTCCTCAGATGTAACCAGTGGTCTACAAATAATTTGGTCTGCATTCTTTCCCTGCTTTGTTTTCAGATTGCAAATTACCTTCCTTCAGAGGAGGATCTGGATTACCCTAAAAAGTTGGAGCAATCTGTTTCAGCAGAACTGGATTCACCATCTGTAAGTGCCAAACTCCTTGTCCTGTGACGTGTATTCAGTTGAATTCTACATATATCTTTAGAGGAAGTAAGATCTAGGATGGCTTTTATCTTTATCTTTTTTTGGATCTTTGTACTTTTTTAATGGAGAAGTTTGCATTCTCTTATGAAGGTTCTGTTAATCAATATCTTGCTTAATGGTGTGAACTGACTCTTCTTGACCTGTGATTCTAGTTGGATGACATTTATTGTACAGTTCGAACTACAAAGCAAGCTATATTAAAGTTGAAGGTGTAAAAATTGGAAATTTAGAGGTCTGGTGGAATTTGTATATTAAAATTCTTTTTTCTTTTAAGAAAGAGTTCTAGGATTTGTGGTAGTATAGACTATAGAGCTTTTAATTGGTTATTTTATTTTCAATAGGTCAAATGTGCTGCTTTAGCAACTTTCACTAAGACTTGGTGTATATCGATAAAATTGTTTTAGAAGAAGATAAGTTAACTATTGCTGATTTATTTAACTTGAATTTGTTTTTTTGCTGATACTTTTCCTGCCTCTTTGCTGTCAAACATGATTTCTGCATTTTTGCACCATATTCTATGTATCAGTTTTTTTTCTTTTGCTACTTTGCACCATATTCTCTGATTCCTTATTTTAAATTTGGTACAGACTGAACTAAATCAAGATGTTTCCGGAACTTGGTATCCTCCACTGGAGAAAACCATATCATGTCTATCAAAACTGTACTGTTCTCTAGAAACAGCTGTTTTTACTGGATT-GGCTCAGGTAAGCAGTTGGTTTCTATTAGTGTCCCTTTTAATTGTAGCCAGATGTTACTGGATCCTTATTTTCTCTTCTTTTTTTTTTCTCAGGAAGCTGTAGAGTTTTGCTCGTTATCCATTCAAGTAAGTTTTCTTCTTTATTGAAGTTCATGTATTCTGTTCTGCTGATTATGCTGTTAAAATTTGTAATCTTGTATTATTCATATTTTTTTGTTCAATATGCTGTTTGTTATTGCTGAACTTCTAATTCCTTCAGAAAGCTAGCAAACTTATTGGCAAAAGATCGTCATCAATGGATGCA-CAACTTTTCCTAATAAAGCATCTACTCATCCTGAGGGAGCAGGCAGGTTTCTCTTACCTGCTTATGAAATTCCTAGTTATTGTCATAGCTGCTGGATTCTAACTTAAGATGCCTTCCAGATTGCCCCATTCGACATAGAATTTTCAGTCACGCATAAGGAACTTGATTTTTCACATTTGCTG</genome_strand>
        <mrna_strand>GTTGATATCCTTAAAGTTGAAGTTCTAGGAGAACAATTGAGCAGACGGGGGGAATCATTGGCTGGGCTACGTCCAACGCTGGACAGAATTCTAGCAGATGTACATGAGCGATTAACTTTTCGTTCTCGCACCTATATCCGTGATGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCAAATTACCTTCCTTCAGAGGAGGATCTGGATTACCCTAAAAAGTTGGAGCAATCTGTTTCAGCAGAACTGGATTCACCATCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAACTAAATCAAGATGTTTCCGGAACTTGGTATCCTCCACTGGAGAAAACCATATCATGTCTATCAAAACTGTACTGTTCTCTAGAAACAGCTGTTTTTACTGGATTGGGCTCAG......................................................................................GAAGCTGTAGAGTTTTGCTCGTTATCCATTCAA.....................................................................................................................................AAAGCTAGCAAACTTATTGGGCAAAGATCGTCATCAATGGATGCANCAACTTTCCCT-ATAAAGCATCTACTCATCCCTGAGGAGCAG.............................................................................ATTGCCCCATTCGACATA-AATTTTCAGTCACGCATAAGGAACTTGATTTTTCACATTTGCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E698349" ref_strand="+" ref_description="SGN-E698349 [FA06AB04]">
      <seq>ccattagttggagcaatctgtttcagcagaactggattcaccatctactgaactaaatcaagatgtttccggaacttggtatcctccactggagaaaaccatatcatgtctatcaaaactgtactgttctctagaaacagctgtttttactggattggctcaggaagctgtagagttttgctcgttatccattcaaaaagctagcaaacttattggcaaaagatcgtcatcaatggatgcacaacttttcctaataaagcatctactcatcctgagggagcagattgccccattcgacatagaattttcagtcacgcataaggaacttgatttttcacatttgctggagcatctgaggcggattctaaggggtcaggcatcaatctttgactggtcgagatcaacttcattagctagaactttatctccacgagttttggaaagtcaaattgacgccaagaaggaattggagaaaagcctgaaaactacttgtgaggagttcattatgtcagtgactaagttagttgtggaaccattgctttcttttgtgacaaaggttacggctgttaaagttgcattatctagtagtcaaaatcaaaaactggagtctgggattgcaaagccactcaaggatcatgcttttgcttcaccagaaaagattgccgagcttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0008K08.1" temp_strand="+" temp_description="C00HBa0008K08.1  CU928482.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0008K08 sequenced_by:sanger upload_account_name:uk">
        <position start="39724" stop="48310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40019" g_stop="40064" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40065" i_stop="40711" i_length="647">
            <donor d_prob="0.991" d_score="0.91"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="40712" g_stop="40828" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="163" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="40829" i_stop="40914" i_length="86">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.886" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="40915" g_stop="40947" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="196" r_length="33" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="40948" i_stop="41080" i_length="133">
            <donor d_prob="0.978" d_score="0.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="41081" g_stop="41167" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="283" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="41168" i_stop="41244" i_length="77">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.613" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="41245" g_stop="41307" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="284" r_stop="346" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="41308" i_stop="42398" i_length="1091">
            <donor d_prob="0.899" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="42399" g_stop="42515" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="347" r_stop="463" r_length="117" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="42516" i_stop="46024" i_length="3509">
            <donor d_prob="0.997" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="46025" g_stop="46117" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="556" r_length="93" r_score="0.989"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="46118" i_stop="47893" i_length="1776">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.957" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="47894" g_stop="48010" g_length="117"/>
          <reference_exon_boundary r_type="cDNA" r_start="557" r_stop="673" r_length="117" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0008K08.1" gen_strand="+" ref_id="SGN-E698349" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0008K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698349" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40019" e_stop="40064"/>
          <exon e_start="40712" e_stop="40828"/>
          <exon e_start="40915" e_stop="40947"/>
          <exon e_start="41081" e_stop="41167"/>
          <exon e_start="41245" e_stop="41307"/>
          <exon e_start="42399" e_stop="42515"/>
          <exon e_start="46025" e_stop="46117"/>
          <exon e_start="47894" e_stop="48010"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAAGTTGGAGCAATCTGTTTCAGCAGAACTGGATTCACCATCTGTAAGTGCCAAACTCCTTGTCCTGTGACGTGTATTCAGTTGAATTCTACATATATCTTTAGAGGAAGTAAGATCTAGGATGGCTTTTATCTTTATCTTTTTTTGGATCTTTGTACTTTTTTAATGGAGAAGTTTGCATTCTCTTATGAAGGTTCTGTTAATCAATATCTTGCTTAATGGTGTGAACTGACTCTTCTTGACCTGTGATTCTAGTTGGATGACATTTATTGTACAGTTCGAACTACAAAGCAAGCTATATTAAAGTTGAAGGTGTAAAAATTGGAAATTTAGAGGTCTGGTGGAATTTGTATATTAAAATTCTTTTTTCTTTTAAGAAAGAGTTCTAGGATTTGTGGTAGTATAGACTATAGAGCTTTTAATTGGTTATTTTATTTTCAATAGGTCAAATGTGCTGCTTTAGCAACTTTCACTAAGACTTGGTGTATATCGATAAAATTGTTTTAGAAGAAGATAAGTTAACTATTGCTGATTTATTTAACTTGAATTTGTTTTTTTGCTGATACTTTTCCTGCCTCTTTGCTGTCAAACATGATTTCTGCATTTTTGCACCATATTCTATGTATCAGTTTTTTTTCTTTTGCTACTTTGCACCATATTCTCTGATTCCTTATTTTAAATTTGGTACAGACTGAACTAAATCAAGATGTTTCCGGAACTTGGTATCCTCCACTGGAGAAAACCATATCATGTCTATCAAAACTGTACTGTTCTCTAGAAACAGCTGTTTTTACTGGATTGGCTCAGGTAAGCAGTTGGTTTCTATTAGTGTCCCTTTTAATTGTAGCCAGATGTTACTGGATCCTTATTTTCTCTTCTTTTTTTTTTCTCAGGAAGCTGTAGAGTTTTGCTCGTTATCCATTCAAGTAAGTTTTCTTCTTTATTGAAGTTCATGTATTCTGTTCTGCTGATTATGCTGTTAAAATTTGTAATCTTGTATTATTCATATTTTTTTGTTCAATATGCTGTTTGTTATTGCTGAACTTCTAATTCCTTCAGAAAGCTAGCAAACTTATTGGCAAAAGATCGTCATCAATGGATGCACAACTTTTCCTAATAAAGCATCTACTCATCCTGAGGGAGCAGGCAGGTTTCTCTTACCTGCTTATGAAATTCCTAGTTATTGTCATAGCTGCTGGATTCTAACTTAAGATGCCTTCCAGATTGCCCCATTCGACATAGAATTTTCAGTCACGCATAAGGAACTTGATTTTTCACATTTGCTGGTGAGTATTGAGTATCTGCCATTTATGCTGGTATTCATTTTTTCGTTGTCCACCACTTTTCTGCTGCAGATGTATATTTCTTTAATAATTTCATTATCACACTTGGAGAAGAAGCTCTTTTTGGATATATTTTTGGTTTGTTATAAAGGCAGAGTTTACTAGTGAAAGAATGGAGATGGGTTATTCTTTGTTAGCTCTTGTTATAAGACTTACTAGTGAGAGGGGAAGATACTTACCCCACGACTCTATTTAGATTCCTAGAGCTTCGAGGAAGGTGTGTTTCTTTGTATGGTTGGTGGGAAGGGGTGCGGTCTTAAAAGCGGCAAATTTGAGGAGGATCACCTTTGTTAGTTGGTGCGTTATGGGTAAGTGTGCATGAGAAAAACAATGTGTCTAATCGGTCATGGAGGGTGGCCGTCAACTTGTTTAGGATGCAATGGGTGATGTCAGGCATAGTGAAGGAGGCATGACAAAGTTAGATGTCGGGCACAATGAAGGATGCTTTACAAAGCTGGACTCATAAGAGGGGGAAGAGAAACTTTAGGGCATACAGTGTTGCCCGTTTAGCAATCATGTGGGTCATTTGGAAAGGGAGAAATAGGAGGGCATGCAAAGGAGTGGAGCAAGACTCGTATAATTGCAGAGTAGCGTTTTGTCTCTAGTTTCTCTTTTGGTGTACTTTCGAGGTCCCTATTTGCATAGAGGATTGAATCTCTTATGTTGAGAACCATATTTTGATCTAGGCTCTCTTCTTTTGATATACGGCTTGTATACGGGCTACTACCCCCGTTTGTTAACAAAATGATTTACCTTCTCAAAAAGAATAATTCTATCATTTTATAGTGAAACGGACCATCAGTTTAAGCCTTCAAATCTGAGCTTTGAAACTGTGCGTAACTGATCCTCGGGGATTCTCGGTTATAATCAAATGATTATCTAATCACATCTCAGCCATTGAGCAGCTCCTATTCTGTAGTGGAATGGACCATCAGTTTAAGCCTTCAAATCTCATGCTACATGTGTCCAATTTCTTAGCTATACAATGTTTGATTGACTGTTAGATTGTAAGAGTTACTTTTATAAATTTTCAGGAGCATCTGAGGCGGATTCTAAGGGGTCAGGCATCAATCTTTGACTGGTCGAGATCAACTTCATTAGCTAGAACTTTATCTCCACGAGTTTTGGAAAGTCAAATTGACGCCAAGAAGGTACCTGATCCACTTATTTTACAGTAGTTTTTACTTGAGTAGCTATTTTTATCAAAGGATTGTCGTTATTTTTATTAAACGTTCCCGTCTAATTAAAAAAAGATTAAATCTACATGCATTTTGGTTGACTCTTCTGTATGAACGATAATCACTTAATTGTAATGTCAAAAACAATTATCACTTAATTAATCACTCTACACCTGAATTCAAACTTGTTATTATTAACAGTCGTCATAATATGATAACTCTCTTACGGACCATTAACCTGCATCACACTCCTGGTTTATCCATACTTGGGAGCAGTTTTGCTCAAAAGGTTATTTCACATAGGTGAATTTCAGTATAAAGAATTGTTCATTTCACTTTTTTGTTCTGCAATCTGTTCCACAGTTCTTTGCTTAGTGATACCATAGATTGGTAAACAACTGGAGGGCATTGAATAGCATACTAATGTCGAATACCATAGTTCATCACCATCCAAATTAAAAAGAAAAAAAAAAAGACATCTAGGAAGCATGTTTTTTCAAGCTCTGAACAGTGAGTGGCAATACATTGTACACTAAGAGCTGTGTTGATCTTTGTTTAGCATTACCTGACTGATTCATGCTGATAATGATTAATGATGTCTGAGAACCCTTGATTTAAGTCCTTTTTAAATTGCTAGATTGTTATTGGCCACATGCTTAGAAAATTTGTGCTTCCTCGTTGTCACGACTCAACCCACAGGGCCGTGCAGGCACTTACTCTAACACCTAGATAGGAGAACCCTTACCCCAAAACTGAAACATGAAATGCGGGAAGTGAACAATTATAGGCTAAACACCTTATTTAAATATGGCAGTGCTCAAACTTAGTTAAAAAACAAGTATCTTTGTCCAGAATTAAATTGAGCCCACCCAAGGAACTAGTCTAAACATTTACAAGGGCTTCTAAAGAGTACAAATTATGAAAGAAATAAGAAACAACTCCCACCATAAGGAAAGAAAAGTGGAAGCTGTCAGAGATCATTATCGTCTTCTCCGATGAAACTTCACTGAAACCTGCAACCAGACTATGCCAAGTGACATAGCAAGAGTAGTATCAGTTCATACAACACATACTAGTAGGCATCATCAGTCAATCTGAATCCCACATAATATCATGCAAATAATCAAAGAACCATGAAACTTGGAGATATAATTAGGACCCCGACCCTTCAATCATCACCTTTGCTACCAAGCAATGCTACCCTGGAACTCATACGCTCTATCCCAAGTCACGCACCTCCTTCCGCTGCCAAATCTACCATCTAAGCCCTTTCCCCCCTCATATCAGATCATTACCTAACACTTCTATTAGATAGACTTTCCAAACCACTCATTCGACCAACACCAGAATTCCTCTACTATTTCCATTCCTGAATCCAAGTCCACTACTAACTCTGTTAACCGTTCTACTACTCTCCCTCAAGCTCTCATGCCAACACCCTATCCCTTGACCAATTTAGTAAAGCACCTGCAAAACCCCTACTAAACCACCTTGATTGAAATCCCCTTTATCAGATGACAAAACCGTGCAAACTAGTGCATAAGCAAAATTCTCCGTCAACATCCTGACTTAACAACCACCCGAGACATGTACCTATACTTGATTCATCATACCTTTAGAGTAACCCGAACCACAAAGGATCCCTAAGACATCATTTATAGTGTTTAACATGCAATCCCGGTTTAAATTTTTTTGAGTTCATTCGTAAGACGTGTGTGTCTACTTATTCAACTGTATACAACTTTAAGTGCTTACTTGTGCACACTCAAAGCCGACATAGATATCAACTAAGGCCAAGTAAAGAGCACATTTATATATTATAACTTTGTTTTTATTGTTCTTTTCCTGTCAATTTTCTTAGTTATTCATTAGCTCTATAATCTCTTTTTTTGATAAATCAAATAAATTATCTCAACTTATGCCAAATCAGAATTCCATTAACATTATTTGTGAAATTCCTGGATGCATCCATTGCAATTTATGCATTCTCAAGATCATACAAAGATCTTAAAATTGGCTTTGAACTGGTATTCTATCCCAATTGTTCTGTACAGAGTTTTATTTTCTTCACCATAGTTCTATGGGCTAATAATTCGGATGCCCCTTCCTTTTCTTTTGTCATCATAGTTATTAAGTTGGAGGTTTGGATACGTCCAGAGTCTAAAGAATTATGGTTAAGTAAGCCAAGACTGAACACTTGGAGTCCAAGTTCAGTGATGTGACACATGATTCCGACGGAGAAGTGATGCTTAATTGACATGTCATCCAAAAGAGAGGTAGTTTCAAGTATCTTGGGTCTATTATCTTGGGGATTTGAGAGATCAGCGAGGATGTCACTCACCATATTGGTGTTGGATGGACGAAATAGAGGCTCACATCTGAAGTCTTTTGTGAAAAAAAAGTGCCACCTAAAGTTAAAGGCAAAATCTATAGAGTGGTGGTTAGAGTTAGACCAACTATGTTGTATCATCTATGGGGTAGAGTAGTGGCCAGTCAAGAATTCTCACATTCAGAAGATCAAAGTGTCGGAGATGAGGATGTCGCAATGGATGTGCAGGTATACTAGGTTAGATGAGATTAAAAATGAGGATATTCAAGACAAGGTGAGAGTGACTTTGTTGGAAGACAAGATGTCGGAAGCAAGGTTGAGATGGTTAGGACATGTGATGAGGAGATGTGTGGATACCCCATTGTGAAGGTGCGAGAGGTTGGGTATGAATCGATTCGTGAGAGATAGTGGGTAGACCGAACAAGTATTGTGAAAAGCGATCAGACATGATATGGTGCAGTTGCATCTTACCGAAGACATGACCTTAGATAGGAAGGTATCGAGGACACGGATTGGGGTAGAAAGTTAGTATGACGGAGTACATCCATACTGGTAGGTAGGAGTGTGTTGTCTTGTTGCCCTTATCAGTAGTTGTAGTACTACTCTTTTAGTTTCTTGTTCGTTATTTTCTTTTACTATCTATTGTTTCGTGTAGTTTGATTATAATATTATTTTATGGAAGTACTGTTCTGCTTCTTTCAGTTGTTTTTGTTACCGTATATTGTCTCTCGTATGTTTCCATTACGTTTTCTCTAAACTGTTTTTGTCTTGTGTTGAGGGTTTATTGGAAACTGCCTCTCTACCTCACATCTGAGGTAGAATTAAGGTTTGCGTATAGTCTACCCTCCTCACACCTCACTTTGTGGGACTACACTAGGTATATTGTTGTAGTTTCAAAGTTAGGTATGCGTAGAAGAGTGGTAAAACAGGCTTACGTTCGCCTCTTTGTCCAGTTATGCTTGACGATTTGTTATCCTTCCTTTCTTATTTTACATTCGGCTTGCCCTCTTCCTTCTTTGAAACAAGGGTATCGACATTAACATTGAAAGATGCGACTTTTTCAACCCTCATCATTGGAAAAAGTTGGGCAGGGTATGAATGATGAATACAAGATTTTTGAAGTTCAATTTGTAAAAAGCTTCTTTGAATGCAGGAATTGGAGAAAAGCCTGAAAACTACTTGCGAGGAGTTCATTATGTCAGTGACTAAGTTAGTTGTGGAACCATTGCTTTCTTTTGTGACAAAGGTTAGTTCTGTTTTCCATTTTCATCTTTTGTTGTTTTCTTTATTTGTAGGAGCAATCTTTCAACATGTTCAAGAGGAATTAGGTGTTGACAGAGTGGAAGGAAACATTGTGGTGTATGGAAGGAAGAATAGGGAGAGGGAAAAGGAAAAGGAGGGGTAGGAAATGAAGATAGGAGGAACTAAAAAGATGTGATCTATGGATATTAGGATAAATAATTGAAATATGAGAGGGATGATGACCTGAACAAAAGGGTCATCATCAAGATAGGCATAAGAAAATGGGGGTAAATCTACCCCCCTTTTAGAAACTGAAATGGAGGTGTCAGATAGTATTGTGAGAAGTGTGCGGTGTTAAGGGGGTAGGTAGAACGTTGGAGGAATGACAGGAAATTAGAGATTGTGGAGGATAAGAATAGTGAGTTTATGTTAGCATCTCAGTTTAGATATACTGGAAATGGGATGGATGCAGTGGGGATTTCGAGGAGGTGGTTATGGTCTGTGGGAGGGGTCTAAGGAGAATTTTTGGGAAGTAGCTCTTTACCTGTCTCCTTTATTTTATAGAAATTTGGTACTCCAACGAGATGGTTAAAAACTCAAGAGCTGCAAAATATTGGACAAACTGAAACAACAACAGCATACCCAATGAATCCCACAAGTGGGGTCTGGGAGGGTAGAGTGTACGTAGTCGAGGTAGAGAGGCTGTTTCCGATAGACCCTCGACTCAAGTGTAGCAATTTTAGGATTAAAGAAGAAGAAGACTCTGACAAAAACATAACAACTAATAGGAGAAGCAGTGCAAAGCCTACAGAAAAAAATATGAACAGCCACTGAGTAGTGCAGTAGCCGCAACATAATAAACAGATGAAGATAGATATCAAAAACTAGAACTAACAAGAATAGGGCTAGTACCACGACAAACACCACTAGCCTGAACTCTCGAAAGCAAGGCAACACTCCACTACCTACCAACCTTCTGCCCTAATACACGACCTCCACACCCTCCTATCTATGGCCATGTCCTCAGTAATCTAGAGCTGCGCTATGTCCTCTCTAATCACTCCTATCCTATGCTTTTTCAGGCTACTTCTACTTCTCCTTGTGCCTGCTACATCCAACACAACCTTTAAAATTCAAGGATGATGGAACCGCGCTCTACCCTTTCCCACTTAAATACTGGACTTAGTTCACTTGGGTTAGGGCTCAAACTTATAATGTAAGACACAAGCCCCTCAACCTTTGAGCTAACCCCTTTGAAATTTTACATAGTCATCACTATATCATGTATAACACAAAGACACACCAACATGAAATCTATAATTTAGGTAACTAGCTACAATACCACCTGTTATCTATAATTCAGGTAACTAGCTACAAATACCATCAATTATGTAATTAAATGATGCTGATTCCTTAGTAGACATCATAAAATCCTTGAAAAATGAAATAGGACATACTGTTGCTTTTTTGAGAATCTGGAAATATGGCTACTATCATAGCCTTTTTGCTGATTTTCAATATGTGACCCTCTTTTTTACAAAAACCATAAGTGCTTTGACCCGCACTGTCTCTATTGAGTCATTAACATTGGTATTTGACCTGAGACGTATTACTGATGGACATGGGAAGCAGAAATAGGACTTGTATCAAGGTCTGAATGCATCGTGAGCTTAAGTGTTAGAGTTGAAATCTAATGTTTTTATGACCTTGTAGATTTGTTCATTTCCTTATGAATCTTCTTTTTGAAGATTTTAACTGTTAGGTATTAAATGTCTTATAGGTTACGGCTGTTAAAGTTGCATTATCTAGTAGTCAAAATCAAAAACTGGAGTCTGGGATTGCAAAGCCACTCAAGGATCATGCTTTTGCTTCACCAGAAAAGATTGCCGAGCTTCTT</genome_strand>
        <mrna_strand>CCATTAGTTGGAGCAATCTGTTTCAGCAGAACTGGATTCACCATCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGAACTAAATCAAGATGTTTCCGGAACTTGGTATCCTCCACTGGAGAAAACCATATCATGTCTATCAAAACTGTACTGTTCTCTAGAAACAGCTGTTTTTACTGGATTGGCTCAG......................................................................................GAAGCTGTAGAGTTTTGCTCGTTATCCATTCAA.....................................................................................................................................AAAGCTAGCAAACTTATTGGCAAAAGATCGTCATCAATGGATGCACAACTTTTCCTAATAAAGCATCTACTCATCCTGAGGGAGCAG.............................................................................ATTGCCCCATTCGACATAGAATTTTCAGTCACGCATAAGGAACTTGATTTTTCACATTTGCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCATCTGAGGCGGATTCTAAGGGGTCAGGCATCAATCTTTGACTGGTCGAGATCAACTTCATTAGCTAGAACTTTATCTCCACGAGTTTTGGAAAGTCAAATTGACGCCAAGAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGGAGAAAAGCCTGAAAACTACTTGTGAGGAGTTCATTATGTCAGTGACTAAGTTAGTTGTGGAACCATTGCTTTCTTTTGTGACAAAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACGGCTGTTAAAGTTGCATTATCTAGTAGTCAAAATCAAAAACTGGAGTCTGGGATTGCAAAGCCACTCAAGGATCATGCTTTTGCTTCACCAGAAAAGATTGCCGAGCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E202259" ref_strand="+" ref_description="SGN-E202259 [cLEC-6-I5]">
