<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 05:31:42"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355114" ref_strand="+" ref_description="SGN-E355114 [cTOS-18-B12]">
      <seq>ttaggttcgttggtctcatcacacaagaacaggtctagtagagtctttaggaacggtagggggacgcctttacttttctttgagaggctataagactttaggaaaatttcaccctttcattctttctttcgtgctactacttgagtccaattggtatctaggcgatacaaattggtatctgaccatcttcactctcttttgcagatggttagaactagagcaacgaccacgtcaacaccaacaccggccagacaagaaacaactgagccagccactggggctgtgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="21559" stop="22443"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="21859" g_stop="22143" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="286" r_length="286" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E355114" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>285</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E355114" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="21859" e_stop="22143"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTTCGTTGGTCTCATCACACAAGAAC-GGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCGGCCAGACAAGAAACAATTGAGCCAGCCACTGGGGCTGTGG</genome_strand>
        <mrna_strand>TTAGGTTCGTTGGTCTCATCACACAAGAACAGGTCTAGTAGAGTCTTTAGGAACGGTAGGGGGACGCCTTTACTTTTCTTTGAGAGGCTATAAGACTTTAGGAAAATTTCACCCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACAAATTGGTATCTGACCATCTTCACTCTCTTTTGCAGATGGTTAGAACTAGAGCAACGACCACGTCAACACCAACACCGGCCAGACAAGAAACAACTGAGCCAGCCACTGGGGCTGTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352180" ref_strand="+" ref_description="SGN-E352180 [cTOS-13-I20]">
      <seq>cccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattataggcccagtagtcaaacgtggaaatgtacctatgtgcaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataaaccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgttcagtttccccatcctccccttctcttattacttcctcagtcggtggaggagtcaccgccctagtaccagatgggctcggttctcgttctcttcctctagatgacgtcctcccacgacctctaccacggccccttgccgctgttctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="22882" stop="21850"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22582" g_stop="22150" g_length="433"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="433" r_length="433" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E352180" ref_strand="+">
        <total_alignment_score>0.954</total_alignment_score>
        <cumulative_length_of_scored_exons>433</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352180" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22582" e_stop="22150"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTAAAAAGTTCGTGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGTGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCAGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCGTTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGGGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTTC</genome_strand>
        <mrna_strand>CCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGCCCAGTAGTCAAACGTGGAAATGTACCTATGTGCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAAACCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGAGGAGTCACCGCCCTAGTACCAGATGGGCTCGGTTCTCGTTCTCTTCCTCTAGATGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356614" ref_strand="+" ref_description="SGN-E356614 [cTOS-21-N3]">
      <seq>gcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtggcatttcctcattttgcacttgntcagtttccccatccctccctttctctattacttcctcagtcagtggaagagtcactgccctagtatcagatgggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="23240" stop="21921"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22940" g_stop="22221" g_length="720"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="720" r_length="720" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E356614" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>720</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22940" e_stop="22221"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCGAATCTGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACAGAACTTAGCCTCATAAGCATTAACTGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAATCTAGAGAACGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCATAAGCATCCTCTGATTCAGCGCCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTAAAAAGTTCGTGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGTGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCAGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCGTTTCCTCATTTTGCACTTGTTCAGTTTCCCCAT-CCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGGGGAGTCACTGCCCTAGTATCAGATGGGCT</genome_strand>
        <mrna_strand>GCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCATTTCCTCATTTTGCACTTGNTCAGTTTCCCCATCCCTCCCTTTCTC-TATTACTTCCTCAGTCAGTGGAAGAGTCACTGCCCTAGTATCAGATGGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352401" ref_strand="+" ref_description="SGN-E352401 [cTOS-9-N1]">
      <seq>aatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaactgacaccctaccttgctctaggctcaagaactcatcccttttcttatccctcaaagtccgggggatatacttctccataaacaaactatagaatgaggcccaagtcataggtgatgcctctattggttgacactcgatatgtgaccgccaccacatttgggcgttcccttgaaactgataagtcacaaactccacaccaaaccgttctactatacccatcttgtgtagtagctcgtgacagtcaaccagaaaatcataagcatcctccgattcagcacccttgaagaccggaggtttcaatttcaagaacttactgaaaagttcatgctgatcatttgtcattatagggacagtagtcaaacgtggaaatgtgcctatgtccaatggaacatccatgcggggagccatagtagccgcatgttgtacttctgaaaccggaggtgttggcgcagaaaacactggaggtgcttgaccttgatcagataacccgctaagataagccagaacctgattgatcatctctggggtaggttggggtgccatttccctcatttgcacttgttcagtttccccatcctccccttct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="23237" stop="21974"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22937" g_stop="22274" g_length="664"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="664" r_length="664" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E352401" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>664</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352401" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="22937" e_stop="22274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATCTGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACAGAACTTAGCCTCATAAGCATTAACTGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAATCTAGAGAACGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCATAAGCATCCTCTGATTCAGCGCCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTAAAAAGTTCGTGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGTGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCAGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCGTTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</genome_strand>
        <mrna_strand>AATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACTGACACCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCTTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAAACTATAGAATGAGGCCCAAGTCATAGGTGATGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTGGGCGTTCCCTTGAAACTGATAAGTCACAAACTCCACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCGTGACAGTCAACCAGAAAATCATAAGCATCCTCCGATTCAGCACCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTGAAAAGTTCATGCTGATCATTTGTCATTATAGGGACAGTAGTCAAACGTGGAAATGTGCCTATGTCCAATGGAACATCCATGCGGGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCGGAGGTGTTGGCGCAGAAAACACTGGAGGTGCTTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGCCATTTCCCTCATTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356912" ref_strand="+" ref_description="SGN-E356912 [cTOS-22-F17]">
      <seq>caggatcaaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctagagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaaggccgaaatccgcaattctgacctcaaccccttcacaaaccggagaatccgctcttgaggactgaaacagagttgagtggcatatccggatagtgcacggaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaggaactcatctcttttcctatccctcaaagtccgggggatatactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="23876" stop="22488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23576" g_stop="22788" g_length="789"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="790" r_length="790" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E356912" ref_strand="+">
        <total_alignment_score>0.948</total_alignment_score>
        <cumulative_length_of_scored_exons>789</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23576" e_stop="22788"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTACCACGACCACCATGT-CTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAATCCTAGGCCCCTCGGAGAAGTGCTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTATAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCTTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGGTGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCTGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACAGAACTTAGCCTCATAAGCATTAACTGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</genome_strand>
        <mrna_strand>CAGGATCAAACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGAGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCCGGATAGTGCACGGAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCTCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E356209" ref_strand="+" ref_description="SGN-E356209 [cTOS-20-H15]">
      <seq>ttcagaccgcccagggaaagcgtaacaatgggccctatcgttcgtctgtccgttgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccattttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataactttgtctgggacaatttttcctaatatgtccaatctccccacatccataacattctctggagtcaagcataggcccctcggagaagtgttaaccggtctgaggtggtctcccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagaaccattaaactcacctcccttccgaaacctttttgatgtcgatgttgtggtgaagtcgtctggcttcactccttccacttctatcacaaagtctaccacttcttggaaggattttgccgttgccgctatctgtaaggacgaaatccgcaattctgacctcaaccccttcacaaaccggcgaatccgctcttgaggactgaaacagagttgagtggcatatctggatagtgcacgaaacttagcctcataagcattaaccgacatcctaccttgctctaggctcaagaactcatcccttttcctatccctcaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="23800" stop="22504"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23500" g_stop="22804" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="698" r_length="698" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E356209" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E356209" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23500" e_stop="22804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTACCACGACCACCATGT-CTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAATCCTAGGCCCCTCGGAGAAGTGCTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTATAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCTTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGGTGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCTGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACAGAACTTAGCCTCATAAGCATTAACTGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCCCTTTTCCTATCCCTCAAAG</genome_strand>
        <mrna_strand>TTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTCGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCATTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAAGCATAGGCCCCTCGGAGAAGTGTTAACCGGTCTGAGGTGGTCTCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTCCGAAACCTTTTTGATGTCGATGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGACGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCCGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACGAAACTTAGCCTCATAAGCATTAACCGACATCCTACCTTGCTCTAGGCTCAAGAACTCATCCCTTTTCCTATCCCTCAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353359" ref_strand="-" ref_description="SGN-E353359 [cTOS-15-G18]">
      <seq>gcaaggtaggatgtaggtcaatgcatatgaggctaagtttcgtgcactatccagatatgccactcaactttgtttcagtccacaagagaggattcgtcgttttgtgaaagggttgaggtcagagttgcggatttcagcgttacaggtagcggctacggcaaaatccttgcaagaaatggttgacttcgatgtaattctgggtatgacttggctttctccaaattttgcaatcttggattgtaatgctaaaaccgtgacgttagccaagcctgggacagatctgttagtgtaggagggtgactacacttccaatccggtgcgtatcatctcctttcttcgtgctaagaaaatggttagtaaagggtgtttagctttcttggcacatctcaaggataacactacccaagtaccttcgattgactcagtttcagtagttcgtgagtttatggatgtgttccctgcagatcatcctggtatgccaccggatagggatattgacttctgtattgatctcgaaccgggcacacgccccatttttatacccccttatagaatggctcccgcagagttaagagagttaaaggcacaacttcaagagttattgaacaaaggcttcattagaccaagtgcatctccttggggtgctccggttttgttgtaaagatcggcagtttttgaatgtgcatagactaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="22544" stop="24587"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="22844" g_stop="23016" g_length="173"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="173" r_length="173" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="23017" i_stop="23759" i_length="743">
            <donor d_prob="0.000" d_score="0.88"/>
            <acceptor a_prob="0.171" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="23760" g_stop="24287" g_length="528"/>
          <reference_exon_boundary r_type="cDNA" r_start="174" r_stop="694" r_length="521" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E353359" ref_strand="-">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>701</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E353359" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="22844" e_stop="23016"/>
          <exon e_start="23760" e_stop="24287"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAGGTAGGATGTCAGTTAATGCTTATGAGGCTAAGTTCTGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGCAGATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAGAGGTGGTAGACTTTGTGATAGAAGTGGAAGGAGTGAAGCCAGACGACTTCACCACAACACCGACATCAAAAAGGCTTCGAAAGGGAGGTGAGTTTAATGGTTCTTACACTAGAGGACAAGGTTCGGGAAGTTACTCAGTCCGACCAATTCAGTCTTCACTATAGACTGTAGTTGGGGGACCACCTCAGACCGGTCAGCACTTCTCCGAGGGGCCTAGGATTGACTCCAGAGAATGTTATGGATGTGGGGAGATTGGACATATTAGGAAAAATTGTCCCAGACAAAGTTATAGACCCCCAATAGCTAGAGGTAGAGGTGGTCATGGTAGAGGCCGTTATTCTGGAGACATGGTGGTCGTGGTAATGGTGGTCACCAAAACGGCCGAGGTGATGGGCAAACTGGGGCCACTACATCACAACATGGTAGGGGCAACGGACAGACAAACGATAGGGCCCATTGTTACGCTTTCCCTGGGCGGTCTGAAGCGGAGGCATCTGATGCTGTCATCACAGGTAATCTTCTGGTTTGTGATTGCATGGCTTCTGTATTGTTTGATCCTGGATCCACGTTTTCTTATGTATCTTCCTCATTTGCTAATGGTCTAAATTTACATTGTGAATTACTTGATATGCCTATTCGTGTCTCTACTCCGGTGGGTGAGTCTGTGGTAGTTGAAAAGGTATATAGGTCTTGTTTGGTAAACTTTGTGGGGAGCAACACTTATGTAGATTTGGTTATCTTAGAAATGGATGATTTTGACGTGACTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGACCCGTTAGTGTGGGAGGGTGACTACACTCCCAATCCGGTCCGCATCGTCTCATTTCTTTGTGCTAGGAAAATGATTAGTAAAGGGTGTTTAGCTTTCTTGGCAAATCTCAAGGATGACACTACCCAAGTACCTACGATTGAGTCAGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACA</genome_strand>
        <mrna_strand>GCAAGGTAGGATGTAGGTCAATGCATATGAGGCTAAGTTTCGTGCACTATCCAGATATGCCACTCAACTTTGTTTCAGTCCACAAGAGAGGATTCGTCGTTTTGTGAAAGGGTTGAGGTCAGAGTTGCGGATTTCAGCGTTACAGGTAGCGGCTACGGCAAAATCCTTGCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTTTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACCGTGACGTTAGCCAAGCCTGGGACAGATCTGTTAGTGTAGGAGGGTGACTACACTTCCAATCCGGTGCGTATCATCTCCTTTCTTCGTGCTAAGAAAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACATCTCAAGGATAACACTACCCAAGTACCTTCGATTGACTCAGTTTCAGTAGTTCGTGAGTTTATGGATGTGTTCCCTGCAGATCATCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTCGAACCGGGCACACGCCCCATTTTTATACCCCCTTATAGAATGGCTCCCGCAGAGTTAAGAGAGTTAAAGGCACAACTTCAAGAGTTATTGAACAAAGGCTTCATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTG-TTGT--A-AAG-A--TCGGCAGTTTTTGAATGTGCATAGACTACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214046" ref_strand="+" ref_description="SGN-E214046 [cLEC-80-E17]">
      <seq>acgaataggcatatcaagaaattcacaatgtaaatttagaccattagcaaatgaggaagatacataagaaaacgtggatccaggatcaaacaatacggaagccatgcaatcacaaacaagaagattacctgtgatgacagcatcagatgcctccgctttagaccgcccagggaaagcgtaacaatgggccctatagtttgtttgtccattgcccctaccatgtcgtgatgtagtggccccagtttgtccattacctctgccgttttggtgaccaccattgcctcgaccaccacgtcctccaaaataacggcctctaccatgacaacctctacctctaactattgggggtctataacttggtccgggaaaatttctcctaatatgtccaatctccccacatccataacattctctagagtcactcataggcccctcggagaagtgttgaccggtctgaggtggacccccaactacagtttgtagtgaagactgaatgggtcgaactgagtaacctccagaaccttgtcctctagagtaagaacccttaaactcatctcccctttgaaacctcatcgatgtcgatgtcgtggtgaagtcgtctggtttcactccttccacttctatcaaaaagtctaccacttcttggaaggattttgccgttgccgctacctgtaagggcgaaatccgcaattctgacctcaaccccttcacaaccggcgaatccgctcttgagggactgaacagagttgagtggcatatctgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="23956" stop="22594"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23656" g_stop="22894" g_length="763"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="763" r_length="763" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E214046" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>763</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E214046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23656" e_stop="22894"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTACCACGACCACCATGT-CTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAATCCTAGGCCCCTCGGAGAAGTGCTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTATAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCTTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGGTGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCTGCTCTTGA-GGACTGAAACAGAGTTGAGTGGCATATCTGG</genome_strand>
        <mrna_strand>ACGAATAGGCATATCAAGAAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACGGAAGCCATGCAATCACAAACAAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTTAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATAGTTTGTTTGTCCATTGCCCCTACCATGTCGTGATGTAGTGGCCCCAGTTTGTCCATTACCTCTGCCGTTTTGGTGACCACCATTGCCTCGACCACCACGTCCTCCAAAATAACGGCCTCTACCATGACAACCTCTACCTCTAACTATTGGGGGTCTATAACTTGGTCCGGGAAAATTTCTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTAGAGTCACTCATAGGCCCCTCGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTTTGTAGTGAAGACTGAATGGGTCGAACTGAGTAACCTCCAGAACCTTGTCCTCTAGAGTAAGAACCCTTAAACTCATCTCCCCTTTGAAACCTCATCGATGTCGATGTCGTGGTGAAGTCGTCTGGTTTCACTCCTTCCACTTCTATCAAAAAGTCTACCACTTCTTGGAAGGATTTTGCCGTTGCCGCTACCTGTAAGGGCGAAATCCGCAATTCTGACCTCAACCCCTTCAC-AACCGGCGAATCCGCTCTTGAGGGACTG-AACAGAGTTGAGTGGCATATCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E353805" ref_strand="+" ref_description="SGN-E353805 [cTOS-10-C24]">
      <seq>ggatcaacaatacggaagccatgcaatcacaaactagaagattacctgtgatgacagcatcagatgcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcgtttgtctgcccattgcccctaccatgttgtgatgtagtggccccagtttgcccattacctctgccgttttggtgaccaccattacctcgaccaccacgtcctccagaataacggcctctaccatgaccacctctacctctagctattgggggtctataacttggtccaggacaatttatcctaatatgtccaatctccccacatccataacattctctggagtcactcataggccccttggagaagtgttgaccggtctgaggtggacccccaactacagtctgtagtgaagactgaatgggtcgagccgagtaacctccggaaccttgtcctctaaagtaagaacccttaaactcacctccctttcgaaacctctttgatgttgatgtcgtggtgaagtcgtctggcttcactccttcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="23874" stop="22742"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23574" g_stop="23042" g_length="533"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="533" r_length="533" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E353805" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>533</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E353805" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23574" e_stop="23042"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTACCACGACCACCATGT-CTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAATCCTAGGCCCCTCGGAGAAGTGCTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTATAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCTTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGGTGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</genome_strand>
        <mrna_strand>GGATC-AACAATACGGAAGCCATGCAATCACAAACTAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGCCCATTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATTACCTCTGCCGTTTTGGTGACCACCATTACCTCGACCACCACGTCCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTGGTCCAGGACAATTTATCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCACTCATAGGCCCCTTGGAGAAGTGTTGACCGGTCTGAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATGGGTCGAGCCGAGTAACCTCCGGAACCTTGTCCTCTAAAGTAAGAACCCTTAAACTCACCTCCCTTTCGAAACCTCTTTGATGTTGATGTCGTGGTGAAGTCGTCTGGCTTCACTCCTTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E244046" ref_strand="+" ref_description="SGN-E244046 [cLEE-1-H7]">
      <seq>aaacacgaataggcatatcaagtaattcacaatgtaaagttagaccattagcaaatgaggaagatacataagaaaatgtggatccaggatcaaacaatacagaagccatgcaatcacaaaccaaaagattacctgtgatgacaacatcagattcctccgcttcagaccgcccagggaaagcgtaacaatgggccctatcattcttatgtctgttgcccctaccatgttgtgatgtagtggctccagtttgcccatcacctcggccgttttggtgaccaccatttcctcgaccgccacgtcctccagaataacggactctgccatgaccacctctacctctaacctttggaggtctgtaactctgttttggacaatatctcttaatatgtccaatctccccacacccatagcactctctgggttcatgcataagtctctcagagaagtgttgaccggtcgaaggtggacccccaactacagtctgtagtgaagactgaattggtcggactgagtaacttcccgaaccctgtcctctagtgtaagcaccattaaactcacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="23960" stop="22803"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="23660" g_stop="23103" g_length="558"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="559" r_length="559" r_score="0.910"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E244046" ref_strand="+">
        <total_alignment_score>0.910</total_alignment_score>
        <cumulative_length_of_scored_exons>558</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E244046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="23660" e_stop="23103"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTACCACGACCACCATGT-CTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAATCCTAGGCCCCTCGGAGAAGTGCTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTATAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCTTGTCCTCTAGTGTAAGAACCATTAAACTCACC</genome_strand>
        <mrna_strand>AAACACGAATAGGCATATCAAGTAATTCACAATGTAAAGTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAATGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAAAAGATTACCTGTGATGACAACATCAGATTCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCATTCTTATGTCTGTTGCCCCTACCATGTTGTGATGTAGTGGCTCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTTCCTCGACCGCCACGTCCTCCAGAATAACGGACTCTGCCATGACCACCTCTACCTCTAACCTTTGGAGGTCTGTAACTCTGTTTTGGACAATATCTCTTAATATGTCCAATCTCCCCACACCCATAGCACTCTCTGGGTTCATGCATAAGTCTCTCAGAGAAGTGTTGACCGGTCGAAGGTGGACCCCCAACTACAGTCTGTAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCCTGTCCTCTAGTGTAAGCACCATTAAACTCACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E355244" ref_strand="+" ref_description="SGN-E355244 [cTOS-18-K20]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttagcaaatgaggaagatacantagaaaacgtggatcccaggatcaacaatacagaagccatgcaatcacaatcgaaagattacctgtgatgacagcatctaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="24570" stop="23209"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24270" g_stop="23509" g_length="762"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="761" r_length="761" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E355244" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E355244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24270" e_stop="23509"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACTGACTCAATCGTAGGTACTTGGGTAGTGTCATCCTTGAGATTTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCCTAGCACAAAGAAATGAGACGATGCGGACCGGATTGGGAGTGTAGTCACCCTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAGTCACGTCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAGACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGAT-CCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGAT</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAGCAAATGAGGAAGATACANTAGAAAACGTGGATCCCAGGATC-AACAATACAGAAGCCATGCAATCACAATCGA-AAGATTACCTGTGATGACAGCATCTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351414" ref_strand="+" ref_description="SGN-E351414 [cTOS-12-D7]">
      <seq>cggaaactcccatccttcttcttcacaaacaaaatcggagcaccccaaggagatgcacttggtctaatgaaacctttgctcaacaactcttgaagttgggcctttaactctcttaactctacgggagccattctataagggggtatagaaatggggcgtgtgcccggttcaagatcgatacagaagtcaatatccctatctggtggcataccaggaagatctgcagggaacacatccaaaaactcacagactataaaaaccgactcaatcgaaggtacttgggtagtgtcatccttgagatgtgccaagaaagctaaacaccctttactaaccattttcttagcacgaagaaaggagatgatgcacaccggattggaagtgtagtcaccctcccacactaacggatctgtcccaggcttggctaatgtcaccgttttagcattacaatccaagatcgcaaattgcggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaaatctacataagtgttgctccccacaaagttcaccaaacaagacctatataccttttcaactaccacagactcacccaccggagtagaaacacgaataggcatatcaagtaattcacaatgtaaatttagaccgttag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="24570" stop="23310"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24270" g_stop="23610" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="661" r_length="661" r_score="0.936"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E351414" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E351414" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24270" e_stop="23610"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACTGACTCAATCGTAGGTACTTGGGTAGTGTCATCCTTGAGATTTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCCTAGCACAAAGAAATGAGACGATGCGGACCGGATTGGGAGTGTAGTCACCCTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAGTCACGTCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAGACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAG</genome_strand>
        <mrna_strand>CGGAAACTCCCATCCTTCTTCTTCACAAACAAAATCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAACCTTTGCTCAACAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCTACGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGTGTGCCCGGTTCAAGATCGATACAGAAGTCAATATCCCTATCTGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAAAAACTCACAGACTATAAAAACCGACTCAATCGAAGGTACTTGGGTAGTGTCATCCTTGAGATGTGCCAAGAAAGCTAAACACCCTTTACTAACCATTTTCTTAGCACGAAGAAAGGAGATGATGCACACCGGATTGGAAGTGTAGTCACCCTCCCACACTAACGGATCTGTCCCAGGCTTGGCTAATGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTCACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCGTTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368762" ref_strand="+" ref_description="SGN-E368762 [TUS-22-P2]">
      <seq>gtctcacccaattcttcactgtctcaatcttacaaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagagtatatcagtatatcatcaataaacatgatgacaaagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagagaagacacaagcaccttgtaactgatcgaacaagtcatcaatgcgaggaagtggatacttgttcttaatagttaccttgttcaactgccggtagtctatgcacatccgaaaactcccatccttcttcttcacaaaccaaaccggagcaccccaaggagatgcacttggtctaatgaagactttgctcaaaaactcttgaagttgggcctttaactctcttaactccgcgggagccattctataagggggtatagaaatggggcgagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="25088" stop="23810"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24788" g_stop="24109" g_length="680"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="679" r_length="679" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E368762" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E368762" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24788" e_stop="24109"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCTCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACCACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCATTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGTAAGAGGATACTTGTTCTTAATAGTTACTTTATTCAGTTGTCTGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTA</genome_strand>
        <mrna_strand>GTCTCACCCAATTCTTCACTGTCTCAATCTTACAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGTATATCAGTATATCATCAATAAACATGATGACAAAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGGAAGTGGATACTTGTTCTTAATAGTTACCTTGTTCAACTGCCGGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTCACAAACCAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATGAAGACTTTGCTCAAAAACTCTTGAAGTTGGGCCTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379315" ref_strand="+" ref_description="SGN-E379315 [TUS-1-J2]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttncactgccggtagcctatgcacatccgaaaactccaatccttcttctttacaaacaaaaccggagcaccccaaggagatgcagttggtctaatgaagcctttgctcacaactctttgaagtggtcttttaactctcttaactctgcgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="25159" stop="23847"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24859" g_stop="24147" g_length="713"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="712" r_length="712" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E379315" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E379315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24859" e_stop="24147"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACGAATCGACGGTAGTAACTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCTCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACCACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCATTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGTAAGAGGATACTTGTTCTTAATAGTTACTTTATTCAGTTGTCTGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTC-TTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGG</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTNCACTGCCGGTAGCCTATGCACATCCGAAAACTCCAATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCAGTTGGTCTAATGAAGCCTTTGCTC-ACAACTCTTTGAAGTGGT-CTTTTAACTCTCTTAACTCTGCGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375319" ref_strand="+" ref_description="SGN-E375319 [TUS-15-F18]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatgcgaggaagaggatacttgttctttatggttaccttgttcaactgccggtagcctatgcacatccgaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="25159" stop="23964"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24859" g_stop="24264" g_length="596"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="596" r_length="596" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E375319" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>596</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24859" e_stop="24264"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACGAATCGACGGTAGTAACTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCTCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACCACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCATTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGTAAGAGGATACTTGTTCTTAATAGTTACTTTATTCAGTTGTCTGTAGTCTATGCACATCCGAAAAC</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAATGCGAGGAAGAGGATACTTGTTCTTTATGGTTACCTTGTTCAACTGCCGGTAGCCTATGCACATCCGAAAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E204434" ref_strand="+" ref_description="SGN-E204434 [cLEC-13-J16]">
      <seq>gaatcccttgacaaatcggcggtagtagctagctaacccaacaaagctccttatttctgacacattagtaggtcttacccaattcttcactgtctcaatcttagaaggatccaccatcactccatccttagaaaccacgttccccaagaaggacactacatctagccaaaactcacacttagagaacttggcataaaactttttctccctcaacatttccaataccattctcaaatgctcttcatgttcctccttacttttagagtatatcagtatatcatcaataaatacgatcacaaagagatccaaatatggcttaaaaatcccttttattaaactcataaacgcagcaggggcattcataagaccaaaagacatcactacaaatttgtaatgcccatacctggttctaaaagcagtctttggcacatccgttgcccgtattttcaattgatgataaccggatctcaagtcaatcttagaaaagacacaagcaccttgtaactgatcgaacaagtcattaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="25159" stop="24034"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24859" g_stop="24335" g_length="525"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="525" r_length="525" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E204434" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E204434" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24859" e_stop="24335"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAATCCCTTGACGAATCGACGGTAGTAACTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCTCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACCACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCATTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAAT</genome_strand>
        <mrna_strand>GAATCCCTTGACAAATCGGCGGTAGTAGCTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTAGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTTCCCCAAGAAGGACACTACATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAACTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTCCTTACTTTTAGAGTATATCAGTATATCATCAATAAATACGATCACAAAGAGATCCAAATATGGCTTAAAAATCCCTTTTATTAAACTCATAAACGCAGCAGGGGCATTCATAAGACCAAAAGACATCACTACAAATTTGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACATCCGTTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAAAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240817" ref_strand="+" ref_description="SGN-E240817 [cLED-24-J5]">
      <seq>gtctcacccatttcttcactgtctcaatcttaccaggatccaccatcactccatccttagaaaccacgtgccccaagaaggacactgcatctatccaaaactcacacttagagaacttggcataaagctttttctccctcaacatttctaatacaattctcaaatgctcctcatgttccttcttactattagaggatatcagtatatcatcaatgaacatgatgacgcagagatccaaatatggcttaaaatcccgttcatcaagctcatgaacgcagcaggggcattcgtaagaccaaaagacatcactacaaattcgtaatgcccatacctggttctaaaagcagtctttggcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="25088" stop="24130"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="24788" g_stop="24430" g_length="359"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E240817" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>359</cumulative_length_of_scored_exons>
        <coverage percentage="1.003" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E240817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="24788" e_stop="24430"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCTCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACCACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACA</genome_strand>
        <mrna_strand>GTCTCACCCATTTCTTCACTGTCTCAATCTTACCAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTATCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCTAATACAATTCTCAAATGCTCCTCATGTTCCTTCTTACTATTAGAGGATATCAGTATATCATCAATGAACATGATGACGCAGAGATCCAAATATGGCTT-AAAATCCCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAAGACATCACTACAAATTCGTAATGCCCATACCTGGTTCTAAAAGCAGTCTTTGGCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577888" ref_strand="+" ref_description="SGN-E577888 [LE08BA01]">
      <seq>ctacatctcctaccatacaatgcttcaaatggagccatatcaatgcttgattgatagctattattgtatgaaaactccgctaagggtaggaagctatcccaatgaccaccaaactctatcacacacgcacgaagcatattctccaacacttgaatcgttcgctcagactgaccatcgggagaactagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="26640" stop="25863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="26340" g_stop="26164" g_length="177"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="177" r_length="177" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E577888" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>177</cumulative_length_of_scored_exons>
        <coverage percentage="0.941" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E577888" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="26340" e_stop="26164"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTACATCTCCTACCATACAATGCTTCAAATGGGGCCATATTAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCTGCTAAGGGTAAGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATTGTCCTTTCAGACTGGCCATCG</genome_strand>
        <mrna_strand>CTACATCTCCTACCATACAATGCTTCAAATGGAGCCATATCAATGCTTGATTGATAGCTATTATTGTATGAAAACTCCGCTAAGGGTAGGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATTCTCCAACACTTGAATCGTTCGCTCAGACTGACCATCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745583" ref_strand="+" ref_description="SGN-E745583 [GI|47105871]">
      <seq>gagctcataacatttctaatcaagcgaaccaaaaaaaaatcattcagataaaaaggaacaagaacgccccctttttccaatttagggtttcttccttctccaatcgaagtttgagagaagcgattcaatcgaacaaccatgccgaagaacaagggtaagggaggtaagaacaggaagagaggaaagaatgaagccgatgatgagaaaagagagcttgttttcaaagaagatggacaggaatatgctcaggtccttcgtatgcttggtaatggacgatgtgaagctatgtgtattgatggaactaagcgtctttgtcacatacgtggtaagatgcataagaaagtatggatcgctgctggtgatatcatccttgttggcctacgtgactatcaggatgacaaagctgatgtgatcttgaagtacatgcctgatgaggccaggttattgagggcatatggagagttaccagagaacacaagacttaatgagggcattgctaatggtcttgatgaagaggatgagggtgctggtgatgattacattgagtttgaggatgaagacattgataaaatctaatctaaactcaaaattgttgttactgaggtctatcatatgccttgctaatatttctgtggcgttctttttccttaaacattgaaaaagtatttttgtgtatcgtttgaagttgtatgattgagttttgtgcatcaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="32733" stop="35186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33032" g_stop="33424" g_length="393"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="393" r_length="393" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33425" i_stop="34567" i_length="1143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34568" g_stop="34899" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="725" r_length="332" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E745583" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E745583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33032" e_stop="33424"/>