      <seq>ctagatgctaatcttttcttctaagtgaagttgtgatgatgcagtgaaaggcattgaaagtgagttgctttgtgaggccattagaccatttcaggcactaaatcacctatggcagagctaaaggcacacctaagtttttttttctgaaatgaacacaacgtggaaggctctattgtaacaacatacccagtgtaatcacaaaaagtggggtttgggcagggatagagtatatgcagacgttacccctaccttggaggtaaagaggtagtttcaatagaccttcggttcgaggaaaaacaattcaaagcagttcggatggaaggtgctttatgcatctagcaattgtatactcgggacaagggctaatagtggttcaaagcctcttcactggacttcctgtctcaaaattgcagaggatgtggcaactggattgcttcatatccatcagaaccctggtctgactcatggaaacttgaaatcatcaaatgtactcttgggggccgattttgagtcgtgtcttacagattatggcctcatgccatttaggaatctagattctcctgaggaatcaggtgcttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0008K08.1" temp_strand="+" temp_description="C00HBa0008K08.1  CU928482.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0008K08 sequenced_by:sanger upload_account_name:uk">
        <position start="59719" stop="61143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="60019" g_stop="60371" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="353" r_length="353" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="60372" i_stop="60615" i_length="244">
            <donor d_prob="0.906" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="60616" g_stop="60843" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="581" r_length="228" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0008K08.1" gen_strand="+" ref_id="SGN-E202259" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0008K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E202259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="60019" e_stop="60371"/>
          <exon e_start="60616" e_stop="60843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGATGCTAATCTTTTCTTCTAAGTGAAGTTGTGATGATGCAGTGAAAGGCATTGAAAGTGAGTTGCTTTGTGAGGCCATTAGACCATTTCAGGCACTAAATCACCTATGGCAGAGCTAAAGGCACACCTAAGTTTTTTTTTCTGAAATGAACACAACGTGGAAGGCTCTATTGTAACAACATACCCAGTGTAATCACAAAAAGTGGGGTTTGGGCAGGGATAGAGTATATGCAGACGTTACCCCTACCTTGGAGGTAAAGAGGTAGTTTCAATAGACCTTCGGTTCGAGGAAAAACAATTCAAAGCAGTTCGGATGGAAGGTGCTTTATGCATCTAGCAATTGTATACTCGGTATGCAAGTACCACCTTAAATAGTGTGTTACCTTTCATGCGGTTTTATCTTGTTACTAGTCATTGTAAGACCACATCTGATATTTAATACATGGGGGTGCCAATCGAATATTTGAAGACAACATATTCAAAGTTAGCTGGGACTCTTATTTTCATGTATCTGAACAGCCAATATGTTTTGTTATTCAAATAATATTCCAGATGATAACTAAGTTATATTGTTACGGTTTGTCAACTTTTTCAGGGACAAGGGCTAATAGTGGTTCAAAGCCTCTTCACTGGACTTCCTGTCTCAAAATTGCAGAGGATGTGGCAACTGGATTGCTTCATATCCATCAGAACCCTGGTCTGACTCATGGAAACTTGAAATCATCAAATGTACTCTTGGGGGCCGATTTTGAGTCGTGTCTTACAGATTATGGCCTCATGCCATTTAGGAATCTAGATTCTCCTGAGGAATCAGGTGCTTCTT</genome_strand>
        <mrna_strand>CTAGATGCTAATCTTTTCTTCTAAGTGAAGTTGTGATGATGCAGTGAAAGGCATTGAAAGTGAGTTGCTTTGTGAGGCCATTAGACCATTTCAGGCACTAAATCACCTATGGCAGAGCTAAAGGCACACCTAAGTTTTTTTTTCTGAAATGAACACAACGTGGAAGGCTCTATTGTAACAACATACCCAGTGTAATCACAAAAAGTGGGGTTTGGGCAGGGATAGAGTATATGCAGACGTTACCCCTACCTTGGAGGTAAAGAGGTAGTTTCAATAGACCTTCGGTTCGAGGAAAAACAATTCAAAGCAGTTCGGATGGAAGGTGCTTTATGCATCTAGCAATTGTATACTCG....................................................................................................................................................................................................................................................GGACAAGGGCTAATAGTGGTTCAAAGCCTCTTCACTGGACTTCCTGTCTCAAAATTGCAGAGGATGTGGCAACTGGATTGCTTCATATCCATCAGAACCCTGGTCTGACTCATGGAAACTTGAAATCATCAAATGTACTCTTGGGGGCCGATTTTGAGTCGTGTCTTACAGATTATGGCCTCATGCCATTTAGGAATCTAGATTCTCCTGAGGAATCAGGTGCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E729946" ref_strand="+" ref_description="SGN-E729946 [LA22CD04]">
      <seq>gccactatgaagatctgattcaaagtttttttcttcttcttcatttgggaaagtatagtaagaatcatagagagaaaaaaaattgaggaaaaaaacgaaagagaaattatgtcaatggctgcgtttattaagctggaggattctcctatgtttcagaaacaagtgaggggtcttgaacagactacagatgaccttagagatcgatgtcaaaagctgtataaaggatgtaagaagtatatggaagttcttggagaaacacagaatggagacatcatgtttgccgaatcattagaggcatttggtggtggtctggacgaccctctcagtgtgtcccttggaggtccaatcataatgaagtttatctctgcattgcgtgagcttgctacatacaaggaacttatccgttcccaagtagaacatgtgctggtggatcgtgtgtgccagtttttgtctgatgatttgcgggatgtaaaggaatcccgtcgcaggtttgataaagctgcatccacttatgaccaggcacgtgaaaggttttcttctctgaagaagaatgcacgggatgaagttgttactgaacttgaagaagtaagccctttctctgaaaaaggttatctttgtggattgttcatcctcttatgtgtatctctctatctgcctaacttgatgaggtgtaacctaacacaaactgataaatgttgcaaaaattaccaaccaaaagtgattggtatcctgattgttatgtgttcaaataaaattatgtcctaaagaatctcaaaattttggtctgctttaggtcttttcttataggatccctctgaggaatcatttacatgcttgtttttcctttgaggaaaaaaaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0008K08.1" temp_strand="+" temp_description="C00HBa0008K08.1  CU928482.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0008K08 sequenced_by:sanger upload_account_name:uk">
        <position start="64067" stop="70628"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64367" g_stop="64529" g_length="163"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="162" r_length="162" r_score="0.951"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64530" i_stop="64663" i_length="134">
            <donor d_prob="0.997" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64664" g_stop="64740" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="163" r_stop="239" r_length="77" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64741" i_stop="65338" i_length="598">
            <donor d_prob="0.435" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65339" g_stop="65439" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="340" r_length="101" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65440" i_stop="68046" i_length="2607">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.951" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68047" g_stop="68117" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="411" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="68118" i_stop="69404" i_length="1287">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="69405" g_stop="69467" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="412" r_stop="474" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="69468" i_stop="69795" i_length="328">
            <donor d_prob="0.927" d_score="1.00"/>
            <acceptor a_prob="0.988" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="69796" g_stop="69840" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="475" r_stop="519" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="69841" i_stop="69987" i_length="147">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.912" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="69988" g_stop="70328" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="862" r_length="343" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0008K08.1" gen_strand="+" ref_id="SGN-E729946" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>861</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0008K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E729946" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64367" e_stop="64529"/>
          <exon e_start="64664" e_stop="64740"/>
          <exon e_start="65339" e_stop="65439"/>
          <exon e_start="68047" e_stop="68117"/>
          <exon e_start="69405" e_stop="69467"/>
          <exon e_start="69796" e_stop="69840"/>
          <exon e_start="69988" e_stop="70328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCACTATGAAGATCTGATTCAAAGTTTTTTTCTTCTTCTTCATTTGAGAAAGTATAGTAAGAATCTTAGAGATAAAAAGAAAATTGAGGAAAAAAACGAAAGAGAAA-TATGTCAATGGCTGCTTTTATTAAGCTGGAGGATTCTCCTATGTTTCAGAAACAAGTAACTTTTCTTTTGATCCCCTTTTCATTTTTATGTTTTTTTGAATCTTTTTGAAAAATTGCTTTCTGGGTTTTGATGTTTGAGGAATTTTGTATCAATTTTTGTTTTTGAAATTAAAATTTGTTGCTTTGTAGGTGAGGGGTCTTGAACAGACTACAGATGACCTTAGAGATCGATGTCAAAAGCTGTATAAAGGATGTAAGAAGTATATGTGAGTACTCAATTTTATCATTTTATTTGGTGTAATAGCTTATCTTTACTGTAATTACCTCTAATGACTTAAAAAGGTGGAATCTTTGGGGCATTTAACTACATTTCAATCAAAATTAATGTAGTTTGCTATATGAATTTTGCTCTTTTTTTTTGTAACTGTAATGTCGGACCAATTTGCGCGCACCTTGACTAATTCAAGATAGCCCTGTCACCTCCCACCAAGAACGGTCGGGAAGAAACACCTAGTATTTTTTTTTGTTTGGTCTTTGTTGGGGTTTGAAGCTGACCTCATGGATCTTAACTCACTTCATTGACTACGAGGCCACACCCTTGGGTACATTCTGTTCTCTATAGGTCCATTTTGTTTTAATACTAAAGAATTTGTCTTTCATTCTCTAAAAGCTGTAAGTTTGTAGTCAATGATCATTCATCTTTCTCTCTCACTGACACGTGATACGTTCTTCCCCTTTCTATGCGTTGGCAATTTTGTCGTTCTGCAGAATATATCATTCTCTTGTTTTGTTTGAAAGTTCTGGTTTCTTCATCTGCATTTATTTGTTTAGGTAGATGCTATTCTTGATGCTTAGTTATTTCAGGGAAGTTCTTGGAGAAACACAGAATGGAGACATCATGTTTGCCGAATCATTAGAGGCATTTGGTGGTGGTCTGGACGACCCTCTCAGTGTGTCCCTTGGAGGTTAGTTGGCTTTACTCATTCAAACTATTACAAGGTTCTCATTTTTGCTAATTTTATTTGCAATTGTCAATAGGTGCATCATGCCTGCTGTTTATTTTGTTGAAGGTGTTTTTCTTTTATTCTCTTCAATGTTAATGCTTGATTTTGGAATTCTCATATAAATGATCACCTCGAAGATCACACTAAGTTTGGATTTTTTTAATTTTTTCTTTTTGAGGAAGGTAACAATTGTATTTCTATCAAACAAAACTTAGACACCCCAAAAGTGGCATTAAGTTTGGAATTCTCATATAAATGTTATTCTTCTCTAAGGTGGTATGTTCCCTAAAGGAATTCACAGCTTTCTTAATTGCTTAATGGATAACATCTCGGTCTTCTAGGGAGATGCTGAGTCAATATTGAGGTCAGGCTAGATAGTTAAAGCCTGAAAGTTGTCAGCTAGTGCTCTTATATGGATGTTGTTGAGAAGGTAACGTTGAAAAGCAGCCTGATAGTTGTCAGCTAGTGCTCTTATATGGATGTTTTTGAGAAGGCAACATTGTAAAACCTTTCACGTTGTTAAAAATCTCCATAAGATGTCTTTGAGAAGCACATATTTGTTTCTCTTTTTCCCTCTCACTGGTTTATTTTTTGTTTTCCCTCTTTATGGGTGTGGTATGGGATGGAAGTGTTCAAGACGTGCCAAGTCATATAGATGATTGGATGAGGTTTGCATGACTTGTATTTCTGTAGACTGCTTGTTGGTATGTCATGGAGTGGTAAAAACATCTTTTCCAATCATATTATGCAAGGTCAAACTATTTGACATGTTAGTTAAGGGAAATGAGCAATCAGGGGTTAAGGTCTTCTCTCACCTTAATTACAAGCTAACCACACAGCTTCCCAACTCATTATCGTGCTGAACTCCGTTAAATGCCTCCTATCAACATAAAATATATCCATTTGATTCATCTCTCCAAATTGAGTCTTGGACAAAAGTCAAAGTCATCCATTGTGCGATCAAATTGATGGACCAGATATATTTTCAGATTACCATAACTTTCTAAATCCAAATATATTATTAGTTCTCCATCGAAGTCCTTGAAGTGGATCAAATGCTCAAGTTACTAATTTGAGGTTTTAGGGCTCAATCCATGTATTTCTAAGTTCAAATCCTTCAAATAAATCCATTTTCTGTCGTAATATCATCATCTAAACAAAAATGCTTCATTTAAAATCTTAGATATTGATCTCCATATCTAATATAGTAGTCAAAGAGAACACATAGGTACGAAAGAGCTAATAGTGAACTATTGGTGATTCAGGATTCTACATTAGTAAGAAAATCTCTAGGTTCTCTTCTTTCATATAGTGTAAAGAGCCAAATCAATTGCTTTTGTGGAATCCTTTCTCATCATTCATTGACATTACTACATGGGTTTTGCTTCACTTTATTATACTCATTCCTCACTTTAAATCTCCAAATCTGGCAACCCACTTCAGAGTGTAGGATCAGTTTGGTTATTTCTTAAAATTCACTATATACCACATTTTAAAGACCCAATAAGCTGTCGCCTGTACCACCTTCTTCGGGGCCTGGATTTATAAATGTACTTCATATAAAATATCACCAAATGCATATTGTCATCAGGAAAGTGCACCAATGCTGCATTCTAGACACCAAACCAAATCTTCTTAATAGGCTATTCAAGACCCCAGTCATTCATCACATTAAACTTCTTTTGTTTGCTCAATTCGTCATCAAAGTCCATATAGTTTGTTGCCTAAAGTCCAAACTTAAACCATTGTGACATGTCATTATAGTAATTCCTTAATATATCACAATTCCAAATCTTCAATTGGTATATTCCATACACATGTTACATGTGCATACATATAACTTGTCAAATTAAGAGCGACTACGCTTAAGAAATAATTTATAAGCCAATTCTAAACTTCTTGGGCTAATTCATGGGGCTACATAACATCAAAGTACATCAAGGGTTAACGAAGAAAATATGTGGTCTAGCCCGAACCCACTATGCAGTGATAGTTCATTCTAATAAATCCCCCATTGCTTGTTTGTCTTACTAAGTTTCGCTTTAATGTGGGTCATTTGGAAAGAGCAAAATAGTAGATCTTTTGAAGGGGTGGAGAGAACTTTGCTTAATTGAGGAGTAGACTCCAATCCCTTATTTTCCTTTGGTGCACCCATGTAGTTCCTGTTTGTATAGAGGATGGTGTGGCTTTTGGTGAGGACCATATTTTGTAGGTTTCTCCTTTTCTGGTATACCTCTTGTATATGGTCATGTTGACCTTGTTATTATCAATGAAAACTTCAACTTGATCAATAAAATAATTCCATGAAGCCTTGTTAAAAAATATCATAAATCGATGAAGTTGTAGTTCTATTTGCAAAATATGCATGCTGATGTGAAATTTCAAGCTGTAGTTCTGGTGTCACTTGATGGAGTTGATATGGCTGTTATTTACTCCATTGATATTTCCAAAGTATGGTTGCCCAATGTAATATGCTAATGTTGTCTCCGTGCTTAGATTGTGAAGCTTATAATTACTTCTATCAAACAATAAGATTATGTATCACTCTTAAATGCATCCATATGTCAGGTCCAATCATAATGAAGTTTATCTCTGCATTGCGTGAGCTTGCTACATACAAGGAACTTATCCGTTCCCAAGTAAGTGGATGTATTCTAAATCACTATAGTGAGCCTTTTGTAAGAAAATCTGTACTCTTCTATAAAAGCATATTGCTGTGTATGGCACACTGTTCTGTTTTTTTTACTTCAATACCTCCATTATAGTTATTTTCGGTGCACGAAACCTGTGTCAACAACTCATGGAGTGAGATCATGAATGTAGATAAGTCATCGCTGGGATGAGTTACATACTGAAAACAATTCAAGGTGGGTCATAGTAGATAAGATTCTGGTAGGATGCATGGCTGAGACGTAGAGTCGTATACCCTTGAGGAATTACCAGGTCTATACAACTTTGTCTCATATCCTGAAGCAACCATAGCTCAGTGCAAATCTACTAATAGCTGGAATATTAGATTCATGAGGAATTGTTAGGGACTGGGGGAATAACTGGCCATTATCATAGAACATGGTGAAAAAGAAGTTGTTCCTCAAAAAAGACATGGTGAAAAAAGAAGTTACAAAGGTCCCTGGAAAGCTACAGTTACCAGTTCAAATAAAAAGGCCCCTGGAAAGCTACATGGAAAAGCGTGGCACCAACAAAGGTGAAATATTTTTCATGGTTTGTAGTGAGAAAAGCATGTCTAACTCATGAAGCACTTAAGAAGAGGAAATCCAAATAGCATCTAGATGCATCTAAGCATGAAGGCAACTGAAACTAACACTCACATATTCCTTCACTGAAAGGTAACATCCCAAATTTGGGCACTCTTCATTTCTGTGACTAGGGAGAATTGGACAATGCTAGAACACACTGCAAACTTACTAAGCCGCTGGATCAGAAGGGGAGTGAGCAAAAGACAACAAAGGTAGTGGAAAACTGTACCAGCATGCATATGGTGGAATACCATAGTTCTGTAAATCGTTCTCTTGAGCTACATGGGCATAGCAACTTTGCGCTAAGTGGAACCACAATCATTATCATCAAACACCAATCTTCTGTTGTTTTAGTTACACCAATCTTATACACGATTAAGTTCTTGTATAATCACAAACTTGTTAACTAACCAAATAGATACTTCTGAGATGTTCATTAATTTTGTTTCACTTAAATGCCGTCGAAGTGGAGACACCTAAGTAGAAAACTTGGCCTTGCAATTTTTGAACAAGCCATTAGGAGCTTTCGCTGGGATCGCAAAACGAAATTGTTCGGTACCTTCTGTAGTTGGATGTGCTAAGCTTGTCTGATTATGTCGCTCCATTTTATATCAATGTTTATTCTGATATAGTTCTTTGAAAAAGTAAGGCAAGTTATTCCTTTTGCAGGTAGAACATGTGCTGGTGGATCGTGTGTGCCAGTTTTTGTCTGATGATTTGCGGGATGTAAAGGTGATCAAATTTGGCATTATTTCAATATTGTTGTGGAAATCTAGATTAAGCTCTCTCTATGTTTGCGTTAATAGAATTAGGTAGCTGTTTTATTTTTTTTGATAAGGCAAGCAATTTTATAAACAATGGAATACCCCAATATACAAGTTGAATACCAAATTGTAGAGAACCTACAACAAAACATGGCTACAGAACACCAATCCACTGTACTTGGTGCCAGCCTAACTTGGCTGTAATTCTGTCAAATGGGTGCCTTTTAGTGGATTTTGACATACAAGGGTTGGTACTTTAATGTCATGTGTCTGATGACTCGTCGCTAATTTTGCAGGAATCCCGTCGCAGGTTTGATAAAGCTGCATCCACTTATGACCAGGTAATGGAGATGTTTCAATAGAAACAAGTTTAAAGCTGCTTTTTTAAATGCTAAGCAGACTTTATGTGCAAAATTCTGTTCATTTGGAAGATAACACTTCCAGTTCTTTTTGTTATTAATTTCACTCCTGAGTTGCTAAACTGCCAGGCACGTGAAAGGTTTTCTTCTCTGAAGAAGAATGCACGGGATGAAGTTGTTACTGAACTTGAAGAAGTAAGCCCTTTCTCTGAAAAAGGTTATCTTTGTGGATTGTTCATCCTCTTATGTGTATCTCTCTATCTGCCTAACTTGATGAGGTGTAACCTAACACAAACTGATAAATGTTGCAAAAATTACCAACCAAAAGTGATTGGTATCCTGATTGTTATGTGTTCAAATAAAATTATGTCCTAAAGAATCTCAAAATTTTGGTCTGCTTTAGGTCTTTTCTTATAGGATCCCTCTGAGGAATCATTTACATGCTTG-TTTTCC-TTGAGGAAAAAAAATGA</genome_strand>
        <mrna_strand>GCCACTATGAAGATCTGATTCAAAGTTTTTTTCTTCTTCTTCATTTGGGAAAGTATAGTAAGAATCATAGAGAGAAAAA-AA-ATTGAGGAAAAAAACGAAAGAGAAATTATGTCAATGGCTGCGTTTATTAAGCTGGAGGATTCTCCTATGTTTCAGAAACAA......................................................................................................................................GTGAGGGGTCTTGAACAGACTACAGATGACCTTAGAGATCGATGTCAAAAGCTGTATAAAGGATGTAAGAAGTATAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAGTTCTTGGAGAAACACAGAATGGAGACATCATGTTTGCCGAATCATTAGAGGCATTTGGTGGTGGTCTGGACGACCCTCTCAGTGTGTCCCTTGGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAATCATAATGAAGTTTATCTCTGCATTGCGTGAGCTTGCTACATACAAGGAACTTATCCGTTCCCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAACATGTGCTGGTGGATCGTGTGTGCCAGTTTTTGTCTGATGATTTGCGGGATGTAAAG........................................................................................................................................................................................................................................................................................................................................GAATCCCGTCGCAGGTTTGATAAAGCTGCATCCACTTATGACCAG...................................................................................................................................................GCACGTGAAAGGTTTTCTTCTCTGAAGAAGAATGCACGGGATGAAGTTGTTACTGAACTTGAAGAAGTAAGCCCTTTCTCTGAAAAAGGTTATCTTTGTGGATTGTTCATCCTCTTATGTGTATCTCTCTATCTGCCTAACTTGATGAGGTGTAACCTAACACAAACTGATAAATGTTGCAAAAATTACCAACCAAAAGTGATTGGTATCCTGATTGTTATGTGTTCAAATAAAATTATGTCCTAAAGAATCTCAAAATTTTGGTCTGCTTTAGGTCTTTTCTTATAGGATCCCTCTGAGGAATCATTTACATGCTTGTTTTTCCTTTGAGGAAAAAAAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E341998" ref_strand="+" ref_description="SGN-E341998 [cTOF-10-E22]">
      <seq>taaaaaaaaaaaagaagaaactcagcctcatgcttttggtaaacacatcttcccctcttcttttgcgtgtgtgtgttttctggttgttgtaaaatgaccttcacaaaagaaagaatgttgatacatcttcgggtgaagctcgccgaggccaccttattggtagaggctttttcccgaagcatatctcagagcttttacataaatagacattgctcccaagtccagggaacaaattgtgatgaattaatgttgaaggtttcacttatatctcgttctgttttgatgctaacaatgtcctattcaggtttttatgaagtatgtccagccttctgtatccctctgttttatattagtgcttatctgtcaaggaaaacatttgaagtaattaggagtcaaaactgggaattggagttttacagctttttctgtgacaggagcttcataactcaaagtccacttttgagagaagccgtttcaatcttgatttcaggtaaatgctatcacaaatgttgatgccaaaaagaagtacgagttcttagaatcctttagtgctattatggatgcacatctgagatacttcaagctgggtcatgacttattgagccagatggagccgttcatccatcangttttgacatatgcccagcagtcgaaagaacaggccagcatagaacaagataaacttgcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0008K08.1" temp_strand="+" temp_description="C00HBa0008K08.1  CU928482.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0008K08 sequenced_by:sanger upload_account_name:uk">
        <position start="70285" stop="75321"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="70585" g_stop="71066" g_length="482"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="482" r_length="482" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="71067" i_stop="71150" i_length="84">
            <donor d_prob="0.625" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="71151" g_stop="71254" g_length="104"/>
          <reference_exon_boundary r_type="cDNA" r_start="483" r_stop="586" r_length="104" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="71255" i_stop="71335" i_length="81">
            <donor d_prob="0.985" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="71336" g_stop="71377" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="587" r_stop="628" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="71378" i_stop="74960" i_length="3583">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74961" g_stop="75021" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="629" r_stop="689" r_length="61" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0008K08.1" gen_strand="+" ref_id="SGN-E341998" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0008K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341998" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="70585" e_stop="71066"/>
          <exon e_start="71151" e_stop="71254"/>
          <exon e_start="71336" e_stop="71377"/>
          <exon e_start="74961" e_stop="75021"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAAAAAAAAAAGAAGAAACTCAGCCTCATGCTTTTGGTAAACACATCTTCCCCTCTTCTTTTGCGTGTGTGTGTTTTCTGGTTGTTGTAAAATGACCTTCACAAAAGAAAGAATGTTGATACATCTTCGGGTGAAGCTCGCCGAGGCCACCTTATTGGTAGAGGCTTTTTCCCGAAGCATATCTCAGAGCTTTTACATAAATAGACATTGCTCCCAAGTCCAGGGAACAAATTGTGATGAATTAATGTTGAAGGTTTCACTTATATCTCGTTCTGTTTTGATGCTAACAATGTCCTATTCAGGTTTTTATGAAGTATGTCCAGCCTTCTGTATCCCTCTGTTTTATATTAGTGCTTATCTGTCAAGGAAAACATTTGAAGTAATTAGGAGTCAAAACTGGGAATTGGAGTTTTACAGCTTTTTCTGTGACAGGAGCTTCATAACTCAAAGTCCACTTTTGAGAGAAGCCGTTTCAATCTTGTATGTATAATGGATACAAGAATCTTTTCTACACAGCAAGCATTCTTGCCTCAAGATTCTAATTTATAGCCTTGTCGCCTCAAGGATTTCAGGTAAATGCTATCACAAATGTTGATGCCAAAAAGAAGTACGAGTTCTTAGAATCCTTTAGTGCTATTATGGATGCACATCTGAGATACTTCAAGCTGGTATGATGTTCTTTATCTTCTCTTTGATGCAGTTATGTTTCTGTCATTAAACTAACAAATTTTAATACTTGTTGAATGTAGGGTCATGACTTATTGAGCCAGATGGAGCCGTTCATCCATCAGGTACCCATCATATGAGTTATTTTTTCCTTATATCGTGATTGACTAGCTACTTACTGGAACGAGGTAGTACCATCATGCTGCCATTGATTCATTTTGGGTTTGACAGTATTGAAATTTAGTTGAAGATAGATTTGTACAAAATCAGCTAGTTGAAAATACAGTTAGGCTATGCTGATTAGTTAGTTAACTGAGTTGAATGGATTAAAGTGTAGTTTAATTAGTCCAGCTGGCATGATTAGTTGTTAGAAAGTAGTTAGTTGGTTAATGCAAAGATGCTTCTTGTATATGTATAAATAGAGCTCCGTTGAGATGAATCAATCACTTAGACAATTCCACAAAAGTATCTTCATACTCTCCAATGGCTTCATGAACAAACACACTCTTTGTATGGAATATGGATTATGACAGACCGACTACTGGTCCTCTCATGCTGCGATTTATTCTTGTTTACTATTTACTTGTTTCTTGAGGATTCTTCATTGTTCCTCTGGTTCCTGGTTGGAATGTGTGTAAATTACATTTAAGGAGATTGATGTTTGCATAAAGTAGCTCACTCATAGCTCTTAGCGGTTCTTGGTTTTGTGCTTGCTTACTATTAGTATACTCTGCCTCATTATCATGAAATTAATTCTTGCCTTAACTAGCCTTAACGTATCAATGAAAGTGAAATTAATATCATGGAATGTGAGGGGGATACATGGGGGTGGTTAGAGGAGCATTGTCAGGAAATTACTATATCTTGGGATGTCAATATGTGTATTCTAGTTGAAACAAAACTAGAAGGGCCACTTAATTTCAAAAAAAAAAACTAGAATGGCCAATTGATGGAGTAATACAGGCTACAGAGTATATGGGATAACAGATGGATGGGAGAATTTCTTAAAGAGGCAATAGGAGCAGTGGGGGAATTGTAGTCCTCTGGGATGAAAGCGTGTGGACAGGAGAAATGGTGGAGGTTGGTGATCAAAGTATTACTTGGAAGTTCACAGGGGTAAATGAGGATTTCAGGTGGCACATTATGCAGTCTATGCAGATTGTAATAAAGAATCAGGAAGACACTGTGGGAGAAATTGTTAGCCATTAAAAGCAGGTATGCTGGGCCATGGATAGTGTAGATGACTTTAATGTCATCAGATTTCCCTCAGAAAGACCAAACTGTATGAGACTTAGTGGTGCAATTGGAGCTGATTGATCCTCCTTTATTTGGGGAATCAGATACTTGTAGGAGGGATTGATAGGTTCCTACATTGCTTGGGTTGTGGGGGGGGGGGGGGGGGGGCTCTCAGATCAAGAAGATGTGCTATAAAGTTAAACTTCAGATCACAATCCTATTGCTTTGACATGTGGGGATCAGGAATGGAAGAAATCCGACTTCAAATTTGAATCGTGGTGGCTGGAAGTGGAGGGTTCAAAGACAGAGTAAAGTGGTGGAATTCTTTCAGTGTTGAAGGAAGAGCAGACTTCATACTAGCTAAAGGCTAAACTGAAAGAGTGGAGCAGGGATAACAAAGGTAACCAGAAACAGAGAAACGAAGGCATTTTGAACCATATAGCAATCTGGGAAAGCACATAGGAACACAGAGTTCTCACTGATGCTGAAGTTCTTCAAAAGATAAATTTGATGAGGTAGCCAAGAATGAGGAGATAGCTTGGAAAGAAAGGTCCAGGATACCATGGTTGAAACATGGTGACAAAAGTCAAAAACACAAAGTTCTTCCATAGAATTGCAACTTCACACAGGAGGTTCAACTCTATGGAACAACTTCATGTGGAAAGAGTCACGGTGAAGTATCCTGTCTTGATCAAAGAGGCATCTCAGAATTTTTACAGGAACTTATACAAAGAGTCTGAACAATGGAGGCCTGATCTTAATATACTGGATGTTACTGTGATTTCTGAGGAACAACAGACCTGGCTACAAAGACCTTTTGAAGAGGATGAAATATAGGAAAGTATTAGAATGTGTGCTATGGAGAAGCCACCTGGTCCAGATGGCTTTCCAATGATCTTCCTTCAGACTTTTTGGAGGTTCTGAAGGGAGACATTTCCACTCAAATCAGAACTTTGGAAAGAGTACCAATGCAACTATATACCTCTAATCCCTAAAAAGGTTGGAGCCTCAGAGCTGAAGGATTATAGGCCAATCAGTCTTACAGGAGGTGTGTACAGGATCATTGCTAAGCTACTGGCAGGAAGGCTTAAGAAGGTGGTGAGCAAATTGGTTGATAATAATCAGATGGCCTTCATAAGCAAGAGTCAAATAATGGATGCTGCTTTGATAGCCAGTGAATGTATCTATTGAAGATGGCACTGCAGATCTACTATGCAAGTTGGACATCCAGAAATCTTAACTGGTCCTTCTTACTAAACATTTTGAAACAAATGAACTTTGGCAGTAAGTTGAAATGGATAGAATTGTGCATCAAAATAGTGAGATTCTCAGTCCTATTAAATGGAGAACCAGTTGGTTATTTTCCTTCAGAAAGAGGACTGAGACAAGGGAACCTTCTAGCAATGGAAGGTTTTGATAGTATGATGAGAATAGCTACACAACATAGATGGATCAGAGGCTTTCATATAGGAGACAAAACTAGGGGATGGGGTGGAAAAGATATTAGTACCTATTATATGCAGATGATACTTTATCATGTGTGAACCAGAGGCAAAACAAATGAACTATATCAGATTGATCTTGATTCTTTTTGAAGCAGTATCAGGCCTAAAGGTCAACTGGGGAGAAAAACAGACTGATTCCTGTCAAAGATGTACATCAGATTCTAAGACTGGCAAATATCTTGGGGTGCAAAATTGATGGATCACCAACCACATACTTGGGTATGCGCTCAGGGAGCAAACAGAAAACACTGGAGATATGGGATGGGATCCCGGAGAAAGCAGAAAAGAAGTTGGCTAGGTGGAAAGCACGATATCTCACTCGGGGATAGAGTGATTCTGATTAATACTGTCTTGGATCCCCCTCCCCCTCTACTTATGTTATGTCTTTTTTTGTCAATTCCTTCAAAAGTTGTCAAAAAGCTGGACAGACTTACAAGAAACATCCTGTGGCAAGGGGGCAAAGAAGGCAAGGGTAATTACCTGGTGAAATGGAATACTGTAATGTTGAGCAAAGGAAAAAGAGCTCTGAAAGGCTGACAATGGACCGAGTTTGGGACCACTGGACCGGGAAATACCAGTCCGGTGGCCCGTAGCCGGTCCGTTGCCAGCCTTAGTCACTGTTAGAATATGGATAGATTTATACAATCCTATTAAAATAGGAATAGGTTTATACAATCCTATTAGAATAGGAGTATGTTTATACAATCCTATTAGAATAGGAATATGTTTATACAATCCTATTAAAATAGGAATACTAAATAGTACCCTGCTTGGTAAAGGATTGTATTCTAGGGTCTATAAATTTGGTCTCAATGTAATAATGTAGGCACAACAACAATTCAATAATACTAAATGGTTGATTTTTGCAGCTGCTTGATTAATGACATTGATTAGAAATTTGAGTTTTTGTTTGATATCTTTCTTCTTTTTGAATATTTTTGGTGCTAATGTTGTCTCCATAAATCAGGTTTTGACATATGCCCAGCAGTCGAAAGAACAGGCCAGCATAGAACAAGATAAACTTGCCA</genome_strand>
        <mrna_strand>TAAAAAAAAAAAAGAAGAAACTCAGCCTCATGCTTTTGGTAAACACATCTTCCCCTCTTCTTTTGCGTGTGTGTGTTTTCTGGTTGTTGTAAAATGACCTTCACAAAAGAAAGAATGTTGATACATCTTCGGGTGAAGCTCGCCGAGGCCACCTTATTGGTAGAGGCTTTTTCCCGAAGCATATCTCAGAGCTTTTACATAAATAGACATTGCTCCCAAGTCCAGGGAACAAATTGTGATGAATTAATGTTGAAGGTTTCACTTATATCTCGTTCTGTTTTGATGCTAACAATGTCCTATTCAGGTTTTTATGAAGTATGTCCAGCCTTCTGTATCCCTCTGTTTTATATTAGTGCTTATCTGTCAAGGAAAACATTTGAAGTAATTAGGAGTCAAAACTGGGAATTGGAGTTTTACAGCTTTTTCTGTGACAGGAGCTTCATAACTCAAAGTCCACTTTTGAGAGAAGCCGTTTCAATCTT....................................................................................GATTTCAGGTAAATGCTATCACAAATGTTGATGCCAAAAAGAAGTACGAGTTCTTAGAATCCTTTAGTGCTATTATGGATGCACATCTGAGATACTTCAAGCTG.................................................................................GGTCATGACTTATTGAGCCAGATGGAGCCGTTCATCCATCAN...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGACATATGCCCAGCAGTCGAAAGAACAGGCCAGCATAGAACAAGATAAACTTGCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E243215" ref_strand="+" ref_description="SGN-E243215 [cLEE-2-E2]">
      <seq>ttattgtagatgaccaattttttcttcgaatacgaaattaaattacaatacacacaaaaaaaatatttgaattttttttatttaaactaaggaatgaaagaaaaaaacaaaataagaataagaaactcaaattattataataaaagaagtcaaaaaataatttttgtatgaaaaaattaaaatataccttgaactttgatagaagaatcatatatatccctaaatattttttttaaaaaaaaattagaagtaacaaatataaatttaaaactaattttttaactttcgttaaatgaagggtatatgtgagccattttctaacggcaggggtatatgtgagccgtttgtataacgataagggcatatatgaaccacttttattacgagggatatatcagctctaaatgacaaagttgagaggtatatcagacccttttccctattttttaaaatttcatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0008K08-EH6vB/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0008K08.1" temp_strand="+" temp_description="C00HBa0008K08.1  CU928482.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0008K08 sequenced_by:sanger upload_account_name:uk">
        <position start="88750" stop="89793"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89050" g_stop="89470" g_length="421"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="420" r_length="420" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0008K08.1" gen_strand="+" ref_id="SGN-E243215" ref_strand="+">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>421</cumulative_length_of_scored_exons>
        <coverage percentage="0.915" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0008K08.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243215" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89050" e_stop="89470"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATTGTAGATGATCAATTTTTTTCTTCGAATTCGAAATTAAATTACAATACACACACAGAAAAATAGTTTAATTTTTTATTCTTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATAT-CCTAAATA--ATTTTTAAAAAAAAATTAGAAGTAATAAATATAAATTTAAAATTAATTTTTTAAAATCCGTTAAATGAAGGGTATATGTGAGTCATTTTGTAACGGCAGGGGTATATGTGAGTCGTTTGTATAACGGTAAGGGCATATATGAGCCACTTTTATAACGAGGGGCATATCAGCTCCAAATGACAAAGTTGAGGG</genome_strand>
        <mrna_strand>TTATTGTAGATGACCAA-TTTTTTCTTCGAATACGAAATTAAATTACAATACACACA-AAAAAAATATTTGAATTTTTT-TTATTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAACTCAAATTATTATAATAAAAGAAGTCAAAAAATAATTTTTGTATG-AAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCCTAAATATTTTTTTTAAAAAAAAATTAGAAGTAACAAATATAAATTTAAAACTAATTTTTTAACTTTCGTTAAATGAAGGGTATATGTGAGCCATTTTCTAACGGCAGGGGTATATGTGAGCCGTTTGTATAACGATAAGGGCATATATGAACCACTTTTATTACGAGGGATATATCAGCTCTAAATGACAAAGTTGAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>18</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="3513" PGL_stop="4075"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="3513" e_stop="4075"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.993"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.993">
            <gDNA_exon_boundary e_start="3513" e_stop="4075" e_length="563"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="3513" stop="4075"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E336128" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGGCGGTTCTGGTTGAAGATATTGTACATACTTCAAAGGCATGGTGCTAAAGTGTTATTGGAGGTAGGACTATGGAAGCGCGGAATCATTGAACACACAAAATCTGCTTCATGCAAACAGTGCTTATTCAATCCATAAAAATATGCCTCTCCCATGGGACAAGAAATTGATCAGGTCTGGTTTATCATCACTCTAATGATTCCTTCAGTGGCACAGCTCTGGATTACATCTATAATGATGGTTATAGAACCTAGCTGCTCTTGACAACCATTCCGTGGTAGTATAGAATGCCAACGAGCTCCGCCTGAACGTGGCGCATAGGTGATTCTTTGATTTCATTCTGCCATAGGAAGTTCATCATTTGATGGCAGATGTAATATAGCTTTCCTTATTTAACTTGAGCTAGCTTGCAGTGGGGAGGGAGGTAGAACTAGCCTTTTTGTTAAAAAGTAAAAATTATTTTGCTCCCTTCTACTCCATGAGTTCTCAAACTGGATTTTGGTTCTGTGGATGTTTCTCTTATATTTATAATATATAATATGATATACATATTAAAGATGATA</gDNA_template>
            <first_frame> R  R  F  W  L  K  I  L  Y  I  L  Q  R  H  G  A  K  V  L  L  E  V  G  L  W  K  R  G  I  I  E  H  T  K  S  A  S  C  K  Q  C  L  F  N  P  *  K  Y  A  S  P  M  G  Q  E  I  D  Q  V  W  F  I  I  T  L  M  I  P  S  V  A  Q  L  W  I  T  S  I  M  M  V  I  E  P  S  C  S  *  Q  P  F  R  G  S  I  E  C  Q  R  A  P  P  E  R  G  A  *  V  I  L  *  F  H  S  A  I  G  S  S  S  F  D  G  R  C  N  I  A  F  L  I  *  L  E  L  A  C  S  G  E  G  G  R  T  S  L  F  V  K  K  *  K  L  F  C  S  L  L  L  H  E  F  S  N  W  I  L  V  L  W  M  F  L  L  Y  L  *  Y  I  I  *  Y  T  Y  *  R  *   </first_frame>
            <second_frame>  G  G  S  G  *  R  Y  C  T  Y  F  K  G  M  V  L  K  C  Y  W  R  *  D  Y  G  S  A  E  S  L  N  T  Q  N  L  L  H  A  N  S  A  Y  S  I  H  K  N  M  P  L  P  W  D  K  K  L  I  R  S  G  L  S  S  L  *  *  F  L  Q  W  H  S  S  G  L  H  L  *  *  W  L  *  N  L  A  A  L  D  N  H  S  V  V  V  *  N  A  N  E  L  R  L  N  V  A  H  R  *  F  F  D  F  I  L  P  *  E  V  H  H  L  M  A  D  V  I  *  L  S  L  F  N  L  S  *  L  A  V  G  R  E  V  E  L  A  F  L  L  K  S  K  N  Y  F  A  P  F  Y  S  M  S  S  Q  T  G  F  W  F  C  G  C  F  S  Y  I  Y  N  I  *  Y  D  I  H  I  K  D  D  </second_frame>
            <third_frame>   A  V  L  V  E  D  I  V  H  T  S  K  A  W  C  *  S  V  I  G  G  R  T  M  E  A  R  N  H  *  T  H  K  I  C  F  M  Q  T  V  L  I  Q  S  I  K  I  C  L  S  H  G  T  R  N  *  S  G  L  V  Y  H  H  S  N  D  S  F  S  G  T  A  L  D  Y  I  Y  N  D  G  Y  R  T  *  L  L  L  T  T  I  P  W  *  Y  R  M  P  T  S  S  A  *  T  W  R  I  G  D  S  L  I  S  F  C  H  R  K  F  I  I  *  W  Q  M  *  Y  S  F  P  Y  L  T  *  A  S  L  Q  W  G  G  R  *  N  *  P  F  C  *  K  V  K  I  I  L  L  P  S  T  P  *  V  L  K  L  D  F  G  S  V  D  V  S  L  I  F  I  I  Y  N  M  I  Y  I  L  K  M  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0008K08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="13149" PGL_stop="9209"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13149" e_stop="12992"/>
            <exon e_start="11430" e_stop="11412"/>
            <exon e_start="10708" e_stop="10479"/>
            <exon e_start="9258" e_stop="9209"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.774" acc_prob="0.000" e_score="0.943"/>
          <exon-intron don_prob="0.997" acc_prob="0.853" e_score="0.895"/>
          <exon-intron don_prob="0.964" acc_prob="0.994" e_score="0.978"/>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="13149" e_stop="12992" e_length="158"/>
          </exon>
          <intron i_serial="1" don_prob="0.774" acc_prob="0.000">
            <gDNA_intron_boundary i_start="12991" i_stop="11431" i_length="1561"/>
          </intron>
          <exon e_serial="2" e_score="0.895">
            <gDNA_exon_boundary e_start="11430" e_stop="11412" e_length="19"/>
          </exon>
          <intron i_serial="2" don_prob="0.997" acc_prob="0.853">
            <gDNA_intron_boundary i_start="11411" i_stop="10709" i_length="703"/>
          </intron>
          <exon e_serial="3" e_score="0.978">
            <gDNA_exon_boundary e_start="10708" e_stop="10479" e_length="230"/>
          </exon>
          <intron i_serial="3" don_prob="0.964" acc_prob="0.994">
            <gDNA_intron_boundary i_start="10478" i_stop="9259" i_length="1220"/>