          <exon e_start="34568" e_stop="34899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCTCATAACATTTCTAATCAAGCGAACCAAAAAAAAATCATTCAGATAAAAAGGAACAAGAACGCCCCCTTTTTCCAATTTAGGGTTTCTTCCTTCTCCAATCGAAGTTTGAGAGAAGCGATTCAATCGAACAACCATGCCGAAGAACAAGGGTAAGGGAGGTAAGAACAGGAAGAGAGGAAAGAATGAAGCCGATGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTACGTGACTATCAGGCAAGATCCAATTTTTCCGACACCCTTTTTCTTCTATTTGTGTTTTTCGTATCTCTTTTCAGAATTTTGTTGTGTTTTTCTTTAAGAAATGAAATTTGGTATTACAAGCTTGAGGATCAAACACTCACCAACAAGGTGTAAATTTGTTGTGACAAAGATGTTTTCTTTTTGGTAGTTTCTATTCTGTAGTATAAAACTTTGATCACCTTGCGTATATGGATAAATGGGATGATGTACAAAAGTAGCCTACTCTGTATTAGCATAGTTGATTCCATATTTTTTGATTGAAGGGTATAAAAGGCCCCAGGATTTTAAGTTAATGGATATGGTGCACCTACTACTTTGTAGTGATATAAACATGCTATCTCAAGGAAGTAGCAAGTCTATGTATGATTGATTTGTGTATGAATATATGTGTGTGCTGGGGCAGATTTAAGACTTGGGGTTTAATGGTTAAATAATCTCAAATTATAAAGAAAAAGCGAGACAAAATGAATATGTGTGTGCGCGCTGAGGCAGATTTAAGACTTGGAGTTCAATTGTTAAATAATCTCAAATTATAAAGAAAAAGTGAGACAAAACGAAGGCTTGAGTTGTTTTTGTTTAAAAAGACAAGGAAAAAAAAACCAAGATAACTATGTTGCCCAAAGGATTCAAACCCTTGCAGAGGACAGCAAAGCTTAACAGGTTTCCCCTTTGCCACTATCAACAGACCATTTTTATGTTGGGTTCCAACTAAAAAATTATTAATATGTTTAGTGGATTCTCAATATAAATACAAGGTTTGTGCAAAAGTTACTCGTTTCCGGAAACCCACGCATATATCCTAACCCATTGTATGCCCGCAAGTGTGTCTGTGTGTGTATGTATATATGATATATGTATGTATGTACGTGTCTATTCCTGCTTCTGGCTTGACATATATCTCTGTTTCAAGAGAAAATAGTTTTTGTAATTGCTACTTACTGCTGATTTTCAATTAGAAGTGGCACTGCTGTGTGTGATTGAGTCTGTGTATGTACATCTCCTTTCCTGTTTAATTAGTGCCTGATAAGCCTAAATTATTAAAAGTTTTCTTTGTTGAGATTTTGGTTCTTTCCCAATGTGGATATTGCTGTTTTTAACTAGTTTTGATTTTCCCAGGATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAACACAAGACTTAATGAGGGCATTGCTAATGGTCTTGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAGTTTGAGGATGAAGACATTGATAAAATCTAATCTAAACTCAAAATTGTTGTTACTGAGGTCTATCATATGCCTTGCTAATATTTCTGTGGCGTTCTTTTTCCTTAAACATTGAAAAAGTATTTTTGTGTATCGTTTGAAGTTGTATGATTGAGTTTTGTGCATCAAAGTTCTGTCTGAAA</genome_strand>
        <mrna_strand>GAGCTCATAACATTTCTAATCAAGCGAACCAAAAAAAAATCATTCAGATAAAAAGGAACAAGAACGCCCCCTTTTTCCAATTTAGGGTTTCTTCCTTCTCCAATCGAAGTTTGAGAGAAGCGATTCAATCGAACAACCATGCCGAAGAACAAGGGTAAGGGAGGTAAGAACAGGAAGAGAGGAAAGAATGAAGCCGATGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTACGTGACTATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAGGGCATATGGAGAGTTACCAGAGAACACAAGACTTAATGAGGGCATTGCTAATGGTCTTGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAGTTTGAGGATGAAGACATTGATAAAATCTAATCTAAACTCAAAATTGTTGTTACTGAGGTCTATCATATGCCTTGCTAATATTTCTGTGGCGTTCTTTTTCCTTAAACATTGAAAAAGTATTTTTGTGTATCGTTTGAAGTTGTATGATTGAGTTTTGTGCATCAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E453790" ref_strand="+" ref_description="SGN-E453790 [cSTS-21-K13]">
      <seq>aaatcattcagccaaaaaggaacaagaacgcccccctttttccaatttagggtttcttccttctccaatcgaagtttgagagaagcgattcaatcaaacaaccatgccgaagaacaagggtaagggaggtaagaacaggaagagaggaaagaatgaagccgacgatgagaaaagagagcttgttttcaaagaagatggacaggaatatgctcaggtccttcgtatgcttggtaatggacgttgtgaagctatgtgtattgatggaactaagcgtctttgtcacatacgtggtaagatgcataagaaagtatggatcgctgctggtgatatcatccttgttggcctccgtgactatcaggatgacaaagctgatgtgatcttgaagtacatgcctgatgaggccaggttattgaaggcatatggagagttaccagagaacacaaggcttaatgagggcattgctaatggtcttgatgaagaggatgagggtgctggtgatgattacattgagtttgaggatgaagacattgacaaaatctgatctaaactcaaaactgttgttactgaggtctatcataggccttgctaatatttctgtggcgttctttttccataaacattgaaaaagtatttttgtgtatcgtttgaagttgtatgattgagttttgtgcatcgaagttctgtctgaaaatttgtgctttcatgaaatgaatgcaatattctggctagtttctattcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="32768" stop="35248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33068" g_stop="33424" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33425" i_stop="34567" i_length="1143">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34568" g_stop="34957" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="359" r_stop="748" r_length="390" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E453790" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>747</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E453790" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33068" e_stop="33424"/>
          <exon e_start="34568" e_stop="34957"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCATTCAGATAAAAAGGAACAAGAACG-CCCCCTTTTTCCAATTTAGGGTTTCTTCCTTCTCCAATCGAAGTTTGAGAGAAGCGATTCAATCGAACAACCATGCCGAAGAACAAGGGTAAGGGAGGTAAGAACAGGAAGAGAGGAAAGAATGAAGCCGATGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTACGTGACTATCAGGCAAGATCCAATTTTTCCGACACCCTTTTTCTTCTATTTGTGTTTTTCGTATCTCTTTTCAGAATTTTGTTGTGTTTTTCTTTAAGAAATGAAATTTGGTATTACAAGCTTGAGGATCAAACACTCACCAACAAGGTGTAAATTTGTTGTGACAAAGATGTTTTCTTTTTGGTAGTTTCTATTCTGTAGTATAAAACTTTGATCACCTTGCGTATATGGATAAATGGGATGATGTACAAAAGTAGCCTACTCTGTATTAGCATAGTTGATTCCATATTTTTTGATTGAAGGGTATAAAAGGCCCCAGGATTTTAAGTTAATGGATATGGTGCACCTACTACTTTGTAGTGATATAAACATGCTATCTCAAGGAAGTAGCAAGTCTATGTATGATTGATTTGTGTATGAATATATGTGTGTGCTGGGGCAGATTTAAGACTTGGGGTTTAATGGTTAAATAATCTCAAATTATAAAGAAAAAGCGAGACAAAATGAATATGTGTGTGCGCGCTGAGGCAGATTTAAGACTTGGAGTTCAATTGTTAAATAATCTCAAATTATAAAGAAAAAGTGAGACAAAACGAAGGCTTGAGTTGTTTTTGTTTAAAAAGACAAGGAAAAAAAAACCAAGATAACTATGTTGCCCAAAGGATTCAAACCCTTGCAGAGGACAGCAAAGCTTAACAGGTTTCCCCTTTGCCACTATCAACAGACCATTTTTATGTTGGGTTCCAACTAAAAAATTATTAATATGTTTAGTGGATTCTCAATATAAATACAAGGTTTGTGCAAAAGTTACTCGTTTCCGGAAACCCACGCATATATCCTAACCCATTGTATGCCCGCAAGTGTGTCTGTGTGTGTATGTATATATGATATATGTATGTATGTACGTGTCTATTCCTGCTTCTGGCTTGACATATATCTCTGTTTCAAGAGAAAATAGTTTTTGTAATTGCTACTTACTGCTGATTTTCAATTAGAAGTGGCACTGCTGTGTGTGATTGAGTCTGTGTATGTACATCTCCTTTCCTGTTTAATTAGTGCCTGATAAGCCTAAATTATTAAAAGTTTTCTTTGTTGAGATTTTGGTTCTTTCCCAATGTGGATATTGCTGTTTTTAACTAGTTTTGATTTTCCCAGGATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAACACAAGACTTAATGAGGGCATTGCTAATGGTCTTGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAGTTTGAGGATGAAGACATTGATAAAATCTAATCTAAACTCAAAATTGTTGTTACTGAGGTCTATCATATGCCTTGCTAATATTTCTGTGGCGTTCTTTTTCCTTAAACATTGAAAAAGTATTTTTGTGTATCGTTTGAAGTTGTATGATTGAGTTTTGTGCATCAAAGTTCTGTCTGAAAATTTGTGCTTTCATGAAATGAATGCAATATTCTGGCTTGTTTCTATCCAGTTATGCAT</genome_strand>
        <mrna_strand>AAATCATTCAGCCAAAAAGGAACAAGAACGCCCCCCTTTTTCCAATTTAGGGTTTCTTCCTTCTCCAATCGAAGTTTGAGAGAAGCGATTCAATCAAACAACCATGCCGAAGAACAAGGGTAAGGGAGGTAAGAACAGGAAGAGAGGAAAGAATGAAGCCGACGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGTTGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTCCGTGACTATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAACACAAGGCTTAATGAGGGCATTGCTAATGGTCTTGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAGTTTGAGGATGAAGACATTGACAAAATCTGATCTAAACTCAAAACTGTTGTTACTGAGGTCTATCATAGGCCTTGCTAATATTTCTGTGGCGTTCTTTTTCCATAAACATTGAAAAAGTATTTTTGTGTATCGTTTGAAGTTGTATGATTGAGTTTTGTGCATCGAAGTTCTGTCTGAAAATTTGTGCTTTCATGAAATGAATGCAATATTCTGGCTAGTTTCTATTCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E602119" ref_strand="+" ref_description="SGN-E602119 [55175]">
      <seq>gcacgaggaaggaacaagaacgcccccctttttccaatttagggtttcttccttctccaatcgaagtttgagagaagcgattcaatcaaacaaccatgccgaagaacaagggtaagggaggtaagaacaggaagagaggaaagaacgaagccgacgatgagaaaagagagcttgttttcaaagaagacggacaggaatatgctcaggtccttcgtatgcttggtaatggacgttgtgaagctatgtgtattgatggaactaagcgtcttagtcacatacgtggtaagatgcataagaaagtatggatcgctgctggtgatatcatccttgttggcctccgtgactatcaggatgacaaagctgatgtgatcttgaagtacatgcctgatgaggccaggttattgaaggcatatggagagttaccagagaatacaaggcttaatgagggcattgctaatggtctggatgaagaggatgagggtgctggtgatgattacattgagtttgaggatgaagacatcgacaaaatctaatctaaactcaaaaactgttgttactgaggtctatcatagaccttgctaatatttctgtggcgttctttttccatgaacattgaaaaagtatttttgtgtatcgtttgaagttgtatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="32784" stop="35168"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33075" g_stop="33424" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="350" r_length="350" r_score="0.957"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33425" i_stop="34567" i_length="1143">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34568" g_stop="34868" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="652" r_length="302" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E602119" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>651</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E602119" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33075" e_stop="33424"/>
          <exon e_start="34568" e_stop="34868"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGATAAAAAGGAACAAGAACG-CCCCCTTTTTCCAATTTAGGGTTTCTTCCTTCTCCAATCGAAGTTTGAGAGAAGCGATTCAATCGAACAACCATGCCGAAGAACAAGGGTAAGGGAGGTAAGAACAGGAAGAGAGGAAAGAATGAAGCCGATGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTACGTGACTATCAGGCAAGATCCAATTTTTCCGACACCCTTTTTCTTCTATTTGTGTTTTTCGTATCTCTTTTCAGAATTTTGTTGTGTTTTTCTTTAAGAAATGAAATTTGGTATTACAAGCTTGAGGATCAAACACTCACCAACAAGGTGTAAATTTGTTGTGACAAAGATGTTTTCTTTTTGGTAGTTTCTATTCTGTAGTATAAAACTTTGATCACCTTGCGTATATGGATAAATGGGATGATGTACAAAAGTAGCCTACTCTGTATTAGCATAGTTGATTCCATATTTTTTGATTGAAGGGTATAAAAGGCCCCAGGATTTTAAGTTAATGGATATGGTGCACCTACTACTTTGTAGTGATATAAACATGCTATCTCAAGGAAGTAGCAAGTCTATGTATGATTGATTTGTGTATGAATATATGTGTGTGCTGGGGCAGATTTAAGACTTGGGGTTTAATGGTTAAATAATCTCAAATTATAAAGAAAAAGCGAGACAAAATGAATATGTGTGTGCGCGCTGAGGCAGATTTAAGACTTGGAGTTCAATTGTTAAATAATCTCAAATTATAAAGAAAAAGTGAGACAAAACGAAGGCTTGAGTTGTTTTTGTTTAAAAAGACAAGGAAAAAAAAACCAAGATAACTATGTTGCCCAAAGGATTCAAACCCTTGCAGAGGACAGCAAAGCTTAACAGGTTTCCCCTTTGCCACTATCAACAGACCATTTTTATGTTGGGTTCCAACTAAAAAATTATTAATATGTTTAGTGGATTCTCAATATAAATACAAGGTTTGTGCAAAAGTTACTCGTTTCCGGAAACCCACGCATATATCCTAACCCATTGTATGCCCGCAAGTGTGTCTGTGTGTGTATGTATATATGATATATGTATGTATGTACGTGTCTATTCCTGCTTCTGGCTTGACATATATCTCTGTTTCAAGAGAAAATAGTTTTTGTAATTGCTACTTACTGCTGATTTTCAATTAGAAGTGGCACTGCTGTGTGTGATTGAGTCTGTGTATGTACATCTCCTTTCCTGTTTAATTAGTGCCTGATAAGCCTAAATTATTAAAAGTTTTCTTTGTTGAGATTTTGGTTCTTTCCCAATGTGGATATTGCTGTTTTTAACTAGTTTTGATTTTCCCAGGATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAACACAAGACTTAATGAGGGCATTGCTAATGGTCTTGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAGTTTGAGGATGAAGACATTGATAAAATCTAATCTAAACTC-AAAATTGTTGTTACTGAGGTCTATCATATGCCTTGCTAATATTTCTGTGGCGTTCTTTTTCCTTAAACATTGAAAAAGTATTTTTGTGTATCGTTTGAAGTTGTATGAT</genome_strand>
        <mrna_strand>GCAC-GAGGAAGGAACAAGAACGCCCCCCTTTTTCCAATTTAGGGTTTCTTCCTTCTCCAATCGAAGTTTGAGAGAAGCGATTCAATCAAACAACCATGCCGAAGAACAAGGGTAAGGGAGGTAAGAACAGGAAGAGAGGAAAGAACGAAGCCGACGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGACGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGTTGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTAGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTCCGTGACTATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAATACAAGGCTTAATGAGGGCATTGCTAATGGTCTGGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAGTTTGAGGATGAAGACATCGACAAAATCTAATCTAAACTCAAAAACTGTTGTTACTGAGGTCTATCATAGACCTTGCTAATATTTCTGTGGCGTTCTTTTTCCATGAACATTGAAAAAGTATTTTTGTGTATCGTTTGAAGTTGTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E459417" ref_strand="+" ref_description="SGN-E459417 [cPRO-27-F18]">
      <seq>ttctgcacgcccccctttttccatttagggtttcttccttctccaatcgaagtttgatagaagcgattcaatcaaacaaccatgccgaagaacaagggtaagggaggtaagaacaggaagagaggaaagaatgaagccgacgatgagaaaagagagcttgttttcaaagaagatggacaggaatatgctcaggtccttcgtatgcttggtaatggacgttgtgaagctatgtgtattgatggaactaagcgtctttgtcacatacgtggtaagatgcataagaaagtatggatcgctgctggtgatatcatccttgttggcctccgtgactatcaggatgacaaagctgatgtgatcttgaagtacatgcctgatgaggccaggttattgaaggcatatggagagttaccagagaacacaaggcttaatgagggcattgctaatggtcttgatgaagaggatgagggtgctggtgatgattacattgagtttgaggatgaagacattgacaaaatctgatctaaactcaaaactgttgttactgaggtctatcataggccttgctaatatttctgtggcgttctttttccataaacattgaaaaagtatttttgtgtatcgtttgaagttgtatgattgagttttgtgcatcgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="32793" stop="35186"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33089" g_stop="33424" g_length="336"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33425" i_stop="34567" i_length="1143">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34568" g_stop="34886" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="655" r_length="319" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="656" polyA_stop="665"/>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E459417" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E459417" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33089" e_stop="33424"/>
          <exon e_start="34568" e_stop="34886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAGAACGCCCCCTTTTTCCAATTTAGGGTTTCTTCCTTCTCCAATCGAAGTTTGAGAGAAGCGATTCAATCGAACAACCATGCCGAAGAACAAGGGTAAGGGAGGTAAGAACAGGAAGAGAGGAAAGAATGAAGCCGATGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTACGTGACTATCAGGCAAGATCCAATTTTTCCGACACCCTTTTTCTTCTATTTGTGTTTTTCGTATCTCTTTTCAGAATTTTGTTGTGTTTTTCTTTAAGAAATGAAATTTGGTATTACAAGCTTGAGGATCAAACACTCACCAACAAGGTGTAAATTTGTTGTGACAAAGATGTTTTCTTTTTGGTAGTTTCTATTCTGTAGTATAAAACTTTGATCACCTTGCGTATATGGATAAATGGGATGATGTACAAAAGTAGCCTACTCTGTATTAGCATAGTTGATTCCATATTTTTTGATTGAAGGGTATAAAAGGCCCCAGGATTTTAAGTTAATGGATATGGTGCACCTACTACTTTGTAGTGATATAAACATGCTATCTCAAGGAAGTAGCAAGTCTATGTATGATTGATTTGTGTATGAATATATGTGTGTGCTGGGGCAGATTTAAGACTTGGGGTTTAATGGTTAAATAATCTCAAATTATAAAGAAAAAGCGAGACAAAATGAATATGTGTGTGCGCGCTGAGGCAGATTTAAGACTTGGAGTTCAATTGTTAAATAATCTCAAATTATAAAGAAAAAGTGAGACAAAACGAAGGCTTGAGTTGTTTTTGTTTAAAAAGACAAGGAAAAAAAAACCAAGATAACTATGTTGCCCAAAGGATTCAAACCCTTGCAGAGGACAGCAAAGCTTAACAGGTTTCCCCTTTGCCACTATCAACAGACCATTTTTATGTTGGGTTCCAACTAAAAAATTATTAATATGTTTAGTGGATTCTCAATATAAATACAAGGTTTGTGCAAAAGTTACTCGTTTCCGGAAACCCACGCATATATCCTAACCCATTGTATGCCCGCAAGTGTGTCTGTGTGTGTATGTATATATGATATATGTATGTATGTACGTGTCTATTCCTGCTTCTGGCTTGACATATATCTCTGTTTCAAGAGAAAATAGTTTTTGTAATTGCTACTTACTGCTGATTTTCAATTAGAAGTGGCACTGCTGTGTGTGATTGAGTCTGTGTATGTACATCTCCTTTCCTGTTTAATTAGTGCCTGATAAGCCTAAATTATTAAAAGTTTTCTTTGTTGAGATTTTGGTTCTTTCCCAATGTGGATATTGCTGTTTTTAACTAGTTTTGATTTTCCCAGGATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAACACAAGACTTAATGAGGGCATTGCTAATGGTCTTGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAGTTTGAGGATGAAGACATTGATAAAATCTAATCTAAACTCAAAATTGTTGTTACTGAGGTCTATCATATGCCTTGCTAATATTTCTGTGGCGTTCTTTTTCCTTAAACATTGAAAAAGTATTTTTGTGTATCGTTTGAAGTTGTATGATTGAGTTTTGTGCATCAAA</genome_strand>
        <mrna_strand>TTCTGCACGCCCCCCTTTTTCCATTTAGGGTTTCTTCCTTCTCCAATCGAAGTTTGATAGAAGCGATTCAATCAAACAACCATGCCGAAGAACAAGGGTAAGGGAGGTAAGAACAGGAAGAGAGGAAAGAATGAAGCCGACGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGTTGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTCCGTGACTATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAACACAAGGCTTAATGAGGGCATTGCTAATGGTCTTGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAGTTTGAGGATGAAGACATTGACAAAATCTGATCTAAACTCAAAACTGTTGTTACTGAGGTCTATCATAGGCCTTGCTAATATTTCTGTGGCGTTCTTTTTCCATAAACATTGAAAAAGTATTTTTGTGTATCGTTTGAAGTTGTATGATTGAGTTTTGTGCATCGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E484585" ref_strand="+" ref_description="SGN-E484585 [cSTE-13-N14]">
      <seq>caagaacggccccctttttccatttagggtttcttccttctccaatcgaagtttgggagaagcgattcaatcaaacaaccatgccgaagaacaagggtaagggaggtaagaacaggaagagaggaaagaacgaagccgacgatgagaaaagagagcttgttttcaaagaagacggacaggaatatgctcaggtccttcgtatgcttggtaatggacgttgtgaagctatgtgtattgatggaactaagcgtcttagtcacatacgtggtaagatgcataagaaagtatggatcgctgctggtgatatcatccttgttggcctccgtgactatcaggatgacaaagctgatgtgatcttgaagtacatgcctgatgaggccaggttattgaaggcatatggagagttaccagagaatacaaggcttaatgagggcattgctaatggtctggatgaagaggatgagggtgctggtgatgattacattgagtttgaggatgaagacatcgacaaaatctaatctaaactcaaaaactgttgttactgaggtctatcatagaccttgctaatatttctgtggcgttctttttccatgaacattgaaaaagtatttttgtgtatcgtttgaagttgtatgattgagtcttgtgcgtcgaagttctgtctgaaatttgtgctttcatgaaatgaatgcaatattctggctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="32790" stop="35236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33090" g_stop="33424" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="335" r_length="335" r_score="0.964"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33425" i_stop="34567" i_length="1143">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34568" g_stop="34937" g_length="370"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="705" r_length="370" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E484585" ref_strand="+">
        <total_alignment_score>0.959</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E484585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33090" e_stop="33424"/>
          <exon e_start="34568" e_stop="34937"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAACGCCCCCTTTTTCCAATTTAGGGTTTCTTCCTTCTCCAATCGAAGTTTGAGAGAAGCGATTCAATCGAACAACCATGCCGAAGAACAAGGGTAAGGGAGGTAAGAACAGGAAGAGAGGAAAGAATGAAGCCGATGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTACGTGACTATCAGGCAAGATCCAATTTTTCCGACACCCTTTTTCTTCTATTTGTGTTTTTCGTATCTCTTTTCAGAATTTTGTTGTGTTTTTCTTTAAGAAATGAAATTTGGTATTACAAGCTTGAGGATCAAACACTCACCAACAAGGTGTAAATTTGTTGTGACAAAGATGTTTTCTTTTTGGTAGTTTCTATTCTGTAGTATAAAACTTTGATCACCTTGCGTATATGGATAAATGGGATGATGTACAAAAGTAGCCTACTCTGTATTAGCATAGTTGATTCCATATTTTTTGATTGAAGGGTATAAAAGGCCCCAGGATTTTAAGTTAATGGATATGGTGCACCTACTACTTTGTAGTGATATAAACATGCTATCTCAAGGAAGTAGCAAGTCTATGTATGATTGATTTGTGTATGAATATATGTGTGTGCTGGGGCAGATTTAAGACTTGGGGTTTAATGGTTAAATAATCTCAAATTATAAAGAAAAAGCGAGACAAAATGAATATGTGTGTGCGCGCTGAGGCAGATTTAAGACTTGGAGTTCAATTGTTAAATAATCTCAAATTATAAAGAAAAAGTGAGACAAAACGAAGGCTTGAGTTGTTTTTGTTTAAAAAGACAAGGAAAAAAAAACCAAGATAACTATGTTGCCCAAAGGATTCAAACCCTTGCAGAGGACAGCAAAGCTTAACAGGTTTCCCCTTTGCCACTATCAACAGACCATTTTTATGTTGGGTTCCAACTAAAAAATTATTAATATGTTTAGTGGATTCTCAATATAAATACAAGGTTTGTGCAAAAGTTACTCGTTTCCGGAAACCCACGCATATATCCTAACCCATTGTATGCCCGCAAGTGTGTCTGTGTGTGTATGTATATATGATATATGTATGTATGTACGTGTCTATTCCTGCTTCTGGCTTGACATATATCTCTGTTTCAAGAGAAAATAGTTTTTGTAATTGCTACTTACTGCTGATTTTCAATTAGAAGTGGCACTGCTGTGTGTGATTGAGTCTGTGTATGTACATCTCCTTTCCTGTTTAATTAGTGCCTGATAAGCCTAAATTATTAAAAGTTTTCTTTGTTGAGATTTTGGTTCTTTCCCAATGTGGATATTGCTGTTTTTAACTAGTTTTGATTTTCCCAGGATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAACACAAGACTTAATGAGGGCATTGCTAATGGTCTTGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAGTTTGAGGATGAAGACATTGATAAAATCTAATCTAAACTC-AAAATTGTTGTTACTGAGGTCTATCATATGCCTTGCTAATATTTCTGTGGCGTTCTTTTTCCTTAAACATTGAAAAAGTATTTTTGTGTATCGTTTGAAGTTGTATGATTGAGTTTTGTGCATCAAAGTTCTGTCTGAAAATTTGTGCTTTCATGAAATGAATGCAATATTCTGGCTT</genome_strand>
        <mrna_strand>CAAGAACGGCCCCCTTTTTCCATTTAGGGTTTCTTCCTTCTCCAATCGAAGTTTGGGAGAAGCGATTCAATCAAACAACCATGCCGAAGAACAAGGGTAAGGGAGGTAAGAACAGGAAGAGAGGAAAGAACGAAGCCGACGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGACGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGTTGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTAGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTCCGTGACTATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAATACAAGGCTTAATGAGGGCATTGCTAATGGTCTGGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAGTTTGAGGATGAAGACATCGACAAAATCTAATCTAAACTCAAAAACTGTTGTTACTGAGGTCTATCATAGACCTTGCTAATATTTCTGTGGCGTTCTTTTTCCATGAACATTGAAAAAGTATTTTTGTGTATCGTTTGAAGTTGTATGATTGAGTCTTGTGCGTCGAAGTTCTGTCTG-AAATTTGTGCTTTCATGAAATGAATGCAATATTCTGGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E575915" ref_strand="+" ref_description="SGN-E575915 [35615]">
      <seq>caagaacgcccccctttttccaatttagggtttcttccttctccaatcgaagtttgagagaagcgattcaatcaaacaaccatgccgaagaacaagggtaagggaggtaagaacaggaagagaggaaagaacgaagccgacgatgagaaaagagagcttgttttcaaagaagacggacaggaatatgctcaggtccttcgtatgcttggtaatggacgttgtgaagctatgtgtattgatggaactaagcgtcttagtcacatacgtggtaagatgcataagaaagtatggatcgctgctggtgatatcatccttgttggcctccgtgactatcaggatgacaaagctgatgtgatcttgaagtacatgcctgatgaggccaggttattgaaggcatatggagagttaccagagaatacaaggcttaatgagggcattgctaatggtctggatgaagaggatgagggtgctggtgatgattacattgagtttgaggatgaagacatcgacaaaatctaatctaaagtcaaaaactgttgttactgaggtctatcatagaccttgttaatatttctgtggcgttctttttccatgaaacattgaaaaagtatttcggagtatcgtttgaaggttgtcatgattgagttcttgttgcgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="32790" stop="35183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33090" g_stop="33424" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33425" i_stop="34567" i_length="1143">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34568" g_stop="34884" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="659" r_length="323" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E575915" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>652</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E575915" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33090" e_stop="33424"/>
          <exon e_start="34568" e_stop="34884"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAACG-CCCCCTTTTTCCAATTTAGGGTTTCTTCCTTCTCCAATCGAAGTTTGAGAGAAGCGATTCAATCGAACAACCATGCCGAAGAACAAGGGTAAGGGAGGTAAGAACAGGAAGAGAGGAAAGAATGAAGCCGATGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTACGTGACTATCAGGCAAGATCCAATTTTTCCGACACCCTTTTTCTTCTATTTGTGTTTTTCGTATCTCTTTTCAGAATTTTGTTGTGTTTTTCTTTAAGAAATGAAATTTGGTATTACAAGCTTGAGGATCAAACACTCACCAACAAGGTGTAAATTTGTTGTGACAAAGATGTTTTCTTTTTGGTAGTTTCTATTCTGTAGTATAAAACTTTGATCACCTTGCGTATATGGATAAATGGGATGATGTACAAAAGTAGCCTACTCTGTATTAGCATAGTTGATTCCATATTTTTTGATTGAAGGGTATAAAAGGCCCCAGGATTTTAAGTTAATGGATATGGTGCACCTACTACTTTGTAGTGATATAAACATGCTATCTCAAGGAAGTAGCAAGTCTATGTATGATTGATTTGTGTATGAATATATGTGTGTGCTGGGGCAGATTTAAGACTTGGGGTTTAATGGTTAAATAATCTCAAATTATAAAGAAAAAGCGAGACAAAATGAATATGTGTGTGCGCGCTGAGGCAGATTTAAGACTTGGAGTTCAATTGTTAAATAATCTCAAATTATAAAGAAAAAGTGAGACAAAACGAAGGCTTGAGTTGTTTTTGTTTAAAAAGACAAGGAAAAAAAAACCAAGATAACTATGTTGCCCAAAGGATTCAAACCCTTGCAGAGGACAGCAAAGCTTAACAGGTTTCCCCTTTGCCACTATCAACAGACCATTTTTATGTTGGGTTCCAACTAAAAAATTATTAATATGTTTAGTGGATTCTCAATATAAATACAAGGTTTGTGCAAAAGTTACTCGTTTCCGGAAACCCACGCATATATCCTAACCCATTGTATGCCCGCAAGTGTGTCTGTGTGTGTATGTATATATGATATATGTATGTATGTACGTGTCTATTCCTGCTTCTGGCTTGACATATATCTCTGTTTCAAGAGAAAATAGTTTTTGTAATTGCTACTTACTGCTGATTTTCAATTAGAAGTGGCACTGCTGTGTGTGATTGAGTCTGTGTATGTACATCTCCTTTCCTGTTTAATTAGTGCCTGATAAGCCTAAATTATTAAAAGTTTTCTTTGTTGAGATTTTGGTTCTTTCCCAATGTGGATATTGCTGTTTTTAACTAGTTTTGATTTTCCCAGGATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAACACAAGACTTAATGAGGGCATTGCTAATGGTCTTGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAGTTTGAGGATGAAGACATTGATAAAATCTAATCTAAACTC-AAAATTGTTGTTACTGAGGTCTATCATATGCCTTGCTAATATTTCTGTGGCGTTCTTTTTCC-TTAAACATTGAAAAAGTATTTTTGTGTATCGTTTGAA-GTTGT-ATGATTGAGTT-TTG-TGCATCA</genome_strand>
        <mrna_strand>CAAGAACGCCCCCCTTTTTCCAATTTAGGGTTTCTTCCTTCTCCAATCGAAGTTTGAGAGAAGCGATTCAATCAAACAACCATGCCGAAGAACAAGGGTAAGGGAGGTAAGAACAGGAAGAGAGGAAAGAACGAAGCCGACGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGACGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGTTGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTAGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTCCGTGACTATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAATACAAGGCTTAATGAGGGCATTGCTAATGGTCTGGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAGTTTGAGGATGAAGACATCGACAAAATCTAATCTAAAGTCAAAAACTGTTGTTACTGAGGTCTATCATAGACCTTGTTAATATTTCTGTGGCGTTCTTTTTCCATGAAACATTGAAAAAGTATTTCGGAGTATCGTTTGAAGGTTGTCATGATTGAGTTCTTGTTGCGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E565760" ref_strand="+" ref_description="SGN-E565760 [4199]">
      <seq>caagaacgcccccctttttccaatttagggtttcttccttctccaatcgaagtttgagagaagcgattcaatcaaacaaccatgccgaagaacaagggtaagggaggtaagaacaggaagagaggaaagaacgaagccgacgatgagaaaagagagcttgttttcaaagaagacggacaggaatatgctcaggtccttcgtatgcttggtaatggacgttgtgaagctatgtgtattgatggaactaagcgtcttagtcacatacgtggtaagatgcataagaaagtatggatcgctgctggtgatatcatccttgttggcctccgtgactatcaggatgacaaagctgatgtgatcttgaagtacatgcctgatgaggccaggttattgaaggcatatggagagttaccagagaatacaaggcttaatgagggcattgctaatggtctggatgaagaggatgagggtgctggtgatgattacattgagtttgaggatgaagacatcgacaaaatctaaatctaaactcaaaaactgttgttactggaggtctatcatagaccttgctaatatttctgtggcgttctttttccatgaacattgaaacaacgtattttgtgtatcgtctgaacgttgtatgattgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="32790" stop="35173"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33090" g_stop="33424" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="336" r_length="336" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33425" i_stop="34567" i_length="1143">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34568" g_stop="34873" g_length="306"/>
          <reference_exon_boundary r_type="cDNA" r_start="337" r_stop="647" r_length="311" r_score="0.918"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E565760" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>641</cumulative_length_of_scored_exons>
        <coverage percentage="0.991" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E565760" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33090" e_stop="33424"/>
          <exon e_start="34568" e_stop="34873"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAGAACG-CCCCCTTTTTCCAATTTAGGGTTTCTTCCTTCTCCAATCGAAGTTTGAGAGAAGCGATTCAATCGAACAACCATGCCGAAGAACAAGGGTAAGGGAGGTAAGAACAGGAAGAGAGGAAAGAATGAAGCCGATGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTACGTGACTATCAGGCAAGATCCAATTTTTCCGACACCCTTTTTCTTCTATTTGTGTTTTTCGTATCTCTTTTCAGAATTTTGTTGTGTTTTTCTTTAAGAAATGAAATTTGGTATTACAAGCTTGAGGATCAAACACTCACCAACAAGGTGTAAATTTGTTGTGACAAAGATGTTTTCTTTTTGGTAGTTTCTATTCTGTAGTATAAAACTTTGATCACCTTGCGTATATGGATAAATGGGATGATGTACAAAAGTAGCCTACTCTGTATTAGCATAGTTGATTCCATATTTTTTGATTGAAGGGTATAAAAGGCCCCAGGATTTTAAGTTAATGGATATGGTGCACCTACTACTTTGTAGTGATATAAACATGCTATCTCAAGGAAGTAGCAAGTCTATGTATGATTGATTTGTGTATGAATATATGTGTGTGCTGGGGCAGATTTAAGACTTGGGGTTTAATGGTTAAATAATCTCAAATTATAAAGAAAAAGCGAGACAAAATGAATATGTGTGTGCGCGCTGAGGCAGATTTAAGACTTGGAGTTCAATTGTTAAATAATCTCAAATTATAAAGAAAAAGTGAGACAAAACGAAGGCTTGAGTTGTTTTTGTTTAAAAAGACAAGGAAAAAAAAACCAAGATAACTATGTTGCCCAAAGGATTCAAACCCTTGCAGAGGACAGCAAAGCTTAACAGGTTTCCCCTTTGCCACTATCAACAGACCATTTTTATGTTGGGTTCCAACTAAAAAATTATTAATATGTTTAGTGGATTCTCAATATAAATACAAGGTTTGTGCAAAAGTTACTCGTTTCCGGAAACCCACGCATATATCCTAACCCATTGTATGCCCGCAAGTGTGTCTGTGTGTGTATGTATATATGATATATGTATGTATGTACGTGTCTATTCCTGCTTCTGGCTTGACATATATCTCTGTTTCAAGAGAAAATAGTTTTTGTAATTGCTACTTACTGCTGATTTTCAATTAGAAGTGGCACTGCTGTGTGTGATTGAGTCTGTGTATGTACATCTCCTTTCCTGTTTAATTAGTGCCTGATAAGCCTAAATTATTAAAAGTTTTCTTTGTTGAGATTTTGGTTCTTTCCCAATGTGGATATTGCTGTTTTTAACTAGTTTTGATTTTCCCAGGATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAACACAAGACTTAATGAGGGCATTGCTAATGGTCTTGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAGTTTGAGGATGAAGACATTGATAAAATCT-AATCTAAACTC-AAAATTGTTGTTACT-GAGGTCTATCATATGCCTTGCTAATATTTCTGTGGCGTTCTTTTTCCTTAAACATTGAAA-AAGTATTTTTGTGTATCGTTTGAA-GTTGTATGATTGAGT</genome_strand>
        <mrna_strand>CAAGAACGCCCCCCTTTTTCCAATTTAGGGTTTCTTCCTTCTCCAATCGAAGTTTGAGAGAAGCGATTCAATCAAACAACCATGCCGAAGAACAAGGGTAAGGGAGGTAAGAACAGGAAGAGAGGAAAGAACGAAGCCGACGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGACGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGTTGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTAGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTCCGTGACTATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAATACAAGGCTTAATGAGGGCATTGCTAATGGTCTGGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAGTTTGAGGATGAAGACATCGACAAAATCTAAATCTAAACTCAAAAACTGTTGTTACTGGAGGTCTATCATAGACCTTGCTAATATTTCTGTGGCGTTCTTTTTCCATGAACATTGAAACAACGTATTTTGTGTATCGTCTGAACGTTGTATGATTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348979" ref_strand="+" ref_description="SGN-E348979 [cTOF-29-D21]">
      <seq>aagaacgccccctttttccaatttagggtttcttccttctccaatcgaagtttgagagaagcgattcaatcgaacaaccatgccgaagaacaagggtaagggaggtaagaacaggaagagaggaaagaatgaagccgatgatgagaaaagagagcttgttttcaaagaagatggacaggaatatgctcaggtccttcgtatgcttggtaatggacgatgtgaagctatgtgtattgatggaactaagcgtctttgtcacatacgtggtaagatgcataagaaagtatggatcgctgctggtgatatcatccttgttggcctacgtgactatcaggatgacaaagctgatgtgatcttgaagtacatgcctgatgaggccaggttattgaaggcatatggagagttaccagagaacacaagacttaatgagggcattgctaatggtcttgatgaagaggatgagggtgctggtgatgattacattgagtttgaggatgaagacattgataaaatctaatctaaactcaaaattgttgttactgaggtctatcatatgccttgctaatatttctgtggcgttcttttttcttaaacattgaaaaagtatttttgtgtattcgttgaagttgtatgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="32791" stop="35170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33091" g_stop="33424" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="334" r_length="334" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33425" i_stop="34567" i_length="1143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34568" g_stop="34870" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="637" r_length="303" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E348979" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>637</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33091" e_stop="33424"/>
          <exon e_start="34568" e_stop="34870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACGCCCCCTTTTTCCAATTTAGGGTTTCTTCCTTCTCCAATCGAAGTTTGAGAGAAGCGATTCAATCGAACAACCATGCCGAAGAACAAGGGTAAGGGAGGTAAGAACAGGAAGAGAGGAAAGAATGAAGCCGATGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTACGTGACTATCAGGCAAGATCCAATTTTTCCGACACCCTTTTTCTTCTATTTGTGTTTTTCGTATCTCTTTTCAGAATTTTGTTGTGTTTTTCTTTAAGAAATGAAATTTGGTATTACAAGCTTGAGGATCAAACACTCACCAACAAGGTGTAAATTTGTTGTGACAAAGATGTTTTCTTTTTGGTAGTTTCTATTCTGTAGTATAAAACTTTGATCACCTTGCGTATATGGATAAATGGGATGATGTACAAAAGTAGCCTACTCTGTATTAGCATAGTTGATTCCATATTTTTTGATTGAAGGGTATAAAAGGCCCCAGGATTTTAAGTTAATGGATATGGTGCACCTACTACTTTGTAGTGATATAAACATGCTATCTCAAGGAAGTAGCAAGTCTATGTATGATTGATTTGTGTATGAATATATGTGTGTGCTGGGGCAGATTTAAGACTTGGGGTTTAATGGTTAAATAATCTCAAATTATAAAGAAAAAGCGAGACAAAATGAATATGTGTGTGCGCGCTGAGGCAGATTTAAGACTTGGAGTTCAATTGTTAAATAATCTCAAATTATAAAGAAAAAGTGAGACAAAACGAAGGCTTGAGTTGTTTTTGTTTAAAAAGACAAGGAAAAAAAAACCAAGATAACTATGTTGCCCAAAGGATTCAAACCCTTGCAGAGGACAGCAAAGCTTAACAGGTTTCCCCTTTGCCACTATCAACAGACCATTTTTATGTTGGGTTCCAACTAAAAAATTATTAATATGTTTAGTGGATTCTCAATATAAATACAAGGTTTGTGCAAAAGTTACTCGTTTCCGGAAACCCACGCATATATCCTAACCCATTGTATGCCCGCAAGTGTGTCTGTGTGTGTATGTATATATGATATATGTATGTATGTACGTGTCTATTCCTGCTTCTGGCTTGACATATATCTCTGTTTCAAGAGAAAATAGTTTTTGTAATTGCTACTTACTGCTGATTTTCAATTAGAAGTGGCACTGCTGTGTGTGATTGAGTCTGTGTATGTACATCTCCTTTCCTGTTTAATTAGTGCCTGATAAGCCTAAATTATTAAAAGTTTTCTTTGTTGAGATTTTGGTTCTTTCCCAATGTGGATATTGCTGTTTTTAACTAGTTTTGATTTTCCCAGGATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAACACAAGACTTAATGAGGGCATTGCTAATGGTCTTGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAGTTTGAGGATGAAGACATTGATAAAATCTAATCTAAACTCAAAATTGTTGTTACTGAGGTCTATCATATGCCTTGCTAATATTTCTGTGGCGTTCTTTTTCCTTAAACATTGAAAAAGTATTTTTGTGTATCGTTTGAAGTTGTATGATTG</genome_strand>
        <mrna_strand>AAGAACGCCCCCTTTTTCCAATTTAGGGTTTCTTCCTTCTCCAATCGAAGTTTGAGAGAAGCGATTCAATCGAACAACCATGCCGAAGAACAAGGGTAAGGGAGGTAAGAACAGGAAGAGAGGAAAGAATGAAGCCGATGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTACGTGACTATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAACACAAGACTTAATGAGGGCATTGCTAATGGTCTTGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAGTTTGAGGATGAAGACATTGATAAAATCTAATCTAAACTCAAAATTGTTGTTACTGAGGTCTATCATATGCCTTGCTAATATTTCTGTGGCGTTCTTTTTTCTTAAACATTGAAAAAGTATTTTTGTGTATTCGTTGAAGTTGTATGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E362260" ref_strand="+" ref_description="SGN-E362260 [cLPP-10-K20]">
      <seq>gaacgcccccttttccaatttagggtttcttccttctccaatcgaagtttgagagaagcgattcaatcaaacaaccatgccgaagaacaagggtaagggaggtaagaacaggaagagaggaaagaatgaagccgatgatgagaaaagagagcttgttttcaaagaagatggacaggaatatgctcaggtccttcgtatgcttggtaatggacgatgtgaagctatgtgtattgatggaactaagcgtctttgtcacatacgtggtaagatgcataagaaagtatggatcgctgctggtgatatcatccttgttggcctccgtgactatcaggatgacaaagctgatgtgatcttgaagtacatgcctgatgaggccaggttattgaaggcatatggagagttaccagagaacacgaggcttaatgagggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="32793" stop="34967"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33093" g_stop="33424" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33425" i_stop="34567" i_length="1143">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34568" g_stop="34667" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="431" r_length="100" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E362260" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362260" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33093" e_stop="33424"/>
          <exon e_start="34568" e_stop="34667"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACGCCCCCTTTTTCCAATTTAGGGTTTCTTCCTTCTCCAATCGAAGTTTGAGAGAAGCGATTCAATCGAACAACCATGCCGAAGAACAAGGGTAAGGGAGGTAAGAACAGGAAGAGAGGAAAGAATGAAGCCGATGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTACGTGACTATCAGGCAAGATCCAATTTTTCCGACACCCTTTTTCTTCTATTTGTGTTTTTCGTATCTCTTTTCAGAATTTTGTTGTGTTTTTCTTTAAGAAATGAAATTTGGTATTACAAGCTTGAGGATCAAACACTCACCAACAAGGTGTAAATTTGTTGTGACAAAGATGTTTTCTTTTTGGTAGTTTCTATTCTGTAGTATAAAACTTTGATCACCTTGCGTATATGGATAAATGGGATGATGTACAAAAGTAGCCTACTCTGTATTAGCATAGTTGATTCCATATTTTTTGATTGAAGGGTATAAAAGGCCCCAGGATTTTAAGTTAATGGATATGGTGCACCTACTACTTTGTAGTGATATAAACATGCTATCTCAAGGAAGTAGCAAGTCTATGTATGATTGATTTGTGTATGAATATATGTGTGTGCTGGGGCAGATTTAAGACTTGGGGTTTAATGGTTAAATAATCTCAAATTATAAAGAAAAAGCGAGACAAAATGAATATGTGTGTGCGCGCTGAGGCAGATTTAAGACTTGGAGTTCAATTGTTAAATAATCTCAAATTATAAAGAAAAAGTGAGACAAAACGAAGGCTTGAGTTGTTTTTGTTTAAAAAGACAAGGAAAAAAAAACCAAGATAACTATGTTGCCCAAAGGATTCAAACCCTTGCAGAGGACAGCAAAGCTTAACAGGTTTCCCCTTTGCCACTATCAACAGACCATTTTTATGTTGGGTTCCAACTAAAAAATTATTAATATGTTTAGTGGATTCTCAATATAAATACAAGGTTTGTGCAAAAGTTACTCGTTTCCGGAAACCCACGCATATATCCTAACCCATTGTATGCCCGCAAGTGTGTCTGTGTGTGTATGTATATATGATATATGTATGTATGTACGTGTCTATTCCTGCTTCTGGCTTGACATATATCTCTGTTTCAAGAGAAAATAGTTTTTGTAATTGCTACTTACTGCTGATTTTCAATTAGAAGTGGCACTGCTGTGTGTGATTGAGTCTGTGTATGTACATCTCCTTTCCTGTTTAATTAGTGCCTGATAAGCCTAAATTATTAAAAGTTTTCTTTGTTGAGATTTTGGTTCTTTCCCAATGTGGATATTGCTGTTTTTAACTAGTTTTGATTTTCCCAGGATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAACACAAGACTTAATGAGGGCA</genome_strand>
        <mrna_strand>GAACGCCCCC-TTTTCCAATTTAGGGTTTCTTCCTTCTCCAATCGAAGTTTGAGAGAAGCGATTCAATCAAACAACCATGCCGAAGAACAAGGGTAAGGGAGGTAAGAACAGGAAGAGAGGAAAGAATGAAGCCGATGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTCCGTGACTATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAACACGAGGCTTAATGAGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E280561" ref_strand="+" ref_description="SGN-E280561 [cLER-1-K2]">
      <seq>cgccccctttttccaatttagggtttcttccttctccaatcgaagtttgagagaagcgattcaatcgaacaaccatgccgaagaacaagggtaagggaggtaagaacaggaagagaggaaagaatgaagccgatgatgagaaaagagagcttgttttcaaagaagatggacaggaatatgctcaggtccttcgtatgcttggtaatggacgatgtgaagctatgtgtattgatggaactaagcgcctttgtcacatacgtggtaagatgcataagaaagtatggatcgctgctggtgatatcatccttgctggcctacgtgactatcaggatgacaaagctgatgtgatcttgaagtacatgcctgatgaggccaggttattgaaggcatatggagagttaccagagaacacaagacttaatgagggcattgctaaaggtcttgatgaagaggatgagggtgctggtgatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="32796" stop="35011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33096" g_stop="33424" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.994"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33425" i_stop="34567" i_length="1143">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34568" g_stop="34711" g_length="144"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="473" r_length="144" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E280561" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E280561" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33096" e_stop="33424"/>
          <exon e_start="34568" e_stop="34711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCCCCTTTTTCCAATTTAGGGTTTCTTCCTTCTCCAATCGAAGTTTGAGAGAAGCGATTCAATCGAACAACCATGCCGAAGAACAAGGGTAAGGGAGGTAAGAACAGGAAGAGAGGAAAGAATGAAGCCGATGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTACGTGACTATCAGGCAAGATCCAATTTTTCCGACACCCTTTTTCTTCTATTTGTGTTTTTCGTATCTCTTTTCAGAATTTTGTTGTGTTTTTCTTTAAGAAATGAAATTTGGTATTACAAGCTTGAGGATCAAACACTCACCAACAAGGTGTAAATTTGTTGTGACAAAGATGTTTTCTTTTTGGTAGTTTCTATTCTGTAGTATAAAACTTTGATCACCTTGCGTATATGGATAAATGGGATGATGTACAAAAGTAGCCTACTCTGTATTAGCATAGTTGATTCCATATTTTTTGATTGAAGGGTATAAAAGGCCCCAGGATTTTAAGTTAATGGATATGGTGCACCTACTACTTTGTAGTGATATAAACATGCTATCTCAAGGAAGTAGCAAGTCTATGTATGATTGATTTGTGTATGAATATATGTGTGTGCTGGGGCAGATTTAAGACTTGGGGTTTAATGGTTAAATAATCTCAAATTATAAAGAAAAAGCGAGACAAAATGAATATGTGTGTGCGCGCTGAGGCAGATTTAAGACTTGGAGTTCAATTGTTAAATAATCTCAAATTATAAAGAAAAAGTGAGACAAAACGAAGGCTTGAGTTGTTTTTGTTTAAAAAGACAAGGAAAAAAAAACCAAGATAACTATGTTGCCCAAAGGATTCAAACCCTTGCAGAGGACAGCAAAGCTTAACAGGTTTCCCCTTTGCCACTATCAACAGACCATTTTTATGTTGGGTTCCAACTAAAAAATTATTAATATGTTTAGTGGATTCTCAATATAAATACAAGGTTTGTGCAAAAGTTACTCGTTTCCGGAAACCCACGCATATATCCTAACCCATTGTATGCCCGCAAGTGTGTCTGTGTGTGTATGTATATATGATATATGTATGTATGTACGTGTCTATTCCTGCTTCTGGCTTGACATATATCTCTGTTTCAAGAGAAAATAGTTTTTGTAATTGCTACTTACTGCTGATTTTCAATTAGAAGTGGCACTGCTGTGTGTGATTGAGTCTGTGTATGTACATCTCCTTTCCTGTTTAATTAGTGCCTGATAAGCCTAAATTATTAAAAGTTTTCTTTGTTGAGATTTTGGTTCTTTCCCAATGTGGATATTGCTGTTTTTAACTAGTTTTGATTTTCCCAGGATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAACACAAGACTTAATGAGGGCATTGCTAATGGTCTTGATGAAGAGGATGAGGGTGCTGGTGATGAT</genome_strand>
        <mrna_strand>CGCCCCCTTTTTCCAATTTAGGGTTTCTTCCTTCTCCAATCGAAGTTTGAGAGAAGCGATTCAATCGAACAACCATGCCGAAGAACAAGGGTAAGGGAGGTAAGAACAGGAAGAGAGGAAAGAATGAAGCCGATGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAACTAAGCGCCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGCTGGCCTACGTGACTATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAACACAAGACTTAATGAGGGCATTGCTAAAGGTCTTGATGAAGAGGATGAGGGTGCTGGTGATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E466875" ref_strand="+" ref_description="SGN-E466875 [cPRO-26-I12]">
      <seq>cgcctccctttttccatttagggtttcttccttctccaatcgaagtttgagagaagcgattcaatcaaacaaccatgccgaagaacaagggtaagggaggtaagaacaggaagagaggaaagaatgaagccgacgatgagaaaagagaacttgttttcaaagaagatggacaggaatatgctcaggtccttcgtatgcttggtaatggacgttgtgaagctatgtgtattgatggaactaagcgtctttgtcacatacgtggtaagatgcataagaaagtatggatcgctgctggggatatcatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="32796" stop="33700"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33096" g_stop="33400" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.970"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E466875" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>305</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E466875" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33096" e_stop="33400"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCCCCTTTTTCCAATTTAGGGTTTCTTCCTTCTCCAATCGAAGTTTGAGAGAAGCGATTCAATCGAACAACCATGCCGAAGAACAAGGGTAAGGGAGGTAAGAACAGGAAGAGAGGAAAGAATGAAGCCGATGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATC</genome_strand>