          </intron>
          <exon e_serial="4" e_score="0.980">
            <gDNA_exon_boundary e_start="9258" e_stop="9209" e_length="50"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13149" stop="12992"/>
              <exon start="11430" stop="11412"/>
              <exon start="10708" stop="10479"/>
              <exon start="9258" stop="9209"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E268612" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCAGTCGGTGTTCGGAACTTTGACATTGATGGTGAACTTTGGGTCAAATTACGTTTAATACAAACAGAGCCTTGGATTGGAGCTGTTTCTTGGGCTTTTGTCTCCCTTCCCAAGATAAAACTTGACTTGTCACCGTTCCGTTTGTTCAACCTAATGG : CAATTCCTGTTCTATCAAT : GTTTTTGAAGAAGCTTCTTACTGAGGATTTACCTCGTCTCTTTGTCCGTCCAAAAAAAATTGTGTTGGATTTTCAGAAAGGGAAAACAGTCGGGCCTATTCCAAGTGATCGTAAGTCTGGTCAGAGCGAACAACCTAAGGCTGGGGAAATGCAAGAAGGAAATAAGGACTATGCTGGAGAACTATCAGTGACTCTTGTTGATGCAAGGAATCTCTCTTATATCATCTATG : GAAAAACTGATCCATATGTTAATCTAAGACTTGGAGATCAAGTAATACGC</gDNA_template>
            <first_frame> A  S  R  C  S  E  L  *  H  *  W  *  T  L  G  Q  I  T  F  N  T  N  R  A  L  D  W  S  C  F  L  G  F  C  L  P  S  Q  D  K  T  *  L  V  T  V  P  F  V  Q  P  N  G :   N  S  C  S  I  N  :  V  F  E  E  A  S  Y  *  G  F  T  S  S  L  C  P  S  K  K  N  C  V  G  F  S  E  R  E  N  S  R  A  Y  S  K  *  S  *  V  W  S  E  R  T  T  *  G  W  G  N  A  R  R  K  *  G  L  C  W  R  T  I  S  D  S  C  *  C  K  E  S  L  L  Y  H  L  W :   K  N  *  S  I  C  *  S  K  T  W  R  S  S  N  T  </first_frame>
            <second_frame>  P  V  G  V  R  N  F  D  I  D  G  E  L  W  V  K  L  R  L  I  Q  T  E  P  W  I  G  A  V  S  W  A  F  V  S  L  P  K  I  K  L  D  L  S  P  F  R  L  F  N  L  M   : A  I  P  V  L  S  M :   F  L  K  K  L  L  T  E  D  L  P  R  L  F  V  R  P  K  K  I  V  L  D  F  Q  K  G  K  T  V  G  P  I  P  S  D  R  K  S  G  Q  S  E  Q  P  K  A  G  E  M  Q  E  G  N  K  D  Y  A  G  E  L  S  V  T  L  V  D  A  R  N  L  S  Y  I  I  Y   : G  K  T  D  P  Y  V  N  L  R  L  G  D  Q  V  I  R </second_frame>
            <third_frame>   Q  S  V  F  G  T  L  T  L  M  V  N  F  G  S  N  Y  V  *  Y  K  Q  S  L  G  L  E  L  F  L  G  L  L  S  P  F  P  R  *  N  L  T  C  H  R  S  V  C  S  T  *  W  :  Q  F  L  F  Y  Q   : C  F  *  R  S  F  L  L  R  I  Y  L  V  S  L  S  V  Q  K  K  L  C  W  I  F  R  K  G  K  Q  S  G  L  F  Q  V  I  V  S  L  V  R  A  N  N  L  R  L  G  K  C  K  K  E  I  R  T  M  L  E  N  Y  Q  *  L  L  L  M  Q  G  I  S  L  I  S  S  M  :  E  K  L  I  H  M  L  I  *  D  L  E  I  K  *  Y   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0008K08.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13148" stop="12992"/>
                    <exon start="11430" stop="11412"/>
                    <exon start="10708" stop="10479"/>
                    <exon start="9258" stop="9209"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>456</number_coding_nucleotides>
                  <number_encoded_amino_acids>152</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PVGVRNFDIDGELWVKLRLIQTEPWIGAVSWAFVSLPKIKLDLSPFRLFNLMAIPVLSMFLKKLLTEDLPRLFVRPKKIVLDFQKGKTVGPIPSDRKSGQSEQPKAGEMQEGNKDYAGELSVTLVDARNLSYIIYGKTDPYVNLRLGDQVIR</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="14816" PGL_stop="14086"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14816" e_stop="14086"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.997"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="14816" e_stop="14086" e_length="731"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14816" stop="14086"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E707182" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTGTAATGTTGTTTTCGGTTCTCTTTGAAAAAGATAAAGCTTTGAGCGAATTGGGTTTTGGGTTTGGATTCATGTTTATTGGTAGTTCATTGTATACTTCAAGTTCAACAACTGTTAATTATAGCTCAAAAGGCATCTGGGTTTTTGATATTAATGGTTTTTGAATCAGTTTCTGCTATTACCCCTGATTTCCGTAAAGTATTTTGGGTATACCCATCTCCTTGTCCATGTAAAAGTAATGGCAGTTCGTCGGTGACGAGGAGGAGGAGTAGGGGGAAATTGGGTTTGGATTCGAGTGTTAGGTATAGGATTCGTGCGAAATGGGTAATTCGAGCTTGTGTGAATGGTGGAGACCACCATAGTTTTGACATGCAGATTAGGGATAGTGCTAGAAGAGGAGCTAGAAATATTGTAATTAAGAGATTTGCTGATGAATTGGATGCTTATGGAAGAGTCTCTGAGGAATTAGAAGCTTCTAGATGTTCTAGTAACAATTTTGCTAGTTTTCAAGAAGACCCTATTGTAGATAAGCTAAGGACTCAATTGGGGGTGATGCATCCATTACCTTCTCCTCCAATAAATCGAAATATTTTCGGTCTTTTTGCATTGTTTTTCTTTGTTGGTGTTGTTTTTGATAAGGTTTGGGCATCTAGAAAGAGTAATGCTAAGCCAAACAATGGAGGAAACTCCGGGATATGGTCACAGGTCCCACCAAACCTTTCTTCATTGT</gDNA_template>
            <first_frame> L  V  M  L  F  S  V  L  F  E  K  D  K  A  L  S  E  L  G  F  G  F  G  F  M  F  I  G  S  S  L  Y  T  S  S  S  T  T  V  N  Y  S  S  K  G  I  W  V  F  D  I  N  G  F  *  I  S  F  C  Y  Y  P  *  F  P  *  S  I  L  G  I  P  I  S  L  S  M  *  K  *  W  Q  F  V  G  D  E  E  E  E  *  G  E  I  G  F  G  F  E  C  *  V  *  D  S  C  E  M  G  N  S  S  L  C  E  W  W  R  P  P  *  F  *  H  A  D  *  G  *  C  *  K  R  S  *  K  Y  C  N  *  E  I  C  *  *  I  G  C  L  W  K  S  L  *  G  I  R  S  F  *  M  F  *  *  Q  F  C  *  F  S  R  R  P  Y  C  R  *  A  K  D  S  I  G  G  D  A  S  I  T  F  S  S  N  K  S  K  Y  F  R  S  F  C  I  V  F  L  C  W  C  C  F  *  *  G  L  G  I  *  K  E  *  C  *  A  K  Q  W  R  K  L  R  D  M  V  T  G  P  T  K  P  F  F  I   </first_frame>
            <second_frame>  L  *  C  C  F  R  F  S  L  K  K  I  K  L  *  A  N  W  V  L  G  L  D  S  C  L  L  V  V  H  C  I  L  Q  V  Q  Q  L  L  I  I  A  Q  K  A  S  G  F  L  I  L  M  V  F  E  S  V  S  A  I  T  P  D  F  R  K  V  F  W  V  Y  P  S  P  C  P  C  K  S  N  G  S  S  S  V  T  R  R  R  S  R  G  K  L  G  L  D  S  S  V  R  Y  R  I  R  A  K  W  V  I  R  A  C  V  N  G  G  D  H  H  S  F  D  M  Q  I  R  D  S  A  R  R  G  A  R  N  I  V  I  K  R  F  A  D  E  L  D  A  Y  G  R  V  S  E  E  L  E  A  S  R  C  S  S  N  N  F  A  S  F  Q  E  D  P  I  V  D  K  L  R  T  Q  L  G  V  M  H  P  L  P  S  P  P  I  N  R  N  I  F  G  L  F  A  L  F  F  F  V  G  V  V  F  D  K  V  W  A  S  R  K  S  N  A  K  P  N  N  G  G  N  S  G  I  W  S  Q  V  P  P  N  L  S  S  L  </second_frame>
            <third_frame>   C  N  V  V  F  G  S  L  *  K  R  *  S  F  E  R  I  G  F  W  V  W  I  H  V  Y  W  *  F  I  V  Y  F  K  F  N  N  C  *  L  *  L  K  R  H  L  G  F  *  Y  *  W  F  L  N  Q  F  L  L  L  P  L  I  S  V  K  Y  F  G  Y  T  H  L  L  V  H  V  K  V  M  A  V  R  R  *  R  G  G  G  V  G  G  N  W  V  W  I  R  V  L  G  I  G  F  V  R  N  G  *  F  E  L  V  *  M  V  E  T  T  I  V  L  T  C  R  L  G  I  V  L  E  E  E  L  E  I  L  *  L  R  D  L  L  M  N  W  M  L  M  E  E  S  L  R  N  *  K  L  L  D  V  L  V  T  I  L  L  V  F  K  K  T  L  L  *  I  S  *  G  L  N  W  G  *  C  I  H  Y  L  L  L  Q  *  I  E  I  F  S  V  F  L  H  C  F  S  L  L  V  L  F  L  I  R  F  G  H  L  E  R  V  M  L  S  Q  T  M  E  E  T  P  G  Y  G  H  R  S  H  Q  T  F  L  H  C </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0008K08.1" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14770" stop="14087"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>684</number_coding_nucleotides>
                  <number_encoded_amino_acids>228</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ANWVLGLDSCLLVVHCILQVQQLLIIAQKASGFLILMVFESVSAITPDFRKVFWVYPSPCPCKSNGSSSVTRRRSRGKLGLDSSVRYRIRAKWVIRACVNGGDHHSFDMQIRDSARRGARNIVIKRFADELDAYGRVSEELEASRCSSNNFASFQEDPIVDKLRTQLGVMHPLPSPPINRNIFGLFALFFFVGVVFDKVWASRKSNAKPNNGGNSGIWSQVPPNLSSL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="21033" PGL_stop="18551"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21033" e_stop="20848"/>
            <exon e_start="19133" e_stop="19056"/>
            <exon e_start="18972" e_stop="18902"/>
            <exon e_start="18794" e_stop="18684"/>
            <exon e_start="18598" e_stop="18551"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.873" acc_prob="0.965" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="0.995" e_score="0.974"/>
          <exon-intron don_prob="0.989" acc_prob="0.000" e_score="0.986"/>
          <exon-intron don_prob="0.985" acc_prob="0.948" e_score="0.955"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="21033" e_stop="20848" e_length="186"/>
          </exon>
          <intron i_serial="1" don_prob="0.873" acc_prob="0.965">
            <gDNA_intron_boundary i_start="20847" i_stop="19134" i_length="1714"/>
          </intron>
          <exon e_serial="2" e_score="0.974">
            <gDNA_exon_boundary e_start="19133" e_stop="19056" e_length="78"/>
          </exon>
          <intron i_serial="2" don_prob="0.899" acc_prob="0.995">
            <gDNA_intron_boundary i_start="19055" i_stop="18973" i_length="83"/>
          </intron>
          <exon e_serial="3" e_score="0.986">
            <gDNA_exon_boundary e_start="18972" e_stop="18902" e_length="71"/>
          </exon>
          <intron i_serial="3" don_prob="0.989" acc_prob="0.000">
            <gDNA_intron_boundary i_start="18901" i_stop="18795" i_length="107"/>
          </intron>
          <exon e_serial="4" e_score="0.955">
            <gDNA_exon_boundary e_start="18794" e_stop="18684" e_length="111"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.948">
            <gDNA_intron_boundary i_start="18683" i_stop="18599" i_length="85"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="18598" e_stop="18551" e_length="48"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21033" stop="20848"/>
              <exon start="19133" stop="19056"/>
              <exon start="18972" stop="18902"/>
              <exon start="18794" stop="18684"/>
              <exon start="18598" stop="18551"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265725" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGGTATGCTGCTGTATTTGGAACTATAACAGCTATAAGCCGGGCTGCAATAACAGATGAGCTTCTTGTCCTTGACCCACAGGGAGCAATGTCACTTGTTGTCCAACATACACACTTTATGCCAAAGAGATGGCGAGGGAAAGAAAATACTGAGGCCATACGAACAGAGTTTGAAACTTTATTCCAG : TATACTGGAATGATGTTACTTGAGGAGATGACCTCAATTTTTCTTACACCATATCTGCTGCTATTTGTTGTCCCAAAG : AAGGTAGATGATATTTTGCGCTTCATTGCGGACTTCACTGTTCACGTTGAGGGTGTTGGTCATGTGTGCAG : CTTCAGCGTGTTTGATTTTCAGAATCATGGCAATCGCAAATATGGATCACCATTTAATTCTTCCCGCTTGCAAAGAAGTTCTCAAGGGAAAATGGAGAAATCATTCCTAAG : CTTTCAAACTAGCTATCCTTCCTGGCAACCTGATGATCATGGAAAACA</gDNA_template>
            <first_frame> W  Y  A  A  V  F  G  T  I  T  A  I  S  R  A  A  I  T  D  E  L  L  V  L  D  P  Q  G  A  M  S  L  V  V  Q  H  T  H  F  M  P  K  R  W  R  G  K  E  N  T  E  A  I  R  T  E  F  E  T  L  F  Q  :  Y  T  G  M  M  L  L  E  E  M  T  S  I  F  L  T  P  Y  L  L  L  F  V  V  P  K  :  K  V  D  D  I  L  R  F  I  A  D  F  T  V  H  V  E  G  V  G  H  V  C  S :   F  S  V  F  D  F  Q  N  H  G  N  R  K  Y  G  S  P  F  N  S  S  R  L  Q  R  S  S  Q  G  K  M  E  K  S  F  L  S :   F  Q  T  S  Y  P  S  W  Q  P  D  D  H  G  K   </first_frame>
            <second_frame>  G  M  L  L  Y  L  E  L  *  Q  L  *  A  G  L  Q  *  Q  M  S  F  L  S  L  T  H  R  E  Q  C  H  L  L  S  N  I  H  T  L  C  Q  R  D  G  E  G  K  K  I  L  R  P  Y  E  Q  S  L  K  L  Y  S  S :   I  L  E  *  C  Y  L  R  R  *  P  Q  F  F  L  H  H  I  C  C  Y  L  L  S  Q  R :   R  *  M  I  F  C  A  S  L  R  T  S  L  F  T  L  R  V  L  V  M  C  A   : A  S  A  C  L  I  F  R  I  M  A  I  A  N  M  D  H  H  L  I  L  P  A  C  K  E  V  L  K  G  K  W  R  N  H  S  *   : A  F  K  L  A  I  L  P  G  N  L  M  I  M  E  N  </second_frame>
            <third_frame>   V  C  C  C  I  W  N  Y  N  S  Y  K  P  G  C  N  N  R  *  A  S  C  P  *  P  T  G  S  N  V  T  C  C  P  T  Y  T  L  Y  A  K  E  M  A  R  E  R  K  Y  *  G  H  T  N  R  V  *  N  F  I  P   : V  Y  W  N  D  V  T  *  G  D  D  L  N  F  S  Y  T  I  S  A  A  I  C  C  P  K   : E  G  R  *  Y  F  A  L  H  C  G  L  H  C  S  R  *  G  C  W  S  C  V  Q  :  L  Q  R  V  *  F  S  E  S  W  Q  S  Q  I  W  I  T  I  *  F  F  P  L  A  K  K  F  S  R  E  N  G  E  I  I  P  K  :  L  S  N  *  L  S  F  L  A  T  *  *  S  W  K  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0008K08.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21033" stop="20848"/>
                    <exon start="19133" stop="19056"/>
                    <exon start="18972" stop="18902"/>
                    <exon start="18794" stop="18684"/>
                    <exon start="18598" stop="18553"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WYAAVFGTITAISRAAITDELLVLDPQGAMSLVVQHTHFMPKRWRGKENTEAIRTEFETLFQYTGMMLLEEMTSIFLTPYLLLFVVPKKVDDILRFIADFTVHVEGVGHVCSFSVFDFQNHGNRKYGSPFNSSRLQRSSQGKMEKSFLSFQTSYPSWQPDDHGK</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="28826" PGL_stop="33703"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28826" e_stop="28946"/>
            <exon e_start="29748" e_stop="30011"/>
            <exon e_start="31642" e_stop="31686"/>
            <exon e_start="31803" e_stop="31877"/>
            <exon e_start="32002" e_stop="32097"/>
            <exon e_start="32605" e_stop="32682"/>
            <exon e_start="33624" e_stop="33703"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.809" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.419" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.932" acc_prob="0.984" e_score="1.000"/>
          <exon-only e_score="0.975"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28826" e_stop="28946" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.984">
            <gDNA_intron_boundary i_start="28947" i_stop="29747" i_length="801"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29748" e_stop="30011" e_length="264"/>
          </exon>
          <intron i_serial="2" don_prob="0.978" acc_prob="0.999">
            <gDNA_intron_boundary i_start="30012" i_stop="31641" i_length="1630"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="31642" e_stop="31686" e_length="45"/>
          </exon>
          <intron i_serial="3" don_prob="0.979" acc_prob="0.969">
            <gDNA_intron_boundary i_start="31687" i_stop="31802" i_length="116"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31803" e_stop="31877" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.809" acc_prob="0.990">
            <gDNA_intron_boundary i_start="31878" i_stop="32001" i_length="124"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="32002" e_stop="32097" e_length="96"/>
          </exon>
          <intron i_serial="5" don_prob="0.419" acc_prob="0.997">
            <gDNA_intron_boundary i_start="32098" i_stop="32604" i_length="507"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="32605" e_stop="32682" e_length="78"/>
          </exon>
          <intron i_serial="6" don_prob="0.932" acc_prob="0.984">
            <gDNA_intron_boundary i_start="32683" i_stop="33623" i_length="941"/>
          </intron>
          <exon e_serial="7" e_score="0.975">
            <gDNA_exon_boundary e_start="33624" e_stop="33703" e_length="80"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28826" stop="28946"/>
              <exon start="29748" stop="30011"/>
              <exon start="31642" stop="31686"/>
              <exon start="31803" stop="31877"/>
              <exon start="32002" stop="32097"/>
              <exon start="32605" stop="32682"/>
              <exon start="33624" stop="33703"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E342186" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AACAGTTGTGGAAGTGGAAGAAGACAGTATTGATAAACCCATGGCGACGGCAACAAGGCCCGGTGTCCCAAAGTCGGCAGCTATTTCCAAAGGCTACAATTTCGCTTCTACTTGGGAACAG : AATGCTCCGTTAACAGAGCAACAACAAGCAGCCATACAAGCACTTTCCCATGCAGTTGCTGAGAGACCTTTTCCGTCCAATTTGGTGAATTATTCCTTCTTGGTTGGTTTCAGAATACATCTATCTCAAACTCAAATTACTTGTTTTTATTTCAATTTCCAGGATCAAGTTTCTGGACACGATAACAGTTTCTCTGTCTCAACAAAACTCAATTCTATGGAGGATTCAGGGGCCATTGAAGCAGTCCTTGTGAATACAAATCAG : TTCTACAAGTGGTTTGCAGATCTTGAAGCAGCCATGAAATCAGAG : ACTGAAGAAAAATATCAGCATTATGTCAACACCTTAACAGAGCAGATTCAGACCTGCGATAGTATACTTCACCAG : GTGGATGAAACACTTGACTTATTCAATGAGCTGCAGTTGCAGCACCAAACAGTGGCAACAAAGACTAGAACCCTTCATGATGCGTGTGATAGACTG : CTTTTGGAGAAGCAGAAATTAATTGAGTTTGCAGAATCACTTCACAAAAAGCTCAATTACTTTGATGAATTGGAGAAT : GTTGCAACCACTTTTTATTCTCCTAGCATGAGTGTTGGTAGTACAAATTTTCTACCATTGCTTAAAAGACTTGATGAATG</gDNA_template>
            <first_frame> N  S  C  G  S  G  R  R  Q  Y  *  *  T  H  G  D  G  N  K  A  R  C  P  K  V  G  S  Y  F  Q  R  L  Q  F  R  F  Y  L  G  T   : E  C  S  V  N  R  A  T  T  S  S  H  T  S  T  F  P  C  S  C  *  E  T  F  S  V  Q  F  G  E  L  F  L  L  G  W  F  Q  N  T  S  I  S  N  S  N  Y  L  F  L  F  Q  F  P  G  S  S  F  W  T  R  *  Q  F  L  C  L  N  K  T  Q  F  Y  G  G  F  R  G  H  *  S  S  P  C  E  Y  K  S   : V  L  Q  V  V  C  R  S  *  S  S  H  E  I  R   : D  *  R  K  I  S  A  L  C  Q  H  L  N  R  A  D  S  D  L  R  *  Y  T  S  P   : G  G  *  N  T  *  L  I  Q  *  A  A  V  A  A  P  N  S  G  N  K  D  *  N  P  S  *  C  V  *  *  T   : A  F  G  E  A  E  I  N  *  V  C  R  I  T  S  Q  K  A  Q  L  L  *  *  I  G  E   : C  C  N  H  F  L  F  S  *  H  E  C  W  *  Y  K  F  S  T  I  A  *  K  T  *  *  M </first_frame>
            <second_frame>  T  V  V  E  V  E  E  D  S  I  D  K  P  M  A  T  A  T  R  P  G  V  P  K  S  A  A  I  S  K  G  Y  N  F  A  S  T  W  E  Q  :  N  A  P  L  T  E  Q  Q  Q  A  A  I  Q  A  L  S  H  A  V  A  E  R  P  F  P  S  N  L  V  N  Y  S  F  L  V  G  F  R  I  H  L  S  Q  T  Q  I  T  C  F  Y  F  N  F  Q  D  Q  V  S  G  H  D  N  S  F  S  V  S  T  K  L  N  S  M  E  D  S  G  A  I  E  A  V  L  V  N  T  N  Q  :  F  Y  K  W  F  A  D  L  E  A  A  M  K  S  E  :  T  E  E  K  Y  Q  H  Y  V  N  T  L  T  E  Q  I  Q  T  C  D  S  I  L  H  Q  :  V  D  E  T  L  D  L  F  N  E  L  Q  L  Q  H  Q  T  V  A  T  K  T  R  T  L  H  D  A  C  D  R  L  :  L  L  E  K  Q  K  L  I  E  F  A  E  S  L  H  K  K  L  N  Y  F  D  E  L  E  N  :  V  A  T  T  F  Y  S  P  S  M  S  V  G  S  T  N  F  L  P  L  L  K  R  L  D  E   </second_frame>
            <third_frame>   Q  L  W  K  W  K  K  T  V  L  I  N  P  W  R  R  Q  Q  G  P  V  S  Q  S  R  Q  L  F  P  K  A  T  I  S  L  L  L  G  N  R :   M  L  R  *  Q  S  N  N  K  Q  P  Y  K  H  F  P  M  Q  L  L  R  D  L  F  R  P  I  W  *  I  I  P  S  W  L  V  S  E  Y  I  Y  L  K  L  K  L  L  V  F  I  S  I  S  R  I  K  F  L  D  T  I  T  V  S  L  S  Q  Q  N  S  I  L  W  R  I  Q  G  P  L  K  Q  S  L  *  I  Q  I  S :   S  T  S  G  L  Q  I  L  K  Q  P  *  N  Q  R :   L  K  K  N  I  S  I  M  S  T  P  *  Q  S  R  F  R  P  A  I  V  Y  F  T  R :   W  M  K  H  L  T  Y  S  M  S  C  S  C  S  T  K  Q  W  Q  Q  R  L  E  P  F  M  M  R  V  I  D  C :   F  W  R  S  R  N  *  L  S  L  Q  N  H  F  T  K  S  S  I  T  L  M  N  W  R  M :   L  Q  P  L  F  I  L  L  A  *  V  L  V  V  Q  I  F  Y  H  C  L  K  D  L  M  N  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0008K08.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28827" stop="28946"/>
                    <exon start="29748" stop="30011"/>
                    <exon start="31642" stop="31686"/>
                    <exon start="31803" stop="31877"/>
                    <exon start="32002" stop="32097"/>
                    <exon start="32605" stop="32682"/>
                    <exon start="33624" stop="33701"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>756</number_coding_nucleotides>
                  <number_encoded_amino_acids>252</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TVVEVEEDSIDKPMATATRPGVPKSAAISKGYNFASTWEQNAPLTEQQQAAIQALSHAVAERPFPSNLVNYSFLVGFRIHLSQTQITCFYFNFQDQVSGHDNSFSVSTKLNSMEDSGAIEAVLVNTNQFYKWFADLEAAMKSETEEKYQHYVNTLTEQIQTCDSILHQVDETLDLFNELQLQHQTVATKTRTLHDACDRLLLEKQKLIEFAESLHKKLNYFDELENVATTFYSPSMSVGSTNFLPLLKRLDE</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="28835" e_stop="28946"/>
            <exon e_start="29748" e_stop="29831"/>
            <exon e_start="29910" e_stop="30011"/>
            <exon e_start="31642" e_stop="31686"/>
            <exon e_start="31803" e_stop="31877"/>
            <exon e_start="32002" e_stop="32097"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="0.984" e_score="1.000"/>
          <exon-intron don_prob="0.811" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.979" acc_prob="0.969" e_score="1.000"/>
          <exon-intron don_prob="0.809" acc_prob="0.990" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28835" e_stop="28946" e_length="112"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="0.984">
            <gDNA_intron_boundary i_start="28947" i_stop="29747" i_length="801"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="29748" e_stop="29831" e_length="84"/>
          </exon>
          <intron i_serial="2" don_prob="0.811" acc_prob="0.994">
            <gDNA_intron_boundary i_start="29832" i_stop="29909" i_length="78"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="29910" e_stop="30011" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.978" acc_prob="0.999">
            <gDNA_intron_boundary i_start="30012" i_stop="31641" i_length="1630"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="31642" e_stop="31686" e_length="45"/>
          </exon>
          <intron i_serial="4" don_prob="0.979" acc_prob="0.969">
            <gDNA_intron_boundary i_start="31687" i_stop="31802" i_length="116"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="31803" e_stop="31877" e_length="75"/>
          </exon>
          <intron i_serial="5" don_prob="0.809" acc_prob="0.990">
            <gDNA_intron_boundary i_start="31878" i_stop="32001" i_length="124"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="32002" e_stop="32097" e_length="96"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28835" stop="28946"/>
              <exon start="29748" stop="29831"/>
              <exon start="29910" stop="30011"/>
              <exon start="31642" stop="31686"/>
              <exon start="31803" stop="31877"/>
              <exon start="32002" stop="32097"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E331331" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GGAAGTGGAAGAAGACAGTATTGATAAACCCATGGCGACGGCAACAAGGCCCGGTGTCCCAAAGTCGGCAGCTATTTCCAAAGGCTACAATTTCGCTTCTACTTGGGAACAG : AATGCTCCGTTAACAGAGCAACAACAAGCAGCCATACAAGCACTTTCCCATGCAGTTGCTGAGAGACCTTTTCCGTCCAATTTG : GATCAAGTTTCTGGACACGATAACAGTTTCTCTGTCTCAACAAAACTCAATTCTATGGAGGATTCAGGGGCCATTGAAGCAGTCCTTGTGAATACAAATCAG : TTCTACAAGTGGTTTGCAGATCTTGAAGCAGCCATGAAATCAGAG : ACTGAAGAAAAATATCAGCATTATGTCAACACCTTAACAGAGCAGATTCAGACCTGCGATAGTATACTTCACCAG : GTGGATGAAACACTTGACTTATTCAATGAGCTGCAGTTGCAGCACCAAACAGTGGCAACAAAGACTAGAACCCTTCATGATGCGTGTGATAGACTG</gDNA_template>
            <first_frame> G  S  G  R  R  Q  Y  *  *  T  H  G  D  G  N  K  A  R  C  P  K  V  G  S  Y  F  Q  R  L  Q  F  R  F  Y  L  G  T   : E  C  S  V  N  R  A  T  T  S  S  H  T  S  T  F  P  C  S  C  *  E  T  F  S  V  Q  F   : G  S  S  F  W  T  R  *  Q  F  L  C  L  N  K  T  Q  F  Y  G  G  F  R  G  H  *  S  S  P  C  E  Y  K  S   : V  L  Q  V  V  C  R  S  *  S  S  H  E  I  R   : D  *  R  K  I  S  A  L  C  Q  H  L  N  R  A  D  S  D  L  R  *  Y  T  S  P   : G  G  *  N  T  *  L  I  Q  *  A  A  V  A  A  P  N  S  G  N  K  D  *  N  P  S  *  C  V  *  *  T  </first_frame>
            <second_frame>  E  V  E  E  D  S  I  D  K  P  M  A  T  A  T  R  P  G  V  P  K  S  A  A  I  S  K  G  Y  N  F  A  S  T  W  E  Q  :  N  A  P  L  T  E  Q  Q  Q  A  A  I  Q  A  L  S  H  A  V  A  E  R  P  F  P  S  N  L  :  D  Q  V  S  G  H  D  N  S  F  S  V  S  T  K  L  N  S  M  E  D  S  G  A  I  E  A  V  L  V  N  T  N  Q  :  F  Y  K  W  F  A  D  L  E  A  A  M  K  S  E  :  T  E  E  K  Y  Q  H  Y  V  N  T  L  T  E  Q  I  Q  T  C  D  S  I  L  H  Q  :  V  D  E  T  L  D  L  F  N  E  L  Q  L  Q  H  Q  T  V  A  T  K  T  R  T  L  H  D  A  C  D  R  L </second_frame>
            <third_frame>   K  W  K  K  T  V  L  I  N  P  W  R  R  Q  Q  G  P  V  S  Q  S  R  Q  L  F  P  K  A  T  I  S  L  L  L  G  N  R :   M  L  R  *  Q  S  N  N  K  Q  P  Y  K  H  F  P  M  Q  L  L  R  D  L  F  R  P  I  W :   I  K  F  L  D  T  I  T  V  S  L  S  Q  Q  N  S  I  L  W  R  I  Q  G  P  L  K  Q  S  L  *  I  Q  I  S :   S  T  S  G  L  Q  I  L  K  Q  P  *  N  Q  R :   L  K  K  N  I  S  I  M  S  T  P  *  Q  S  R  F  R  P  A  I  V  Y  F  T  R :   W  M  K  H  L  T  Y  S  M  S  C  S  C  S  T  K  Q  W  Q  Q  R  L  E  P  F  M  M  R  V  I  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0008K08.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28836" stop="28946"/>
                    <exon start="29748" stop="29831"/>
                    <exon start="29910" stop="30011"/>
                    <exon start="31642" stop="31686"/>
                    <exon start="31803" stop="31877"/>
                    <exon start="32002" stop="32097"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>513</number_coding_nucleotides>
                  <number_encoded_amino_acids>171</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVEEDSIDKPMATATRPGVPKSAAISKGYNFASTWEQNAPLTEQQQAAIQALSHAVAERPFPSNLDQVSGHDNSFSVSTKLNSMEDSGAIEAVLVNTNQFYKWFADLEAAMKSETEEKYQHYVNTLTEQIQTCDSILHQVDETLDLFNELQLQHQTVATKTRTLHDACDRL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="33764" PGL_stop="48010"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33764" e_stop="34021"/>
            <exon e_start="34186" e_stop="34248"/>
            <exon e_start="34346" e_stop="34447"/>
            <exon e_start="34600" e_stop="34704"/>
            <exon e_start="34882" e_stop="34974"/>
            <exon e_start="35497" e_stop="35585"/>
            <exon e_start="38421" e_stop="38640"/>
            <exon e_start="39978" e_stop="40064"/>
            <exon e_start="40712" e_stop="40828"/>
            <exon e_start="40915" e_stop="40947"/>
            <exon e_start="41081" e_stop="41167"/>
            <exon e_start="41245" e_stop="41307"/>
            <exon e_start="42399" e_stop="42515"/>
            <exon e_start="46025" e_stop="46117"/>
            <exon e_start="47894" e_stop="48010"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.968" acc_prob="0.127" e_score="0.890"/>
          <exon-intron don_prob="0.988" acc_prob="0.989" e_score="0.952"/>
          <exon-intron don_prob="0.996" acc_prob="0.415" e_score="0.931"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="0.971"/>
          <exon-intron don_prob="0.901" acc_prob="0.910" e_score="0.978"/>
          <exon-intron don_prob="0.956" acc_prob="0.659" e_score="0.966"/>
          <exon-intron don_prob="0.955" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.886" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.613" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.957" e_score="0.989"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.890">
            <gDNA_exon_boundary e_start="33764" e_stop="34021" e_length="258"/>
          </exon>
          <intron i_serial="1" don_prob="0.968" acc_prob="0.127">
            <gDNA_intron_boundary i_start="34022" i_stop="34185" i_length="164"/>
          </intron>
          <exon e_serial="2" e_score="0.952">
            <gDNA_exon_boundary e_start="34186" e_stop="34248" e_length="63"/>
          </exon>
          <intron i_serial="2" don_prob="0.988" acc_prob="0.989">
            <gDNA_intron_boundary i_start="34249" i_stop="34345" i_length="97"/>
          </intron>
          <exon e_serial="3" e_score="0.931">
            <gDNA_exon_boundary e_start="34346" e_stop="34447" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.415">
            <gDNA_intron_boundary i_start="34448" i_stop="34599" i_length="152"/>
          </intron>
          <exon e_serial="4" e_score="0.971">
            <gDNA_exon_boundary e_start="34600" e_stop="34704" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="34705" i_stop="34881" i_length="177"/>
          </intron>
          <exon e_serial="5" e_score="0.978">
            <gDNA_exon_boundary e_start="34882" e_stop="34974" e_length="93"/>
          </exon>
          <intron i_serial="5" don_prob="0.901" acc_prob="0.910">
            <gDNA_intron_boundary i_start="34975" i_stop="35496" i_length="522"/>
          </intron>
          <exon e_serial="6" e_score="0.966">
            <gDNA_exon_boundary e_start="35497" e_stop="35585" e_length="89"/>
          </exon>
          <intron i_serial="6" don_prob="0.956" acc_prob="0.659">
            <gDNA_intron_boundary i_start="35586" i_stop="38420" i_length="2835"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="38421" e_stop="38640" e_length="220"/>
          </exon>
          <intron i_serial="7" don_prob="0.955" acc_prob="0.991">
            <gDNA_intron_boundary i_start="38641" i_stop="39977" i_length="1337"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="39978" e_stop="40064" e_length="87"/>
          </exon>
          <intron i_serial="8" don_prob="0.991" acc_prob="0.985">
            <gDNA_intron_boundary i_start="40065" i_stop="40711" i_length="647"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="40712" e_stop="40828" e_length="117"/>
          </exon>
          <intron i_serial="9" don_prob="0.994" acc_prob="0.886">
            <gDNA_intron_boundary i_start="40829" i_stop="40914" i_length="86"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="40915" e_stop="40947" e_length="33"/>
          </exon>
          <intron i_serial="10" don_prob="0.978" acc_prob="0.994">
            <gDNA_intron_boundary i_start="40948" i_stop="41080" i_length="133"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="41081" e_stop="41167" e_length="87"/>
          </exon>
          <intron i_serial="11" don_prob="0.999" acc_prob="0.613">
            <gDNA_intron_boundary i_start="41168" i_stop="41244" i_length="77"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="41245" e_stop="41307" e_length="63"/>
          </exon>
          <intron i_serial="12" don_prob="0.899" acc_prob="0.998">
            <gDNA_intron_boundary i_start="41308" i_stop="42398" i_length="1091"/>
          </intron>
          <exon e_serial="13" e_score="1.000">
            <gDNA_exon_boundary e_start="42399" e_stop="42515" e_length="117"/>
          </exon>
          <intron i_serial="13" don_prob="0.997" acc_prob="0.957">
            <gDNA_intron_boundary i_start="42516" i_stop="46024" i_length="3509"/>
          </intron>
          <exon e_serial="14" e_score="0.989">
            <gDNA_exon_boundary e_start="46025" e_stop="46117" e_length="93"/>
          </exon>
          <intron i_serial="14" don_prob="0.996" acc_prob="0.957">
            <gDNA_intron_boundary i_start="46118" i_stop="47893" i_length="1776"/>
          </intron>
          <exon e_serial="15" e_score="1.000">
            <gDNA_exon_boundary e_start="47894" e_stop="48010" e_length="117"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33764" stop="34021"/>