        <mrna_strand>CGCCTCCCTTTTTCCATTTAGGGTTTCTTCCTTCTCCAATCGAAGTTTGAGAGAAGCGATTCAATCAAACAACCATGCCGAAGAACAAGGGTAAGGGAGGTAAGAACAGGAAGAGAGGAAAGAATGAAGCCGACGATGAGAAAAGAGAACTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGTTGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGGGATATCATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E361991" ref_strand="+" ref_description="SGN-E361991 [cLPP-11-F13]">
      <seq>ccttttccaatttagggtttcttccttctccaatcgaagtttgagagaagcgattcaatcaaacaaccatgccgaagaacaagggtaagggaggtaagaacaggaagagaggaaagaatgaagccgatgatgagaaaagagagcttgttttcaaagaagatggacaggaatatgctcaggtccttcgtatgcttggtaatggacgatgtgaagctatgtgtattgatggaactaagcgtctttgtcacatacgtggtaagatgcataagaaagtatggatcgctgctggtgatatcatccttgttggcctccgtgactatcaggatgacaaagctgatgtgatcttgaagtacatgcctgatgaggccaggttattgaaggcatatggagagttaccagagaacacgaggcttaatgagggcattgctaatggtcttgatgaaaaggatganggtgctggtgatgattacattgag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="32802" stop="35020"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33102" g_stop="33424" g_length="323"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="323" r_length="323" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33425" i_stop="34567" i_length="1143">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34568" g_stop="34720" g_length="153"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="476" r_length="153" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E361991" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>476</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E361991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33102" e_stop="33424"/>
          <exon e_start="34568" e_stop="34720"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTTCCAATTTAGGGTTTCTTCCTTCTCCAATCGAAGTTTGAGAGAAGCGATTCAATCGAACAACCATGCCGAAGAACAAGGGTAAGGGAGGTAAGAACAGGAAGAGAGGAAAGAATGAAGCCGATGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTACGTGACTATCAGGCAAGATCCAATTTTTCCGACACCCTTTTTCTTCTATTTGTGTTTTTCGTATCTCTTTTCAGAATTTTGTTGTGTTTTTCTTTAAGAAATGAAATTTGGTATTACAAGCTTGAGGATCAAACACTCACCAACAAGGTGTAAATTTGTTGTGACAAAGATGTTTTCTTTTTGGTAGTTTCTATTCTGTAGTATAAAACTTTGATCACCTTGCGTATATGGATAAATGGGATGATGTACAAAAGTAGCCTACTCTGTATTAGCATAGTTGATTCCATATTTTTTGATTGAAGGGTATAAAAGGCCCCAGGATTTTAAGTTAATGGATATGGTGCACCTACTACTTTGTAGTGATATAAACATGCTATCTCAAGGAAGTAGCAAGTCTATGTATGATTGATTTGTGTATGAATATATGTGTGTGCTGGGGCAGATTTAAGACTTGGGGTTTAATGGTTAAATAATCTCAAATTATAAAGAAAAAGCGAGACAAAATGAATATGTGTGTGCGCGCTGAGGCAGATTTAAGACTTGGAGTTCAATTGTTAAATAATCTCAAATTATAAAGAAAAAGTGAGACAAAACGAAGGCTTGAGTTGTTTTTGTTTAAAAAGACAAGGAAAAAAAAACCAAGATAACTATGTTGCCCAAAGGATTCAAACCCTTGCAGAGGACAGCAAAGCTTAACAGGTTTCCCCTTTGCCACTATCAACAGACCATTTTTATGTTGGGTTCCAACTAAAAAATTATTAATATGTTTAGTGGATTCTCAATATAAATACAAGGTTTGTGCAAAAGTTACTCGTTTCCGGAAACCCACGCATATATCCTAACCCATTGTATGCCCGCAAGTGTGTCTGTGTGTGTATGTATATATGATATATGTATGTATGTACGTGTCTATTCCTGCTTCTGGCTTGACATATATCTCTGTTTCAAGAGAAAATAGTTTTTGTAATTGCTACTTACTGCTGATTTTCAATTAGAAGTGGCACTGCTGTGTGTGATTGAGTCTGTGTATGTACATCTCCTTTCCTGTTTAATTAGTGCCTGATAAGCCTAAATTATTAAAAGTTTTCTTTGTTGAGATTTTGGTTCTTTCCCAATGTGGATATTGCTGTTTTTAACTAGTTTTGATTTTCCCAGGATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAACACAAGACTTAATGAGGGCATTGCTAATGGTCTTGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAG</genome_strand>
        <mrna_strand>CCTTTTCCAATTTAGGGTTTCTTCCTTCTCCAATCGAAGTTTGAGAGAAGCGATTCAATCAAACAACCATGCCGAAGAACAAGGGTAAGGGAGGTAAGAACAGGAAGAGAGGAAAGAATGAAGCCGATGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTCCGTGACTATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAACACGAGGCTTAATGAGGGCATTGCTAATGGTCTTGATGAAAAGGATGANGGTGCTGGTGATGATTACATTGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E406015" ref_strand="+" ref_description="SGN-E406015 [PPI-2-M8]">
      <seq>caatttagggtttcttccttctccaatcgaagtttgagagtagcgattcaatcaaacaaccatgcccgaagaacaagggtaagggaggtaagaaacaggaagagaggaaagaatgaagccgacgatgagaaaagagagcttgttttcaaagaagatggacaggaatatgctcaggtccttcgtatgcttggtaatggacgttgtgaagctatgtgtattgatggaactaagcgtctttgtcacatacgtggtaagatgcataagaaagtatggatcgctgctggtgatatcatccttgttggcctccgtgactatcaggatgacaaagctgatgtgatcttgaagtacatgcctgatgaggccaggttattgaaggcatatggagagttaccagagaacacaaggcttaatgagggcattgctaatggtcttgatgaagaggatgagggtgctggtgatgattacattgagtttgaggatgaagacattgacaaaatctgatctaaactcaaaactgttgttactgaggtctatcataggccttgctaatatttctgtggcgttctttttccataaacattgaaaaagtatttttgtgtatcgtttgaagttgtatgattgagttttgtgcatcgaagttctgtctgaaaatttgtgctttcatgaaatgaatgcaatattctggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="32809" stop="35235"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33109" g_stop="33424" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="318" r_length="318" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33425" i_stop="34567" i_length="1143">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34568" g_stop="34935" g_length="368"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="686" r_length="368" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E406015" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406015" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33109" e_stop="33424"/>
          <exon e_start="34568" e_stop="34935"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAATTTAGGGTTTCTTCCTTCTCCAATCGAAGTTTGAGAGAAGCGATTCAATCGAACAACCATG-CCGAAGAACAAGGGTAAGGGAGGTAAG-AACAGGAAGAGAGGAAAGAATGAAGCCGATGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTACGTGACTATCAGGCAAGATCCAATTTTTCCGACACCCTTTTTCTTCTATTTGTGTTTTTCGTATCTCTTTTCAGAATTTTGTTGTGTTTTTCTTTAAGAAATGAAATTTGGTATTACAAGCTTGAGGATCAAACACTCACCAACAAGGTGTAAATTTGTTGTGACAAAGATGTTTTCTTTTTGGTAGTTTCTATTCTGTAGTATAAAACTTTGATCACCTTGCGTATATGGATAAATGGGATGATGTACAAAAGTAGCCTACTCTGTATTAGCATAGTTGATTCCATATTTTTTGATTGAAGGGTATAAAAGGCCCCAGGATTTTAAGTTAATGGATATGGTGCACCTACTACTTTGTAGTGATATAAACATGCTATCTCAAGGAAGTAGCAAGTCTATGTATGATTGATTTGTGTATGAATATATGTGTGTGCTGGGGCAGATTTAAGACTTGGGGTTTAATGGTTAAATAATCTCAAATTATAAAGAAAAAGCGAGACAAAATGAATATGTGTGTGCGCGCTGAGGCAGATTTAAGACTTGGAGTTCAATTGTTAAATAATCTCAAATTATAAAGAAAAAGTGAGACAAAACGAAGGCTTGAGTTGTTTTTGTTTAAAAAGACAAGGAAAAAAAAACCAAGATAACTATGTTGCCCAAAGGATTCAAACCCTTGCAGAGGACAGCAAAGCTTAACAGGTTTCCCCTTTGCCACTATCAACAGACCATTTTTATGTTGGGTTCCAACTAAAAAATTATTAATATGTTTAGTGGATTCTCAATATAAATACAAGGTTTGTGCAAAAGTTACTCGTTTCCGGAAACCCACGCATATATCCTAACCCATTGTATGCCCGCAAGTGTGTCTGTGTGTGTATGTATATATGATATATGTATGTATGTACGTGTCTATTCCTGCTTCTGGCTTGACATATATCTCTGTTTCAAGAGAAAATAGTTTTTGTAATTGCTACTTACTGCTGATTTTCAATTAGAAGTGGCACTGCTGTGTGTGATTGAGTCTGTGTATGTACATCTCCTTTCCTGTTTAATTAGTGCCTGATAAGCCTAAATTATTAAAAGTTTTCTTTGTTGAGATTTTGGTTCTTTCCCAATGTGGATATTGCTGTTTTTAACTAGTTTTGATTTTCCCAGGATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAACACAAGACTTAATGAGGGCATTGCTAATGGTCTTGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAGTTTGAGGATGAAGACATTGATAAAATCTAATCTAAACTCAAAATTGTTGTTACTGAGGTCTATCATATGCCTTGCTAATATTTCTGTGGCGTTCTTTTTCCTTAAACATTGAAAAAGTATTTTTGTGTATCGTTTGAAGTTGTATGATTGAGTTTTGTGCATCAAAGTTCTGTCTGAAAATTTGTGCTTTCATGAAATGAATGCAATATTCTGGC</genome_strand>
        <mrna_strand>CAATTTAGGGTTTCTTCCTTCTCCAATCGAAGTTTGAGAGTAGCGATTCAATCAAACAACCATGCCCGAAGAACAAGGGTAAGGGAGGTAAGAAACAGGAAGAGAGGAAAGAATGAAGCCGACGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGTTGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTCCGTGACTATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAACACAAGGCTTAATGAGGGCATTGCTAATGGTCTTGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAGTTTGAGGATGAAGACATTGACAAAATCTGATCTAAACTCAAAACTGTTGTTACTGAGGTCTATCATAGGCCTTGCTAATATTTCTGTGGCGTTCTTTTTCCATAAACATTGAAAAAGTATTTTTGTGTATCGTTTGAAGTTGTATGATTGAGTTTTGTGCATCGAAGTTCTGTCTGAAAATTTGTGCTTTCATGAAATGAATGCAATATTCTGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E350851" ref_strand="+" ref_description="SGN-E350851 [cTOS-7-O3]">
      <seq>ttccttctccaatcgaagtttgagagaagcgattcaatcgaacaaccatgccgaagaacaagggtaagggaggtaagaacaggaagagaggaaagaatgaagccgatgatgagaaaagagagcttgttttcaaagaagatggacaggaatatgctcaggtccttcgtatgcttggtaatggacgatgtgaagctatgtgtattgatggaactaagcgtctttgtcacatacgtggtaagatgcataagaaagtatggatcgctgctggtgatatcatccttgttggcctacgtgactatcaggatgacaaagctgatgtgatcttgaagtacatgcctgatgaggccaggttattgaaggcatatggagagttaccagagaacacaagacttaatgagggcattgctaatggtcttgatgaanaggatganggtgctggtgatgattacattgagtttgaggatgaagacattgataaaatctaatctaaactcaaaattgttgttactgaagtctatcatatgccttgctaatatttctgtggcgttctttttccttaaacattgaaaaagtatttttgtgtatccgttgaagttgtatgattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="32823" stop="35170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33123" g_stop="33424" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="302" r_length="302" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33425" i_stop="34567" i_length="1143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34568" g_stop="34870" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="605" r_length="303" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E350851" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E350851" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33123" e_stop="33424"/>
          <exon e_start="34568" e_stop="34870"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTTCTCCAATCGAAGTTTGAGAGAAGCGATTCAATCGAACAACCATGCCGAAGAACAAGGGTAAGGGAGGTAAGAACAGGAAGAGAGGAAAGAATGAAGCCGATGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTACGTGACTATCAGGCAAGATCCAATTTTTCCGACACCCTTTTTCTTCTATTTGTGTTTTTCGTATCTCTTTTCAGAATTTTGTTGTGTTTTTCTTTAAGAAATGAAATTTGGTATTACAAGCTTGAGGATCAAACACTCACCAACAAGGTGTAAATTTGTTGTGACAAAGATGTTTTCTTTTTGGTAGTTTCTATTCTGTAGTATAAAACTTTGATCACCTTGCGTATATGGATAAATGGGATGATGTACAAAAGTAGCCTACTCTGTATTAGCATAGTTGATTCCATATTTTTTGATTGAAGGGTATAAAAGGCCCCAGGATTTTAAGTTAATGGATATGGTGCACCTACTACTTTGTAGTGATATAAACATGCTATCTCAAGGAAGTAGCAAGTCTATGTATGATTGATTTGTGTATGAATATATGTGTGTGCTGGGGCAGATTTAAGACTTGGGGTTTAATGGTTAAATAATCTCAAATTATAAAGAAAAAGCGAGACAAAATGAATATGTGTGTGCGCGCTGAGGCAGATTTAAGACTTGGAGTTCAATTGTTAAATAATCTCAAATTATAAAGAAAAAGTGAGACAAAACGAAGGCTTGAGTTGTTTTTGTTTAAAAAGACAAGGAAAAAAAAACCAAGATAACTATGTTGCCCAAAGGATTCAAACCCTTGCAGAGGACAGCAAAGCTTAACAGGTTTCCCCTTTGCCACTATCAACAGACCATTTTTATGTTGGGTTCCAACTAAAAAATTATTAATATGTTTAGTGGATTCTCAATATAAATACAAGGTTTGTGCAAAAGTTACTCGTTTCCGGAAACCCACGCATATATCCTAACCCATTGTATGCCCGCAAGTGTGTCTGTGTGTGTATGTATATATGATATATGTATGTATGTACGTGTCTATTCCTGCTTCTGGCTTGACATATATCTCTGTTTCAAGAGAAAATAGTTTTTGTAATTGCTACTTACTGCTGATTTTCAATTAGAAGTGGCACTGCTGTGTGTGATTGAGTCTGTGTATGTACATCTCCTTTCCTGTTTAATTAGTGCCTGATAAGCCTAAATTATTAAAAGTTTTCTTTGTTGAGATTTTGGTTCTTTCCCAATGTGGATATTGCTGTTTTTAACTAGTTTTGATTTTCCCAGGATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAACACAAGACTTAATGAGGGCATTGCTAATGGTCTTGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAGTTTGAGGATGAAGACATTGATAAAATCTAATCTAAACTCAAAATTGTTGTTACTGAGGTCTATCATATGCCTTGCTAATATTTCTGTGGCGTTCTTTTTCCTTAAACATTGAAAAAGTATTTTTGTGTATCGTTTGAAGTTGTATGATTG</genome_strand>
        <mrna_strand>TTCCTTCTCCAATCGAAGTTTGAGAGAAGCGATTCAATCGAACAACCATGCCGAAGAACAAGGGTAAGGGAGGTAAGAACAGGAAGAGAGGAAAGAATGAAGCCGATGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTACGTGACTATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAACACAAGACTTAATGAGGGCATTGCTAATGGTCTTGATGAANAGGATGANGGTGCTGGTGATGATTACATTGAGTTTGAGGATGAAGACATTGATAAAATCTAATCTAAACTCAAAATTGTTGTTACTGAAGTCTATCATATGCCTTGCTAATATTTCTGTGGCGTTCTTTTTCCTTAAACATTGAAAAAGTATTTTTGTGTATCCGTTGAAGTTGTATGATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E694634" ref_strand="+" ref_description="SGN-E694634 [LH_Ea04G24](-)">
      <seq>cgggggggggattcaatcaaacaaccatgccgaagaacaagggtaagggagggtaagaccaggaagagaggaaagaatgaagccgatgttgagaaaagagagtttgttttcaaagaagatggacaggaatatgcccaggtccttcgtatgcttggtaatggacgatgggaagctatgtgtattgatggaagtaagggtttttgtcccatacgtggtaagatgcataagaaagtatggatcgcggctggggatatcatccttgttggcctccgtgactatcaggatgacaaagctgaggtgatcttgaagtacatgcctgatgaggccaggttattgaaggcatatggagggtttccagagaacccaagacttaatgagggcattgttaatggttttgatgaagaggatgagggtgctggtgatgattacattgagtttggggatgaagacattgacaaaatttaatttaaactcaaaactgctgttactgaggtttttcatatcccttgctaatatttctggggcgttttttttccataaccattgaaaaagtatttttgtgtatcgtttgaagtaggaggattgagttttgggcatcaaagttctgtcggcaaaaaagggctttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="32846" stop="35200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33144" g_stop="33424" g_length="281"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="282" r_length="282" r_score="0.925"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33425" i_stop="34567" i_length="1143">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.994" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34568" g_stop="34899" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="283" r_stop="614" r_length="332" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="626" polyA_stop="660"/>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E694634" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>613</cumulative_length_of_scored_exons>
        <coverage percentage="0.929" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E694634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33144" e_stop="33424"/>
          <exon e_start="34568" e_stop="34899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGAAGCGATTCAATCGAACAACCATGCCGAAGAACAAGGGTAAGGGA-GGTAAGAACAGGAAGAGAGGAAAGAATGAAGCCGATGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTACGTGACTATCAGGCAAGATCCAATTTTTCCGACACCCTTTTTCTTCTATTTGTGTTTTTCGTATCTCTTTTCAGAATTTTGTTGTGTTTTTCTTTAAGAAATGAAATTTGGTATTACAAGCTTGAGGATCAAACACTCACCAACAAGGTGTAAATTTGTTGTGACAAAGATGTTTTCTTTTTGGTAGTTTCTATTCTGTAGTATAAAACTTTGATCACCTTGCGTATATGGATAAATGGGATGATGTACAAAAGTAGCCTACTCTGTATTAGCATAGTTGATTCCATATTTTTTGATTGAAGGGTATAAAAGGCCCCAGGATTTTAAGTTAATGGATATGGTGCACCTACTACTTTGTAGTGATATAAACATGCTATCTCAAGGAAGTAGCAAGTCTATGTATGATTGATTTGTGTATGAATATATGTGTGTGCTGGGGCAGATTTAAGACTTGGGGTTTAATGGTTAAATAATCTCAAATTATAAAGAAAAAGCGAGACAAAATGAATATGTGTGTGCGCGCTGAGGCAGATTTAAGACTTGGAGTTCAATTGTTAAATAATCTCAAATTATAAAGAAAAAGTGAGACAAAACGAAGGCTTGAGTTGTTTTTGTTTAAAAAGACAAGGAAAAAAAAACCAAGATAACTATGTTGCCCAAAGGATTCAAACCCTTGCAGAGGACAGCAAAGCTTAACAGGTTTCCCCTTTGCCACTATCAACAGACCATTTTTATGTTGGGTTCCAACTAAAAAATTATTAATATGTTTAGTGGATTCTCAATATAAATACAAGGTTTGTGCAAAAGTTACTCGTTTCCGGAAACCCACGCATATATCCTAACCCATTGTATGCCCGCAAGTGTGTCTGTGTGTGTATGTATATATGATATATGTATGTATGTACGTGTCTATTCCTGCTTCTGGCTTGACATATATCTCTGTTTCAAGAGAAAATAGTTTTTGTAATTGCTACTTACTGCTGATTTTCAATTAGAAGTGGCACTGCTGTGTGTGATTGAGTCTGTGTATGTACATCTCCTTTCCTGTTTAATTAGTGCCTGATAAGCCTAAATTATTAAAAGTTTTCTTTGTTGAGATTTTGGTTCTTTCCCAATGTGGATATTGCTGTTTTTAACTAGTTTTGATTTTCCCAGGATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAACACAAGACTTAATGAGGGCATTGCTAATGGTCTTGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAGTTTGAGGATGAAGACATTGATAAAATCTAATCTAAACTCAAAATTGTTGTTACTGAGGTCTATCATATGCCTTGCTAATATTTCTGTGGCGTTCTTTTTCCTTAAACATTGAAAAAGTATTTTTGTGTATCGTTTGAAGTTGTATGATTGAGTTTTGTGCATCAAAGTTCTGTCTGAAA</genome_strand>
        <mrna_strand>CGGGGGGGGGATTCAATCAAACAACCATGCCGAAGAACAAGGGTAAGGGAGGGTAAGACCAGGAAGAGAGGAAAGAATGAAGCCGATGTTGAGAAAAGAGAGTTTGTTTTCAAAGAAGATGGACAGGAATATGCCCAGGTCCTTCGTATGCTTGGTAATGGACGATGGGAAGCTATGTGTATTGATGGAAGTAAGGGTTTTTGTCCCATACGTGGTAAGATGCATAAGAAAGTATGGATCGCGGCTGGGGATATCATCCTTGTTGGCCTCCGTGACTATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAAAGCTGAGGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGGGTTTCCAGAGAACCCAAGACTTAATGAGGGCATTGTTAATGGTTTTGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAGTTTGGGGATGAAGACATTGACAAAATTTAATTTAAACTCAAAACTGCTGTTACTGAGGTTTTTCATATCCCTTGCTAATATTTCTGGGGCGTTTTTTTTCCATAACCATTGAAAAAGTATTTTTGTGTATCGTTTGAAGTAGGAGGATTGAGTTTTGGGCATCAAAGTTCTGTCGGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E690794" ref_strand="+" ref_description="SGN-E690794 [LH_Ea04G24]">
      <seq>catgtaagattcaatcaaacaaccatgccgaagaacaaggccttgggaggtaagaacaggaagagaggaaagaatgaagccgatgatgagaaaagagagcttgttttcaaagaagatggacaggaatatgcccaggtccttcgtatgcttggtaatggacgatgtgaagctatgtgtattgatggaactaagcgtctttgtcacatacgtggtaagatgcataagaaagtatggatcgctgctggtgatatcatccttgttggcctccgtgactatcaggatgacaaagctgatgtgatcttgaagtacatgcctgatgaggccaggttattgaaggcatatggagagttaccagagaacacaagacttaatgagggcattgctaatggtcttgatgaagaggatgagggtgctggtgatgattacattgagtttgaggatgaagacattgacaaaatctaatctaaactcaaaactgctgttactgaggtctatcatatgccttgctaatatttctgtggcgttctttttccataaacattgaaaaagtatttttgtgtatcgtttgaagttgtatgattgagttttgtgcatcaaagttctgtctgaaaatttgtgctttaaacccaaaaagcagaatgacacaacataaatataaaacaagccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="32853" stop="35212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33146" g_stop="33424" g_length="279"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="279" r_length="279" r_score="0.953"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33425" i_stop="34567" i_length="1143">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34568" g_stop="34911" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="623" r_length="344" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E690794" ref_strand="+">
        <total_alignment_score>0.971</total_alignment_score>
        <cumulative_length_of_scored_exons>623</cumulative_length_of_scored_exons>
        <coverage percentage="0.934" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E690794" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33146" e_stop="33424"/>
          <exon e_start="34568" e_stop="34911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAAGCGATTCAATCGAACAACCATGCCGAAGAACAAGGGTAAGGGAGGTAAGAACAGGAAGAGAGGAAAGAATGAAGCCGATGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTACGTGACTATCAGGCAAGATCCAATTTTTCCGACACCCTTTTTCTTCTATTTGTGTTTTTCGTATCTCTTTTCAGAATTTTGTTGTGTTTTTCTTTAAGAAATGAAATTTGGTATTACAAGCTTGAGGATCAAACACTCACCAACAAGGTGTAAATTTGTTGTGACAAAGATGTTTTCTTTTTGGTAGTTTCTATTCTGTAGTATAAAACTTTGATCACCTTGCGTATATGGATAAATGGGATGATGTACAAAAGTAGCCTACTCTGTATTAGCATAGTTGATTCCATATTTTTTGATTGAAGGGTATAAAAGGCCCCAGGATTTTAAGTTAATGGATATGGTGCACCTACTACTTTGTAGTGATATAAACATGCTATCTCAAGGAAGTAGCAAGTCTATGTATGATTGATTTGTGTATGAATATATGTGTGTGCTGGGGCAGATTTAAGACTTGGGGTTTAATGGTTAAATAATCTCAAATTATAAAGAAAAAGCGAGACAAAATGAATATGTGTGTGCGCGCTGAGGCAGATTTAAGACTTGGAGTTCAATTGTTAAATAATCTCAAATTATAAAGAAAAAGTGAGACAAAACGAAGGCTTGAGTTGTTTTTGTTTAAAAAGACAAGGAAAAAAAAACCAAGATAACTATGTTGCCCAAAGGATTCAAACCCTTGCAGAGGACAGCAAAGCTTAACAGGTTTCCCCTTTGCCACTATCAACAGACCATTTTTATGTTGGGTTCCAACTAAAAAATTATTAATATGTTTAGTGGATTCTCAATATAAATACAAGGTTTGTGCAAAAGTTACTCGTTTCCGGAAACCCACGCATATATCCTAACCCATTGTATGCCCGCAAGTGTGTCTGTGTGTGTATGTATATATGATATATGTATGTATGTACGTGTCTATTCCTGCTTCTGGCTTGACATATATCTCTGTTTCAAGAGAAAATAGTTTTTGTAATTGCTACTTACTGCTGATTTTCAATTAGAAGTGGCACTGCTGTGTGTGATTGAGTCTGTGTATGTACATCTCCTTTCCTGTTTAATTAGTGCCTGATAAGCCTAAATTATTAAAAGTTTTCTTTGTTGAGATTTTGGTTCTTTCCCAATGTGGATATTGCTGTTTTTAACTAGTTTTGATTTTCCCAGGATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAACACAAGACTTAATGAGGGCATTGCTAATGGTCTTGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAGTTTGAGGATGAAGACATTGATAAAATCTAATCTAAACTCAAAATTGTTGTTACTGAGGTCTATCATATGCCTTGCTAATATTTCTGTGGCGTTCTTTTTCCTTAAACATTGAAAAAGTATTTTTGTGTATCGTTTGAAGTTGTATGATTGAGTTTTGTGCATCAAAGTTCTGTCTGAAAATTTGTGCTTTC</genome_strand>
        <mrna_strand>CATGTAAGATTCAATCAAACAACCATGCCGAAGAACAAGGCCTTGGGAGGTAAGAACAGGAAGAGAGGAAAGAATGAAGCCGATGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCCCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTCCGTGACTATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAACACAAGACTTAATGAGGGCATTGCTAATGGTCTTGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAGTTTGAGGATGAAGACATTGACAAAATCTAATCTAAACTCAAAACTGCTGTTACTGAGGTCTATCATATGCCTTGCTAATATTTCTGTGGCGTTCTTTTTCCATAAACATTGAAAAAGTATTTTTGTGTATCGTTTGAAGTTGTATGATTGAGTTTTGTGCATCAAAGTTCTGTCTGAAAATTTGTGCTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282374" ref_strand="+" ref_description="SGN-E282374 [cLER-18-K16]">
      <seq>gccttgccgaaaaacacgggtgaggcaggtgagaacacgactagaggaaagaatgaagccgatgatgagaaaagagagcttgttttcaaagaagatggacaggaatatgctcaggtccttcgtatgcttggtaatggacgatgtgaagctatgtgtattgatggaactaagcgtctttgtcacatacgtggtaagatgcataagaaagtatggatcgctgctggtgatatcatccttgttggcctacgtgactatcaggatgacaaagctgatgtgatcttgaagtacatgcctgatgaggccaggttattgaaggcatatggagagttaccagagaacacacgacttaatgagggcattgctcatggtcttgatgaagaggatgagggtgctggtgatgattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="32868" stop="35014"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33167" g_stop="33424" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="258" r_length="258" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33425" i_stop="34567" i_length="1143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34568" g_stop="34714" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="259" r_stop="405" r_length="147" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E282374" ref_strand="+">
        <total_alignment_score>0.970</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282374" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33167" e_stop="33424"/>
          <exon e_start="34568" e_stop="34714"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCATGCCGAAGAACAAGGGTAAGGGAGGTAAGAACAGGAAGAGAGGAAAGAATGAAGCCGATGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTACGTGACTATCAGGCAAGATCCAATTTTTCCGACACCCTTTTTCTTCTATTTGTGTTTTTCGTATCTCTTTTCAGAATTTTGTTGTGTTTTTCTTTAAGAAATGAAATTTGGTATTACAAGCTTGAGGATCAAACACTCACCAACAAGGTGTAAATTTGTTGTGACAAAGATGTTTTCTTTTTGGTAGTTTCTATTCTGTAGTATAAAACTTTGATCACCTTGCGTATATGGATAAATGGGATGATGTACAAAAGTAGCCTACTCTGTATTAGCATAGTTGATTCCATATTTTTTGATTGAAGGGTATAAAAGGCCCCAGGATTTTAAGTTAATGGATATGGTGCACCTACTACTTTGTAGTGATATAAACATGCTATCTCAAGGAAGTAGCAAGTCTATGTATGATTGATTTGTGTATGAATATATGTGTGTGCTGGGGCAGATTTAAGACTTGGGGTTTAATGGTTAAATAATCTCAAATTATAAAGAAAAAGCGAGACAAAATGAATATGTGTGTGCGCGCTGAGGCAGATTTAAGACTTGGAGTTCAATTGTTAAATAATCTCAAATTATAAAGAAAAAGTGAGACAAAACGAAGGCTTGAGTTGTTTTTGTTTAAAAAGACAAGGAAAAAAAAACCAAGATAACTATGTTGCCCAAAGGATTCAAACCCTTGCAGAGGACAGCAAAGCTTAACAGGTTTCCCCTTTGCCACTATCAACAGACCATTTTTATGTTGGGTTCCAACTAAAAAATTATTAATATGTTTAGTGGATTCTCAATATAAATACAAGGTTTGTGCAAAAGTTACTCGTTTCCGGAAACCCACGCATATATCCTAACCCATTGTATGCCCGCAAGTGTGTCTGTGTGTGTATGTATATATGATATATGTATGTATGTACGTGTCTATTCCTGCTTCTGGCTTGACATATATCTCTGTTTCAAGAGAAAATAGTTTTTGTAATTGCTACTTACTGCTGATTTTCAATTAGAAGTGGCACTGCTGTGTGTGATTGAGTCTGTGTATGTACATCTCCTTTCCTGTTTAATTAGTGCCTGATAAGCCTAAATTATTAAAAGTTTTCTTTGTTGAGATTTTGGTTCTTTCCCAATGTGGATATTGCTGTTTTTAACTAGTTTTGATTTTCCCAGGATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAACACAAGACTTAATGAGGGCATTGCTAATGGTCTTGATGAAGAGGATGAGGGTGCTGGTGATGATTAC</genome_strand>
        <mrna_strand>GCCTTGCCGAAAAACACGGGTGAGGCAGGTGAGAACACGACTAGAGGAAAGAATGAAGCCGATGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTACGTGACTATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAACACACGACTTAATGAGGGCATTGCTCATGGTCTTGATGAAGAGGATGAGGGTGCTGGTGATGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E558268" ref_strand="+" ref_description="SGN-E558268 [17580]">
      <seq>ggaggtaagaacaggaagagaggaaagacgaagccgacgatgagaaaagagagcttgttttcaaagaagacggacaggaatatgctcaggtccttcgtatgcttggtaatggacgttgtgaagctatgtgtattgatggaactaagcgtcttagtcacatacgtggtaagatgcataagaaagtatggatcgctgctggtgatatcatccttgttggcctccgtgactatcaggatgacaaagctgatgtgatcttgaagtacatgcctgatgaggccaggttattgaaggcatatggagagttaccagagaatacaaggcttaatgagggcattgctaatggtctggatgaagaggatgagggtgctggtgatgattacattgagtttgaggatgaagacatcgacaaaatctaatctaaactcaaaaactgttgttactgaggtctatcatagaccttgctaatatttctgtggcgttctttttccatgaacattgaaaaagtatttttgtgtatcgtttgaagttgtatgattgagtcttgtgcgtcgaagttctgtctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="32891" stop="35196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33191" g_stop="33424" g_length="234"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="233" r_length="233" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33425" i_stop="34567" i_length="1143">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34568" g_stop="34896" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="563" r_length="330" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E558268" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>563</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E558268" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33191" e_stop="33424"/>
          <exon e_start="34568" e_stop="34896"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAGGTAAGAACAGGAAGAGAGGAAAGAATGAAGCCGATGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTACGTGACTATCAGGCAAGATCCAATTTTTCCGACACCCTTTTTCTTCTATTTGTGTTTTTCGTATCTCTTTTCAGAATTTTGTTGTGTTTTTCTTTAAGAAATGAAATTTGGTATTACAAGCTTGAGGATCAAACACTCACCAACAAGGTGTAAATTTGTTGTGACAAAGATGTTTTCTTTTTGGTAGTTTCTATTCTGTAGTATAAAACTTTGATCACCTTGCGTATATGGATAAATGGGATGATGTACAAAAGTAGCCTACTCTGTATTAGCATAGTTGATTCCATATTTTTTGATTGAAGGGTATAAAAGGCCCCAGGATTTTAAGTTAATGGATATGGTGCACCTACTACTTTGTAGTGATATAAACATGCTATCTCAAGGAAGTAGCAAGTCTATGTATGATTGATTTGTGTATGAATATATGTGTGTGCTGGGGCAGATTTAAGACTTGGGGTTTAATGGTTAAATAATCTCAAATTATAAAGAAAAAGCGAGACAAAATGAATATGTGTGTGCGCGCTGAGGCAGATTTAAGACTTGGAGTTCAATTGTTAAATAATCTCAAATTATAAAGAAAAAGTGAGACAAAACGAAGGCTTGAGTTGTTTTTGTTTAAAAAGACAAGGAAAAAAAAACCAAGATAACTATGTTGCCCAAAGGATTCAAACCCTTGCAGAGGACAGCAAAGCTTAACAGGTTTCCCCTTTGCCACTATCAACAGACCATTTTTATGTTGGGTTCCAACTAAAAAATTATTAATATGTTTAGTGGATTCTCAATATAAATACAAGGTTTGTGCAAAAGTTACTCGTTTCCGGAAACCCACGCATATATCCTAACCCATTGTATGCCCGCAAGTGTGTCTGTGTGTGTATGTATATATGATATATGTATGTATGTACGTGTCTATTCCTGCTTCTGGCTTGACATATATCTCTGTTTCAAGAGAAAATAGTTTTTGTAATTGCTACTTACTGCTGATTTTCAATTAGAAGTGGCACTGCTGTGTGTGATTGAGTCTGTGTATGTACATCTCCTTTCCTGTTTAATTAGTGCCTGATAAGCCTAAATTATTAAAAGTTTTCTTTGTTGAGATTTTGGTTCTTTCCCAATGTGGATATTGCTGTTTTTAACTAGTTTTGATTTTCCCAGGATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAACACAAGACTTAATGAGGGCATTGCTAATGGTCTTGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAGTTTGAGGATGAAGACATTGATAAAATCTAATCTAAACTC-AAAATTGTTGTTACTGAGGTCTATCATATGCCTTGCTAATATTTCTGTGGCGTTCTTTTTCCTTAAACATTGAAAAAGTATTTTTGTGTATCGTTTGAAGTTGTATGATTGAGTTTTGTGCATCAAAGTTCTGTCTG</genome_strand>
        <mrna_strand>GGAGGTAAGAACAGGAAGAGAGGAAAG-ACGAAGCCGACGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGACGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGTTGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTAGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTCCGTGACTATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAATACAAGGCTTAATGAGGGCATTGCTAATGGTCTGGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAGTTTGAGGATGAAGACATCGACAAAATCTAATCTAAACTCAAAAACTGTTGTTACTGAGGTCTATCATAGACCTTGCTAATATTTCTGTGGCGTTCTTTTTCCATGAACATTGAAAAAGTATTTTTGTGTATCGTTTGAAGTTGTATGATTGAGTCTTGTGCGTCGAAGTTCTGTCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291789" ref_strand="+" ref_description="SGN-E291789 [cLET-7-G9]">
      <seq>aaaagagagcttgttttcaaagatgatggacatgaatatgctcaggtccttcgtatgcttggtaatggacgatgtgaagctatgtgtattgatggaactaagcgtctttgtcacatacgtggtaagatgcataagaaagtatggatcgcttgncnttgggnggggcgatatcatccttgttggcctacgtgactatcaggatgacaaagctgatgtgatcttgaagtacatgcctgatgaggccaggttattgaaggcatatggagagttaccagagaacacaagacttaatgagggcattgctaatggtcttgatgaagaggatgagggtgctggtgatgattacattgagtttgaggatgaagacattgataaaatctaatctaaactcaaaattgttgttactgaggtctatcatatgccttgctaatatttctgtggcgttctttttccttaaacattgaaaaagtatttttgtgtatcgtttgaagttgtatgattgagttttgtgcatcaaagttctgtctgaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="32936" stop="35200"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33236" g_stop="33424" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="199" r_length="199" r_score="0.878"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33425" i_stop="34567" i_length="1143">
            <donor d_prob="0.999" d_score="0.47"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34568" g_stop="34907" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="200" r_stop="539" r_length="340" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E291789" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>529</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291789" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33236" e_stop="33424"/>
          <exon e_start="34568" e_stop="34907"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGC-TG-C--T-GGT-----GATATCATCCTTGTTGGCCTACGTGACTATCAGGCAAGATCCAATTTTTCCGACACCCTTTTTCTTCTATTTGTGTTTTTCGTATCTCTTTTCAGAATTTTGTTGTGTTTTTCTTTAAGAAATGAAATTTGGTATTACAAGCTTGAGGATCAAACACTCACCAACAAGGTGTAAATTTGTTGTGACAAAGATGTTTTCTTTTTGGTAGTTTCTATTCTGTAGTATAAAACTTTGATCACCTTGCGTATATGGATAAATGGGATGATGTACAAAAGTAGCCTACTCTGTATTAGCATAGTTGATTCCATATTTTTTGATTGAAGGGTATAAAAGGCCCCAGGATTTTAAGTTAATGGATATGGTGCACCTACTACTTTGTAGTGATATAAACATGCTATCTCAAGGAAGTAGCAAGTCTATGTATGATTGATTTGTGTATGAATATATGTGTGTGCTGGGGCAGATTTAAGACTTGGGGTTTAATGGTTAAATAATCTCAAATTATAAAGAAAAAGCGAGACAAAATGAATATGTGTGTGCGCGCTGAGGCAGATTTAAGACTTGGAGTTCAATTGTTAAATAATCTCAAATTATAAAGAAAAAGTGAGACAAAACGAAGGCTTGAGTTGTTTTTGTTTAAAAAGACAAGGAAAAAAAAACCAAGATAACTATGTTGCCCAAAGGATTCAAACCCTTGCAGAGGACAGCAAAGCTTAACAGGTTTCCCCTTTGCCACTATCAACAGACCATTTTTATGTTGGGTTCCAACTAAAAAATTATTAATATGTTTAGTGGATTCTCAATATAAATACAAGGTTTGTGCAAAAGTTACTCGTTTCCGGAAACCCACGCATATATCCTAACCCATTGTATGCCCGCAAGTGTGTCTGTGTGTGTATGTATATATGATATATGTATGTATGTACGTGTCTATTCCTGCTTCTGGCTTGACATATATCTCTGTTTCAAGAGAAAATAGTTTTTGTAATTGCTACTTACTGCTGATTTTCAATTAGAAGTGGCACTGCTGTGTGTGATTGAGTCTGTGTATGTACATCTCCTTTCCTGTTTAATTAGTGCCTGATAAGCCTAAATTATTAAAAGTTTTCTTTGTTGAGATTTTGGTTCTTTCCCAATGTGGATATTGCTGTTTTTAACTAGTTTTGATTTTCCCAGGATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAACACAAGACTTAATGAGGGCATTGCTAATGGTCTTGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAGTTTGAGGATGAAGACATTGATAAAATCTAATCTAAACTCAAAATTGTTGTTACTGAGGTCTATCATATGCCTTGCTAATATTTCTGTGGCGTTCTTTTTCCTTAAACATTGAAAAAGTATTTTTGTGTATCGTTTGAAGTTGTATGATTGAGTTTTGTGCATCAAAGTTCTGTCTGAAAATTTGTGC</genome_strand>
        <mrna_strand>AAAAGAGAGCTTGTTTTCAAAGATGATGGACATGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTTGNCNTTGGGNGGGGCGATATCATCCTTGTTGGCCTACGTGACTATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAACACAAGACTTAATGAGGGCATTGCTAATGGTCTTGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAGTTTGAGGATGAAGACATTGATAAAATCTAATCTAAACTCAAAATTGTTGTTACTGAGGTCTATCATATGCCTTGCTAATATTTCTGTGGCGTTCTTTTTCCTTAAACATTGAAAAAGTATTTTTGTGTATCGTTTGAAGTTGTATGATTGAGTTTTGTGCATCAAAGTTCTGTCTGAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E290697" ref_strand="+" ref_description="SGN-E290697 [cLET-10-C12]">
      <seq>aaaagagagcttgttttcaaagaagatggacaggaatatgctcaggtccttcgtatgcttggtaatggacgatgtgaagctatgtgtattgatggaactaagcgtctttgtcacatacgtggtaagatgcataagaaagtatggatcgctgctggtgatatcatccttgttggcctacgtgactatcaggatgacaaagctgatgtgatcttgaagtacatgcctgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="32936" stop="34906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33236" g_stop="33424" g_length="189"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="189" r_length="189" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33425" i_stop="34567" i_length="1143">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.994" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34568" g_stop="34606" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="190" r_stop="228" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E290697" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>228</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E290697" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="33236" e_stop="33424"/>
          <exon e_start="34568" e_stop="34606"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTACGTGACTATCAGGCAAGATCCAATTTTTCCGACACCCTTTTTCTTCTATTTGTGTTTTTCGTATCTCTTTTCAGAATTTTGTTGTGTTTTTCTTTAAGAAATGAAATTTGGTATTACAAGCTTGAGGATCAAACACTCACCAACAAGGTGTAAATTTGTTGTGACAAAGATGTTTTCTTTTTGGTAGTTTCTATTCTGTAGTATAAAACTTTGATCACCTTGCGTATATGGATAAATGGGATGATGTACAAAAGTAGCCTACTCTGTATTAGCATAGTTGATTCCATATTTTTTGATTGAAGGGTATAAAAGGCCCCAGGATTTTAAGTTAATGGATATGGTGCACCTACTACTTTGTAGTGATATAAACATGCTATCTCAAGGAAGTAGCAAGTCTATGTATGATTGATTTGTGTATGAATATATGTGTGTGCTGGGGCAGATTTAAGACTTGGGGTTTAATGGTTAAATAATCTCAAATTATAAAGAAAAAGCGAGACAAAATGAATATGTGTGTGCGCGCTGAGGCAGATTTAAGACTTGGAGTTCAATTGTTAAATAATCTCAAATTATAAAGAAAAAGTGAGACAAAACGAAGGCTTGAGTTGTTTTTGTTTAAAAAGACAAGGAAAAAAAAACCAAGATAACTATGTTGCCCAAAGGATTCAAACCCTTGCAGAGGACAGCAAAGCTTAACAGGTTTCCCCTTTGCCACTATCAACAGACCATTTTTATGTTGGGTTCCAACTAAAAAATTATTAATATGTTTAGTGGATTCTCAATATAAATACAAGGTTTGTGCAAAAGTTACTCGTTTCCGGAAACCCACGCATATATCCTAACCCATTGTATGCCCGCAAGTGTGTCTGTGTGTGTATGTATATATGATATATGTATGTATGTACGTGTCTATTCCTGCTTCTGGCTTGACATATATCTCTGTTTCAAGAGAAAATAGTTTTTGTAATTGCTACTTACTGCTGATTTTCAATTAGAAGTGGCACTGCTGTGTGTGATTGAGTCTGTGTATGTACATCTCCTTTCCTGTTTAATTAGTGCCTGATAAGCCTAAATTATTAAAAGTTTTCTTTGTTGAGATTTTGGTTCTTTCCCAATGTGGATATTGCTGTTTTTAACTAGTTTTGATTTTCCCAGGATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGAT</genome_strand>
        <mrna_strand>AAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTACGTGACTATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E609856" ref_strand="-" ref_description="SGN-E609856 [46348]">
      <seq>gagagcttgttttcaaagaagacggacaggaatatgcgcaggtccttcgtatgcttggtaatggacgttgtgaagctatgtgtattgatggaactaagcgtcttagtcacatacgtggtaagatgcataagaaagtatggatcgctgctggtgatatcatccttgttggcctccgtgactatcaggatgacaaagctgatgtgatcttgaagtacatgcctgatgaggccaggttattgaaggcatatggagagttaccagagaatacaaggcttaatgagggcattgctaatggtctggatgaagaggatgagggtgctggtgatgattacattgagtttgaggatgaagacatcgacaaaatctaatctaaactcaaaaactgttgttactgaggtctatcatagaccttgctaatatttctgtggcgttctttttccatgaacagttgaaaaagtatttttgtgtatcgtttgaagttgtatgattgagtcttgtgcgtcgaagttctgtctgaaaatttgtgctttcatgaaatgaatgcaatattctggctcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="32940" stop="35236"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="33240" g_stop="33424" g_length="185"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="185" r_length="185" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="33425" i_stop="34567" i_length="1143">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.994" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="34568" g_stop="34938" g_length="371"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="558" r_length="373" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E609856" ref_strand="-">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E609856" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="33240" e_stop="33424"/>
          <exon e_start="34568" e_stop="34938"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTACGTGACTATCAGGCAAGATCCAATTTTTCCGACACCCTTTTTCTTCTATTTGTGTTTTTCGTATCTCTTTTCAGAATTTTGTTGTGTTTTTCTTTAAGAAATGAAATTTGGTATTACAAGCTTGAGGATCAAACACTCACCAACAAGGTGTAAATTTGTTGTGACAAAGATGTTTTCTTTTTGGTAGTTTCTATTCTGTAGTATAAAACTTTGATCACCTTGCGTATATGGATAAATGGGATGATGTACAAAAGTAGCCTACTCTGTATTAGCATAGTTGATTCCATATTTTTTGATTGAAGGGTATAAAAGGCCCCAGGATTTTAAGTTAATGGATATGGTGCACCTACTACTTTGTAGTGATATAAACATGCTATCTCAAGGAAGTAGCAAGTCTATGTATGATTGATTTGTGTATGAATATATGTGTGTGCTGGGGCAGATTTAAGACTTGGGGTTTAATGGTTAAATAATCTCAAATTATAAAGAAAAAGCGAGACAAAATGAATATGTGTGTGCGCGCTGAGGCAGATTTAAGACTTGGAGTTCAATTGTTAAATAATCTCAAATTATAAAGAAAAAGTGAGACAAAACGAAGGCTTGAGTTGTTTTTGTTTAAAAAGACAAGGAAAAAAAAACCAAGATAACTATGTTGCCCAAAGGATTCAAACCCTTGCAGAGGACAGCAAAGCTTAACAGGTTTCCCCTTTGCCACTATCAACAGACCATTTTTATGTTGGGTTCCAACTAAAAAATTATTAATATGTTTAGTGGATTCTCAATATAAATACAAGGTTTGTGCAAAAGTTACTCGTTTCCGGAAACCCACGCATATATCCTAACCCATTGTATGCCCGCAAGTGTGTCTGTGTGTGTATGTATATATGATATATGTATGTATGTACGTGTCTATTCCTGCTTCTGGCTTGACATATATCTCTGTTTCAAGAGAAAATAGTTTTTGTAATTGCTACTTACTGCTGATTTTCAATTAGAAGTGGCACTGCTGTGTGTGATTGAGTCTGTGTATGTACATCTCCTTTCCTGTTTAATTAGTGCCTGATAAGCCTAAATTATTAAAAGTTTTCTTTGTTGAGATTTTGGTTCTTTCCCAATGTGGATATTGCTGTTTTTAACTAGTTTTGATTTTCCCAGGATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAACACAAGACTTAATGAGGGCATTGCTAATGGTCTTGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAGTTTGAGGATGAAGACATTGATAAAATCTAATCTAAACTC-AAAATTGTTGTTACTGAGGTCTATCATATGCCTTGCTAATATTTCTGTGGCGTTCTTTTTCCTTAAACA-TTGAAAAAGTATTTTTGTGTATCGTTTGAAGTTGTATGATTGAGTTTTGTGCATCAAAGTTCTGTCTGAAAATTTGTGCTTTCATGAAATGAATGCAATATTCTGGCTTG</genome_strand>
        <mrna_strand>GAGAGCTTGTTTTCAAAGAAGACGGACAGGAATATGCGCAGGTCCTTCGTATGCTTGGTAATGGACGTTGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTAGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTCCGTGACTATCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAATACAAGGCTTAATGAGGGCATTGCTAATGGTCTGGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAGTTTGAGGATGAAGACATCGACAAAATCTAATCTAAACTCAAAAACTGTTGTTACTGAGGTCTATCATAGACCTTGCTAATATTTCTGTGGCGTTCTTTTTCCATGAACAGTTGAAAAAGTATTTTTGTGTATCGTTTGAAGTTGTATGATTGAGTCTTGTGCGTCGAAGTTCTGTCTGAAAATTTGTGCTTTCATGAAATGAATGCAATATTCTGGCTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E538197" ref_strand="+" ref_description="SGN-E538197 [TUS-57-D15](-)">
      <seq>tcagaatgactccagtggtgagttgggaagtaaagtaataggtggagtgaaggagtacttacctcaagtagtttcccaaattgctagcactatcaaggaaatctatggattagggggaagaacatttttggtacttaaccttgcaccaattggatgttacccagcatttttggtaaagctccctcatgaaagttctgatattgatgagtatggatgcttgatatcatacaacaatgcagttgtggactataacaatatgcttaaagatgcattggcacaaacaagaaaagatctttcagatgcaaatgttatttatgtggacactcatgctgtcctcttggaacttttccaacaccccacttcacatgggttaaaatatggaaacaaagcatgttgtggacaaggaggtggttcttacaactttaaccaagaagtatactgtggaaataccaaagagataaatggacaaacattgtcagctacagcatgtgaggatccatacaattatgtgagctgggatgggatacatgccactgaagcagcaaacaaaatcacagcaaatgtcattctcaatgaggcttctatttttgatcctccattttcactacataaattctgtgatattcagactgtaggttgatacatgatccacaagatgttataactagaagaaacgaataaatagtggtcatgtgtttaattaaaattgacattgataaataaaaaaaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="38157" stop="36011"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="37857" g_stop="37761" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="97" r_length="97" r_score="0.969"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="37760" i_stop="37015" i_length="746">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37014" g_stop="36744" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="98" r_stop="368" r_length="271" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="36743" i_stop="36666" i_length="78">