              <exon start="34186" stop="34248"/>
              <exon start="34346" stop="34447"/>
              <exon start="34600" stop="34704"/>
              <exon start="34882" stop="34974"/>
              <exon start="35497" stop="35585"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E687822" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33767" stop="34021"/>
              <exon start="34186" stop="34248"/>
              <exon start="34346" stop="34447"/>
              <exon start="34600" stop="34704"/>
              <exon start="34882" stop="34974"/>
              <exon start="35497" stop="35545"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327185" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34348" stop="34447"/>
              <exon start="34600" stop="34704"/>
              <exon start="34882" stop="34974"/>
              <exon start="35497" stop="35585"/>
              <exon start="38421" stop="38640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34348" stop="34447"/>
              <exon start="34600" stop="34704"/>
              <exon start="34882" stop="34974"/>
              <exon start="35497" stop="35585"/>
              <exon start="38421" stop="38575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35529" stop="35585"/>
              <exon start="38421" stop="38640"/>
              <exon start="39978" stop="40064"/>
              <exon start="40712" stop="40828"/>
              <exon start="40915" stop="40947"/>
              <exon start="41081" stop="41167"/>
              <exon start="41245" stop="41275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38494" stop="38640"/>
              <exon start="39978" stop="40064"/>
              <exon start="40712" stop="40828"/>
              <exon start="40915" stop="40947"/>
              <exon start="41081" stop="41167"/>
              <exon start="41245" stop="41307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40019" stop="40064"/>
              <exon start="40712" stop="40828"/>
              <exon start="40915" stop="40947"/>
              <exon start="41081" stop="41167"/>
              <exon start="41245" stop="41307"/>
              <exon start="42399" stop="42515"/>
              <exon start="46025" stop="46117"/>
              <exon start="47894" stop="48010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698349" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CACTGCAATGATGTAAAATCCATACTTCTCTTTGGTTATTTGTAAAGTTTACAATGTGGACATGTCTAGAGTCACAGGTTTCTTGTAGGGATTTGTTCTTTTATCAAGATTTAAGTCCTGTTGAATTAAGCTTGTAAATCTTTGCATAAGAGCACAAATAACCATTGTGTTTCTCCTCTGCGTTACTGAAGATATGTTGAGAGTAACCCACAATATGCAGAGTGCAGCATTTATTTGGTCAAGTTTCGACAACTTCAG : TCTCGAGCTCTGGGAATGATTCGCTCTCATGTTCTTTCCGTTCTTAGAAGTACTTCTTCTCAG : GTCCAGGCTGCAATACGAAGCAGTGGTGGTAGCAAAACATCTTTTGCCGAGGGTATAGAGTCATCTATAATATATGTACGCTTCAAGGCTGCAGCAAATGAG : CTTAAGCCTATCTTGGAGGAAATTGAAAGTAGAACACCTAGAAAAGAGTATATTCAACTTCTTGAAGAATGCCACAAACTCTATTGTGAACAGCGCCTTTCCTTG : ATAAGAGGTATAGTGCAACAGCGGATCTCTGAATTTTCCAGGAAAGAAGCACTGTCGTCTTTAACTAGATCTGGATGTGCATATTTAATGCAG : GTGTGTCAGCTAGAGCATCAACTTTTCAATCACTTCTTCCCATCATCTTCAGAGGACATTTCGAGTTTGACTCCTCTTGTAGATCCTCT : GTGTACTTTCCTCTATGATACATTGCGTCCTAAACTTATTCACGAAACAAATCTGGATGTTCTTTGTGAACTGGTTGATATCCTTAAAGTTGAAGTTCTAGGAGAACAATTGAGCAGACGGGGGGAATCATTGGCTGGGCTACGTCCAACGCTGGACAGAATTCTAGCAGATGTACATGAGCGATTAACTTTTCGTTCTCGCACCTATATCCGTGATGAG : ATTGCAAATTACCTTCCTTCAGAGGAGGATCTGGATTACCCTAAAAAGTTGGAGCAATCTGTTTCAGCAGAACTGGATTCACCATCT : ACTGAACTAAATCAAGATGTTTCCGGAACTTGGTATCCTCCACTGGAGAAAACCATATCATGTCTATCAAAACTGTACTGTTCTCTAGAAACAGCTGTTTTTACTGGATTGGCTCAG : GAAGCTGTAGAGTTTTGCTCGTTATCCATTCAA : AAAGCTAGCAAACTTATTGGCAAAAGATCGTCATCAATGGATGCACAACTTTTCCTAATAAAGCATCTACTCATCCTGAGGGAGCAG : ATTGCCCCATTCGACATAGAATTTTCAGTCACGCATAAGGAACTTGATTTTTCACATTTGCTG : GAGCATCTGAGGCGGATTCTAAGGGGTCAGGCATCAATCTTTGACTGGTCGAGATCAACTTCATTAGCTAGAACTTTATCTCCACGAGTTTTGGAAAGTCAAATTGACGCCAAGAAG : GAATTGGAGAAAAGCCTGAAAACTACTTGCGAGGAGTTCATTATGTCAGTGACTAAGTTAGTTGTGGAACCATTGCTTTCTTTTGTGACAAAG : GTTACGGCTGTTAAAGTTGCATTATCTAGTAGTCAAAATCAAAAACTGGAGTCTGGGATTGCAAAGCCACTCAAGGATCATGCTTTTGCTTCACCAGAAAAGATTGCCGAGCTTCTT</gDNA_template>
            <first_frame> H  C  N  D  V  K  S  I  L  L  F  G  Y  L  *  S  L  Q  C  G  H  V  *  S  H  R  F  L  V  G  I  C  S  F  I  K  I  *  V  L  L  N  *  A  C  K  S  L  H  K  S  T  N  N  H  C  V  S  P  L  R  Y  *  R  Y  V  E  S  N  P  Q  Y  A  E  C  S  I  Y  L  V  K  F  R  Q  L  Q  :  S  R  A  L  G  M  I  R  S  H  V  L  S  V  L  R  S  T  S  S  Q  :  V  Q  A  A  I  R  S  S  G  G  S  K  T  S  F  A  E  G  I  E  S  S  I  I  Y  V  R  F  K  A  A  A  N  E  :  L  K  P  I  L  E  E  I  E  S  R  T  P  R  K  E  Y  I  Q  L  L  E  E  C  H  K  L  Y  C  E  Q  R  L  S  L  :  I  R  G  I  V  Q  Q  R  I  S  E  F  S  R  K  E  A  L  S  S  L  T  R  S  G  C  A  Y  L  M  Q  :  V  C  Q  L  E  H  Q  L  F  N  H  F  F  P  S  S  S  E  D  I  S  S  L  T  P  L  V  D  P  L :   C  T  F  L  Y  D  T  L  R  P  K  L  I  H  E  T  N  L  D  V  L  C  E  L  V  D  I  L  K  V  E  V  L  G  E  Q  L  S  R  R  G  E  S  L  A  G  L  R  P  T  L  D  R  I  L  A  D  V  H  E  R  L  T  F  R  S  R  T  Y  I  R  D  E  :  I  A  N  Y  L  P  S  E  E  D  L  D  Y  P  K  K  L  E  Q  S  V  S  A  E  L  D  S  P  S  :  T  E  L  N  Q  D  V  S  G  T  W  Y  P  P  L  E  K  T  I  S  C  L  S  K  L  Y  C  S  L  E  T  A  V  F  T  G  L  A  Q  :  E  A  V  E  F  C  S  L  S  I  Q  :  K  A  S  K  L  I  G  K  R  S  S  S  M  D  A  Q  L  F  L  I  K  H  L  L  I  L  R  E  Q  :  I  A  P  F  D  I  E  F  S  V  T  H  K  E  L  D  F  S  H  L  L  :  E  H  L  R  R  I  L  R  G  Q  A  S  I  F  D  W  S  R  S  T  S  L  A  R  T  L  S  P  R  V  L  E  S  Q  I  D  A  K  K  :  E  L  E  K  S  L  K  T  T  C  E  E  F  I  M  S  V  T  K  L  V  V  E  P  L  L  S  F  V  T  K  :  V  T  A  V  K  V  A  L  S  S  S  Q  N  Q  K  L  E  S  G  I  A  K  P  L  K  D  H  A  F  A  S  P  E  K  I  A  E  L  L </first_frame>
            <second_frame>  T  A  M  M  *  N  P  Y  F  S  L  V  I  C  K  V  Y  N  V  D  M  S  R  V  T  G  F  L  *  G  F  V  L  L  S  R  F  K  S  C  *  I  K  L  V  N  L  C  I  R  A  Q  I  T  I  V  F  L  L  C  V  T  E  D  M  L  R  V  T  H  N  M  Q  S  A  A  F  I  W  S  S  F  D  N  F  S :   L  E  L  W  E  *  F  A  L  M  F  F  P  F  L  E  V  L  L  L  R :   S  R  L  Q  Y  E  A  V  V  V  A  K  H  L  L  P  R  V  *  S  H  L  *  Y  M  Y  A  S  R  L  Q  Q  M  S :   L  S  L  S  W  R  K  L  K  V  E  H  L  E  K  S  I  F  N  F  L  K  N  A  T  N  S  I  V  N  S  A  F  P  * :   *  E  V  *  C  N  S  G  S  L  N  F  P  G  K  K  H  C  R  L  *  L  D  L  D  V  H  I  *  C  R :   C  V  S  *  S  I  N  F  S  I  T  S  S  H  H  L  Q  R  T  F  R  V  *  L  L  L  *  I  L   : C  V  L  S  S  M  I  H  C  V  L  N  L  F  T  K  Q  I  W  M  F  F  V  N  W  L  I  S  L  K  L  K  F  *  E  N  N  *  A  D  G  G  N  H  W  L  G  Y  V  Q  R  W  T  E  F  *  Q  M  Y  M  S  D  *  L  F  V  L  A  P  I  S  V  M  R :   L  Q  I  T  F  L  Q  R  R  I  W  I  T  L  K  S  W  S  N  L  F  Q  Q  N  W  I  H  H  L :   L  N  *  I  K  M  F  P  E  L  G  I  L  H  W  R  K  P  Y  H  V  Y  Q  N  C  T  V  L  *  K  Q  L  F  L  L  D  W  L  R :   K  L  *  S  F  A  R  Y  P  F  K :   K  L  A  N  L  L  A  K  D  R  H  Q  W  M  H  N  F  S  *  *  S  I  Y  S  S  *  G  S  R :   L  P  H  S  T  *  N  F  Q  S  R  I  R  N  L  I  F  H  I  C  W :   S  I  *  G  G  F  *  G  V  R  H  Q  S  L  T  G  R  D  Q  L  H  *  L  E  L  Y  L  H  E  F  W  K  V  K  L  T  P  R  R :   N  W  R  K  A  *  K  L  L  A  R  S  S  L  C  Q  *  L  S  *  L  W  N  H  C  F  L  L  *  Q  R :   L  R  L  L  K  L  H  Y  L  V  V  K  I  K  N  W  S  L  G  L  Q  S  H  S  R  I  M  L  L  L  H  Q  K  R  L  P  S  F   </second_frame>
            <third_frame>   L  Q  *  C  K  I  H  T  S  L  W  L  F  V  K  F  T  M  W  T  C  L  E  S  Q  V  S  C  R  D  L  F  F  Y  Q  D  L  S  P  V  E  L  S  L  *  I  F  A  *  E  H  K  *  P  L  C  F  S  S  A  L  L  K  I  C  *  E  *  P  T  I  C  R  V  Q  H  L  F  G  Q  V  S  T  T  S   : V  S  S  S  G  N  D  S  L  S  C  S  F  R  S  *  K  Y  F  F  S   : G  P  G  C  N  T  K  Q  W  W  *  Q  N  I  F  C  R  G  Y  R  V  I  Y  N  I  C  T  L  Q  G  C  S  K  *   : A  *  A  Y  L  G  G  N  *  K  *  N  T  *  K  R  V  Y  S  T  S  *  R  M  P  Q  T  L  L  *  T  A  P  F  L   : D  K  R  Y  S  A  T  A  D  L  *  I  F  Q  E  R  S  T  V  V  F  N  *  I  W  M  C  I  F  N  A   : G  V  S  A  R  A  S  T  F  Q  S  L  L  P  I  I  F  R  G  H  F  E  F  D  S  S  C  R  S  S  :  V  Y  F  P  L  *  Y  I  A  S  *  T  Y  S  R  N  K  S  G  C  S  L  *  T  G  *  Y  P  *  S  *  S  S  R  R  T  I  E  Q  T  G  G  I  I  G  W  A  T  S  N  A  G  Q  N  S  S  R  C  T  *  A  I  N  F  S  F  S  H  L  Y  P  *  *   : D  C  K  L  P  S  F  R  G  G  S  G  L  P  *  K  V  G  A  I  C  F  S  R  T  G  F  T  I   : Y  *  T  K  S  R  C  F  R  N  L  V  S  S  T  G  E  N  H  I  M  S  I  K  T  V  L  F  S  R  N  S  C  F  Y  W  I  G  S   : G  S  C  R  V  L  L  V  I  H  S   : K  S  *  Q  T  Y  W  Q  K  I  V  I  N  G  C  T  T  F  P  N  K  A  S  T  H  P  E  G  A   : D  C  P  I  R  H  R  I  F  S  H  A  *  G  T  *  F  F  T  F  A   : G  A  S  E  A  D  S  K  G  S  G  I  N  L  *  L  V  E  I  N  F  I  S  *  N  F  I  S  T  S  F  G  K  S  N  *  R  Q  E   : G  I  G  E  K  P  E  N  Y  L  R  G  V  H  Y  V  S  D  *  V  S  C  G  T  I  A  F  F  C  D  K   : G  Y  G  C  *  S  C  I  I  *  *  S  K  S  K  T  G  V  W  D  C  K  A  T  Q  G  S  C  F  C  F  T  R  K  D  C  R  A  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0008K08.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33953" stop="34021"/>
                    <exon start="34186" stop="34248"/>
                    <exon start="34346" stop="34447"/>
                    <exon start="34600" stop="34704"/>
                    <exon start="34882" stop="34974"/>
                    <exon start="35497" stop="35585"/>
                    <exon start="38421" stop="38640"/>
                    <exon start="39978" stop="40064"/>
                    <exon start="40712" stop="40828"/>
                    <exon start="40915" stop="40947"/>
                    <exon start="41081" stop="41167"/>
                    <exon start="41245" stop="41307"/>
                    <exon start="42399" stop="42515"/>
                    <exon start="46025" stop="46117"/>
                    <exon start="47894" stop="48010"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1455</number_coding_nucleotides>
                  <number_encoded_amino_acids>485</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RYVESNPQYAECSIYLVKFRQLQSRALGMIRSHVLSVLRSTSSQVQAAIRSSGGSKTSFAEGIESSIIYVRFKAAANELKPILEEIESRTPRKEYIQLLEECHKLYCEQRLSLIRGIVQQRISEFSRKEALSSLTRSGCAYLMQVCQLEHQLFNHFFPSSSEDISSLTPLVDPLCTFLYDTLRPKLIHETNLDVLCELVDILKVEVLGEQLSRRGESLAGLRPTLDRILADVHERLTFRSRTYIRDEIANYLPSEEDLDYPKKLEQSVSAELDSPSTELNQDVSGTWYPPLEKTISCLSKLYCSLETAVFTGLAQEAVEFCSLSIQKASKLIGKRSSSMDAQLFLIKHLLILREQIAPFDIEFSVTHKELDFSHLLEHLRRILRGQASIFDWSRSTSLARTLSPRVLESQIDAKKELEKSLKTTCEEFIMSVTKLVVEPLLSFVTKVTAVKVALSSSQNQKLESGIAKPLKDHAFASPEKIAELL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="34147" e_stop="34248"/>
            <exon e_start="34346" e_stop="34447"/>
            <exon e_start="34600" e_stop="34704"/>
            <exon e_start="34882" e_stop="34974"/>
            <exon e_start="35497" e_stop="35585"/>
            <exon e_start="38421" e_stop="38640"/>
            <exon e_start="39978" e_stop="40064"/>
            <exon e_start="40712" e_stop="40828"/>
            <exon e_start="40915" e_stop="40947"/>
            <exon e_start="41081" e_stop="41167"/>
            <exon e_start="41245" e_stop="41307"/>
            <exon e_start="42399" e_stop="42515"/>
            <exon e_start="46025" e_stop="46117"/>
            <exon e_start="47894" e_stop="48010"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.415" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.901" acc_prob="0.910" e_score="1.000"/>
          <exon-intron don_prob="0.956" acc_prob="0.659" e_score="1.000"/>
          <exon-intron don_prob="0.955" acc_prob="0.991" e_score="1.000"/>
          <exon-intron don_prob="0.991" acc_prob="0.985" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.886" e_score="1.000"/>
          <exon-intron don_prob="0.978" acc_prob="0.994" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.613" e_score="1.000"/>
          <exon-intron don_prob="0.899" acc_prob="0.998" e_score="1.000"/>
          <exon-intron don_prob="0.997" acc_prob="0.957" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.957" e_score="0.989"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="34147" e_stop="34248" e_length="102"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.989">
            <gDNA_intron_boundary i_start="34249" i_stop="34345" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="34346" e_stop="34447" e_length="102"/>
          </exon>
          <intron i_serial="2" don_prob="0.996" acc_prob="0.415">
            <gDNA_intron_boundary i_start="34448" i_stop="34599" i_length="152"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="34600" e_stop="34704" e_length="105"/>
          </exon>
          <intron i_serial="3" don_prob="0.997" acc_prob="0.995">
            <gDNA_intron_boundary i_start="34705" i_stop="34881" i_length="177"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="34882" e_stop="34974" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.901" acc_prob="0.910">
            <gDNA_intron_boundary i_start="34975" i_stop="35496" i_length="522"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="35497" e_stop="35585" e_length="89"/>
          </exon>
          <intron i_serial="5" don_prob="0.956" acc_prob="0.659">
            <gDNA_intron_boundary i_start="35586" i_stop="38420" i_length="2835"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="38421" e_stop="38640" e_length="220"/>
          </exon>
          <intron i_serial="6" don_prob="0.955" acc_prob="0.991">
            <gDNA_intron_boundary i_start="38641" i_stop="39977" i_length="1337"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="39978" e_stop="40064" e_length="87"/>
          </exon>
          <intron i_serial="7" don_prob="0.991" acc_prob="0.985">
            <gDNA_intron_boundary i_start="40065" i_stop="40711" i_length="647"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="40712" e_stop="40828" e_length="117"/>
          </exon>
          <intron i_serial="8" don_prob="0.994" acc_prob="0.886">
            <gDNA_intron_boundary i_start="40829" i_stop="40914" i_length="86"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="40915" e_stop="40947" e_length="33"/>
          </exon>
          <intron i_serial="9" don_prob="0.978" acc_prob="0.994">
            <gDNA_intron_boundary i_start="40948" i_stop="41080" i_length="133"/>
          </intron>
          <exon e_serial="10" e_score="1.000">
            <gDNA_exon_boundary e_start="41081" e_stop="41167" e_length="87"/>
          </exon>
          <intron i_serial="10" don_prob="0.999" acc_prob="0.613">
            <gDNA_intron_boundary i_start="41168" i_stop="41244" i_length="77"/>
          </intron>
          <exon e_serial="11" e_score="1.000">
            <gDNA_exon_boundary e_start="41245" e_stop="41307" e_length="63"/>
          </exon>
          <intron i_serial="11" don_prob="0.899" acc_prob="0.998">
            <gDNA_intron_boundary i_start="41308" i_stop="42398" i_length="1091"/>
          </intron>
          <exon e_serial="12" e_score="1.000">
            <gDNA_exon_boundary e_start="42399" e_stop="42515" e_length="117"/>
          </exon>
          <intron i_serial="12" don_prob="0.997" acc_prob="0.957">
            <gDNA_intron_boundary i_start="42516" i_stop="46024" i_length="3509"/>
          </intron>
          <exon e_serial="13" e_score="0.989">
            <gDNA_exon_boundary e_start="46025" e_stop="46117" e_length="93"/>
          </exon>
          <intron i_serial="13" don_prob="0.996" acc_prob="0.957">
            <gDNA_intron_boundary i_start="46118" i_stop="47893" i_length="1776"/>
          </intron>
          <exon e_serial="14" e_score="1.000">
            <gDNA_exon_boundary e_start="47894" e_stop="48010" e_length="117"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34147" stop="34248"/>
              <exon start="34346" stop="34447"/>
              <exon start="34600" stop="34704"/>
              <exon start="34882" stop="34974"/>
              <exon start="35497" stop="35585"/>
              <exon start="38421" stop="38497"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249802" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34348" stop="34447"/>
              <exon start="34600" stop="34704"/>
              <exon start="34882" stop="34974"/>
              <exon start="35497" stop="35585"/>
              <exon start="38421" stop="38640"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E265693" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="34348" stop="34447"/>
              <exon start="34600" stop="34704"/>
              <exon start="34882" stop="34974"/>
              <exon start="35497" stop="35585"/>
              <exon start="38421" stop="38575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266187" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="35529" stop="35585"/>
              <exon start="38421" stop="38640"/>
              <exon start="39978" stop="40064"/>
              <exon start="40712" stop="40828"/>
              <exon start="40915" stop="40947"/>
              <exon start="41081" stop="41167"/>
              <exon start="41245" stop="41275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252285" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38494" stop="38640"/>
              <exon start="39978" stop="40064"/>
              <exon start="40712" stop="40828"/>
              <exon start="40915" stop="40947"/>
              <exon start="41081" stop="41167"/>
              <exon start="41245" stop="41307"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E333894" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40019" stop="40064"/>
              <exon start="40712" stop="40828"/>
              <exon start="40915" stop="40947"/>
              <exon start="41081" stop="41167"/>
              <exon start="41245" stop="41307"/>
              <exon start="42399" stop="42515"/>
              <exon start="46025" stop="46117"/>
              <exon start="47894" stop="48010"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698349" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTCTCTATCTGTTTTTTCTATGTCCTCCTGTAACCAGTCTCGAGCTCTGGGAATGATTCGCTCTCATGTTCTTTCCGTTCTTAGAAGTACTTCTTCTCAG : GTCCAGGCTGCAATACGAAGCAGTGGTGGTAGCAAAACATCTTTTGCCGAGGGTATAGAGTCATCTATAATATATGTACGCTTCAAGGCTGCAGCAAATGAG : CTTAAGCCTATCTTGGAGGAAATTGAAAGTAGAACACCTAGAAAAGAGTATATTCAACTTCTTGAAGAATGCCACAAACTCTATTGTGAACAGCGCCTTTCCTTG : ATAAGAGGTATAGTGCAACAGCGGATCTCTGAATTTTCCAGGAAAGAAGCACTGTCGTCTTTAACTAGATCTGGATGTGCATATTTAATGCAG : GTGTGTCAGCTAGAGCATCAACTTTTCAATCACTTCTTCCCATCATCTTCAGAGGACATTTCGAGTTTGACTCCTCTTGTAGATCCTCT : GTGTACTTTCCTCTATGATACATTGCGTCCTAAACTTATTCACGAAACAAATCTGGATGTTCTTTGTGAACTGGTTGATATCCTTAAAGTTGAAGTTCTAGGAGAACAATTGAGCAGACGGGGGGAATCATTGGCTGGGCTACGTCCAACGCTGGACAGAATTCTAGCAGATGTACATGAGCGATTAACTTTTCGTTCTCGCACCTATATCCGTGATGAG : ATTGCAAATTACCTTCCTTCAGAGGAGGATCTGGATTACCCTAAAAAGTTGGAGCAATCTGTTTCAGCAGAACTGGATTCACCATCT : ACTGAACTAAATCAAGATGTTTCCGGAACTTGGTATCCTCCACTGGAGAAAACCATATCATGTCTATCAAAACTGTACTGTTCTCTAGAAACAGCTGTTTTTACTGGATTGGCTCAG : GAAGCTGTAGAGTTTTGCTCGTTATCCATTCAA : AAAGCTAGCAAACTTATTGGCAAAAGATCGTCATCAATGGATGCACAACTTTTCCTAATAAAGCATCTACTCATCCTGAGGGAGCAG : ATTGCCCCATTCGACATAGAATTTTCAGTCACGCATAAGGAACTTGATTTTTCACATTTGCTG : GAGCATCTGAGGCGGATTCTAAGGGGTCAGGCATCAATCTTTGACTGGTCGAGATCAACTTCATTAGCTAGAACTTTATCTCCACGAGTTTTGGAAAGTCAAATTGACGCCAAGAAG : GAATTGGAGAAAAGCCTGAAAACTACTTGCGAGGAGTTCATTATGTCAGTGACTAAGTTAGTTGTGGAACCATTGCTTTCTTTTGTGACAAAG : GTTACGGCTGTTAAAGTTGCATTATCTAGTAGTCAAAATCAAAAACTGGAGTCTGGGATTGCAAAGCCACTCAAGGATCATGCTTTTGCTTCACCAGAAAAGATTGCCGAGCTTCTT</gDNA_template>
            <first_frame> F  S  L  S  V  F  S  M  S  S  C  N  Q  S  R  A  L  G  M  I  R  S  H  V  L  S  V  L  R  S  T  S  S  Q  :  V  Q  A  A  I  R  S  S  G  G  S  K  T  S  F  A  E  G  I  E  S  S  I  I  Y  V  R  F  K  A  A  A  N  E  :  L  K  P  I  L  E  E  I  E  S  R  T  P  R  K  E  Y  I  Q  L  L  E  E  C  H  K  L  Y  C  E  Q  R  L  S  L  :  I  R  G  I  V  Q  Q  R  I  S  E  F  S  R  K  E  A  L  S  S  L  T  R  S  G  C  A  Y  L  M  Q  :  V  C  Q  L  E  H  Q  L  F  N  H  F  F  P  S  S  S  E  D  I  S  S  L  T  P  L  V  D  P  L :   C  T  F  L  Y  D  T  L  R  P  K  L  I  H  E  T  N  L  D  V  L  C  E  L  V  D  I  L  K  V  E  V  L  G  E  Q  L  S  R  R  G  E  S  L  A  G  L  R  P  T  L  D  R  I  L  A  D  V  H  E  R  L  T  F  R  S  R  T  Y  I  R  D  E  :  I  A  N  Y  L  P  S  E  E  D  L  D  Y  P  K  K  L  E  Q  S  V  S  A  E  L  D  S  P  S  :  T  E  L  N  Q  D  V  S  G  T  W  Y  P  P  L  E  K  T  I  S  C  L  S  K  L  Y  C  S  L  E  T  A  V  F  T  G  L  A  Q  :  E  A  V  E  F  C  S  L  S  I  Q  :  K  A  S  K  L  I  G  K  R  S  S  S  M  D  A  Q  L  F  L  I  K  H  L  L  I  L  R  E  Q  :  I  A  P  F  D  I  E  F  S  V  T  H  K  E  L  D  F  S  H  L  L  :  E  H  L  R  R  I  L  R  G  Q  A  S  I  F  D  W  S  R  S  T  S  L  A  R  T  L  S  P  R  V  L  E  S  Q  I  D  A  K  K  :  E  L  E  K  S  L  K  T  T  C  E  E  F  I  M  S  V  T  K  L  V  V  E  P  L  L  S  F  V  T  K  :  V  T  A  V  K  V  A  L  S  S  S  Q  N  Q  K  L  E  S  G  I  A  K  P  L  K  D  H  A  F  A  S  P  E  K  I  A  E  L  L </first_frame>
            <second_frame>  S  L  Y  L  F  F  L  C  P  P  V  T  S  L  E  L  W  E  *  F  A  L  M  F  F  P  F  L  E  V  L  L  L  R :   S  R  L  Q  Y  E  A  V  V  V  A  K  H  L  L  P  R  V  *  S  H  L  *  Y  M  Y  A  S  R  L  Q  Q  M  S :   L  S  L  S  W  R  K  L  K  V  E  H  L  E  K  S  I  F  N  F  L  K  N  A  T  N  S  I  V  N  S  A  F  P  * :   *  E  V  *  C  N  S  G  S  L  N  F  P  G  K  K  H  C  R  L  *  L  D  L  D  V  H  I  *  C  R :   C  V  S  *  S  I  N  F  S  I  T  S  S  H  H  L  Q  R  T  F  R  V  *  L  L  L  *  I  L   : C  V  L  S  S  M  I  H  C  V  L  N  L  F  T  K  Q  I  W  M  F  F  V  N  W  L  I  S  L  K  L  K  F  *  E  N  N  *  A  D  G  G  N  H  W  L  G  Y  V  Q  R  W  T  E  F  *  Q  M  Y  M  S  D  *  L  F  V  L  A  P  I  S  V  M  R :   L  Q  I  T  F  L  Q  R  R  I  W  I  T  L  K  S  W  S  N  L  F  Q  Q  N  W  I  H  H  L :   L  N  *  I  K  M  F  P  E  L  G  I  L  H  W  R  K  P  Y  H  V  Y  Q  N  C  T  V  L  *  K  Q  L  F  L  L  D  W  L  R :   K  L  *  S  F  A  R  Y  P  F  K :   K  L  A  N  L  L  A  K  D  R  H  Q  W  M  H  N  F  S  *  *  S  I  Y  S  S  *  G  S  R :   L  P  H  S  T  *  N  F  Q  S  R  I  R  N  L  I  F  H  I  C  W :   S  I  *  G  G  F  *  G  V  R  H  Q  S  L  T  G  R  D  Q  L  H  *  L  E  L  Y  L  H  E  F  W  K  V  K  L  T  P  R  R :   N  W  R  K  A  *  K  L  L  A  R  S  S  L  C  Q  *  L  S  *  L  W  N  H  C  F  L  L  *  Q  R :   L  R  L  L  K  L  H  Y  L  V  V  K  I  K  N  W  S  L  G  L  Q  S  H  S  R  I  M  L  L  L  H  Q  K  R  L  P  S  F   </second_frame>
            <third_frame>   L  S  I  C  F  F  Y  V  L  L  *  P  V  S  S  S  G  N  D  S  L  S  C  S  F  R  S  *  K  Y  F  F  S   : G  P  G  C  N  T  K  Q  W  W  *  Q  N  I  F  C  R  G  Y  R  V  I  Y  N  I  C  T  L  Q  G  C  S  K  *   : A  *  A  Y  L  G  G  N  *  K  *  N  T  *  K  R  V  Y  S  T  S  *  R  M  P  Q  T  L  L  *  T  A  P  F  L   : D  K  R  Y  S  A  T  A  D  L  *  I  F  Q  E  R  S  T  V  V  F  N  *  I  W  M  C  I  F  N  A   : G  V  S  A  R  A  S  T  F  Q  S  L  L  P  I  I  F  R  G  H  F  E  F  D  S  S  C  R  S  S  :  V  Y  F  P  L  *  Y  I  A  S  *  T  Y  S  R  N  K  S  G  C  S  L  *  T  G  *  Y  P  *  S  *  S  S  R  R  T  I  E  Q  T  G  G  I  I  G  W  A  T  S  N  A  G  Q  N  S  S  R  C  T  *  A  I  N  F  S  F  S  H  L  Y  P  *  *   : D  C  K  L  P  S  F  R  G  G  S  G  L  P  *  K  V  G  A  I  C  F  S  R  T  G  F  T  I   : Y  *  T  K  S  R  C  F  R  N  L  V  S  S  T  G  E  N  H  I  M  S  I  K  T  V  L  F  S  R  N  S  C  F  Y  W  I  G  S   : G  S  C  R  V  L  L  V  I  H  S   : K  S  *  Q  T  Y  W  Q  K  I  V  I  N  G  C  T  T  F  P  N  K  A  S  T  H  P  E  G  A   : D  C  P  I  R  H  R  I  F  S  H  A  *  G  T  *  F  F  T  F  A   : G  A  S  E  A  D  S  K  G  S  G  I  N  L  *  L  V  E  I  N  F  I  S  *  N  F  I  S  T  S  F  G  K  S  N  *  R  Q  E   : G  I  G  E  K  P  E  N  Y  L  R  G  V  H  Y  V  S  D  *  V  S  C  G  T  I  A  F  F  C  D  K   : G  Y  G  C  *  S  C  I  I  *  *  S  K  S  K  T  G  V  W  D  C  K  A  T  Q  G  S  C  F  C  F  T  R  K  D  C  R  A  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0008K08.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="34147" stop="34248"/>
                    <exon start="34346" stop="34447"/>
                    <exon start="34600" stop="34704"/>
                    <exon start="34882" stop="34974"/>
                    <exon start="35497" stop="35585"/>
                    <exon start="38421" stop="38640"/>
                    <exon start="39978" stop="40064"/>
                    <exon start="40712" stop="40828"/>
                    <exon start="40915" stop="40947"/>
                    <exon start="41081" stop="41167"/>
                    <exon start="41245" stop="41307"/>
                    <exon start="42399" stop="42515"/>
                    <exon start="46025" stop="46117"/>
                    <exon start="47894" stop="48010"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1425</number_coding_nucleotides>
                  <number_encoded_amino_acids>475</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FSLSVFSMSSCNQSRALGMIRSHVLSVLRSTSSQVQAAIRSSGGSKTSFAEGIESSIIYVRFKAAANELKPILEEIESRTPRKEYIQLLEECHKLYCEQRLSLIRGIVQQRISEFSRKEALSSLTRSGCAYLMQVCQLEHQLFNHFFPSSSEDISSLTPLVDPLCTFLYDTLRPKLIHETNLDVLCELVDILKVEVLGEQLSRRGESLAGLRPTLDRILADVHERLTFRSRTYIRDEIANYLPSEEDLDYPKKLEQSVSAELDSPSTELNQDVSGTWYPPLEKTISCLSKLYCSLETAVFTGLAQEAVEFCSLSIQKASKLIGKRSSSMDAQLFLIKHLLILREQIAPFDIEFSVTHKELDFSHLLEHLRRILRGQASIFDWSRSTSLARTLSPRVLESQIDAKKELEKSLKTTCEEFIMSVTKLVVEPLLSFVTKVTAVKVALSSSQNQKLESGIAKPLKDHAFASPEKIAELL</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="60019" PGL_stop="60843"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="60019" e_stop="60371"/>
            <exon e_start="60616" e_stop="60843"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.906" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="60019" e_stop="60371" e_length="353"/>
          </exon>
          <intron i_serial="1" don_prob="0.906" acc_prob="0.998">
            <gDNA_intron_boundary i_start="60372" i_stop="60615" i_length="244"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="60616" e_stop="60843" e_length="228"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="60019" stop="60371"/>
              <exon start="60616" stop="60843"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E202259" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTAGATGCTAATCTTTTCTTCTAAGTGAAGTTGTGATGATGCAGTGAAAGGCATTGAAAGTGAGTTGCTTTGTGAGGCCATTAGACCATTTCAGGCACTAAATCACCTATGGCAGAGCTAAAGGCACACCTAAGTTTTTTTTTCTGAAATGAACACAACGTGGAAGGCTCTATTGTAACAACATACCCAGTGTAATCACAAAAAGTGGGGTTTGGGCAGGGATAGAGTATATGCAGACGTTACCCCTACCTTGGAGGTAAAGAGGTAGTTTCAATAGACCTTCGGTTCGAGGAAAAACAATTCAAAGCAGTTCGGATGGAAGGTGCTTTATGCATCTAGCAATTGTATACTCG : GGACAAGGGCTAATAGTGGTTCAAAGCCTCTTCACTGGACTTCCTGTCTCAAAATTGCAGAGGATGTGGCAACTGGATTGCTTCATATCCATCAGAACCCTGGTCTGACTCATGGAAACTTGAAATCATCAAATGTACTCTTGGGGGCCGATTTTGAGTCGTGTCTTACAGATTATGGCCTCATGCCATTTAGGAATCTAGATTCTCCTGAGGAATCAGGTGCTTCTT</gDNA_template>
            <first_frame> L  D  A  N  L  F  F  *  V  K  L  *  *  C  S  E  R  H  *  K  *  V  A  L  *  G  H  *  T  I  S  G  T  K  S  P  M  A  E  L  K  A  H  L  S  F  F  F  *  N  E  H  N  V  E  G  S  I  V  T  T  Y  P  V  *  S  Q  K  V  G  F  G  Q  G  *  S  I  C  R  R  Y  P  Y  L  G  G  K  E  V  V  S  I  D  L  R  F  E  E  K  Q  F  K  A  V  R  M  E  G  A  L  C  I  *  Q  L  Y  T  R :   D  K  G  *  *  W  F  K  A  S  S  L  D  F  L  S  Q  N  C  R  G  C  G  N  W  I  A  S  Y  P  S  E  P  W  S  D  S  W  K  L  E  I  I  K  C  T  L  G  G  R  F  *  V  V  S  Y  R  L  W  P  H  A  I  *  E  S  R  F  S  *  G  I  R  C  F   </first_frame>
            <second_frame>  *  M  L  I  F  S  S  K  *  S  C  D  D  A  V  K  G  I  E  S  E  L  L  C  E  A  I  R  P  F  Q  A  L  N  H  L  W  Q  S  *  R  H  T  *  V  F  F  S  E  M  N  T  T  W  K  A  L  L  *  Q  H  T  Q  C  N  H  K  K  W  G  L  G  R  D  R  V  Y  A  D  V  T  P  T  L  E  V  K  R  *  F  Q  *  T  F  G  S  R  K  N  N  S  K  Q  F  G  W  K  V  L  Y  A  S  S  N  C  I  L   : G  T  R  A  N  S  G  S  K  P  L  H  W  T  S  C  L  K  I  A  E  D  V  A  T  G  L  L  H  I  H  Q  N  P  G  L  T  H  G  N  L  K  S  S  N  V  L  L  G  A  D  F  E  S  C  L  T  D  Y  G  L  M  P  F  R  N  L  D  S  P  E  E  S  G  A  S  </second_frame>
            <third_frame>   R  C  *  S  F  L  L  S  E  V  V  M  M  Q  *  K  A  L  K  V  S  C  F  V  R  P  L  D  H  F  R  H  *  I  T  Y  G  R  A  K  G  T  P  K  F  F  F  L  K  *  T  Q  R  G  R  L  Y  C  N  N  I  P  S  V  I  T  K  S  G  V  W  A  G  I  E  Y  M  Q  T  L  P  L  P  W  R  *  R  G  S  F  N  R  P  S  V  R  G  K  T  I  Q  S  S  S  D  G  R  C  F  M  H  L  A  I  V  Y  S  :  G  Q  G  L  I  V  V  Q  S  L  F  T  G  L  P  V  S  K  L  Q  R  M  W  Q  L  D  C  F  I  S  I  R  T  L  V  *  L  M  E  T  *  N  H  Q  M  Y  S  W  G  P  I  L  S  R  V  L  Q  I  M  A  S  C  H  L  G  I  *  I  L  L  R  N  Q  V  L  L </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0008K08.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="60296" stop="60371"/>
                    <exon start="60616" stop="60842"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TFGSRKNNSKQFGWKVLYASSNCILGTRANSGSKPLHWTSCLKIAEDVATGLLHIHQNPGLTHGNLKSSNVLLGADFESCLTDYGLMPFRNLDSPEESGAS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="64367" PGL_stop="70328"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64367" e_stop="64529"/>
            <exon e_start="64664" e_stop="64740"/>
            <exon e_start="65339" e_stop="65439"/>
            <exon e_start="68047" e_stop="68117"/>
            <exon e_start="69405" e_stop="69467"/>
            <exon e_start="69796" e_stop="69840"/>
            <exon e_start="69988" e_stop="70328"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.997" acc_prob="1.000" e_score="0.951"/>