            <donor d_prob="0.990" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="36665" g_stop="36301" g_length="365"/>
          <reference_exon_boundary r_type="cDNA" r_start="369" r_stop="733" r_length="365" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E538197" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E538197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="37857" e_stop="37761"/>
          <exon e_start="37014" e_stop="36744"/>
          <exon e_start="36665" e_stop="36301"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGAATGACTTCACTGGTGAGTTGGGAAGTAAAGGAATAGGTGGAGTGAAGGAGTACTTACCTCAAGTAGTTTCCCAAATTGCTAGCACTATCAAGGTAATAATAACATTAGAATTAATATATGTTTTGCCTCAGTTTATATGACGTAGTTTAGTTCTCTACTGAGTTTTGAAGTTTTTGTCTTGAACATGTTATAATATTTGTGTGTCAATAACAACTTTTTATTAATGGTAAAATGAAAACAACGAAGAAGTAAAGTTAATTAGTTTCAATATAGAAATTGTTGAGTTCCCTACATCATTGGTTACTATTTGGTCTTGGACAATACTCACCTCATGAGAGTTTGATTCAAAGTTCACGGTGTCAAACCTTATAACCAACTCAAATCGTGGTTTACCCGGTGTTTGCCCTAGCTTTCATGCACCCCAATAAATTCTACTAGTAACAGATACCAGGTAACTCTATCCACCAAAGCTAGGATAGATGAGAAGAATCACCTAGTGTTTTTTTTTTTTTTGTCTCTGTTGAATATTGAATAGGAGACCTCAGAATTTTCAACTCACTTCATTGACCGCTATGCTAAGCATGTTGGAGTTGTTTGGTTTCCTACATCTATTATGGATTGGGAACTTGGTTACCTCATGATCTAGCTTTCAAGATTTAATTTGGATCAGGAGTCATTTTTATTTGTTATGAAACGTATTTTACATAAATAAACTAAACCACATGTTGATTTAGTAGGGTCTTAACCTTTTCTAGCATAATTAGTTGTTTTTATAACTAGATAGCTAGTGTGAAATGTCTAAATCACATGTTGATTTAATTGATATTTCTTTCACCAGGAAATCTATGGATTAGGGGGAAGAACATTTTTGGTACTTAACCTTGCACCAATTGGATGTTACCCAGCATTTTTGGTAAAGCTCCCTCATGAAAGTTCTGATATTGATGAGTATGGATGCTTGATATCATACAACAATGCAGTTGTGGACTATAACAATATGCTTAAAGATGCATTGGCACAAACAAGAAAAGATCTTTCAGATGCAAATGTTATTTATGTGGACACTCATGCTGTCCTCTTGGAACTTTTCCAACACCCCACTTCACATGGTACAGCACCTAAACATGTGATTAGATGTTTTCACTAAAATTGTTGACCAACTTCTAATGATCAATGTGTGTTTGTAGGGTTAAAATATGGAAACAAAGCATGTTGTGGACAAGGAGGTGGTTCTTACAACTTTAACCAAGAAGTATACTGTGGAAATACCAAAGAGATAAATGGACAAACATTGTCAGCTACAGCATGTGAGGATCCATACAATTATGTGAGCTGGGATGGGATACATGCCACTGAAGCAGCAAACAAAATCACAGCAAATGTCATTCTCAATGAGGCTTCTATTTTTGATCCTCCATTTTCACTACATAAATTCTGTGATATTCAGACTGTAGGTTGATACATGATCCACAAGATGTTATAACTAGAAGAAACGAATAAATAGTGGTCATGTGTTTAATTAAAATTGACATTGATAAATAATGGATGCATT</genome_strand>
        <mrna_strand>TCAGAATGACTCCAGTGGTGAGTTGGGAAGTAAAGTAATAGGTGGAGTGAAGGAGTACTTACCTCAAGTAGTTTCCCAAATTGCTAGCACTATCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCTATGGATTAGGGGGAAGAACATTTTTGGTACTTAACCTTGCACCAATTGGATGTTACCCAGCATTTTTGGTAAAGCTCCCTCATGAAAGTTCTGATATTGATGAGTATGGATGCTTGATATCATACAACAATGCAGTTGTGGACTATAACAATATGCTTAAAGATGCATTGGCACAAACAAGAAAAGATCTTTCAGATGCAAATGTTATTTATGTGGACACTCATGCTGTCCTCTTGGAACTTTTCCAACACCCCACTTCACATG..............................................................................GGTTAAAATATGGAAACAAAGCATGTTGTGGACAAGGAGGTGGTTCTTACAACTTTAACCAAGAAGTATACTGTGGAAATACCAAAGAGATAAATGGACAAACATTGTCAGCTACAGCATGTGAGGATCCATACAATTATGTGAGCTGGGATGGGATACATGCCACTGAAGCAGCAAACAAAATCACAGCAAATGTCATTCTCAATGAGGCTTCTATTTTTGATCCTCCATTTTCACTACATAAATTCTGTGATATTCAGACTGTAGGTTGATACATGATCCACAAGATGTTATAACTAGAAGAAACGAATAAATAGTGGTCATGTGTTTAATTAAAATTGACATTGATAAATAAAAAAAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710988" ref_strand="+" ref_description="SGN-E710988 [FA57CE01]">
      <seq>attttagttattattattataacaacaacttgtaataatttggtggaaagcaaatgtgcatttgaagcaatttttaattttggagattcaaatagtgatactggtggatttaatgctgcatttccatctcaagggcctccttatggaatgacttattttaaaagaccaactggaagggcaagtgatggaagagtcattgtggattttcttgctcaaggattaggtttgccatatttgagtccatatttgcaatcaattggatctgatttcagacatggtgccaactttgcaacatcagcatccacagtgctcatgccacaaacatcattatttgtgtcaggtgttagccctttttatctaggaattcaactccaacagttcaagctatttaagactaaaattgatgaatttcagagtaaaggtaacactaatctgcctccctcagacatatttgggaaatctctttacacattctatataggtcagaatgacttcaccggtgagttgggaagtaaaggaataggtggagtgaaggagtacttacctcaagtagtttcccaaattgctagcactatcaaggaaatctatggattagggggaagaacatttttggtacttaaccttgcaccaattggatgttacccagcatttttggtaaagctccctcatgaaagttctgatattgatgagtatggatgcttgatatcatacaacaatgcagttgtggactataacaatatgcttaaagatgcattggcacaaaccaaaaaagatctttcagatgcaaatgttatttatgtgga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="40822" stop="36491"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="40522" g_stop="40312" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="211" r_length="211" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="40311" i_stop="38219" i_length="2093">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.972" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="38218" g_stop="38009" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="212" r_stop="421" r_length="210" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="38008" i_stop="37919" i_length="90">
            <donor d_prob="0.962" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37918" g_stop="37761" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="422" r_stop="579" r_length="158" r_score="0.994"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="37760" i_stop="37015" i_length="746">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="37014" g_stop="36791" g_length="224"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="803" r_length="224" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E710988" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>803</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710988" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="40522" e_stop="40312"/>
          <exon e_start="38218" e_stop="38009"/>
          <exon e_start="37918" e_stop="37761"/>
          <exon e_start="37014" e_stop="36791"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTAGTTATTATTATTATAACAACAACTTGTAATAATTTGGTGGAAAGCAAATGTGCATTTGAAGCAATTTTTAATTTTGGAGATTCAAATAGTGATACTGGTGGATTTAATGCTGCATTTCCATCTCAAGGGCCTCCTTATGGAATGACTTATTTTAAAAGACCAACTGGAAGGGCAAGTGATGGAAGAGTCATTGTGGATTTTCTTGGTATGGTTTTATCTAATTTTTTATTCATATTTGAATCGAGGGTCTTTCGAAACAAATTCCTTATGTGCATGAGATAGGAGTAAACTCTGCGAACATTATACTTTTCCAGACTCAATTTGTGAAATTTTATAGAGTATGTTGTTGTATTCATTTTGTTCGATTGGATCTTACTATAAGTATTGATTTGATTGTTTATGCTATTTTTTTATTAGATCGTTTAAAATGGAAGGAAAACACTTTTATAGTTGAAAAGTATTTTGGTTTAGACTTTCTATTTTTTCTCTTTGAGAAGTGATTTTTAAAGTATCACAAATTTCAAAAGTTTTATAATTAATGAAATACGATTTTGATATATTTACGATAATAATTATGTTACAAAAACGTTATTTCTTTTGTAAATAGTGTTAAGTACTCAAACCATATTTCATAAAAAAAAAATGTATTTGGTATAAGAAAAGATGTATTTTTTTAAGAGATTTTTTTTTGTGTTTGGTTGATCAAAATATTTTTTTATATCATCTTTATCGATTAGTAGTAACTTATCTTATTTTCGACACTACGAAGTCCACATTTTTTTAAAAAAAGTATACTTACAGATATCCTTTGAGCAATTTGTAGTGTACATTTTTTTAAAAATGATGGGGTATTTAACATAAATTCTTTGTTAAGATTAATTAAAGGGCACAGATGTGCCATTTTGGAAGGATTGCACCCCAAGACTTAAGATGTGATGCAAACAATCTACTTTTTTTAATGTATCAATTTATATAATTTACTTTTTTTTTCATTGAGTTTGAAAATAGATTGATATATTTTTATATTTAGTAATTTTTTAAATTTAAAATGTCTTTTTTATTTTTAATTAAATAATTTCTAATTCTACAAAAAATCTATCATTTATTTTATACCATAAGTTTCCGAAGTTTTTTTTGTTCTTTCTCAAACTCGATATCATGAAGTCAAACTTCAGCATACAAAGTGAGACAAAGGAAGTATAATATAAGGGTTAGTGGTTGCTTGCTCGTTTTCATGACCTATAAATCAGACACAAACAATTCTACAATTGCTATAAGGTTTCCCTTTTTTTAGATGAAATAAAAAGCAGTTCGATGCACAAATCATCATACGTTTATGTTGGGCTAGGAGAAGGTCACAAATGAAGAAAACCATGATATAAATATTAATAATTACTTTCACGATTCAAACTCGTGACACCAATGTCATCTTTTTGTCATTAATCTCTAAATGACAAGAAAACATGTTGGTTCGAAGACAGGAGTTTTATAATTACAAGACTGGGGGAAAAGAAAAACTTAGCTGTAAAAAGCAATGTAGTTGGTCCATGTAAAGGTGTAATTATTTTTTGTTTTGTCCATAGGTTTACCTTTCTTTGTCCTACTAGTAGAAATTACAAATGAGATAAAGTCTGTGACTCTCTTTTGTCTTTTTTCTCGTAACGTTATATATAGGGAAGCAGAAATTTAGACATAAACGTGTTATTTAATTTGATATCAACTGATATTTATTTCTTTTAATTTTAGGTGTGCATAAGTAAACACTTAACCTTTTATAAAATTGAACAATAGCCTCATTCATTCTATGTGAGGTCATACATGACAATTTTATGCCCTATATAGCAGAATTAACATGTATTATGTCACGTAGGACGTATATATCTATTTATTCAATTTTATACAAGTTTCGATATGCCTAATTGTACACACTAAAAATTGAAGGGCATAAATGTCCGTTGAATCCAAGTTAAGGAACATATTTATGTTATTATGTCTTTAGGAAACCATATAAAACTATCTTTATGTAATCTATATGTCATAAGTTCGAGCTGTGAAATCAATTATTGATGTTGTATTAAGTAGGCCGCCTACAGACAATCCTTAATGAAATTTCCGACTTAGTCAATTTACACTCTTGTTACCCTGCTTGAACATGACTTGTGTGCGGTCTTTCCCCAGACTCGCTTGAACATTTCTTATGTACCCTACTTGAATTTGAGTTATATGCGGCCTTTCCTTGAACCCTGCGTAGGTTACTAATATTGCTATAAATTAATATTAGTGTTGTTTGATGTGCAGCTCAAGGATTAGGTTTGCCATATTTGAGTCCATATTTGCAATCAATTGGATCTGATTTCAGACATGGTGCCAACTTTGCAACATCAGCATCCACAGTGCTCATGCCACAAACATCATTATTTGTGTCAGGTGTTAGCCCTTTTTATCTAGGAATTCAACTCCAACAGTTCAAGCTATTTAAGACTAAAATTGATGAATTTCAGAGTAAAGGTATAATAAATAATGTACTATACTTTATTAGTATTCCATTTTTTTGTTTGTTTTTCATAATCTTTTTATATTATTTTTCTTAATTTTCAGGTAACACTAATCTGCCTCCCTCAGACATATTTGGGAAATCTCTTTACACATTCTATATAGGTCAGAATGACTTCACTGGTGAGTTGGGAAGTAAAGGAATAGGTGGAGTGAAGGAGTACTTACCTCAAGTAGTTTCCCAAATTGCTAGCACTATCAAGGTAATAATAACATTAGAATTAATATATGTTTTGCCTCAGTTTATATGACGTAGTTTAGTTCTCTACTGAGTTTTGAAGTTTTTGTCTTGAACATGTTATAATATTTGTGTGTCAATAACAACTTTTTATTAATGGTAAAATGAAAACAACGAAGAAGTAAAGTTAATTAGTTTCAATATAGAAATTGTTGAGTTCCCTACATCATTGGTTACTATTTGGTCTTGGACAATACTCACCTCATGAGAGTTTGATTCAAAGTTCACGGTGTCAAACCTTATAACCAACTCAAATCGTGGTTTACCCGGTGTTTGCCCTAGCTTTCATGCACCCCAATAAATTCTACTAGTAACAGATACCAGGTAACTCTATCCACCAAAGCTAGGATAGATGAGAAGAATCACCTAGTGTTTTTTTTTTTTTTGTCTCTGTTGAATATTGAATAGGAGACCTCAGAATTTTCAACTCACTTCATTGACCGCTATGCTAAGCATGTTGGAGTTGTTTGGTTTCCTACATCTATTATGGATTGGGAACTTGGTTACCTCATGATCTAGCTTTCAAGATTTAATTTGGATCAGGAGTCATTTTTATTTGTTATGAAACGTATTTTACATAAATAAACTAAACCACATGTTGATTTAGTAGGGTCTTAACCTTTTCTAGCATAATTAGTTGTTTTTATAACTAGATAGCTAGTGTGAAATGTCTAAATCACATGTTGATTTAATTGATATTTCTTTCACCAGGAAATCTATGGATTAGGGGGAAGAACATTTTTGGTACTTAACCTTGCACCAATTGGATGTTACCCAGCATTTTTGGTAAAGCTCCCTCATGAAAGTTCTGATATTGATGAGTATGGATGCTTGATATCATACAACAATGCAGTTGTGGACTATAACAATATGCTTAAAGATGCATTGGCACAAACAAGAAAAGATCTTTCAGATGCAAATGTTATTTATGTGGA</genome_strand>
        <mrna_strand>ATTTTAGTTATTATTATTATAACAACAACTTGTAATAATTTGGTGGAAAGCAAATGTGCATTTGAAGCAATTTTTAATTTTGGAGATTCAAATAGTGATACTGGTGGATTTAATGCTGCATTTCCATCTCAAGGGCCTCCTTATGGAATGACTTATTTTAAAAGACCAACTGGAAGGGCAAGTGATGGAAGAGTCATTGTGGATTTTCTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAAGGATTAGGTTTGCCATATTTGAGTCCATATTTGCAATCAATTGGATCTGATTTCAGACATGGTGCCAACTTTGCAACATCAGCATCCACAGTGCTCATGCCACAAACATCATTATTTGTGTCAGGTGTTAGCCCTTTTTATCTAGGAATTCAACTCCAACAGTTCAAGCTATTTAAGACTAAAATTGATGAATTTCAGAGTAAAG..........................................................................................GTAACACTAATCTGCCTCCCTCAGACATATTTGGGAAATCTCTTTACACATTCTATATAGGTCAGAATGACTTCACCGGTGAGTTGGGAAGTAAAGGAATAGGTGGAGTGAAGGAGTACTTACCTCAAGTAGTTTCCCAAATTGCTAGCACTATCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCTATGGATTAGGGGGAAGAACATTTTTGGTACTTAACCTTGCACCAATTGGATGTTACCCAGCATTTTTGGTAAAGCTCCCTCATGAAAGTTCTGATATTGATGAGTATGGATGCTTGATATCATACAACAATGCAGTTGTGGACTATAACAATATGCTTAAAGATGCATTGGCACAAACCAAAAAAGATCTTTCAGATGCAAATGTTATTTATGTGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E399828" ref_strand="+" ref_description="SGN-E399828 [cSTC-2-L13]">
      <seq>ttggatctgatttcagacatggtgcaaactttgcaacatcagcatccacagtgctcatgccacaaacatcattgtttgtatcaggtgttagccctttttacctaggaattcaactccaacagttcaagctatttaaggctaaaatgtgaatttcagagtaaaggtaacactaatctgcctccctcagacatatttgggaaatctctttatacattctatataggtcagaatgacttcactggtgatttgggaagtaaaggaataggtggagtgaaggagtacttacctcaagtagtttcccaaattgttagcacaatcaaggaaatctatggattagggggaagaacatttttggtacttaaccttgcaccaattggatgttacccagcatttttggtgaagctccctcatgaaagttctgatattgatgagtgtggatgcttgatatcatacaacaatgcagttgtggactacaacaatatgcttaaagatgcatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="38473" stop="36539"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="38173" g_stop="38009" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="163" r_length="163" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="38008" i_stop="37919" i_length="90">
            <donor d_prob="0.962" d_score="0.94"/>
            <acceptor a_prob="1.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="37918" g_stop="37761" g_length="158"/>
          <reference_exon_boundary r_type="cDNA" r_start="164" r_stop="321" r_length="158" r_score="0.975"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="37760" i_stop="37015" i_length="746">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.985" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="37014" g_stop="36839" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="497" r_length="176" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E399828" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E399828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="38173" e_stop="38009"/>
          <exon e_start="37918" e_stop="37761"/>
          <exon e_start="37014" e_stop="36839"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGATCTGATTTCAGACATGGTGCCAACTTTGCAACATCAGCATCCACAGTGCTCATGCCACAAACATCATTATTTGTGTCAGGTGTTAGCCCTTTTTATCTAGGAATTCAACTCCAACAGTTCAAGCTATTTAAGACTAAAATTGATGAATTTCAGAGTAAAGGTATAATAAATAATGTACTATACTTTATTAGTATTCCATTTTTTTGTTTGTTTTTCATAATCTTTTTATATTATTTTTCTTAATTTTCAGGTAACACTAATCTGCCTCCCTCAGACATATTTGGGAAATCTCTTTACACATTCTATATAGGTCAGAATGACTTCACTGGTGAGTTGGGAAGTAAAGGAATAGGTGGAGTGAAGGAGTACTTACCTCAAGTAGTTTCCCAAATTGCTAGCACTATCAAGGTAATAATAACATTAGAATTAATATATGTTTTGCCTCAGTTTATATGACGTAGTTTAGTTCTCTACTGAGTTTTGAAGTTTTTGTCTTGAACATGTTATAATATTTGTGTGTCAATAACAACTTTTTATTAATGGTAAAATGAAAACAACGAAGAAGTAAAGTTAATTAGTTTCAATATAGAAATTGTTGAGTTCCCTACATCATTGGTTACTATTTGGTCTTGGACAATACTCACCTCATGAGAGTTTGATTCAAAGTTCACGGTGTCAAACCTTATAACCAACTCAAATCGTGGTTTACCCGGTGTTTGCCCTAGCTTTCATGCACCCCAATAAATTCTACTAGTAACAGATACCAGGTAACTCTATCCACCAAAGCTAGGATAGATGAGAAGAATCACCTAGTGTTTTTTTTTTTTTTGTCTCTGTTGAATATTGAATAGGAGACCTCAGAATTTTCAACTCACTTCATTGACCGCTATGCTAAGCATGTTGGAGTTGTTTGGTTTCCTACATCTATTATGGATTGGGAACTTGGTTACCTCATGATCTAGCTTTCAAGATTTAATTTGGATCAGGAGTCATTTTTATTTGTTATGAAACGTATTTTACATAAATAAACTAAACCACATGTTGATTTAGTAGGGTCTTAACCTTTTCTAGCATAATTAGTTGTTTTTATAACTAGATAGCTAGTGTGAAATGTCTAAATCACATGTTGATTTAATTGATATTTCTTTCACCAGGAAATCTATGGATTAGGGGGAAGAACATTTTTGGTACTTAACCTTGCACCAATTGGATGTTACCCAGCATTTTTGGTAAAGCTCCCTCATGAAAGTTCTGATATTGATGAGTATGGATGCTTGATATCATACAACAATGCAGTTGTGGACTATAACAATATGCTTAAAGATGCATT</genome_strand>
        <mrna_strand>TTGGATCTGATTTCAGACATGGTGCAAACTTTGCAACATCAGCATCCACAGTGCTCATGCCACAAACATCATTGTTTGTATCAGGTGTTAGCCCTTTTTACCTAGGAATTCAACTCCAACAGTTCAAGCTATTTAAGGCTAAAA-TG-TGAATTTCAGAGTAAAG..........................................................................................GTAACACTAATCTGCCTCCCTCAGACATATTTGGGAAATCTCTTTATACATTCTATATAGGTCAGAATGACTTCACTGGTGATTTGGGAAGTAAAGGAATAGGTGGAGTGAAGGAGTACTTACCTCAAGTAGTTTCCCAAATTGTTAGCACAATCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCTATGGATTAGGGGGAAGAACATTTTTGGTACTTAACCTTGCACCAATTGGATGTTACCCAGCATTTTTGGTGAAGCTCCCTCATGAAAGTTCTGATATTGATGAGTGTGGATGCTTGATATCATACAACAATGCAGTTGTGGACTACAACAATATGCTTAAAGATGCATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E431321" ref_strand="+" ref_description="SGN-E431321 [STM-55-C16]">
      <seq>ttcttttatataatatgtactccatattttattattctatctagaaaaagagaaagtagatacaaaatgcagaaagtttgagacaaaaactgcaaaattccatcaattaaatctcaatttaagttggcataataatcttggttagcgtacctccaacaacaactacgcccaagtcccaaacaagttgtgatattgttagtacctccgaaaggaaataatcatctcagcagtgaattagtagagtgtctagttgctttctgacacatgggaagtattgaggatgggaagtcttctacgcctgagaaatcattttcgactgcacctgatcaaagcaattttcatgtgtatcctgattgggctgcgatgcaggcatattatggtcatcgagtagctgtacctccatatgttaattctgctgttgcacctggtcatgctcctcatccttacatgtggggcccgctaccgcctatgatgccaccttttggcacaccatatgcaggagtctatgcacatggtggtgtttatccgcaccctggagttcctattgtgtcccgtcctcaggcacatggaatgacatcatctcctgctgttagccaaaccatgaatactgcttctttgagtatggatgcttctgctaagtcttcggggaactctgatcaaggcttgacgagtcagtcaaaagggtttaatgggcttggaatgtcaattggaaatttcagtgttgacaatggtgatggcactgaccatggaccttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="52581" stop="56401"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52881" g_stop="53001" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.876"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53002" i_stop="53942" i_length="941">
            <donor d_prob="0.939" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53943" g_stop="54143" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="324" r_length="201" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54144" i_stop="54303" i_length="160">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54304" g_stop="54348" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="369" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54349" i_stop="54436" i_length="88">
            <donor d_prob="0.938" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54437" g_stop="54532" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="465" r_length="96" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54533" i_stop="54649" i_length="117">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.681" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54650" g_stop="54730" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="546" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54731" i_stop="55732" i_length="1002">
            <donor d_prob="0.954" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55733" g_stop="55789" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="547" r_stop="603" r_length="57" r_score="0.912"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="55790" i_stop="55947" i_length="158">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.337" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="55948" g_stop="56101" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="604" r_stop="757" r_length="154" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E431321" ref_strand="+">
        <total_alignment_score>0.930</total_alignment_score>
        <cumulative_length_of_scored_exons>755</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E431321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52881" e_stop="53001"/>
          <exon e_start="53943" e_stop="54143"/>
          <exon e_start="54304" e_stop="54348"/>
          <exon e_start="54437" e_stop="54532"/>
          <exon e_start="54650" e_stop="54730"/>
          <exon e_start="55733" e_stop="55789"/>
          <exon e_start="55948" e_stop="56101"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTATATATATTATATATTTGAAA-TTTATTTTTCTCTCTAGACAAAGAGAAAGTA-ATACAAAATGCAGAAAGTTTGAGGCAAAAACTGCAAAATTCCATCAATTAAATCTCAATTTAAGGTATGTTCAAATTTAGATTTATGATTTTTGGGAAAAGTTTTGGATTATGAAGCTGAATTTAAGTTTGATCTCTCTTAAAAAAAAAAATATTTGAGACCTAAAATACTTTGAGCTATTAGAAATGGTATAAAATTACTCTTTATCAACGTATTAGTTCTGAAATACCCTTAACGATAGGTATTTTTATACCATTTTCAATAGTTACGAGGATATGTTATGTTCTTATAATAATGCATAGAAATTAAGAAAATTTTTTATGTTTTATTCTTCCTTTGTTTGAATATTGATATTTTCTAGTGGTAATTTAAGTAGGTTGAGGAGGACTAGATGGTAATTTCATCCTATGTAATTCTATACTCAATTTTTTTTGGTAAAGTTCGTCTCTTATGTTAGGACTATGAGTGGACGATTATGCCCCTGTAAGAAAATGAGTCTATTTTAAAAGGACAGTGCATCAAGAGAGAATGGCTAAGGGTGATGATAAAGAATTAATTTCTTGAAGGTTTGAAAAATATAAGAGTAAAAACTTATACTGACAGGGATGGATCAATCACTTATATTCTGTGTTAAAATTTAGGTGTCATAAATTTGTAGCATAAATACCAAGTAGTGTGTTAGTTATACATAGATTGAAAAAGTGTATTCGATAAGGTATTTGGAATTTACTAAGTTAATGCATCTATTATATTTTCTAATAGACTATACCGAACGATCCCTTAGAAGTTTCGGCTATAGAAACTATTTCATGAAGTGTATCTTTGAAGATGTTACATAGTATATATTTGCCTTTAAGAGTAATTGAGATTCTTTAGCTAAATATTAGCTATTTAATGTGCTATGCATTGTACTGGAATATATTAGGATGGATGAAACTTATTTGCTTCTCTGCTTTGGATGGTTTTGTTGTTGCGCATTGTTTGACAGGGCTTTGTTTTATGCAGTTGGCATAATAATCTTGGTTAGCATACCTCCAACAACTACTACGCGCAAGTCCCAAACAAGTTGTTATATTGTTAGTACCTCCTAAAGGAAATAATCATCTCATCAGTGAATTTGTAGAGTGTCTAGTTGTTTTCTGACACATGGGAAATATTGAGGACAGGAAGTCTTCTACGCCTGAGAAATCATTTTCGACTGCACCAGTAAGCAAATACAGAATTGTGTATTGTTTATTATGTGTAGAGTGTTTGATATTGTTCTCTCTGTCGCTCGTGTCTTTAAATGTCCTCGATGTTGCTTTCCTCTTTTAGTATTATCTTTTCTTTGAAATTCATCCCGGTAAATGTCTTCATGTATTGACAGGATCAAAGCAGTTTTCATGTGTATCCTGATTGGGCTGTGATGCAGGTTTAATCATTTTCTGCCATGCTGTTAGATATTATTACCATAGATCTAGTGGTTATTGACATTTTTATGTAAATTGCTAAATCTTCAGGCATATTATGCCCATCGAGTAGCTGTACCTCCATATGTTAGTTCTGCTGTTGCACCTGGTCATGCTCCTCATCCTTATATGTGGGGCCCGCTACCGGTACTTTCTGGTCTGAACTTTTCTTTTATATTCTTGCAAGTTGTTTAATTAAAGTGCTAGGAAATAGTTTATATGGATTCGCCGACACGAGGTCTAACTAGAATTCTCCTTTTTTAGCCTATGTTTCCACCTTATGGCACACCATATGCAGGAGTCTATGCACATGGTGGTGTTTATCCGCACTCTGGAGTTCCTATTGTGAGTCCCCATTCTAGCATCTCCATTCTTTTTCTTTTCTGAAATCAAGAGTGCTTTCTGATAACTGTGCTTTCTAAAGTTCTCTACATGTAATATCATAATAAGCCACTGGAAACAGCAGAACCAATGCTGTGAGCAGCGTTCGCCTCGGTTATTACCTAACGAGAAAAGCCGATGCGAAAGTAGTCCTTTACGCTAGGAAACGCCAGAGAGACTGACCTCTTCTAACTAGTTTTGTTCACAGTTTGCTAGGCCATCACATTTAGTTTAGATTATAGGGCATTGATCAACAGCTTTAACGAGCTAGGTCCACTAATTTCTTAAAGGAACTGAGAAAAGTAACTACGGAGGAAGAAGGGAAGGTTATGACTATGTTAAAAATAAATGGTGTGTGAAAAACAAACAGTTAACGGATTTAGGAATCATGCCCTTCTATTGGTCATACAATGATTTCCAGTAGCTACCTTATCAGGATTTATGAGTGTACTCCTCAGCTGTTGGTAAAAAAAATGTTGTATTTGTTGTGTTTCTTAGTATGATGGAGAAGGTTATTTTTATTATAAATTCAGTTGAATATTTACGGATTGGCTCAAGCTAACGGTGATCAATCATAGAGGGTAGTCATATCAAAACTTGATCCACCTTTACAAGTTCAACAAAGTGGGGTCTGTGGAGGGTAGAGTGTACACAGGTCTTACCCCTATTCGTGGAGGTAGAGAAGTTATTTCCGAAAGATCCTCGGCTCAAGTGAAGGAAAACAAAGTAGTAATGAAAAGGAAAAACGATAGTGAAGAAAAAATACAACTAAAGGAAAGCAGTAAAGAGCATAAAGTACCAAACAACAAAATAGTACGTTCACCTAAACATAATAAACAATGGATAGCAAAGCATATGACTGTATATTTATGTAGAGTTACTGTAATGTATGACTCTAGTGACAAAAGTTGTGGCTGAAACATACGAATATGCCCATTTATAGATTATTCTTTTTTCTGATTTCAGGTGTTCCGTCCTCAGGCGCATGGAATGACATCATCTCCCGTTGTTAGCCAAACCAAGGTATATGTTACTTTTAGTTCTTTGACTTCTTTCAGTGTTTATGAACTTATTTGCTTCTGGAAAATGCCCGAACTGACAGATTATGTTCCCTTTAAGCTCAATGTAGTATTCTAGTACCTAATAGTGGGATTGAAGCTAAATCAGTCTACATTGTGTAGAATACTGCTTCTTTGGGTATGGATACTTCTGCTAAGTCTTCGGGGAACTCTGATCAAGGCTTGACGAGTCAGTCAAAAGGGTTTGATGGGCTTGGAATCTCAATAGGGAATCACAGTGTTGACAATGGTGCTGGCACTGACCATGGACCTTCGC</genome_strand>
        <mrna_strand>TTCTTTTATATAATATGTACTCCATATTTTATTATTCTATCTAGAAAAAGAGAAAGTAGATACAAAATGCAGAAAGTTTGAGACAAAAACTGCAAAATTCCATCAATTAAATCTCAATTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCATAATAATCTTGGTTAGCGTACCTCCAACAACAACTACGCCCAAGTCCCAAACAAGTTGTGATATTGTTAGTACCTCCGAAAGGAAATAATCATCTCAGCAGTGAATTAGTAGAGTGTCTAGTTGCTTTCTGACACATGGGAAGTATTGAGGATGGGAAGTCTTCTACGCCTGAGAAATCATTTTCGACTGCACCT................................................................................................................................................................GATCAAAGCAATTTTCATGTGTATCCTGATTGGGCTGCGATGCAG........................................................................................GCATATTATGGTCATCGAGTAGCTGTACCTCCATATGTTAATTCTGCTGTTGCACCTGGTCATGCTCCTCATCCTTACATGTGGGGCCCGCTACCG.....................................................................................................................CCTATGATGCCACCTTTTGGCACACCATATGCAGGAGTCTATGCACATGGTGGTGTTTATCCGCACCCTGGAGTTCCTATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCCGTCCTCAGGCACATGGAATGACATCATCTCCTGCTGTTAGCCAAACCATG..............................................................................................................................................................AATACTGCTTCTTTGAGTATGGATGCTTCTGCTAAGTCTTCGGGGAACTCTGATCAAGGCTTGACGAGTCAGTCAAAAGGGTTTAATGGGCTTGGAATGTCAATTGGAAATTTCAGTGTTGACAATGGTGATGGCACTGACCATGGACCTTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E463883" ref_strand="+" ref_description="SGN-E463883 [cPRO-16-C14]">
      <seq>ttcttttatataatatgtactccatattttattattctatctagaaaaagagaaagtagatacaaaatgcagaaagtttgagacaaaaactgcaaaattccatcaattaaatctcaatttaagttggcataataatcttggttagcgtacctccaacaacaactacgcccaagtcccaaacaagttgtgatattgttagtacctccgaaaggaaataatcatctcagcagtgaattagtagagtgtctagttgctttctgacacatgggaagtattgaggatgggaagtcttctacgcctgagaaatcattttcgactgcacctgatcaaagcaattttcatgtgtatcctgattgggctgcgatgcaggcatattatggtcatcgagtagctgtacctccatatgttaattctgctgttgcacctggtcatgctcctcatccttacatgtggggcccgctaccgcctatgatgccaccttttggcacaccatatgcaggagtctatgcacatggtggtgtttatccgcaccctggaagtcctatttgtgtcccgtcctcaggcacatggaatgacatcatctcctgctgttagccaaaccatgaatactgcttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="52581" stop="56089"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52881" g_stop="53001" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="123" r_length="123" r_score="0.876"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53002" i_stop="53942" i_length="941">
            <donor d_prob="0.939" d_score="0.98"/>
            <acceptor a_prob="0.989" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53943" g_stop="54143" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="324" r_length="201" r_score="0.940"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54144" i_stop="54303" i_length="160">
            <donor d_prob="0.994" d_score="0.94"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54304" g_stop="54348" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="369" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54349" i_stop="54436" i_length="88">
            <donor d_prob="0.938" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54437" g_stop="54532" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="370" r_stop="465" r_length="96" r_score="0.958"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54533" i_stop="54649" i_length="117">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.681" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54650" g_stop="54730" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="466" r_stop="547" r_length="82" r_score="0.901"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54731" i_stop="55732" i_length="1002">
            <donor d_prob="0.954" d_score="0.90"/>
            <acceptor a_prob="0.999" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55733" g_stop="55789" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="548" r_stop="604" r_length="57" r_score="0.912"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="55790" i_stop="55947" i_length="158">
            <donor d_prob="1.000" d_score="0.92"/>
            <acceptor a_prob="0.337" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="55948" g_stop="55960" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="605" r_stop="617" r_length="13" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E463883" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>614</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E463883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52881" e_stop="53001"/>
          <exon e_start="53943" e_stop="54143"/>
          <exon e_start="54304" e_stop="54348"/>
          <exon e_start="54437" e_stop="54532"/>
          <exon e_start="54650" e_stop="54730"/>
          <exon e_start="55733" e_stop="55789"/>
          <exon e_start="55948" e_stop="55960"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTATATATATTATATATTTGAAA-TTTATTTTTCTCTCTAGACAAAGAGAAAGTA-ATACAAAATGCAGAAAGTTTGAGGCAAAAACTGCAAAATTCCATCAATTAAATCTCAATTTAAGGTATGTTCAAATTTAGATTTATGATTTTTGGGAAAAGTTTTGGATTATGAAGCTGAATTTAAGTTTGATCTCTCTTAAAAAAAAAAATATTTGAGACCTAAAATACTTTGAGCTATTAGAAATGGTATAAAATTACTCTTTATCAACGTATTAGTTCTGAAATACCCTTAACGATAGGTATTTTTATACCATTTTCAATAGTTACGAGGATATGTTATGTTCTTATAATAATGCATAGAAATTAAGAAAATTTTTTATGTTTTATTCTTCCTTTGTTTGAATATTGATATTTTCTAGTGGTAATTTAAGTAGGTTGAGGAGGACTAGATGGTAATTTCATCCTATGTAATTCTATACTCAATTTTTTTTGGTAAAGTTCGTCTCTTATGTTAGGACTATGAGTGGACGATTATGCCCCTGTAAGAAAATGAGTCTATTTTAAAAGGACAGTGCATCAAGAGAGAATGGCTAAGGGTGATGATAAAGAATTAATTTCTTGAAGGTTTGAAAAATATAAGAGTAAAAACTTATACTGACAGGGATGGATCAATCACTTATATTCTGTGTTAAAATTTAGGTGTCATAAATTTGTAGCATAAATACCAAGTAGTGTGTTAGTTATACATAGATTGAAAAAGTGTATTCGATAAGGTATTTGGAATTTACTAAGTTAATGCATCTATTATATTTTCTAATAGACTATACCGAACGATCCCTTAGAAGTTTCGGCTATAGAAACTATTTCATGAAGTGTATCTTTGAAGATGTTACATAGTATATATTTGCCTTTAAGAGTAATTGAGATTCTTTAGCTAAATATTAGCTATTTAATGTGCTATGCATTGTACTGGAATATATTAGGATGGATGAAACTTATTTGCTTCTCTGCTTTGGATGGTTTTGTTGTTGCGCATTGTTTGACAGGGCTTTGTTTTATGCAGTTGGCATAATAATCTTGGTTAGCATACCTCCAACAACTACTACGCGCAAGTCCCAAACAAGTTGTTATATTGTTAGTACCTCCTAAAGGAAATAATCATCTCATCAGTGAATTTGTAGAGTGTCTAGTTGTTTTCTGACACATGGGAAATATTGAGGACAGGAAGTCTTCTACGCCTGAGAAATCATTTTCGACTGCACCAGTAAGCAAATACAGAATTGTGTATTGTTTATTATGTGTAGAGTGTTTGATATTGTTCTCTCTGTCGCTCGTGTCTTTAAATGTCCTCGATGTTGCTTTCCTCTTTTAGTATTATCTTTTCTTTGAAATTCATCCCGGTAAATGTCTTCATGTATTGACAGGATCAAAGCAGTTTTCATGTGTATCCTGATTGGGCTGTGATGCAGGTTTAATCATTTTCTGCCATGCTGTTAGATATTATTACCATAGATCTAGTGGTTATTGACATTTTTATGTAAATTGCTAAATCTTCAGGCATATTATGCCCATCGAGTAGCTGTACCTCCATATGTTAGTTCTGCTGTTGCACCTGGTCATGCTCCTCATCCTTATATGTGGGGCCCGCTACCGGTACTTTCTGGTCTGAACTTTTCTTTTATATTCTTGCAAGTTGTTTAATTAAAGTGCTAGGAAATAGTTTATATGGATTCGCCGACACGAGGTCTAACTAGAATTCTCCTTTTTTAGCCTATGTTTCCACCTTATGGCACACCATATGCAGGAGTCTATGCACATGGTGGTGTTTATCCGCACTCTGGAGTTCCTA-TTGTGAGTCCCCATTCTAGCATCTCCATTCTTTTTCTTTTCTGAAATCAAGAGTGCTTTCTGATAACTGTGCTTTCTAAAGTTCTCTACATGTAATATCATAATAAGCCACTGGAAACAGCAGAACCAATGCTGTGAGCAGCGTTCGCCTCGGTTATTACCTAACGAGAAAAGCCGATGCGAAAGTAGTCCTTTACGCTAGGAAACGCCAGAGAGACTGACCTCTTCTAACTAGTTTTGTTCACAGTTTGCTAGGCCATCACATTTAGTTTAGATTATAGGGCATTGATCAACAGCTTTAACGAGCTAGGTCCACTAATTTCTTAAAGGAACTGAGAAAAGTAACTACGGAGGAAGAAGGGAAGGTTATGACTATGTTAAAAATAAATGGTGTGTGAAAAACAAACAGTTAACGGATTTAGGAATCATGCCCTTCTATTGGTCATACAATGATTTCCAGTAGCTACCTTATCAGGATTTATGAGTGTACTCCTCAGCTGTTGGTAAAAAAAATGTTGTATTTGTTGTGTTTCTTAGTATGATGGAGAAGGTTATTTTTATTATAAATTCAGTTGAATATTTACGGATTGGCTCAAGCTAACGGTGATCAATCATAGAGGGTAGTCATATCAAAACTTGATCCACCTTTACAAGTTCAACAAAGTGGGGTCTGTGGAGGGTAGAGTGTACACAGGTCTTACCCCTATTCGTGGAGGTAGAGAAGTTATTTCCGAAAGATCCTCGGCTCAAGTGAAGGAAAACAAAGTAGTAATGAAAAGGAAAAACGATAGTGAAGAAAAAATACAACTAAAGGAAAGCAGTAAAGAGCATAAAGTACCAAACAACAAAATAGTACGTTCACCTAAACATAATAAACAATGGATAGCAAAGCATATGACTGTATATTTATGTAGAGTTACTGTAATGTATGACTCTAGTGACAAAAGTTGTGGCTGAAACATACGAATATGCCCATTTATAGATTATTCTTTTTTCTGATTTCAGGTGTTCCGTCCTCAGGCGCATGGAATGACATCATCTCCCGTTGTTAGCCAAACCAAGGTATATGTTACTTTTAGTTCTTTGACTTCTTTCAGTGTTTATGAACTTATTTGCTTCTGGAAAATGCCCGAACTGACAGATTATGTTCCCTTTAAGCTCAATGTAGTATTCTAGTACCTAATAGTGGGATTGAAGCTAAATCAGTCTACATTGTGTAGAATACTGCTTCTT</genome_strand>
        <mrna_strand>TTCTTTTATATAATATGTACTCCATATTTTATTATTCTATCTAGAAAAAGAGAAAGTAGATACAAAATGCAGAAAGTTTGAGACAAAAACTGCAAAATTCCATCAATTAAATCTCAATTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCATAATAATCTTGGTTAGCGTACCTCCAACAACAACTACGCCCAAGTCCCAAACAAGTTGTGATATTGTTAGTACCTCCGAAAGGAAATAATCATCTCAGCAGTGAATTAGTAGAGTGTCTAGTTGCTTTCTGACACATGGGAAGTATTGAGGATGGGAAGTCTTCTACGCCTGAGAAATCATTTTCGACTGCACCT................................................................................................................................................................GATCAAAGCAATTTTCATGTGTATCCTGATTGGGCTGCGATGCAG........................................................................................GCATATTATGGTCATCGAGTAGCTGTACCTCCATATGTTAATTCTGCTGTTGCACCTGGTCATGCTCCTCATCCTTACATGTGGGGCCCGCTACCG.....................................................................................................................CCTATGATGCCACCTTTTGGCACACCATATGCAGGAGTCTATGCACATGGTGGTGTTTATCCGCACCCTGGAAGTCCTATTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCCGTCCTCAGGCACATGGAATGACATCATCTCCTGCTGTTAGCCAAACCATG..............................................................................................................................................................AATACTGCTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E479927" ref_strand="+" ref_description="SGN-E479927 [cSTD-11-L10]">
      <seq>attaaatctcaatttaagttggcacaataatcttggttagcgtacctccaaccaaaactacacccaagtcccaaaaaagttgtgaatattgttagtacctccgaaaggaaataatcatctcagcagtgaattagtagaagtgtctagttgctttctgacacatgggaaatattgaggatgggaagtcttctacgcctgagaaatcattttcgactgcaccagatcaaagcaattttcatgtgtatcctgattgggctgcgatgcaggcatattatggtcatcgagtagctgtacctccaaatgttaattctgctgttgcacctggtcatgctcctcatccttacatgtggggcccgctaccgcctatgatgccaccttatggcacaccatatgcaggagtctatgcacatggtggtgtttatccgcaccctgtgagttcctattgtgtcccgtcctcangcacatggaatgacatcatctcctgctgttagccaaaccatgaatactgcttctttgagtatggatgcttctgctaagtcttcggggaactctgatcaaggcttgacgagtcagtcaaagggtttaatgggcttggaatgtcaattgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="52684" stop="56354"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="52984" g_stop="53001" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="53002" i_stop="53942" i_length="941">
            <donor d_prob="0.939" d_score="0.00"/>
            <acceptor a_prob="0.989" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="53943" g_stop="54143" g_length="201"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="221" r_length="203" r_score="0.905"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54144" i_stop="54303" i_length="160">
            <donor d_prob="0.994" d_score="0.96"/>
            <acceptor a_prob="0.968" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="54304" g_stop="54348" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="266" r_length="45" r_score="0.956"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="54349" i_stop="54436" i_length="88">
            <donor d_prob="0.938" d_score="0.96"/>
            <acceptor a_prob="0.982" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="54437" g_stop="54532" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="362" r_length="96" r_score="0.948"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="54533" i_stop="54649" i_length="117">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.681" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="54650" g_stop="54730" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="363" r_stop="444" r_length="82" r_score="0.938"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="54731" i_stop="55732" i_length="1002">
            <donor d_prob="0.954" d_score="0.94"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="55733" g_stop="55789" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="445" r_stop="501" r_length="57" r_score="0.895"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="55790" i_stop="55947" i_length="158">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.337" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="55948" g_stop="56054" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="502" r_stop="607" r_length="106" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E479927" ref_strand="+">
        <total_alignment_score>0.924</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E479927" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="52984" e_stop="53001"/>
          <exon e_start="53943" e_stop="54143"/>
          <exon e_start="54304" e_stop="54348"/>
          <exon e_start="54437" e_stop="54532"/>
          <exon e_start="54650" e_stop="54730"/>
          <exon e_start="55733" e_stop="55789"/>
          <exon e_start="55948" e_stop="56054"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTAAATCTCAATTTAAGGTATGTTCAAATTTAGATTTATGATTTTTGGGAAAAGTTTTGGATTATGAAGCTGAATTTAAGTTTGATCTCTCTTAAAAAAAAAAATATTTGAGACCTAAAATACTTTGAGCTATTAGAAATGGTATAAAATTACTCTTTATCAACGTATTAGTTCTGAAATACCCTTAACGATAGGTATTTTTATACCATTTTCAATAGTTACGAGGATATGTTATGTTCTTATAATAATGCATAGAAATTAAGAAAATTTTTTATGTTTTATTCTTCCTTTGTTTGAATATTGATATTTTCTAGTGGTAATTTAAGTAGGTTGAGGAGGACTAGATGGTAATTTCATCCTATGTAATTCTATACTCAATTTTTTTTGGTAAAGTTCGTCTCTTATGTTAGGACTATGAGTGGACGATTATGCCCCTGTAAGAAAATGAGTCTATTTTAAAAGGACAGTGCATCAAGAGAGAATGGCTAAGGGTGATGATAAAGAATTAATTTCTTGAAGGTTTGAAAAATATAAGAGTAAAAACTTATACTGACAGGGATGGATCAATCACTTATATTCTGTGTTAAAATTTAGGTGTCATAAATTTGTAGCATAAATACCAAGTAGTGTGTTAGTTATACATAGATTGAAAAAGTGTATTCGATAAGGTATTTGGAATTTACTAAGTTAATGCATCTATTATATTTTCTAATAGACTATACCGAACGATCCCTTAGAAGTTTCGGCTATAGAAACTATTTCATGAAGTGTATCTTTGAAGATGTTACATAGTATATATTTGCCTTTAAGAGTAATTGAGATTCTTTAGCTAAATATTAGCTATTTAATGTGCTATGCATTGTACTGGAATATATTAGGATGGATGAAACTTATTTGCTTCTCTGCTTTGGATGGTTTTGTTGTTGCGCATTGTTTGACAGGGCTTTGTTTTATGCAGTTGGCATAATAATCTTGGTTAGCATACCTCCAACAACTACTACGCGCAAGTCCCAAACAAGTTGT-TATATTGTTAGTACCTCCTAAAGGAAATAATCATCTCATCAGTGAATTTGTAG-AGTGTCTAGTTGTTTTCTGACACATGGGAAATATTGAGGACAGGAAGTCTTCTACGCCTGAGAAATCATTTTCGACTGCACCAGTAAGCAAATACAGAATTGTGTATTGTTTATTATGTGTAGAGTGTTTGATATTGTTCTCTCTGTCGCTCGTGTCTTTAAATGTCCTCGATGTTGCTTTCCTCTTTTAGTATTATCTTTTCTTTGAAATTCATCCCGGTAAATGTCTTCATGTATTGACAGGATCAAAGCAGTTTTCATGTGTATCCTGATTGGGCTGTGATGCAGGTTTAATCATTTTCTGCCATGCTGTTAGATATTATTACCATAGATCTAGTGGTTATTGACATTTTTATGTAAATTGCTAAATCTTCAGGCATATTATGCCCATCGAGTAGCTGTACCTCCATATGTTAGTTCTGCTGTTGCACCTGGTCATGCTCCTCATCCTTATATGTGGGGCCCGCTACCGGTACTTTCTGGTCTGAACTTTTCTTTTATATTCTTGCAAGTTGTTTAATTAAAGTGCTAGGAAATAGTTTATATGGATTCGCCGACACGAGGTCTAACTAGAATTCTCCTTTTTTAGCCTATGTTTCCACCTTATGGCACACCATATGCAGGAGTCTATGCACATGGTGGTGTTTATCCGCACTCTG-GAGTTCCTATTGTGAGTCCCCATTCTAGCATCTCCATTCTTTTTCTTTTCTGAAATCAAGAGTGCTTTCTGATAACTGTGCTTTCTAAAGTTCTCTACATGTAATATCATAATAAGCCACTGGAAACAGCAGAACCAATGCTGTGAGCAGCGTTCGCCTCGGTTATTACCTAACGAGAAAAGCCGATGCGAAAGTAGTCCTTTACGCTAGGAAACGCCAGAGAGACTGACCTCTTCTAACTAGTTTTGTTCACAGTTTGCTAGGCCATCACATTTAGTTTAGATTATAGGGCATTGATCAACAGCTTTAACGAGCTAGGTCCACTAATTTCTTAAAGGAACTGAGAAAAGTAACTACGGAGGAAGAAGGGAAGGTTATGACTATGTTAAAAATAAATGGTGTGTGAAAAACAAACAGTTAACGGATTTAGGAATCATGCCCTTCTATTGGTCATACAATGATTTCCAGTAGCTACCTTATCAGGATTTATGAGTGTACTCCTCAGCTGTTGGTAAAAAAAATGTTGTATTTGTTGTGTTTCTTAGTATGATGGAGAAGGTTATTTTTATTATAAATTCAGTTGAATATTTACGGATTGGCTCAAGCTAACGGTGATCAATCATAGAGGGTAGTCATATCAAAACTTGATCCACCTTTACAAGTTCAACAAAGTGGGGTCTGTGGAGGGTAGAGTGTACACAGGTCTTACCCCTATTCGTGGAGGTAGAGAAGTTATTTCCGAAAGATCCTCGGCTCAAGTGAAGGAAAACAAAGTAGTAATGAAAAGGAAAAACGATAGTGAAGAAAAAATACAACTAAAGGAAAGCAGTAAAGAGCATAAAGTACCAAACAACAAAATAGTACGTTCACCTAAACATAATAAACAATGGATAGCAAAGCATATGACTGTATATTTATGTAGAGTTACTGTAATGTATGACTCTAGTGACAAAAGTTGTGGCTGAAACATACGAATATGCCCATTTATAGATTATTCTTTTTTCTGATTTCAGGTGTTCCGTCCTCAGGCGCATGGAATGACATCATCTCCCGTTGTTAGCCAAACCAAGGTATATGTTACTTTTAGTTCTTTGACTTCTTTCAGTGTTTATGAACTTATTTGCTTCTGGAAAATGCCCGAACTGACAGATTATGTTCCCTTTAAGCTCAATGTAGTATTCTAGTACCTAATAGTGGGATTGAAGCTAAATCAGTCTACATTGTGTAGAATACTGCTTCTTTGGGTATGGATACTTCTGCTAAGTCTTCGGGGAACTCTGATCAAGGCTTGACGAGTCAGTCAAAAGGGTTTGATGGGCTTGGAATCTCAATAGG</genome_strand>
        <mrna_strand>ATTAAATCTCAATTTAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCACAATAATCTTGGTTAGCGTACCTCCAACCAAAACTACACCCAAGTCCCAAAAAAGTTGTGAATATTGTTAGTACCTCCGAAAGGAAATAATCATCTCAGCAGTGAATTAGTAGAAGTGTCTAGTTGCTTTCTGACACATGGGAAATATTGAGGATGGGAAGTCTTCTACGCCTGAGAAATCATTTTCGACTGCACCA................................................................................................................................................................GATCAAAGCAATTTTCATGTGTATCCTGATTGGGCTGCGATGCAG........................................................................................GCATATTATGGTCATCGAGTAGCTGTACCTCCAAATGTTAATTCTGCTGTTGCACCTGGTCATGCTCCTCATCCTTACATGTGGGGCCCGCTACCG.....................................................................................................................CCTATGATGCCACCTTATGGCACACCATATGCAGGAGTCTATGCACATGGTGGTGTTTATCCGCACCCTGTGAGTTCCTATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCCGTCCTCANGCACATGGAATGACATCATCTCCTGCTGTTAGCCAAACCATG..............................................................................................................................................................AATACTGCTTCTTTGAGTATGGATGCTTCTGCTAAGTCTTCGGGGAACTCTGATCAAGGCTTGACGAGTCAGTC-AAAGGGTTTAATGGGCTTGGAATGTCAATTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E478626" ref_strand="+" ref_description="SGN-E478626 [cSTD-6-C2]">
      <seq>ccgcctatgatgccaccttttggcacaccatatgcaggagtctatgcacatggtggtgtttatccgcaccctggagttcctattgtgtcccgtcctaggcacatggaatgacatcatctcctgctgttagccaaaccatgaatactgcttctttgagtatggatgcttctgctaagtcttcggggaactctgatcaaggcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="54349" stop="56311"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="54530" g_stop="54532" g_length="3"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="3" r_length="3" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="54533" i_stop="54649" i_length="117">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.681" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="54650" g_stop="54730" g_length="81"/>
          <reference_exon_boundary r_type="cDNA" r_start="4" r_stop="84" r_length="81" r_score="0.951"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="54731" i_stop="55732" i_length="1002">
            <donor d_prob="0.954" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="55733" g_stop="55789" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="140" r_length="56" r_score="0.895"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="55790" i_stop="55947" i_length="158">
            <donor d_prob="1.000" d_score="0.90"/>
            <acceptor a_prob="0.337" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="55948" g_stop="56011" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="204" r_length="64" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E478626" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>205</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E478626" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="54530" e_stop="54532"/>
          <exon e_start="54650" e_stop="54730"/>
          <exon e_start="55733" e_stop="55789"/>
          <exon e_start="55948" e_stop="56011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGGTACTTTCTGGTCTGAACTTTTCTTTTATATTCTTGCAAGTTGTTTAATTAAAGTGCTAGGAAATAGTTTATATGGATTCGCCGACACGAGGTCTAACTAGAATTCTCCTTTTTTAGCCTATGTTTCCACCTTATGGCACACCATATGCAGGAGTCTATGCACATGGTGGTGTTTATCCGCACTCTGGAGTTCCTATTGTGAGTCCCCATTCTAGCATCTCCATTCTTTTTCTTTTCTGAAATCAAGAGTGCTTTCTGATAACTGTGCTTTCTAAAGTTCTCTACATGTAATATCATAATAAGCCACTGGAAACAGCAGAACCAATGCTGTGAGCAGCGTTCGCCTCGGTTATTACCTAACGAGAAAAGCCGATGCGAAAGTAGTCCTTTACGCTAGGAAACGCCAGAGAGACTGACCTCTTCTAACTAGTTTTGTTCACAGTTTGCTAGGCCATCACATTTAGTTTAGATTATAGGGCATTGATCAACAGCTTTAACGAGCTAGGTCCACTAATTTCTTAAAGGAACTGAGAAAAGTAACTACGGAGGAAGAAGGGAAGGTTATGACTATGTTAAAAATAAATGGTGTGTGAAAAACAAACAGTTAACGGATTTAGGAATCATGCCCTTCTATTGGTCATACAATGATTTCCAGTAGCTACCTTATCAGGATTTATGAGTGTACTCCTCAGCTGTTGGTAAAAAAAATGTTGTATTTGTTGTGTTTCTTAGTATGATGGAGAAGGTTATTTTTATTATAAATTCAGTTGAATATTTACGGATTGGCTCAAGCTAACGGTGATCAATCATAGAGGGTAGTCATATCAAAACTTGATCCACCTTTACAAGTTCAACAAAGTGGGGTCTGTGGAGGGTAGAGTGTACACAGGTCTTACCCCTATTCGTGGAGGTAGAGAAGTTATTTCCGAAAGATCCTCGGCTCAAGTGAAGGAAAACAAAGTAGTAATGAAAAGGAAAAACGATAGTGAAGAAAAAATACAACTAAAGGAAAGCAGTAAAGAGCATAAAGTACCAAACAACAAAATAGTACGTTCACCTAAACATAATAAACAATGGATAGCAAAGCATATGACTGTATATTTATGTAGAGTTACTGTAATGTATGACTCTAGTGACAAAAGTTGTGGCTGAAACATACGAATATGCCCATTTATAGATTATTCTTTTTTCTGATTTCAGGTGTTCCGTCCTCAGGCGCATGGAATGACATCATCTCCCGTTGTTAGCCAAACCAAGGTATATGTTACTTTTAGTTCTTTGACTTCTTTCAGTGTTTATGAACTTATTTGCTTCTGGAAAATGCCCGAACTGACAGATTATGTTCCCTTTAAGCTCAATGTAGTATTCTAGTACCTAATAGTGGGATTGAAGCTAAATCAGTCTACATTGTGTAGAATACTGCTTCTTTGGGTATGGATACTTCTGCTAAGTCTTCGGGGAACTCTGATCAAGGCTTGA</genome_strand>
        <mrna_strand>CCG.....................................................................................................................CCTATGATGCCACCTTTTGGCACACCATATGCAGGAGTCTATGCACATGGTGGTGTTTATCCGCACCCTGGAGTTCCTATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCCGTCCT-AGGCACATGGAATGACATCATCTCCTGCTGTTAGCCAAACCATG..............................................................................................................................................................AATACTGCTTCTTTGAGTATGGATGCTTCTGCTAAGTCTTCGGGGAACTCTGATCAAGGCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E430521" ref_strand="+" ref_description="SGN-E430521 [STM-53-F22]">
      <seq>gaggagaaaagaagccgcgaggcaactcctaataactctggtgacttaaccgccaaagactgtgcagtccacaacgcactagggaagtaaatggggcctcagagaagggaattggtgtagctgttaatcctggtaatatagcagaaaaattagcgggaacagcattttctcctatcatgactactactccactagtaaaatcaagtccaacttcacgaatcagtcctgcagtgccaggcgaagtctggttacagaatgaacgtgagctgaagcgggagaagaggaagcagtctaatcgagaatctgcaaggagatcaaggttgagaaaacaggcggaagctgaagaattggcagtgcaggttcaatctttaacctctgaaaatttggcactcagattagaaataaacaaattcaccgaaaactctgagaaactaaaggttgaaaatgctgctttaatggagagactgaaaaacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="56378" stop="58693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56673" g_stop="56710" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56711" i_stop="57678" i_length="968">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.82"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57679" g_stop="57896" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="254" r_length="217" r_score="0.894"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57897" i_stop="58048" i_length="152">
            <donor d_prob="0.993" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58049" g_stop="58126" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="332" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58127" i_stop="58260" i_length="134">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58261" g_stop="58386" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="458" r_length="126" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58387" i_stop="58466" i_length="80">
            <donor d_prob="0.906" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58467" g_stop="58484" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="476" r_length="18" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E430521" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E430521" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56673" e_stop="56710"/>
          <exon e_start="57679" e_stop="57896"/>
          <exon e_start="58049" e_stop="58126"/>
          <exon e_start="58261" e_stop="58386"/>
          <exon e_start="58467" e_stop="58484"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGTAAGAAAAGAAGCCGCGAGTCAACTCCTAATAACTGTAAGAGTTTGGTCTCTTTCTCACTTCCTATTCAAATTTCAATAGTTATAGGATTTGCATATTTGTGAACTCTACAGTTTCTCCAGAATGAACTTCAAGGGTTCTTTCTTCAAGTCAATTCTAATTTCGACTTCCATATTTGTTGACGTTAGTGTCAACTGTCAAGTGTTGTAAGGTCATGAGCTTAAGACTTTTGAGGGTGGTGTCAGGTACATGCAACAAAAGAAATTGTGTTAATTTCTTAATGGCATGATACATAATGACGCTTTAACTTTGCCTCACTTGGCAATTAAACACTCCAACTTTGAGTAAACACATGTAGACACCTCAACTCGTCTCCACTGTGTTAGTGGAACACTCCAACTCATCGAGACATCTCCAAAGTTTATGTGTCATTTCAGCATCGGGTGTCAATGATGGGGACGAGTTGGAGTGTTTAGTTGTCAATTGGGACCAAATTGAAGTGTCACAATGTGCACTATCAAAGTTGGAGTGCTTACTTGCCAGTTGAGGTCAAGTTTGGGTGTCGGTTTATGTATTATGCCTTGCTTAATAGATAAATCAGTCTTGAAGCTTGTGATATTGCAGCTTCAACCTTAAAAGGAAATGCTCGAAGCGGGTACATTACAGCCGTCTGTACTCTATTCCTATAAACTTAGTTTTCAATCTACTCCTGGTTCTTTTGTCAAAATTTCTCTATTATTATTGAAATACATGACTATATTACTGGTAAAAGAGTTGGAGTAGATGGTTCGCCTTTCTTTTACCCGTCATTAAATGTGTAGGGTCTTTTGTCATTCTTTTTTCTGGGCACTACAATAATTAGAAGTATCGGTTCTTAAACTTGGTACACTTGATTGCTTCAACATTATTACTCAATGATGCATTTACTGGAGGGTATACAAAAGTGAGAGAAGTCGAGCCTGAAAGTAGTTTGCCTGATTTTTTCTTTTCAAAATCTATTGAAGCTGGTGAAGGAAAAAGTCAAAGAATGTGCAGTCCACAACGTACTAGGGAAGTAAATGGGGCCTCAGAGAATGGAATTGGCATAGCTGTTAATCCTGGTATTATAGCAGAAAAGTTAGCGGGAACAACATTTTCTCCGATTATGACTACTACTCCACTAGTAAAATCTAGTCCAACTTCACAAATCTGTCCTGCAATGCCGGGTGAAGTCTGGTTACAGGTATATGCATGTATCAGATGAACTTTTCTTTTGCTTATTTTGACGTGATGTTGGGTGTCTGCAATGTTTGTTTTAGTGTCTGAACTTGACGAGAACTCTGTTTATCATGTGAAATCTAAGTTTCTAATTGTTGAATGCATTTATATATTCAGAATGAACGTGAGCTGAAGCGGGAGAAGAGGAAGCAGTCTAATCGAGAATCTGCAAGGAGATCAAGGTTGAGAAAGCAGGTAAGATGGAAATGTGCAAATTATTGAATATTTGGATACTGATTTAGTCTTAATATATAGACTATGTTTAATTTACTGTTTGTAGATATTATTTCTGATAAACAATACTTTCTTTTCACCCCTCCTCCCTCCAGGCGGAAGCAGAAGAATTGGCAGTGCAGGTTCAATCTTTAACCTCTGAAAATTTGGCACTCAGATCAGAAATAAACAAATTCACCGAAAACTCTGAGAAACTAAAGTTTGAAAATGTTGGTTTAATGGTATGAGTTCGTCCCTCGGTTATATAGTCTTATGTATTTTCGTTGTTTGGGCTTTACGAAGTATTGTCTTGATTGTACAGGAGAGACTAAAAAACAAG</genome_strand>
        <mrna_strand>GAG-GAGAAAAGAAGCCGCGAGGCAACTCCTAATAACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGTG-ACTTAACCGCCAAAGACTGTGCAGTCCACAACGCACTAGGGAAGTAAATGGGGCCTCAGAGAAGGGAATTGGTGTAGCTGTTAATCCTGGTAATATAGCAGAAAAATTAGCGGGAACAGCATTTTCTCCTATCATGACTACTACTCCACTAGTAAAATCAAGTCCAACTTCACGAATCAGTCCTGCAGTGCCAGGCGAAGTCTGGTTACAG........................................................................................................................................................AATGAACGTGAGCTGAAGCGGGAGAAGAGGAAGCAGTCTAATCGAGAATCTGCAAGGAGATCAAGGTTGAGAAAACAG......................................................................................................................................GCGGAAGCTGAAGAATTGGCAGTGCAGGTTCAATCTTTAACCTCTGAAAATTTGGCACTCAGATTAGAAATAAACAAATTCACCGAAAACTCTGAGAAACTAAAGGTTGAAAATGCTGCTTTAATG................................................................................GAGAGACTGAAAAACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E462010" ref_strand="+" ref_description="SGN-E462010 [cPRO-10-E20]">
      <seq>agaaaagaagccgcgaggcaactcctaataactctggtgacagaaaaagtcaaagactgtgcagtccacaacgcactagggaagtaaatggggcctcagagaagggaattggtgtagctgttaatcctggtaatatagcagaaaaattagcgggaacagcattttctcctatcatgactactactccactagtaaaatcaagtccaacttcacgaatcagtcctgcagtgccaggcgaagtctggttacagaatgaacgtgagctgaagcgggagaagaggaagcagtctaatcgagaatctgcaaggagatcaaggttgagaaaacaggcggaagctgaagaattggcagtgcaggttcaatctttaacctctgaaaatttggcactcagattagaaataaacaaattcaccgaaaactctgagaaactaaaggttgaaaatgctgctttaatggagagactgaaaaacaagcaaggacaagcaaaagaggtaactttaggtatgattgatgataaaaggctgaagcctgttagcacagcagacctactagcaagagtcaacaacaacaatggttcattcaatagaaccaacgaagacggtgaagttcatgatagtacctctggagcaaagcttcatcaactccttgatgccagtcccaggactgatcatgccgtggctgctagatgatcatcgactaatagtaatgacc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="56378" stop="59004"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="56678" g_stop="56710" g_length="33"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="33" r_length="33" r_score="0.970"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="56711" i_stop="57678" i_length="968">
            <donor d_prob="0.983" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="57679" g_stop="57896" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="34" r_stop="251" r_length="218" r_score="0.917"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="57897" i_stop="58048" i_length="152">
            <donor d_prob="0.993" d_score="0.90"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="58049" g_stop="58126" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="329" r_length="78" r_score="0.987"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="58127" i_stop="58260" i_length="134">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.977" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="58261" g_stop="58386" g_length="126"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="455" r_length="126" r_score="0.960"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="58387" i_stop="58466" i_length="80">
            <donor d_prob="0.906" d_score="0.94"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="58467" g_stop="58723" g_length="257"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="711" r_length="256" r_score="0.930"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E462010" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E462010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="56678" e_stop="56710"/>
          <exon e_start="57679" e_stop="57896"/>
          <exon e_start="58049" e_stop="58126"/>
          <exon e_start="58261" e_stop="58386"/>
          <exon e_start="58467" e_stop="58723"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAAGAAGCCGCGAGTCAACTCCTAATAACTGTAAGAGTTTGGTCTCTTTCTCACTTCCTATTCAAATTTCAATAGTTATAGGATTTGCATATTTGTGAACTCTACAGTTTCTCCAGAATGAACTTCAAGGGTTCTTTCTTCAAGTCAATTCTAATTTCGACTTCCATATTTGTTGACGTTAGTGTCAACTGTCAAGTGTTGTAAGGTCATGAGCTTAAGACTTTTGAGGGTGGTGTCAGGTACATGCAACAAAAGAAATTGTGTTAATTTCTTAATGGCATGATACATAATGACGCTTTAACTTTGCCTCACTTGGCAATTAAACACTCCAACTTTGAGTAAACACATGTAGACACCTCAACTCGTCTCCACTGTGTTAGTGGAACACTCCAACTCATCGAGACATCTCCAAAGTTTATGTGTCATTTCAGCATCGGGTGTCAATGATGGGGACGAGTTGGAGTGTTTAGTTGTCAATTGGGACCAAATTGAAGTGTCACAATGTGCACTATCAAAGTTGGAGTGCTTACTTGCCAGTTGAGGTCAAGTTTGGGTGTCGGTTTATGTATTATGCCTTGCTTAATAGATAAATCAGTCTTGAAGCTTGTGATATTGCAGCTTCAACCTTAAAAGGAAATGCTCGAAGCGGGTACATTACAGCCGTCTGTACTCTATTCCTATAAACTTAGTTTTCAATCTACTCCTGGTTCTTTTGTCAAAATTTCTCTATTATTATTGAAATACATGACTATATTACTGGTAAAAGAGTTGGAGTAGATGGTTCGCCTTTCTTTTACCCGTCATTAAATGTGTAGGGTCTTTTGTCATTCTTTTTTCTGGGCACTACAATAATTAGAAGTATCGGTTCTTAAACTTGGTACACTTGATTGCTTCAACATTATTACTCAATGATGCATTTACTGGAGGGTATACAAAAGTGAGAGAAGTCGAGCCTGAAAGTAGTTTGCCTGATTTTTTCTTTTCAAAATCTATTGAAGCTGGTGAAGGAAAAAGTCAAAGAATGTGCAGTCCACAACGTACTAGGGAAGTAAATGGGGCCTCAGAGAATGGAATTGGCATAGCTGTTAATCCTGGTATTATAGCAGAAAAGTTAGCGGGAACAACATTTTCTCCGATTATGACTACTACTCCACTAGTAAAATCTAGTCCAACTTCACAAATCTGTCCTGCAATGCCGGGTGAAGTCTGGTTACAGGTATATGCATGTATCAGATGAACTTTTCTTTTGCTTATTTTGACGTGATGTTGGGTGTCTGCAATGTTTGTTTTAGTGTCTGAACTTGACGAGAACTCTGTTTATCATGTGAAATCTAAGTTTCTAATTGTTGAATGCATTTATATATTCAGAATGAACGTGAGCTGAAGCGGGAGAAGAGGAAGCAGTCTAATCGAGAATCTGCAAGGAGATCAAGGTTGAGAAAGCAGGTAAGATGGAAATGTGCAAATTATTGAATATTTGGATACTGATTTAGTCTTAATATATAGACTATGTTTAATTTACTGTTTGTAGATATTATTTCTGATAAACAATACTTTCTTTTCACCCCTCCTCCCTCCAGGCGGAAGCAGAAGAATTGGCAGTGCAGGTTCAATCTTTAACCTCTGAAAATTTGGCACTCAGATCAGAAATAAACAAATTCACCGAAAACTCTGAGAAACTAAAGTTTGAAAATGTTGGTTTAATGGTATGAGTTCGTCCCTCGGTTATATAGTCTTATGTATTTTCGTTGTTTGGGCTTTACGAAGTATTGTCTTGATTGTACAGGAGAGACTAAAAAACAAGCAAGGACAAGCAAAAGAGGTAACTTTAGGTATGATTGATGATAAGAGGCTGAAGCCTGTTAGCACAGCAGACCTACTAGCAAGAGTCAACAATAACAATGGTTCATTCAGTAGAACCAACGAAGACGGTGAAGTTCATGATAGTACCTCTGGAGCGAAGCTTCATCAACTCCTTGATGCTAGTTCCAGGACTGATCATGCTGTGGCTGCTAGATGATCATAATATTCATGATCATGGCG</genome_strand>
        <mrna_strand>AGAAAAGAAGCCGCGAGGCAACTCCTAATAACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGTGACAGAAAAAGTCAAAGACTGTGCAGTCCACAACGCACTAGGGAAGTAAATGGGGCCTCAGAGAAGGGAATTGGTGTAGCTGTTAATCCTGGTAATATAGCAGAAAAATTAGCGGGAACAGCATTTTCTCCTATCATGACTACTACTCCACTAGTAAAATCAAGTCCAACTTCACGAATCAGTCCTGCAGTGCCAGGCGAAGTCTGGTTACAG........................................................................................................................................................AATGAACGTGAGCTGAAGCGGGAGAAGAGGAAGCAGTCTAATCGAGAATCTGCAAGGAGATCAAGGTTGAGAAAACAG......................................................................................................................................GCGGAAGCTGAAGAATTGGCAGTGCAGGTTCAATCTTTAACCTCTGAAAATTTGGCACTCAGATTAGAAATAAACAAATTCACCGAAAACTCTGAGAAACTAAAGGTTGAAAATGCTGCTTTAATG................................................................................GAGAGACTGAAAAACAAGCAAGGACAAGCAAAAGAGGTAACTTTAGGTATGATTGATGATAAAAGGCTGAAGCCTGTTAGCACAGCAGACCTACTAGCAAGAGTCAACAACAACAATGGTTCATTCAATAGAACCAACGAAGACGGTGAAGTTCATGATAGTACCTCTGGAGCAAAGCTTCATCAACTCCTTGATGCCAGTCCCAGGACTGATCATGCCGTGGCTGCTAGATGATCAT-CGACTAATAGTAATGACC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E716018" ref_strand="+" ref_description="SGN-E716018 [FB15DF04]">
      <seq>aaaaaaaacagctgcaaataaaaagaaaaaaaaaagtgatatattcctcaacccaatttcatctactagtttcgcgtaaagagtcagcagcttttccgattttctgatcaaattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttgactggttctgttggtttgacgatcaatttgtgtaattaattccatacttcaaaagccttttgtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63927" stop="68143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64227" g_stop="64337" g_length="111"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="111" r_length="111" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="203" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="204" r_stop="331" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="332" r_stop="436" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67842" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="437" r_stop="853" r_length="417" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="854" polyA_stop="864"/>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E716018" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E716018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64227" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAACAGCTGCAAATAAAAAGAAAAAAAAAAGTGATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAA</genome_strand>
        <mrna_strand>AAAAAAAACAGCTGCAAATAAAAAGAAAAAAAAAAGTGATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAA...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGGTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E719483" ref_strand="+" ref_description="SGN-E719483 [FC08AA07]">
      <seq>ggcaaataaaaagaaaaccaatagtgatatattcctcaacccaatttcatctactagtttcgcgtaaagagtcaccagcttttccaattttctgatcaaattcaaatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccaaaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacaaaggaaccgccaggagttggacccaaaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaaggttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataaggctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttgactgtttcggttggtttgacgatcaatttgtgtaattaattccatacttcaaaagcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63940" stop="68135"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64239" g_stop="64337" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.929"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="191" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="192" r_stop="319" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="320" r_stop="424" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67835" g_length="410"/>
          <reference_exon_boundary r_type="cDNA" r_start="425" r_stop="834" r_length="410" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E719483" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>834</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719483" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64239" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67835"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCAAATAAAAAGAAAAAAAAAAGTGATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCT</genome_strand>
        <mrna_strand>GGCAAATAAAAAGAAAACCAATAGTGATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCACCAGCTTTTCCAATTTTCTGATCAA...............................................................................................ATTCAAATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAAAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACAAAGGAACCGCCAGGAGTTGGACCCAAAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAAGGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAAGGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCGGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E724991" ref_strand="+" ref_description="SGN-E724991 [FC25DA06]">
      <seq>cccatggggatccgatggcaaataaaaagaaaaaaaaaagtgatatattcctcaacccaatttcatctactagtttcgcgtaaagagtcagcagcttttccgattttctgatcaaattcaaatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggaaaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacaaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacaaaggaaccgccaggagttggacccaaaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaaggttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttgactgtttctgttggtttgacgatcaatttgtgtaattaattccatacttcaaaagccttttgtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63933" stop="68143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64240" g_stop="64337" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="115" r_length="98" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="116" r_stop="207" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="335" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="336" r_stop="440" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67843" g_length="418"/>
          <reference_exon_boundary r_type="cDNA" r_start="441" r_stop="858" r_length="418" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E724991" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>841</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E724991" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64240" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67843"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAAATAAAAAGAAAAAAAAAAGTGATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAAA</genome_strand>
        <mrna_strand>GCAAATAAAAAGAAAAAAAAAAGTGATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAA...............................................................................................ATTCAAATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAAAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACAACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACAAAGGAACCGCCAGGAGTTGGACCCAAAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAAGGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E311018" ref_strand="+" ref_description="SGN-E311018 [cLEZ-17-B13]">
      <seq>aaaaaaaaagtgatatattcctcaacccaatttcatctactagtttcgcgtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63953" stop="67897"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64253" g_stop="64337" g_length="85"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="85" r_length="85" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="86" r_stop="177" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="178" r_stop="305" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="410" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67597" g_length="172"/>
          <reference_exon_boundary r_type="cDNA" r_start="411" r_stop="582" r_length="172" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E311018" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>582</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E311018" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64253" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67597"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAAGTGATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACT</genome_strand>
        <mrna_strand>AAAAAAAAAGTGATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E346495" ref_strand="+" ref_description="SGN-E346495 [cTOF-23-H18]">
      <seq>aaaaaaaagtgatatattcctcaacccaatttcatctactagtttcgcgtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattangcgttgcttctctacaggaagaacgataatgctttgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63954" stop="68009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64254" g_stop="64337" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="176" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="177" r_stop="304" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="409" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67709" g_length="284"/>
          <reference_exon_boundary r_type="cDNA" r_start="410" r_stop="693" r_length="284" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E346495" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>693</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E346495" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64254" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAAAGTGATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAAT</genome_strand>
        <mrna_strand>AAAAAAAAGTGATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTANGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246396" ref_strand="+" ref_description="SGN-E246396 [cLEF-52-L11]">
      <seq>aaaaaagtgatatattcctcaacccaatttcatctactagtttcgcgtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63956" stop="67816"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64256" g_stop="64337" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="174" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="302" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="407" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67516" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="408" r_stop="498" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E246396" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>498</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246396" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64256" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGTGATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGT</genome_strand>
        <mrna_strand>AAAAAAGTGATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246546" ref_strand="+" ref_description="SGN-E246546 [cLEF-45-M10]">
      <seq>aaaaaagtgatatattcctcaacccaatttcatctactagtttcgcgtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatggcaatgggaagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63956" stop="67802"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64256" g_stop="64337" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="174" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="302" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="303" r_stop="408" r_length="106" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67502" g_length="77"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="485" r_length="77" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E246546" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246546" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64256" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAAAGTGATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGG-AGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTA</genome_strand>
        <mrna_strand>AAAAAAGTGATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATGGCAATGGGAAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E597300" ref_strand="+" ref_description="SGN-E597300 [40801]">
      <seq>aaaagtgatatattcctcaacccaattttcatctacaagtcgtgtaaagattcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaagatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctagaataatggggccctctgatagcccttatgctgggggtgtttatttggtcactatccgttttcctccggattatccattcaaacctcctaaggttgcctttaggacaaaagttttccatccaaatatcaatagtaatgggagtatatgcttggacatactgaaggagcagtggagccctgccttaactatttccaaggttttgcttttcaatttgctcgcttttgacggacccaaaccccgatgacccattggttcctgagattgctcacatgtacaagacagacaagtctaaatacgaaggaactgccaggagttggacccacaagtatgccatgggttaaaacatttaaccttatgatggcttgaattgatataaacaaaaacaaatttcaaatgtttcgtcttctctattctccattaacaatgtgtagaatagcattaggcgttgctcctctacaggaagaacgatgatgctttgaatttcttgatgtatgaatgcgaatatttgaatttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63958" stop="68042"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64258" g_stop="64337" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.913"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="171" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="172" r_stop="299" r_length="128" r_score="0.961"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="404" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67742" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="722" r_length="318" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E597300" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>722</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E597300" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64258" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67742"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTGATATATTCCTCAACCCAA-TTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGC-TTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTT</genome_strand>
        <mrna_strand>AAAAGTGATATATTCCTCAACCCAATTTTCATCTACAAG--TCGTGTAAAGATTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAAGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTAGAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTATTTGGTCACTATCCGTTTTCCTCCGGATTATCCATTCAAACCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGTAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCCTTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTTCAATTTGCTCGCTTTTGACGGACCCAAACCCCGATGACCCATTGGTTCCTGAGATTGCTCACATGTACAAGACAGACAAGTCTAAATACGAAGGAACTGCCAGGAGTTGGACCCACAAGTATGCCATGGGTTAAAACATTTAACCTTATGATGGCTTGAATTGATATAAACAAAAACAAATTTCAAATGTTTCGTCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTCCTCTACAGGAAGAACGATGATGCTTTGAATTTCTTGATGTATGAATGCGAATATTTGAATTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E273461" ref_strand="+" ref_description="SGN-E273461 [cLEN-3-L5]">
      <seq>aaaagtgatatattcctcaacccaatttcatctactagtttcgcgtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63958" stop="67800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64258" g_stop="64337" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="172" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="300" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="405" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67500" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="406" r_stop="480" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E273461" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273461" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64258" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTGATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATG</genome_strand>
        <mrna_strand>AAAAGTGATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337558" ref_strand="+" ref_description="SGN-E337558 [cTOE-11-I2]">
      <seq>aaaagtgatatattcctcaacccaatttcatctactagtttcgcgtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaagacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63958" stop="67243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64258" g_stop="64337" g_length="80"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="80" r_length="80" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="81" r_stop="172" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="300" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66943" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="301" r_stop="400" r_length="100" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E337558" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E337558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64258" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66943"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGTGATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTT</genome_strand>
        <mrna_strand>AAAAGTGATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAAGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E255029" ref_strand="+" ref_description="SGN-E255029 [cLEG-31-G23]">
      <seq>aagtgatatattcctcaacccaatttcatctactagtttcgcgtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggtcctttcttacctttatctgctgagcaataatacaagctatgaaaacatacctattccgaggcttgggaccttcatgatataagtgccttttcaaatagattttgattcattagctaattgtgtataatctgtaggatagctaatgaaaatttatcgactctttaaaaggggaagatcgtttaattgggcatcatag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63960" stop="67445"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64260" g_stop="64337" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="170" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="298" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="67145" g_length="302"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="601" r_length="303" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E255029" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>600</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255029" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64260" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="67145"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAA-GGGAAGATCGTTTAATTGGGCATCATAG</genome_strand>
        <mrna_strand>AAGTGATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGGAAGATCGTTTAATTGGGCATCATAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256775" ref_strand="+" ref_description="SGN-E256775 [cLEG-40-K15]">
      <seq>aagtgatatattcctcaacccaatttcatctactagtttcgcgtggagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggtcctttcttacctttatctgctgagcaataatacaagctatgaaaacatacctattccgaggcttgggaccttcatgatataagtgccttttcaaatagattttgattcattagctaattgtgtataatctgtaggatagctaatggaaaatttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63960" stop="67404"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64260" g_stop="64337" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="170" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="298" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="67104" g_length="261"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="560" r_length="262" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E256775" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64260" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="67104"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAAT-GAAAATTTAT</genome_strand>
        <mrna_strand>AAGTGATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTGGAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGGAAAATTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375692" ref_strand="+" ref_description="SGN-E375692 [TUS-35-A23]">
      <seq>aagtgatatattcctcaacccaatttcatctactagtttcgcgtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63960" stop="67212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64260" g_stop="64337" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="170" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="298" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66912" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="367" r_length="69" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E375692" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>367</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64260" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTG</genome_strand>
        <mrna_strand>AAGTGATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375688" ref_strand="+" ref_description="SGN-E375688 [TUS-35-A17]">
      <seq>aagtgatatattcctcaacccaatttcatctactagtttcgcgtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63960" stop="66009"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64260" g_stop="64337" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="78" r_length="78" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="79" r_stop="170" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65709" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="295" r_length="125" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E375688" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>295</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375688" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64260" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65709"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTGATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCT</genome_strand>
        <mrna_strand>AAGTGATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E351493" ref_strand="+" ref_description="SGN-E351493 [cTOS-12-E23]">
      <seq>tgatatattcctcaacccaatttcatctactagtttcgcgtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaacaaatttcaaatgttttatcttctctattctccattaacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63963" stop="67953"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64263" g_stop="64337" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="167" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="168" r_stop="295" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="400" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67653" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="401" r_stop="627" r_length="227" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E351493" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>628</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E351493" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64263" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67653"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAAT</genome_strand>
        <mrna_strand>TGATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAAC-AAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E247985" ref_strand="+" ref_description="SGN-E247985 [cLEF-47-G11]">