          <exon-intron don_prob="0.435" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.951" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="0.927" acc_prob="0.988" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.912" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="64367" e_stop="64529" e_length="163"/>
          </exon>
          <intron i_serial="1" don_prob="0.997" acc_prob="1.000">
            <gDNA_intron_boundary i_start="64530" i_stop="64663" i_length="134"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64664" e_stop="64740" e_length="77"/>
          </exon>
          <intron i_serial="2" don_prob="0.435" acc_prob="0.995">
            <gDNA_intron_boundary i_start="64741" i_stop="65338" i_length="598"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65339" e_stop="65439" e_length="101"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.951">
            <gDNA_intron_boundary i_start="65440" i_stop="68046" i_length="2607"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="68047" e_stop="68117" e_length="71"/>
          </exon>
          <intron i_serial="4" don_prob="0.985" acc_prob="0.990">
            <gDNA_intron_boundary i_start="68118" i_stop="69404" i_length="1287"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="69405" e_stop="69467" e_length="63"/>
          </exon>
          <intron i_serial="5" don_prob="0.927" acc_prob="0.988">
            <gDNA_intron_boundary i_start="69468" i_stop="69795" i_length="328"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="69796" e_stop="69840" e_length="45"/>
          </exon>
          <intron i_serial="6" don_prob="0.999" acc_prob="0.912">
            <gDNA_intron_boundary i_start="69841" i_stop="69987" i_length="147"/>
          </intron>
          <exon e_serial="7" e_score="0.988">
            <gDNA_exon_boundary e_start="69988" e_stop="70328" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64367" stop="64529"/>
              <exon start="64664" stop="64740"/>
              <exon start="65339" stop="65439"/>
              <exon start="68047" stop="68117"/>
              <exon start="69405" stop="69467"/>
              <exon start="69796" stop="69840"/>
              <exon start="69988" stop="70328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E729946" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCCACTATGAAGATCTGATTCAAAGTTTTTTTCTTCTTCTTCATTTGAGAAAGTATAGTAAGAATCTTAGAGATAAAAAGAAAATTGAGGAAAAAAACGAAAGAGAAATATGTCAATGGCTGCTTTTATTAAGCTGGAGGATTCTCCTATGTTTCAGAAACAA : GTGAGGGGTCTTGAACAGACTACAGATGACCTTAGAGATCGATGTCAAAAGCTGTATAAAGGATGTAAGAAGTATAT : GGAAGTTCTTGGAGAAACACAGAATGGAGACATCATGTTTGCCGAATCATTAGAGGCATTTGGTGGTGGTCTGGACGACCCTCTCAGTGTGTCCCTTGGAG : GTCCAATCATAATGAAGTTTATCTCTGCATTGCGTGAGCTTGCTACATACAAGGAACTTATCCGTTCCCAA : GTAGAACATGTGCTGGTGGATCGTGTGTGCCAGTTTTTGTCTGATGATTTGCGGGATGTAAAG : GAATCCCGTCGCAGGTTTGATAAAGCTGCATCCACTTATGACCAG : GCACGTGAAAGGTTTTCTTCTCTGAAGAAGAATGCACGGGATGAAGTTGTTACTGAACTTGAAGAAGTAAGCCCTTTCTCTGAAAAAGGTTATCTTTGTGGATTGTTCATCCTCTTATGTGTATCTCTCTATCTGCCTAACTTGATGAGGTGTAACCTAACACAAACTGATAAATGTTGCAAAAATTACCAACCAAAAGTGATTGGTATCCTGATTGTTATGTGTTCAAATAAAATTATGTCCTAAAGAATCTCAAAATTTTGGTCTGCTTTAGGTCTTTTCTTATAGGATCCCTCTGAGGAATCATTTACATGCTTGTTTTCCTTGAGGAAAAAAAATGA</gDNA_template>
            <first_frame> A  T  M  K  I  *  F  K  V  F  F  F  F  F  I  *  E  S  I  V  R  I  L  E  I  K  R  K  L  R  K  K  T  K  E  K  Y  V  N  G  C  F  Y  *  A  G  G  F  S  Y  V  S  E  T   : S  E  G  S  *  T  D  Y  R  *  P  *  R  S  M  S  K  A  V  *  R  M  *  E  V  Y  :  G  S  S  W  R  N  T  E  W  R  H  H  V  C  R  I  I  R  G  I  W  W  W  S  G  R  P  S  Q  C  V  P  W  R :   S  N  H  N  E  V  Y  L  C  I  A  *  A  C  Y  I  Q  G  T  Y  P  F  P   : S  R  T  C  A  G  G  S  C  V  P  V  F  V  *  *  F  A  G  C  K   : G  I  P  S  Q  V  *  *  S  C  I  H  L  *  P   : G  T  *  K  V  F  F  S  E  E  E  C  T  G  *  S  C  Y  *  T  *  R  S  K  P  F  L  *  K  R  L  S  L  W  I  V  H  P  L  M  C  I  S  L  S  A  *  L  D  E  V  *  P  N  T  N  *  *  M  L  Q  K  L  P  T  K  S  D  W  Y  P  D  C  Y  V  F  K  *  N  Y  V  L  K  N  L  K  I  L  V  C  F  R  S  F  L  I  G  S  L  *  G  I  I  Y  M  L  V  F  L  E  E  K  K  * </first_frame>
            <second_frame>  P  L  *  R  S  D  S  K  F  F  S  S  S  S  F  E  K  V  *  *  E  S  *  R  *  K  E  N  *  G  K  K  R  K  R  N  M  S  M  A  A  F  I  K  L  E  D  S  P  M  F  Q  K  Q  :  V  R  G  L  E  Q  T  T  D  D  L  R  D  R  C  Q  K  L  Y  K  G  C  K  K  Y  M :   E  V  L  G  E  T  Q  N  G  D  I  M  F  A  E  S  L  E  A  F  G  G  G  L  D  D  P  L  S  V  S  L  G   : G  P  I  I  M  K  F  I  S  A  L  R  E  L  A  T  Y  K  E  L  I  R  S  Q  :  V  E  H  V  L  V  D  R  V  C  Q  F  L  S  D  D  L  R  D  V  K  :  E  S  R  R  R  F  D  K  A  A  S  T  Y  D  Q  :  A  R  E  R  F  S  S  L  K  K  N  A  R  D  E  V  V  T  E  L  E  E  V  S  P  F  S  E  K  G  Y  L  C  G  L  F  I  L  L  C  V  S  L  Y  L  P  N  L  M  R  C  N  L  T  Q  T  D  K  C  C  K  N  Y  Q  P  K  V  I  G  I  L  I  V  M  C  S  N  K  I  M  S  *  R  I  S  K  F  W  S  A  L  G  L  F  L  *  D  P  S  E  E  S  F  T  C  L  F  S  L  R  K  K  N   </second_frame>
            <third_frame>   H  Y  E  D  L  I  Q  S  F  F  L  L  L  H  L  R  K  Y  S  K  N  L  R  D  K  K  K  I  E  E  K  N  E  R  E  I  C  Q  W  L  L  L  L  S  W  R  I  L  L  C  F  R  N  K :   *  G  V  L  N  R  L  Q  M  T  L  E  I  D  V  K  S  C  I  K  D  V  R  S  I   : W  K  F  L  E  K  H  R  M  E  T  S  C  L  P  N  H  *  R  H  L  V  V  V  W  T  T  L  S  V  C  P  L  E  :  V  Q  S  *  *  S  L  S  L  H  C  V  S  L  L  H  T  R  N  L  S  V  P  K :   *  N  M  C  W  W  I  V  C  A  S  F  C  L  M  I  C  G  M  *  R :   N  P  V  A  G  L  I  K  L  H  P  L  M  T  R :   H  V  K  G  F  L  L  *  R  R  M  H  G  M  K  L  L  L  N  L  K  K  *  A  L  S  L  K  K  V  I  F  V  D  C  S  S  S  Y  V  Y  L  S  I  C  L  T  *  *  G  V  T  *  H  K  L  I  N  V  A  K  I  T  N  Q  K  *  L  V  S  *  L  L  C  V  Q  I  K  L  C  P  K  E  S  Q  N  F  G  L  L  *  V  F  S  Y  R  I  P  L  R  N  H  L  H  A  C  F  P  *  G  K  K  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0008K08.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64455" stop="64529"/>
                    <exon start="64664" stop="64740"/>
                    <exon start="65339" stop="65439"/>
                    <exon start="68047" stop="68117"/>
                    <exon start="69405" stop="69467"/>
                    <exon start="69796" stop="69840"/>
                    <exon start="69988" stop="70233"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>675</number_coding_nucleotides>
                  <number_encoded_amino_acids>225</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKKRKRNMSMAAFIKLEDSPMFQKQVRGLEQTTDDLRDRCQKLYKGCKKYMEVLGETQNGDIMFAESLEAFGGGLDDPLSVSLGGPIIMKFISALRELATYKELIRSQVEHVLVDRVCQFLSDDLRDVKESRRRFDKAASTYDQARERFSSLKKNARDEVVTELEEVSPFSEKGYLCGLFILLCVSLYLPNLMRCNLTQTDKCCKNYQPKVIGILIVMCSNKIMS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="70585" PGL_stop="75021"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="70585" e_stop="71066"/>
            <exon e_start="71151" e_stop="71254"/>
            <exon e_start="71336" e_stop="71377"/>
            <exon e_start="74961" e_stop="75021"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.625" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.985" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="0.976"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="70585" e_stop="71066" e_length="482"/>
          </exon>
          <intron i_serial="1" don_prob="0.625" acc_prob="0.000">
            <gDNA_intron_boundary i_start="71067" i_stop="71150" i_length="84"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="71151" e_stop="71254" e_length="104"/>
          </exon>
          <intron i_serial="2" don_prob="0.985" acc_prob="0.999">
            <gDNA_intron_boundary i_start="71255" i_stop="71335" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="0.976">
            <gDNA_exon_boundary e_start="71336" e_stop="71377" e_length="42"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="71378" i_stop="74960" i_length="3583"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="74961" e_stop="75021" e_length="61"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="70585" stop="71066"/>
              <exon start="71151" stop="71254"/>
              <exon start="71336" stop="71377"/>
              <exon start="74961" stop="75021"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341998" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAAAAAAAAAAAAGAAGAAACTCAGCCTCATGCTTTTGGTAAACACATCTTCCCCTCTTCTTTTGCGTGTGTGTGTTTTCTGGTTGTTGTAAAATGACCTTCACAAAAGAAAGAATGTTGATACATCTTCGGGTGAAGCTCGCCGAGGCCACCTTATTGGTAGAGGCTTTTTCCCGAAGCATATCTCAGAGCTTTTACATAAATAGACATTGCTCCCAAGTCCAGGGAACAAATTGTGATGAATTAATGTTGAAGGTTTCACTTATATCTCGTTCTGTTTTGATGCTAACAATGTCCTATTCAGGTTTTTATGAAGTATGTCCAGCCTTCTGTATCCCTCTGTTTTATATTAGTGCTTATCTGTCAAGGAAAACATTTGAAGTAATTAGGAGTCAAAACTGGGAATTGGAGTTTTACAGCTTTTTCTGTGACAGGAGCTTCATAACTCAAAGTCCACTTTTGAGAGAAGCCGTTTCAATCTT : GATTTCAGGTAAATGCTATCACAAATGTTGATGCCAAAAAGAAGTACGAGTTCTTAGAATCCTTTAGTGCTATTATGGATGCACATCTGAGATACTTCAAGCTG : GGTCATGACTTATTGAGCCAGATGGAGCCGTTCATCCATCAG : GTTTTGACATATGCCCAGCAGTCGAAAGAACAGGCCAGCATAGAACAAGATAAACTTGCCA</gDNA_template>
            <first_frame> *  K  K  K  R  R  N  S  A  S  C  F  W  *  T  H  L  P  L  F  F  C  V  C  V  F  S  G  C  C  K  M  T  F  T  K  E  R  M  L  I  H  L  R  V  K  L  A  E  A  T  L  L  V  E  A  F  S  R  S  I  S  Q  S  F  Y  I  N  R  H  C  S  Q  V  Q  G  T  N  C  D  E  L  M  L  K  V  S  L  I  S  R  S  V  L  M  L  T  M  S  Y  S  G  F  Y  E  V  C  P  A  F  C  I  P  L  F  Y  I  S  A  Y  L  S  R  K  T  F  E  V  I  R  S  Q  N  W  E  L  E  F  Y  S  F  F  C  D  R  S  F  I  T  Q  S  P  L  L  R  E  A  V  S  I  L :   I  S  G  K  C  Y  H  K  C  *  C  Q  K  E  V  R  V  L  R  I  L  *  C  Y  Y  G  C  T  S  E  I  L  Q  A   : G  S  *  L  I  E  P  D  G  A  V  H  P  S   : G  F  D  I  C  P  A  V  E  R  T  G  Q  H  R  T  R  *  T  C   </first_frame>
            <second_frame>  K  K  K  K  E  E  T  Q  P  H  A  F  G  K  H  I  F  P  S  S  F  A  C  V  C  F  L  V  V  V  K  *  P  S  Q  K  K  E  C  *  Y  I  F  G  *  S  S  P  R  P  P  Y  W  *  R  L  F  P  E  A  Y  L  R  A  F  T  *  I  D  I  A  P  K  S  R  E  Q  I  V  M  N  *  C  *  R  F  H  L  Y  L  V  L  F  *  C  *  Q  C  P  I  Q  V  F  M  K  Y  V  Q  P  S  V  S  L  C  F  I  L  V  L  I  C  Q  G  K  H  L  K  *  L  G  V  K  T  G  N  W  S  F  T  A  F  S  V  T  G  A  S  *  L  K  V  H  F  *  E  K  P  F  Q  S   : *  F  Q  V  N  A  I  T  N  V  D  A  K  K  K  Y  E  F  L  E  S  F  S  A  I  M  D  A  H  L  R  Y  F  K  L  :  G  H  D  L  L  S  Q  M  E  P  F  I  H  Q  :  V  L  T  Y  A  Q  Q  S  K  E  Q  A  S  I  E  Q  D  K  L  A  </second_frame>
            <third_frame>   K  K  K  K  K  K  L  S  L  M  L  L  V  N  T  S  S  P  L  L  L  R  V  C  V  F  W  L  L  *  N  D  L  H  K  R  K  N  V  D  T  S  S  G  E  A  R  R  G  H  L  I  G  R  G  F  F  P  K  H  I  S  E  L  L  H  K  *  T  L  L  P  S  P  G  N  K  L  *  *  I  N  V  E  G  F  T  Y  I  S  F  C  F  D  A  N  N  V  L  F  R  F  L  *  S  M  S  S  L  L  Y  P  S  V  L  Y  *  C  L  S  V  K  E  N  I  *  S  N  *  E  S  K  L  G  I  G  V  L  Q  L  F  L  *  Q  E  L  H  N  S  K  S  T  F  E  R  S  R  F  N  L  :  D  F  R  *  M  L  S  Q  M  L  M  P  K  R  S  T  S  S  *  N  P  L  V  L  L  W  M  H  I  *  D  T  S  S  W :   V  M  T  Y  *  A  R  W  S  R  S  S  I  R :   F  *  H  M  P  S  S  R  K  N  R  P  A  *  N  K  I  N  L  P </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0008K08.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70627" stop="71066"/>
                    <exon start="71151" stop="71181"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>468</number_coding_nucleotides>
                  <number_encoded_amino_acids>156</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THLPLFFCVCVFSGCCKMTFTKERMLIHLRVKLAEATLLVEAFSRSISQSFYINRHCSQVQGTNCDELMLKVSLISRSVLMLTMSYSGFYEVCPAFCIPLFYISAYLSRKTFEVIRSQNWELEFYSFFCDRSFITQSPLLREAVSILISGKCYHKC*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0008K08.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="71153" stop="71254"/>
                    <exon start="71336" stop="71377"/>
                    <exon start="74961" stop="75020"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FQVNAITNVDAKKKYEFLESFSAIMDAHLRYFKLGHDLLSQMEPFIHQVLTYAQQSKEQASIEQDKLA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="+" PGL_start="89050" PGL_stop="89470"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="89050" e_stop="89470"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="89050" e_stop="89470" e_length="421"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89050" stop="89470"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243215" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTATTGTAGATGATCAATTTTTTTCTTCGAATTCGAAATTAAATTACAATACACACACAGAAAAATAGTTTAATTTTTTATTCTTTAAACTAAGGAATGAAAGAAAAAAACAAAATAAGAATAAGAAATTCAAATAATTATAATAAAAGAAGTCAAAAAATAATTTATGTATGAAAAAAATTAAAATATACCTTGAACTTTGATAGAAGAATCATATATATCCTAAATAATTTTTAAAAAAAAATTAGAAGTAATAAATATAAATTTAAAATTAATTTTTTAAAATCCGTTAAATGAAGGGTATATGTGAGTCATTTTGTAACGGCAGGGGTATATGTGAGTCGTTTGTATAACGGTAAGGGCATATATGAGCCACTTTTATAACGAGGGGCATATCAGCTCCAAATGACAAAGTTGAGGG</gDNA_template>
            <first_frame> L  L  *  M  I  N  F  F  L  R  I  R  N  *  I  T  I  H  T  Q  K  N  S  L  I  F  Y  S  L  N  *  G  M  K  E  K  N  K  I  R  I  R  N  S  N  N  Y  N  K  R  S  Q  K  I  I  Y  V  *  K  K  L  K  Y  T  L  N  F  D  R  R  I  I  Y  I  L  N  N  F  *  K  K  I  R  S  N  K  Y  K  F  K  I  N  F  L  K  S  V  K  *  R  V  Y  V  S  H  F  V  T  A  G  V  Y  V  S  R  L  Y  N  G  K  G  I  Y  E  P  L  L  *  R  G  A  Y  Q  L  Q  M  T  K  L  R  </first_frame>
            <second_frame>  Y  C  R  *  S  I  F  F  F  E  F  E  I  K  L  Q  Y  T  H  R  K  I  V  *  F  F  I  L  *  T  K  E  *  K  K  K  T  K  *  E  *  E  I  Q  I  I  I  I  K  E  V  K  K  *  F  M  Y  E  K  N  *  N  I  P  *  T  L  I  E  E  S  Y  I  S  *  I  I  F  K  K  K  L  E  V  I  N  I  N  L  K  L  I  F  *  N  P  L  N  E  G  Y  M  *  V  I  L  *  R  Q  G  Y  M  *  V  V  C  I  T  V  R  A  Y  M  S  H  F  Y  N  E  G  H  I  S  S  K  *  Q  S  *  G </second_frame>
            <third_frame>   I  V  D  D  Q  F  F  S  S  N  S  K  L  N  Y  N  T  H  T  E  K  *  F  N  F  L  F  F  K  L  R  N  E  R  K  K  Q  N  K  N  K  K  F  K  *  L  *  *  K  K  S  K  N  N  L  C  M  K  K  I  K  I  Y  L  E  L  *  *  K  N  H  I  Y  P  K  *  F  L  K  K  N  *  K  *  *  I  *  I  *  N  *  F  F  K  I  R  *  M  K  G  I  C  E  S  F  C  N  G  R  G  I  C  E  S  F  V  *  R  *  G  H  I  *  A  T  F  I  T  R  G  I  S  A  P  N  D  K  V  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0008K08.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 31 chains have been computed
$ 
$ memory statistics:
$ 38272 bytes spliced alignments in total
$ 18 spliced alignments have been stored
$ 2126 bytes was the average size of a spliced alignment
$ 18048 bytes predicted gene locations in total
$ 10 predicted gene locations have been stored
$ 1804 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 36 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 13:41:32
-->