      <seq>gatatattcctcaacccaatttcatctactagtttcgcgtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63964" stop="67800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64264" g_stop="64337" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="166" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="294" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="399" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67500" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="474" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E247985" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E247985" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64264" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATG</genome_strand>
        <mrna_strand>GATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E276559" ref_strand="+" ref_description="SGN-E276559 [cLEN-17-B13]">
      <seq>gatatattcctcaacccaatttcatctactagtttcgcgtaaagagtccgcggcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63964" stop="65981"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64264" g_stop="64337" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="74" r_length="74" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="75" r_stop="166" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65681" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="167" r_stop="263" r_length="97" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E276559" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>263</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276559" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64264" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65681"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTT</genome_strand>
        <mrna_strand>GATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCCGCGGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270068" ref_strand="+" ref_description="SGN-E270068 [cLEM-7-K21]">
      <seq>atatattcctcaacccaatttcatctactagtttcgcgtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63965" stop="67938"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64265" g_stop="64337" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="165" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="293" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="294" r_stop="398" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67638" g_length="213"/>
          <reference_exon_boundary r_type="cDNA" r_start="399" r_stop="611" r_length="213" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E270068" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270068" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64265" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67638"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTA</genome_strand>
        <mrna_strand>ATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E271287" ref_strand="+" ref_description="SGN-E271287 [cLEM-5-J23]">
      <seq>atatattcctcaacccaatttcatctactagtttcgcgtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgccgcgctggccctgttggagaggacatgtttcactggcaggctaccaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63965" stop="67800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64265" g_stop="64337" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="73" r_length="73" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="74" r_stop="165" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="166" r_stop="294" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="399" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67500" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="400" r_stop="474" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E271287" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>473</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E271287" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64265" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTA-CAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATG</genome_strand>
        <mrna_strand>ATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCCGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACCAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E735193" ref_strand="+" ref_description="SGN-E735193 [LB14CG04]">
      <seq>attcctcaacccaatttcatctactagtttcgcgtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63969" stop="68077"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64269" g_stop="64337" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="161" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="289" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="290" r_stop="394" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67777" g_length="352"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="746" r_length="352" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E735193" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E735193" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64269" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67777"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTG</genome_strand>
        <mrna_strand>ATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343979" ref_strand="+" ref_description="SGN-E343979 [cTOF-12-E20]">
      <seq>ttcctcaacccaatttcatctactagtttcgcgtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccataacaatgtgtagaatangcattaggcgttgcttctctacaggaagaacgataatgctttgnaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaaagcgtatgtatctgctttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63970" stop="68075"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64270" g_stop="64337" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="160" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="288" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="393" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67775" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="394" r_stop="745" r_length="352" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E343979" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343979" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64270" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67775"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATA-GCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTG-AATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGG-AAGCGTATGTATCTGCTTTT</genome_strand>
        <mrna_strand>TTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCA-TAACAATGTGTAGAATANGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGNAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAAGCGTATGTATCTGCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E327481" ref_strand="+" ref_description="SGN-E327481 [cTOC-19-D14]">
      <seq>ttcctcaacccaatttcatctactagtttcgcgtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggtcctttcttacctttatctgctgagcaataatacaagctatgaaaacatacctattccgaggcttgggaccttcatgatataagtgccttttcaaatagattttgattcattagctaattgtgtataatctgtaggatagctaatgaaaatttatcgactctttnaaagggaagatcgtttaattgggcatcatagataataggtgacctaatattattccttaatagctttagggagcaatgatgnaaacattttaaccgtctaatgtgtccttcataaagcactttgattttggttgcatagggatagatattgtccccgattctctgctagtagcatcatttgttttttttctgaaattatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63970" stop="67614"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64270" g_stop="64337" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="68" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="160" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="288" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="67314" g_length="471"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="759" r_length="471" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E327481" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>759</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E327481" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64270" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="67314"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATG</genome_strand>
        <mrna_strand>TTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTNAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGNAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGGATAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E693509" ref_strand="+" ref_description="SGN-E693509 [LH_Ea01I03](-)">
      <seq>cctcgtgccgaattcggcacgaggcctcaacccaatttcatctactagtttcgcgtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggcaacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgatgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaattgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63972" stop="68008"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64272" g_stop="64337" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="90" r_length="66" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="91" r_stop="182" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="183" r_stop="310" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="311" r_stop="415" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67708" g_length="283"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="698" r_length="283" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E693509" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>674</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E693509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64272" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67708"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAA</genome_strand>
        <mrna_strand>CCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCAACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGATGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAATTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E689669" ref_strand="+" ref_description="SGN-E689669 [LH_Ea01I03]">
      <seq>cacttatcgtgccgaattcggnacgaggcctcaacccaatcccttcaactagtttcgcgtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccggaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggcaacaataatggggccctctgatagcccttatgctgggggtgcttttttggtcacgatccattttcctccggattatcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63972" stop="65997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64272" g_stop="64337" g_length="66"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="94" r_length="66" r_score="0.939"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="95" r_stop="186" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65697" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="187" r_stop="299" r_length="113" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E689669" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>271</cumulative_length_of_scored_exons>
        <coverage percentage="0.906" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E689669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64272" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCA</genome_strand>
        <mrna_strand>CCTCAACCCAATCCCTTCAACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCGGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCAACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGCTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E206982" ref_strand="+" ref_description="SGN-E206982 [cLEC-33-M4]">
      <seq>ctcaacccaatttcatctactagtttcgcgtaaagagtcagcagcttttccgattttctgatcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63973" stop="67823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64273" g_stop="64337" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64438" i_length="101">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.993" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64439" g_stop="64524" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="151" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="152" r_stop="279" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="280" r_stop="384" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67523" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="385" r_stop="482" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E206982" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>482</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E206982" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64273" e_stop="64337"/>
          <exon e_start="64439" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATA</genome_strand>
        <mrna_strand>CTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG.....................................................................................................ATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E208682" ref_strand="+" ref_description="SGN-E208682 [cLEC-39-J5]">
      <seq>ctcaacccaatttcatctactagtttcgcgtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63973" stop="67800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64273" g_stop="64337" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="65" r_length="65" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="66" r_stop="157" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="158" r_stop="285" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="390" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67500" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="465" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E208682" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>465</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E208682" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64273" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATG</genome_strand>
        <mrna_strand>CTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E250814" ref_strand="+" ref_description="SGN-E250814 [cLEG-13-K1]">
      <seq>tcaacccaatttcatctactagtttcgcgtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63974" stop="67948"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64274" g_stop="64337" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="156" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="284" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="389" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67648" g_length="223"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="612" r_length="223" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E250814" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>612</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E250814" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64274" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67648"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTA</genome_strand>
        <mrna_strand>TCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E719368" ref_strand="+" ref_description="SGN-E719368 [FC07CE12]">
      <seq>gaacccaatttcatccactagtttcgcgtaaagagtcagcagcttttccgattttccgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgttttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccgggagttggacccaaaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtangtatctgctttttgactgtttctgttggtttgaccatcaatttgtgtaattaattccatacttcaaaagccttttgtaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63976" stop="68145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64275" g_stop="64337" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="155" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="284" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="285" r_stop="389" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67845" g_length="420"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="809" r_length="420" r_score="0.990"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E719368" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>808</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E719368" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64275" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTG-TTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAAATT</genome_strand>
        <mrna_strand>GAACCCAATTTCATCCACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCCGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCGGGAGTTGGACCCAAAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTANGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACCATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E722730" ref_strand="+" ref_description="SGN-E722730 [FC18AE11]">
      <seq>gcggccaatcggccgaattgaacccaatttcatctactagtttcgcgtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgttttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttgactgtttctgttggtttgacgatcaatttgtgtaattaattccatacttcaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63974" stop="68131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64279" g_stop="64337" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="82" r_length="59" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="174" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="303" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="304" r_stop="408" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67831" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="814" r_length="406" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E722730" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>790</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E722730" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64279" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTG-TTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAA</genome_strand>
        <mrna_strand>CCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E579874" ref_strand="+" ref_description="SGN-E579874 [87007]">
      <seq>atctactagtttcgtgtaaagattcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaagatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcactatccattttcctccggattatccattcaaacctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagtaatgggagtatatgcttggacatactgaaggagcagtggagccctgccttaactatttccaaggttttgctttcaatttgctcgcttttgacggacccaaaccccgatgatccattggttcctgagattgctcacatgttccagacagacaagtctaaatacgaaggaactgccaggagttggacccagaaagtattgccatgggttaaaacatttaaccttgtgatgggttgaattgattattaacaaaacaaatttcaaatgtttggttttctctaatctccattaccatgtgtagaatagcataggcgttgctcttctacaggaagaacgaatgatgctttgaatttcttcatgtatgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63987" stop="68024"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64287" g_stop="64337" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="51" r_length="51" r_score="0.961"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="52" r_stop="143" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="144" r_stop="271" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="272" r_stop="376" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67724" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="377" r_stop="676" r_length="300" r_score="0.876"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E579874" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E579874" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64287" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67724"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAG-AAGTA-TGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGA-TATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACG-ATAATGCTTTGAATTTGTTTATGTATGAA</genome_strand>
        <mrna_strand>ATCTACTAGTTTCGTGTAAAGATTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAAGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACTATCCATTTTCCTCCGGATTATCCATTCAAACCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGTAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCCTTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCGCTTTTGACGGACCCAAACCCCGATGATCCATTGGTTCCTGAGATTGCTCACATGTTCCAGACAGACAAGTCTAAATACGAAGGAACTGCCAGGAGTTGGACCCAGAAAGTATTGCCATGGGTTAAAACATTTAACCTTGTGATGGGTTGAATTGATTATTAAC-AAAACAAATTTCAAATGTTTGGTTTTCTCTAATCTCCATT-ACCATGTGTAGAATAGCA-TAGGCGTTGCTCTTCTACAGGAAGAACGAATGATGCTTTGAATTTCTTCATGTATGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E273937" ref_strand="+" ref_description="SGN-E273937 [cLEN-7-N23]">
      <seq>tactagtttcgcgtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcattcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63990" stop="67824"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64290" g_stop="64337" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="140" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="268" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="269" r_stop="373" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67524" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="374" r_stop="472" r_length="99" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E273937" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>472</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E273937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64290" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67524"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATAC</genome_strand>
        <mrna_strand>TACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATTCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733844" ref_strand="+" ref_description="SGN-E733844 [LB11AD07]">
      <seq>ctattttcgcgtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttgactgtttctgttggtttgacgatcaatttgtgtaattaattccatacttcaaaagccttttgtaaattctaccgtgtttattaatacggataactatagttcaacctggaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63992" stop="68191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64292" g_stop="64337" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="46" r_length="46" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="47" r_stop="138" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="266" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="371" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67886" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="372" r_stop="832" r_length="461" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E733844" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>832</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64292" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAAATTCTACCGTGTTTATTAATACGGATAACTATAGTTCAACCTGG</genome_strand>
        <mrna_strand>CTATTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAAATTCTACCGTGTTTATTAATACGGATAACTATAGTTCAACCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345306" ref_strand="+" ref_description="SGN-E345306 [cTOF-13-H24]">
      <seq>tagtttcgcgtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttgactgttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63993" stop="68083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64293" g_stop="64337" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="137" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="265" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="370" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67780" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="725" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E345306" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>725</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345306" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64293" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACT</genome_strand>
        <mrna_strand>TAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E246507" ref_strand="+" ref_description="SGN-E246507 [cLEF-45-I3]">
      <seq>tagtttcgcgtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63993" stop="67966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64293" g_stop="64337" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="137" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="265" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="370" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67666" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="611" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E246507" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>611</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E246507" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64293" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCA</genome_strand>
        <mrna_strand>TAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E245556" ref_strand="+" ref_description="SGN-E245556 [cLEF-43-P4]">
      <seq>tagtttcgcgtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63993" stop="67887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64293" g_stop="64337" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="137" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="138" r_stop="265" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="266" r_stop="370" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67587" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="371" r_stop="532" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E245556" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>532</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245556" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64293" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGAT</genome_strand>
        <mrna_strand>TAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E358277" ref_strand="+" ref_description="SGN-E358277 [cLHT-28-D13]">
      <seq>tttcgcgtaaagagtttgcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggcaacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgccttaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgatgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaatcctatgatggcttgaattgttataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttggttatgtatgaatgctaatatttgaactttgaacaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63996" stop="68047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64296" g_stop="64337" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.952"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.95"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="134" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="262" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="367" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67746" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="368" r_stop="688" r_length="321" r_score="0.981"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="689" polyA_stop="700"/>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E358277" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>688</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E358277" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64296" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAAC</genome_strand>
        <mrna_strand>TTTCGCGTAAAGAGTTTGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCAACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCCTTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGATGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAATCCTATGATGGCTTGAATTGTTATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGGTTATGTATGAATGCTAATATTTGAACTTTGAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283695" ref_strand="+" ref_description="SGN-E283695 [cLES-1-A21]">
      <seq>gttcgcgtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggacacgacccattttcctacggattatccattcaagcctgctaaggttgcttttaagacaaaagttttccatccaaatatcaatagcattgggagtatatgctcggacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63997" stop="67208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64296" g_stop="64337" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="134" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="135" r_stop="262" r_length="128" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="0.92"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66908" g_length="65"/>
          <reference_exon_boundary r_type="cDNA" r_start="263" r_stop="327" r_length="65" r_score="0.954"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E283695" ref_strand="+">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>327</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283695" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64296" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66908"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACAT</genome_strand>
        <mrna_strand>GTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGACACGACCCATTTTCCTACGGATTATCCATTCAAGCCTGCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAAGACAAAAGTTTTCCATCCAAATATCAATAGCATTGGGAGTATATGCTCGGACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E257244" ref_strand="+" ref_description="SGN-E257244 [cLEG-46-C19]">
      <seq>ttcgcgtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaaacgatatgctttgaaaattgttatgtatgaatactaatatttgaacttttgacatgtgtgggaagcgtatgtatctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63997" stop="68071"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64297" g_stop="64337" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="133" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="261" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="366" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67771" g_length="346"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="712" r_length="346" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E257244" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64297" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67771"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAG-AACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGC</genome_strand>
        <mrna_strand>TTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAAACGAT-ATGCTTTGAAAATTGTTATGTATGAATACTAATATTTGAACTTTTGACATGTGTGGGAAGCGTATGTATCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E257681" ref_strand="+" ref_description="SGN-E257681 [cLEG-39-C16]">
      <seq>ttcgcgtaaagagtcagcagcttttccgattttctgatcagattcagatttggttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63997" stop="67823"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64297" g_stop="64337" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="133" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="261" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="366" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67523" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="464" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E257681" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>464</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257681" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64297" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67523"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATA</genome_strand>
        <mrna_strand>TTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGGTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272102" ref_strand="+" ref_description="SGN-E272102 [cLEN-4-G15]">
      <seq>ttcgcgtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgacccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63997" stop="67776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64297" g_stop="64337" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="133" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="261" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="366" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67476" g_length="51"/>
          <reference_exon_boundary r_type="cDNA" r_start="367" r_stop="417" r_length="51" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E272102" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E272102" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64297" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67476"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCC</genome_strand>
        <mrna_strand>TTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275338" ref_strand="+" ref_description="SGN-E275338 [cLEN-10-E1]">
      <seq>ttcgcgtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcaccatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaacgttgtccatccaaatatcaatagcaatgggtagtatatgcttggacatactgaagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63997" stop="67217"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64297" g_stop="64337" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="133" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="261" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="0.98"/>
            <acceptor a_prob="0.997" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66917" g_length="74"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="336" r_length="75" r_score="0.946"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E275338" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64297" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66917"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGG-AGTATATGCTTGGACATACTGAAGGA</genome_strand>
        <mrna_strand>TTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACCATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAACGTTGTCCATCCAAATATCAATAGCAATGGGTAGTATATGCTTGGACATACTGAAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270604" ref_strand="+" ref_description="SGN-E270604 [cLEN-1-O11]">
      <seq>ttcgcgtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="63997" stop="65971"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64297" g_stop="64337" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="133" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65671" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="134" r_stop="220" r_length="87" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E270604" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>220</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270604" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64297" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65671"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCA</genome_strand>
        <mrna_strand>TTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368158" ref_strand="+" ref_description="SGN-E368158 [TUS-22-I8]">
      <seq>gtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgttattgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatcttctttttgactgtttctgttggtttgaccatcaatttgggtatttaatttcctacttcaaaacccttttgtaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64002" stop="68143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64302" g_stop="64337" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="128" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="256" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="361" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67842" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="778" r_length="417" r_score="0.978"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="779" polyA_stop="790"/>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E368158" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368158" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64302" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAA</genome_strand>
        <mrna_strand>GTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTATTGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTTCTTTTTGACTGTTTCTGTTGGTTTGACCATCAATTTGGGTATTTAATTTCCTACTTCAAAACCCTTTTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369410" ref_strand="+" ref_description="SGN-E369410 [TUS-23-G21]">
      <seq>gtaaagtgtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttgactgtttctgttggtttgacgatcaatttggtaattaatttcatacttcaaaagccttttgtaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64002" stop="68143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64302" g_stop="64337" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.972"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="128" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="256" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="361" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67842" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="777" r_length="416" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="778" polyA_stop="787"/>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E369410" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>778</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369410" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64302" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAA</genome_strand>
        <mrna_strand>GTAAAGTGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTG-GTAATTAATTTCATACTTCAAAAGCCTTTTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377884" ref_strand="+" ref_description="SGN-E377884 [TUS-20-D6]">
      <seq>gtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttgactgtttctgttggtttgacgatcaatttgtgtaattaattccataccttcaaaagcctttttgtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64002" stop="68143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64302" g_stop="64337" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="128" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="256" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="361" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67838" g_length="413"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="775" r_length="414" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="779" polyA_stop="793"/>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E377884" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>774</cumulative_length_of_scored_exons>
        <coverage percentage="0.976" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377884" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64302" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67838"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATA-CTTCAAAAGCCTTTT</genome_strand>
        <mrna_strand>GTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACCTTCAAAAGCCTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E235759" ref_strand="+" ref_description="SGN-E235759 [cLED-15-E19]">
      <seq>gtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64002" stop="67945"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64302" g_stop="64337" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="128" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="256" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="361" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67645" g_length="220"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="581" r_length="220" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E235759" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>581</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E235759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64302" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67645"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCA</genome_strand>
        <mrna_strand>GTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E233104" ref_strand="+" ref_description="SGN-E233104 [cLED-6-H4]">
      <seq>gtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64002" stop="67887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64302" g_stop="64337" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="128" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="256" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="361" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67587" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="523" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E233104" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E233104" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64302" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGAT</genome_strand>
        <mrna_strand>GTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256321" ref_strand="+" ref_description="SGN-E256321 [cLEG-37-O23]">
      <seq>gtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64002" stop="67887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64302" g_stop="64337" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="128" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="256" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="361" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67587" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="523" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E256321" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256321" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64302" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGAT</genome_strand>
        <mrna_strand>GTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E240516" ref_strand="+" ref_description="SGN-E240516 [cLED-21-P22]">
      <seq>gtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64002" stop="67800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64302" g_stop="64337" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="128" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="256" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="361" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67500" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="436" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E240516" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>436</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E240516" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64302" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATG</genome_strand>
        <mrna_strand>GTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E291560" ref_strand="+" ref_description="SGN-E291560 [cLET-6-I4]">
      <seq>gtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgacccct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64002" stop="67777"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64302" g_stop="64337" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="128" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="256" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="361" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67477" g_length="52"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="413" r_length="52" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E291560" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>413</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E291560" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64302" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67477"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCT</genome_strand>
        <mrna_strand>GTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237729" ref_strand="+" ref_description="SGN-E237729 [cLED-19-F2]">
      <seq>gtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64002" stop="67754"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64302" g_stop="64337" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="128" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="256" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="361" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67454" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="362" r_stop="390" r_length="29" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E237729" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>390</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237729" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64302" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67454"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGAC</genome_strand>
        <mrna_strand>GTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243522" ref_strand="+" ref_description="SGN-E243522 [cLED-34-L2]">
      <seq>gtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttccaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtctctttggtcacgatccatttttctccgcattatccattcaagcctcctaaggttgcttttaggacataagttttccatccaaatatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64002" stop="67179"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64302" g_stop="64337" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="128" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="256" r_length="128" r_score="0.969"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66879" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="257" r_stop="292" r_length="36" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E243522" ref_strand="+">
        <total_alignment_score>0.977</total_alignment_score>
        <cumulative_length_of_scored_exons>292</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E243522" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64302" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66879"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATC</genome_strand>
        <mrna_strand>GTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCCAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTCTCTTTGGTCACGATCCATTTTTCTCCGCATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACATAAGTTTTCCATCCAAATATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E239989" ref_strand="+" ref_description="SGN-E239989 [cLED-29-B10]">
      <seq>gtaaagagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64002" stop="66002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64302" g_stop="64337" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="128" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65702" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="246" r_length="118" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E239989" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>246</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E239989" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64302" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAA</genome_strand>
        <mrna_strand>GTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E304885" ref_strand="+" ref_description="SGN-E304885 [cLEX-10-C22]">
      <seq>taaagagtcaccatcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64003" stop="67887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64303" g_stop="64337" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.943"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="127" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="128" r_stop="255" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="256" r_stop="360" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67587" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="361" r_stop="522" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E304885" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>522</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E304885" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64303" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGAT</genome_strand>
        <mrna_strand>TAAAGAGTCACCATCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E259224" ref_strand="+" ref_description="SGN-E259224 [cLEG-43-H1]">
      <seq>aaagagtcagcagcttttccgattttctgatcattttcagatttgtttggattttgggggcttcgggacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaaacgataatgcttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64004" stop="68069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64304" g_stop="64337" g_length="34"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="34" r_length="34" r_score="0.971"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="35" r_stop="126" r_length="92" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="127" r_stop="254" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="255" r_stop="359" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67769" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="360" r_stop="703" r_length="344" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E259224" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E259224" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64304" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAG-AACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCT</genome_strand>
        <mrna_strand>AAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAT...............................................................................................TTTCAGATTTGTTTGGATTTTGGGGGCTTCGGGACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAAACGATAATGC-TTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262855" ref_strand="+" ref_description="SGN-E262855 [cLEG-59-A14]">
      <seq>gagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttgaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64007" stop="68078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64307" g_stop="64337" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="123" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="251" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="356" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67781" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="712" r_length="356" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E262855" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E262855" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64307" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67781"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTG</genome_strand>
        <mrna_strand>GAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E263528" ref_strand="+" ref_description="SGN-E263528 [cLEG-60-A14]">
      <seq>gagtcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttgaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64007" stop="68078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64307" g_stop="64337" g_length="31"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="31" r_length="31" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="32" r_stop="123" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="124" r_stop="251" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="252" r_stop="356" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67778" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="357" r_stop="709" r_length="353" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E263528" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E263528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64307" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGA</genome_strand>
        <mrna_strand>GAGTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733179" ref_strand="+" ref_description="SGN-E733179 [LB04AG04]">
      <seq>cgttagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64009" stop="68051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64308" g_stop="64337" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="30" r_length="30" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="31" r_stop="122" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="250" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="251" r_stop="355" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67750" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="356" r_stop="680" r_length="325" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="682" polyA_stop="694"/>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E733179" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>680</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733179" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64308" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGT</genome_strand>
        <mrna_strand>CGTTAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E714983" ref_strand="+" ref_description="SGN-E714983 [FB13AA06]">
      <seq>gtctgcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64009" stop="68047"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64309" g_stop="64337" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="121" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="249" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="250" r_stop="354" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67746" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="355" r_stop="675" r_length="321" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="676" polyA_stop="686"/>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E714983" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>675</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E714983" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64309" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67746"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAAC</genome_strand>
        <mrna_strand>GTCTGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E603938" ref_strand="+" ref_description="SGN-E603938 [67128]">
      <seq>ttcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaagatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgttttttggtcactatccattttcctccggattatccattcaaacctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagtaatgggagtatatgcttggacatactgaaggagcagtggagccctgccttaactatttccaaggttttgctttcaatttgctcgcttttgacggacccaaaccccgatgatccattggttcctgagattgctcacatgtacaagacagacaagtctaaatacgaaggaactgccaggagttgggaccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64010" stop="67849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64309" g_stop="64337" g_length="29"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="29" r_length="29" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="30" r_stop="121" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="248" r_length="127" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="353" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67549" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="478" r_length="125" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E603938" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E603938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64309" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67549"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTT-GGACCC</genome_strand>
        <mrna_strand>TTCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAAGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTG-TTTTTTGGTCACTATCCATTTTCCTCCGGATTATCCATTCAAACCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGTAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCCTTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCGCTTTTGACGGACCCAAACCCCGATGATCCATTGGTTCCTGAGATTGCTCACATGTACAAGACAGACAAGTCTAAATACGAAGGAACTGCCAGGAGTTGGGACCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258446" ref_strand="+" ref_description="SGN-E258446 [cLEG-47-H9]">
      <seq>tcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtggggaacgtatgtatctgctttttgactggttctggtggtttgacgatcaatttgtgtaattaattccatacttcaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64010" stop="68131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64310" g_stop="64337" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="120" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="248" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="353" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67834" g_length="409"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="762" r_length="409" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E258446" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>762</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64310" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCC</genome_strand>
        <mrna_strand>TCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGGAACGTATGTATCTGCTTTTTGACTGGTTCTGGTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E299039" ref_strand="+" ref_description="SGN-E299039 [cLET-42-L10]">
      <seq>tcagcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatctcaaatgttatatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64010" stop="67996"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64310" g_stop="64337" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="120" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="121" r_stop="248" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="249" r_stop="353" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67696" g_length="271"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="624" r_length="271" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E299039" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>624</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E299039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64310" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67696"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGA</genome_strand>
        <mrna_strand>TCAGCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATCTCAAATGTTATATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E207832" ref_strand="+" ref_description="SGN-E207832 [cLEC-32-H22]">
      <seq>gcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcggtgcttctctacaggaagaacgataatgctttgaatttggttatgtatgaaatactaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64013" stop="68030"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64313" g_stop="64337" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="117" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="245" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="350" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67730" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="656" r_length="306" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E207832" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207832" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64313" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67730"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATG-AATACTAA</genome_strand>
        <mrna_strand>GCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGGTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGGTTATGTATGAAATACTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E205987" ref_strand="+" ref_description="SGN-E205987 [cLEC-20-K8]">
      <seq>gcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64013" stop="67966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64313" g_stop="64337" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="117" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="245" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="350" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67666" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="591" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E205987" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E205987" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64313" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCA</genome_strand>
        <mrna_strand>GCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E214022" ref_strand="+" ref_description="SGN-E214022 [cLEC-80-N6]">
      <seq>gcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttngactgatataaacaaaaacaaatttcaaatggtttatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64013" stop="67931"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64313" g_stop="64337" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="117" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="245" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="350" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67631" g_length="206"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="556" r_length="206" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E214022" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E214022" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64313" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67631"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATC</genome_strand>
        <mrna_strand>GCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTNGACTGATATAAACAAAAACAAATTTCAAATGGTTTATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209170" ref_strand="+" ref_description="SGN-E209170 [cLEC-38-J19]">
      <seq>gcagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64013" stop="67817"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64313" g_stop="64337" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="117" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="245" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="350" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67517" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="442" r_length="92" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E209170" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>442</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209170" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64313" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67517"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTC</genome_strand>
        <mrna_strand>GCAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E698752" ref_strand="+" ref_description="SGN-E698752 [FA07BH12]">
      <seq>ccgtattttccgattttctgatcagattcagatttgtttggcttttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggtcctttcttacctttatctgctgagcaataatacaagctatgaaaacatacctattccgaggcttgggaccttcatgatataagtgccttttcaaatagattttgattcattagctaattgtgtataatctgtaggatagctaatgaaaatttatcgactctttaaaagggaagatcgtttaattgggcatcatagataataggtgacctaatattattccttaatagctttagggagcaatgatgaaaacattttaaccgtctaatgtgtccttcataaagcactttgattttggttgcataggataagatattgtccccgattctctgctagtagcatcatttgtttttttttctgaaattatgagttctgttaaatggctttccaagaccaattaaaactggtttgtgtttcgcgaagcatgttgtgttatttatgtttcttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64018" stop="67695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64313" g_stop="64337" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.840"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="117" r_length="92" r_score="0.989"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="245" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="67395" g_length="552"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="798" r_length="553" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E698752" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>797</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E698752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64313" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="67395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTG-TTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAA</genome_strand>
        <mrna_strand>CCGTATTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGCTTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAATTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E721124" ref_strand="+" ref_description="SGN-E721124 [FC12DD07]">
      <seq>gagcttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttgaanannaanaanaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64015" stop="68078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64314" g_stop="64337" g_length="24"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="24" r_length="24" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="116" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="117" r_stop="244" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="349" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67780" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="350" r_stop="704" r_length="355" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="714" polyA_stop="743"/>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E721124" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.948" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E721124" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64314" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACT</genome_strand>
        <mrna_strand>GAGCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGAAN</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E255912" ref_strand="+" ref_description="SGN-E255912 [cLEG-35-J22]">
      <seq>gcttttccgattttctgatcagattcagatttgttaggattttgatgggtgcgaaacgaatattgaaggagctgaaggatctccagaaagatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64016" stop="67997"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64316" g_stop="64337" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="114" r_length="92" r_score="0.957"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="242" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="243" r_stop="347" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67697" g_length="272"/>
          <reference_exon_boundary r_type="cDNA" r_start="348" r_stop="619" r_length="272" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E255912" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>619</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E255912" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64316" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67697"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGAT</genome_strand>
        <mrna_strand>GCTTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTAGGATTTTGATGGGTGCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAAGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249692" ref_strand="+" ref_description="SGN-E249692 [cLEF-56-B12]">
      <seq>ttttccgattttctgatcagattcagatttgtttggatttggatggcttggaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatcctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64018" stop="68069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64318" g_stop="64337" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="112" r_length="92" r_score="0.978"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="240" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="345" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67769" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="689" r_length="344" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E249692" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>689</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249692" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64318" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCT</genome_strand>
        <mrna_strand>TTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTGGATGGCTTGGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATCCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E313583" ref_strand="+" ref_description="SGN-E313583 [cTOA-12-J10]">
      <seq>ttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64018" stop="68018"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64318" g_stop="64337" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="112" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="240" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="345" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67718" g_length="293"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="638" r_length="293" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E313583" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E313583" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64318" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67718"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATG</genome_strand>
        <mrna_strand>TTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302709" ref_strand="+" ref_description="SGN-E302709 [cLEY-1-O13]">
      <seq>ttttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64018" stop="67887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64318" g_stop="64337" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="112" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="113" r_stop="240" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="241" r_stop="345" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67587" g_length="162"/>
          <reference_exon_boundary r_type="cDNA" r_start="346" r_stop="507" r_length="162" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E302709" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302709" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64318" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67587"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGAT</genome_strand>
        <mrna_strand>TTTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E293162" ref_strand="+" ref_description="SGN-E293162 [cLET-12-D14]">
      <seq>tttccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64019" stop="67211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64319" g_stop="64337" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="111" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="112" r_stop="239" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66911" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="307" r_length="68" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E293162" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>307</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E293162" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64319" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66911"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACT</genome_strand>
        <mrna_strand>TTTCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256866" ref_strand="+" ref_description="SGN-E256866 [cLEG-40-B10]">
      <seq>tccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaattttgttatgtatgaatactaatatttgaacttttaacatgtgtggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64124" stop="68055"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64321" g_stop="64337" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="109" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="237" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="238" r_stop="342" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67755" g_length="330"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="672" r_length="330" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E256866" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>672</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256866" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64321" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67755"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGG</genome_strand>
        <mrna_strand>TCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTTGTTATGTATGAATACTAATATTTGAACTTTTAACATGTGTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E252557" ref_strand="+" ref_description="SGN-E252557 [cLEG-20-P22]">
      <seq>tccgattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggcccttatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64124" stop="67950"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64321" g_stop="64337" g_length="17"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="17" r_length="17" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="109" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="110" r_stop="235" r_length="126" r_score="0.984"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="236" r_stop="340" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67650" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="341" r_stop="565" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E252557" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>567</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E252557" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64321" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67650"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCGATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAAC</genome_strand>
        <mrna_strand>TCCGATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCT-T-ATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348647" ref_strand="+" ref_description="SGN-E348647 [cTOF-30-B23]">
      <seq>gattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccataacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaaagcgtatgtatctgcttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64124" stop="68076"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64324" g_stop="64337" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="106" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="234" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="339" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67776" g_length="351"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="690" r_length="351" r_score="0.991"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E348647" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>690</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348647" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64324" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67776"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGG-AAGCGTATGTATCTGCTTTTT</genome_strand>
        <mrna_strand>GATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCA-TAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAAGCGTATGTATCTGCTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E274084" ref_strand="+" ref_description="SGN-E274084 [cLEN-8-L12]">
      <seq>gattttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64124" stop="67800"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64324" g_stop="64337" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="106" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="234" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="235" r_stop="339" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67500" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="340" r_stop="414" r_length="75" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E274084" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>414</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E274084" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64324" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67500"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATG</genome_strand>
        <mrna_strand>GATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E298111" ref_strand="+" ref_description="SGN-E298111 [cLEW-12-M10]">
      <seq>attttctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagnggagccctgcattaactatttccaaggttgtgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64124" stop="67798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64325" g_stop="64337" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="13" r_length="13" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="105" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="233" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="338" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67498" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="339" r_stop="411" r_length="73" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E298111" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>411</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E298111" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64325" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67498"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACA</genome_strand>
        <mrna_strand>ATTTTCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGNGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287362" ref_strand="+" ref_description="SGN-E287362 [cLES-15-M17]">
      <seq>tctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggatttgctttcaatttgctcacttttgacggacccaaaccctgatgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64123" stop="67886"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64329" g_stop="64337" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="101" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="229" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="334" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67586" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="335" r_stop="495" r_length="161" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E287362" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>495</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287362" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64329" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67586"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGA</genome_strand>
        <mrna_strand>TCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGATGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E362456" ref_strand="+" ref_description="SGN-E362456 [cLPP-1-M20]">
      <seq>tctgatcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgccttaactatttccaaggtcctttcttacctttatctgctgagcaataatacaagctatgaaaacatacctattccgaggcttgggaccttcatgatataagtgccttttcaaatagattttgattcattagctaattgtgtataatctgtaggatagctaatgaaattttatcgactctttaaaagggaaagatcatttaattgggca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64123" stop="67439"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64329" g_stop="64337" g_length="9"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="9" r_length="9" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="101" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="229" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="67139" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="230" r_stop="526" r_length="297" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E362456" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E362456" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64329" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="67139"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTGATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGG-AAGATCGTTTAATTGGGCA</genome_strand>
        <mrna_strand>TCTGATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCCTTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAATTTTATCGACTCTTTAAAAGGGAAAGATCATTTAATTGGGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E257633" ref_strand="-" ref_description="SGN-E257633 [cLEG-45-L20]">
      <seq>gatcagattcagatttgtttggattttgatgctttcgaaacgaatattgaaggagctgaacgatctccagaaaggatcctcctatttcatgcagcgctggccctgttggagaggtcatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttgactgttaaaaaaaaaaaaaaaaaaactc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64127" stop="68083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64332" g_stop="64337" g_length="6"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="6" r_length="6" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="7" r_stop="99" r_length="93" r_score="0.935"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="0.92"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="227" r_length="128" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="228" r_stop="332" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67780" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="333" r_stop="687" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="691" polyA_stop="710"/>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E257633" ref_strand="-">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>686</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257633" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="64332" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAG-AAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACT</genome_strand>
        <mrna_strand>GATCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGCTTTCGAAACGAATATTGAAGGAGCTGAACGATCTCCAGAAAGGATCCTCCTATTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGTCATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E275016" ref_strand="+" ref_description="SGN-E275016 [cLEN-16-N11]">
      <seq>tcagattcagatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtgtcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctgcggattatccattcaagccttctaagggggcttttaggacaaaagatttccatccaaatatcaatagcaatgggagtatatgctgggacatactgaacgaacagtggagccctgcattaactatttccaaggatttgcttccaattcgctcactttggacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64131" stop="67813"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64334" g_stop="64337" g_length="4"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="4" r_length="4" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="64433" g_stop="64524" g_length="92"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="96" r_length="92" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="224" r_length="128" r_score="0.977"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="329" r_length="105" r_score="0.943"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="0.94"/>
            <acceptor a_prob="0.975" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="67426" g_stop="67513" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="330" r_stop="417" r_length="88" r_score="0.955"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E275016" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E275016" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64334" e_stop="64337"/>
          <exon e_start="64433" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67513"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGGTAAATTCATGACTTTTATCTATGTATATTTTCCAGAATTTCTTGTTGTTTTGTGTTGAATTTTGATCTAGTTTTTGTTTTTTTGGTGTGATTAGATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACA</genome_strand>
        <mrna_strand>TCAG...............................................................................................ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTGTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTGCGGATTATCCATTCAAGCCTTCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGCTTTTAGGACAAAAGATTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTGGGACATACTGAACGAACAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGCTTCCAATTCGCTCACTTTGGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E257092" ref_strand="+" ref_description="SGN-E257092 [cLEG-44-P5]">
      <seq>agatttgtttggattttgatggcttctaaacgaatattgaaggagctgaaggatctccagaaggatcctcctactttatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64137" stop="68052"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64437" g_stop="64524" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="216" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="321" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67426" g_stop="67752" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="648" r_length="327" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E257092" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E257092" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64437" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67752"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGT</genome_strand>
        <mrna_strand>AGATTTGTTTGGATTTTGATGGCTTCTAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTTATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E251528" ref_strand="+" ref_description="SGN-E251528 [cLEG-9-M3]">
      <seq>agatttgtttggattttgatggcttcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgccagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctcta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64137" stop="67984"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64437" g_stop="64524" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="89" r_length="89" r_score="0.977"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="90" r_stop="217" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="218" r_stop="322" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67426" g_stop="67684" g_length="259"/>
          <reference_exon_boundary r_type="cDNA" r_start="323" r_stop="581" r_length="259" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E251528" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E251528" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64437" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67684"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATG-CAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTA</genome_strand>
        <mrna_strand>AGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E253842" ref_strand="+" ref_description="SGN-E253842 [cLEG-28-L13]">
      <seq>agatttgtttggatttttttggcttctaaacgaatattgaaggacctgagagatctccagaaggatcctgggacttcatgcaacgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggctttgaactgatattaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64137" stop="67956"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64437" g_stop="64524" g_length="88"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="88" r_length="88" r_score="0.886"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="0.86"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="89" r_stop="216" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="321" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67426" g_stop="67656" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="322" r_stop="553" r_length="232" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E253842" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>552</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253842" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64437" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67656"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGC-TTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTG</genome_strand>
        <mrna_strand>AGATTTGTTTGGATTTTTTTGGCTTCTAAACGAATATTGAAGGACCTGAGAGATCTCCAGAAGGATCCTGGGACTTCATGCAACGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTTGAACTGATATTAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369409" ref_strand="+" ref_description="SGN-E369409 [TUS-23-G21](-)">
      <seq>gtttggattttaagggctcaaaacgaaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttgactgtttctgttggtttgacgatcaatttgtgtaattaattccatacttcaaaagccttttgtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64143" stop="68143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64443" g_stop="64524" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.927"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="210" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="211" r_stop="315" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67426" g_stop="67842" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="732" r_length="417" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="733" polyA_stop="743"/>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E369409" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369409" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64443" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGATTTTGATGGCTTCGAAACG-AATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAA</genome_strand>
        <mrna_strand>GTTTGGATTTTAAGGGC-TCAAAACGAAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E377883" ref_strand="+" ref_description="SGN-E377883 [TUS-20-D6](-)">
      <seq>tcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttgactgtttctgttggtttgacgatcaatttgtgtaattaattccatacttcaaaagccttttgtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64161" stop="68143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64461" g_stop="64524" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="192" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="297" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67426" g_stop="67842" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="714" r_length="417" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="715" polyA_stop="725"/>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E377883" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>714</cumulative_length_of_scored_exons>
        <coverage percentage="0.985" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E377883" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64461" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAA</genome_strand>
        <mrna_strand>TCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E276577" ref_strand="+" ref_description="SGN-E276577 [cLEN-17-J13]">
      <seq>tcgaaacgaatattgaaggagctgaaggatctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64161" stop="67966"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64461" g_stop="64524" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="192" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="193" r_stop="297" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67426" g_stop="67666" g_length="241"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="538" r_length="241" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E276577" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>538</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276577" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64461" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67666"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCA</genome_strand>
        <mrna_strand>TCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E349468" ref_strand="+" ref_description="SGN-E349468 [cTOS-1-A3]">
      <seq>atctccagaaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttgactgtttctgttggtttgacgatcaatttgtgtaattaatccatacttcaaaagccttttgtaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64189" stop="68143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64489" g_stop="64524" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="164" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="269" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67426" g_stop="67847" g_length="422"/>
          <reference_exon_boundary r_type="cDNA" r_start="270" r_stop="690" r_length="421" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E349468" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>691</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E349468" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64489" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAAATTCT</genome_strand>
        <mrna_strand>ATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAA-TCCATACTTCAAAAGCCTTTTGTAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E253037" ref_strand="+" ref_description="SGN-E253037 [cLEG-25-C1]">
      <seq>aaggatcctcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttgactgtttctgttggtttgacgatcaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64197" stop="68104"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64497" g_stop="64524" g_length="28"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="28" r_length="28" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="156" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="157" r_stop="261" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67426" g_stop="67804" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="262" r_stop="640" r_length="379" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E253037" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>640</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64497" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67804"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAAT</genome_strand>
        <mrna_strand>AAGGATCCTCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368367" ref_strand="+" ref_description="SGN-E368367 [TUS-23-H21](-)">
      <seq>aggatcctcctacttcacgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctcttatagcccttattctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattatctatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctaagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccacaagtatgccatgggttaaaaaatttaaccctatcatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaacttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatttgctttttgactgtttctgttggtttgacgatcaatttgtgtaattaattccatacttcaaaagccttttgtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64198" stop="68143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64498" g_stop="64524" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="27" r_length="27" r_score="0.963"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="155" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="156" r_stop="260" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67426" g_stop="67842" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="261" r_stop="677" r_length="417" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="678" polyA_stop="688"/>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E368367" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368367" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64498" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGATCCTCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAA</genome_strand>
        <mrna_strand>AGGATCCTCCTACTTCACGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTTATAGCCCTTATTCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTATCTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTAAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCACAAGTATGCCATGGGTTAAAAAATTTAACCCTATCATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAACTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATTTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E253066" ref_strand="+" ref_description="SGN-E253066 [cLEG-25-G14]">
      <seq>tcctacttcatgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatatcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatatgaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="64205" stop="68069"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="64505" g_stop="64524" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="148" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="149" r_stop="253" r_length="105" r_score="0.990"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="67426" g_stop="67769" g_length="344"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="597" r_length="344" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E253066" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E253066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="64505" e_stop="64524"/>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67769"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTACTTCATGCAGCGCTGGTGTCTAATCTTTCTTTCCTCTTGTTCTGATGTGTTTTTGACTTTTTTTTTAATGCTTTTGTGTAAAGTTTTGATTTTTACCTTGTTTGGTTATTGATCCATGGTTTAGAAACTCAAATGTCAATTTTTAATCTTAGTTGAGATGATTTTAGGGTTATGATTTTCTTGTATTGTAATGGTTCGTTCTGTAGTCAAAGATATATATATATATATATATATATATATATATATAGCTAGATTTGATGAGTGCTCAAATGTGTAGCTTGATTTGTTATTTGTGAGTAAAGTTCGTGTCGCCTTGAGCAGCTGGATTAATTCACATACAGAGTAACTCTGGTAACACATTTAACACATGGGTTTGCTATGTTTTGTTCATGTTAGCTCTTTGTCTAAAATGTTGATCTTTGACAATTATCACTTCATTCATTTCCCTCTATTCTGCATAGCACAAATGGCATTTGCATTGAAATTTGAATAGCCACTTAAGTCTTCTGTGATGCACAAAGTAGACGATTGAAACCTTGGAGCCTTAACCCTTTAAGTTTTAAGGGGTGAATTAGTAAAATTATCTTCTTATTTATGATCTTTTGATATGCGTGTAAAAAGGAAAGTGTTCAACTAATATGGGACAGGGGAGTAGTATTGTAGCTATGTTACCTTTTTAAAGATAGAGGGGCCATTGCATTATCCGTGAGTTTTGAAGGTTGCAGTGATTGGCCCTTAACAGTTTAGCTAGTCATCAAAAAAAGAAGTTGTAGCTATCTTACCTTTTAAAAAGAGGATCTCAAGCTTATTTTTTACAACAGGAGGATTATCTATAAACATGATAGTTCATGTGCATTTCTTTTAATTAGCTTCCGTGTATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCT</genome_strand>
        <mrna_strand>TCCTACTTCATGCAGCGCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATATCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATGAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E256550" ref_strand="+" ref_description="SGN-E256550 [cLEG-38-C12]">
      <seq>tataatatgattcatgcttgactgtcttcatacatgatatacatctggatttgacaattcttatttgaattattgtgagagggcattttcactattcttcatctagatgtcgcgcacatgttcctgcatctgtaaaagatgtacatgctatgttatctgttattctttgacattgacttcctaacaactttgtaacaggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggtcctttcttacctttatctgctgagcaataatacaagctatgaaaacatacctattccgaggcttgggaccttcatgatataagtgccttttcaaatagattttgattca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="65087" stop="67359"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65387" g_stop="65712" g_length="326"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="326" r_length="326" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66844" g_stop="67059" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="327" r_stop="542" r_length="216" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E256550" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>542</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E256550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65387" e_stop="65712"/>
          <exon e_start="66844" e_stop="67059"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCA</genome_strand>
        <mrna_strand>TATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E368157" ref_strand="+" ref_description="SGN-E368157 [TUS-22-I8](-)">
      <seq>gccctgttgaaaaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttgactgtttctgttggtttgacgatcaatttgtgtaattaattccatacttcaaaagccttttgtaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="65285" stop="68143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="128" r_length="128" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="129" r_stop="233" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67426" g_stop="67842" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="650" r_length="417" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="651" polyA_stop="661"/>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E368157" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E368157" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAA</genome_strand>
        <mrna_strand>GCCCTGTTGAAAAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E276597" ref_strand="-" ref_description="SGN-E276597 [cLEN-17-D20]">
      <seq>catgcagcgctggccctgttggagaggacatgtttcactggcaggctacaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttgactgaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="65282" stop="68081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65585" g_stop="65712" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="140" r_length="128" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="141" r_stop="245" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67426" g_stop="67780" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="600" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E276597" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="0.969" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E276597" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="65585" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACT</genome_strand>
        <mrna_strand>GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E302710" ref_strand="+" ref_description="SGN-E302710 [cLEY-1-O13](-)">
      <seq>acatgtttcactgcaggctaccaataatggggccctctgatagcccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttgactgttaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="65300" stop="68083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65600" g_stop="65712" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.973"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="218" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67426" g_stop="67780" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="219" r_stop="573" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E302710" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E302710" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65600" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATGTTTCACTGGCAGGCTA-CAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACT</genome_strand>
        <mrna_strand>ACATGTTTCACT-GCAGGCTACCAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E711719" ref_strand="+" ref_description="SGN-E711719 [FB02DB04]">
      <seq>ccattatagcccttatgntgggggtgtttttttggtcacgacccattatcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttgaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="65337" stop="68078"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65634" g_stop="65712" g_length="79"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="79" r_length="79" r_score="0.924"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="0.96"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="80" r_stop="184" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67426" g_stop="67778" g_length="353"/>
          <reference_exon_boundary r_type="cDNA" r_start="185" r_stop="537" r_length="353" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="538" polyA_stop="548"/>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E711719" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>537</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E711719" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65634" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67778"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGA</genome_strand>
        <mrna_strand>CCATTATAGCCCTTATGNTGGGGGTGTTTTTTTGGTCACGACCCATTATCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E405423" ref_strand="-" ref_description="SGN-E405423 [PPC-18-A14]">
      <seq>gatagcccttatgctgggggtgttttttgggtcactatccattttcctccggattatccattcaaacctcctaaggttgcctttaggacaaaagttttccatccaaatatcaatagtaatgggagtatatgcttggacatactgaaggagcagtggagccctgccttaactatttccaaggttttgctttcaatttgctcgcttttgacggacccaaaccccgatgacccattggttcctgagattgctcacatgtacaagacagacaagtctaaatacgaaggaactgccaggagttggacccagaagtatgccatgggttaaaacatttaaccttatgatggcttgaattgatataaacaaaaacaaatttcaaatgttttgttttctctattctccattaacaatgtgtagaatagcattaggcgttgctcctctacaggaagaacgatgatgctttgaatttctttatgtatgaatgctaatatttgaattttgaacatgtgtgggaagcgtatttatctggttttggattgttaaaaaaaaaaaaaaaaaaaaactcgagactagttctctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="65338" stop="68083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65638" g_stop="65712" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="75" r_length="75" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="0.94"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="180" r_length="105" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="0.98"/>
            <acceptor a_prob="0.975" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67426" g_stop="67780" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="535" r_length="355" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="539" polyA_stop="560"/>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E405423" ref_strand="-">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E405423" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="65638" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACT</genome_strand>
        <mrna_strand>GATAGCCCTTATGCTGGGGGTGTTTTTTGGGTCACTATCCATTTTCCTCCGGATTATCCATTCAAACCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGTAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCCTTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCGCTTTTGACGGACCCAAACCCCGATGACCCATTGGTTCCTGAGATTGCTCACATGTACAAGACAGACAAGTCTAAATACGAAGGAACTGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAACATTTAACCTTATGATGGCTTGAATTGATATAAACAAAAACAAATTTCAAATGTTTTGTTTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTCCTCTACAGGAAGAACGATGATGCTTTGAATTTCTTTATGTATGAATGCTAATATTTGAATTTTGAACATGTGTGGGAAGCGTATTTATCTGGTTTTGGATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E348075" ref_strand="-" ref_description="SGN-E348075 [cTOF-31-J17]">
      <seq>ccttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttgactgtttctgttggtttgacgatcaatttgtgtaattaattccatacttcaaaaaaaaaaaaaaaaaaaaaaaactcgagactagttctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="65344" stop="68131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65644" g_stop="65712" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="69" r_length="69" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="70" r_stop="174" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67426" g_stop="67831" g_length="406"/>
          <reference_exon_boundary r_type="cDNA" r_start="175" r_stop="580" r_length="406" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="581" polyA_stop="601"/>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E348075" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>580</cumulative_length_of_scored_exons>
        <coverage percentage="0.942" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E348075" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="65644" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAA</genome_strand>
        <mrna_strand>CCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283696" ref_strand="+" ref_description="SGN-E283696 [cLES-1-A21](-)">
      <seq>ttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgatgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaattgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttgcctgttaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="65346" stop="118890"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65646" g_stop="65712" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="172" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67426" g_stop="67781" g_length="356"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="528" r_length="356" r_score="0.992"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="67782" i_stop="68362" i_length="581">
            <donor d_prob="0.000" d_score="0.98"/>
            <acceptor a_prob="0.979" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="68363" g_stop="68375" g_length="13"/>
          <reference_exon_boundary r_type="cDNA" r_start="529" r_stop="541" r_length="13" r_score="0.615"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E283696" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65646" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67781"/>
          <exon e_start="68363" e_stop="68375"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAAATTCTACCGTGTTTATTAATACGGATAACTATAGTTCAACCTGGATATACTTGCTTCCCTCCATGTTTTGGAGTCTATTCAGTAATATGTCCGAGTTAGTTTGTGTGCATCTACAACCAAAGTTCCAGCAGAAATCACATAGCTTGTCTTCCTTGGAACTCGAACCTTATTACTTGGGTCCGATTCTTCTGCAACTTAACCATCTAGCATTGGAGGTTTATTCATTGACCGACTTTTCTCTCTTCTTTGTATCGTTCCAATTAATTCGGATCTCTCTGAAAAGACCATTGCTTACATGATTGAATGTGTAGGAGAATTAGTGTTGTTGATCCTTTGCTTGGATCGTGAGTGTTGAAAAGTGAGTGAAAATCATATTCTTTTATCTGATAAGTTGTCAAAGAATCCACTTTTTTCTTTTTTTACCAACGTGAGTCACATTTGGCAATGATTTACATTTTCTTTTTTTTTCTTGTTGCTAATTCTGCAATTACTATTTATTTTCTTTATTTATGTAATATAGTTAGTAGATAATA</genome_strand>
        <mrna_strand>TTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGATGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAATTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGCCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E287372" ref_strand="-" ref_description="SGN-E287372 [cLES-15-A24]">
      <seq>ttatgctgggggtgtttttttggtcacgatccattttcctccggattatccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgatgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatcccatgggttaaaaaatttaaccctatgatggcttgaattgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttgactgttaaaaaaaaaaaaaaaaaaaaaaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="65346" stop="68083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65646" g_stop="65712" g_length="67"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="67" r_length="67" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="68" r_stop="172" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67426" g_stop="67780" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="173" r_stop="527" r_length="355" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="531" polyA_stop="554"/>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E287372" ref_strand="-">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.950" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E287372" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="65646" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACT</genome_strand>
        <mrna_strand>TTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGATGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATCCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAATTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E220926" ref_strand="+" ref_description="SGN-E220926 [cLEL-22-C14](-)">
      <seq>atccattcaagcctcctaaggttgcttttaggacaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttgactgttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="65393" stop="68083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65693" g_stop="65712" g_length="20"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="20" r_length="20" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="21" r_stop="125" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67426" g_stop="67780" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="480" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="484" polyA_stop="501"/>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E220926" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>480</cumulative_length_of_scored_exons>
        <coverage percentage="0.958" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E220926" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65693" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCATTCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACT</genome_strand>
        <mrna_strand>ATCCATTCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282309" ref_strand="+" ref_description="SGN-E282309 [cLER-18-C3]">
      <seq>tcaagcctcctaaggttgcttttatgtcaaaagttttccatccaaatatcaatagcaatgggagtatatgcttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatntgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="65399" stop="68057"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="65699" g_stop="65712" g_length="14"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="14" r_length="14" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131">
            <donor d_prob="0.957" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="66844" g_stop="66948" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="15" r_stop="119" r_length="105" r_score="0.981"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="67426" g_stop="67757" g_length="332"/>
          <reference_exon_boundary r_type="cDNA" r_start="120" r_stop="451" r_length="332" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E282309" ref_strand="+">
        <total_alignment_score>0.993</total_alignment_score>
        <cumulative_length_of_scored_exons>451</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282309" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="65699" e_stop="65712"/>
          <exon e_start="66844" e_stop="66948"/>
          <exon e_start="67426" e_stop="67757"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGCCTCCTAAGGTATCTTACAATTGCAAATTACTTTGAGTTAATGATGTCACTGCTGGCGACTATTCTATTTGCAGATGCCTTCTTACTTGATTTTGCATATTGGAAGTTTGGAACCTAGTTTTCTTGCTTTTTTGACTTTATTTTGCTAGAGTGTTTTTAGTGATGTTCATATAGATCTCCTAGTAATGAGCTTGTAGTTGTGGTGCATACTTTTGAGTCATTGCGATCAAGAAGAGAAGTTGATTTTTGCTGTTAACTGATCGTGTGTCATTAGTGGAGCCTTCTCTGGCTTTATTTTCTATGCTTGTTTGTTAGACTGTCACCTTGCATGAGAAACACATTTTCAAGATTTTAGTCTAACGCACATATAAAAGCATGAGTATGTTTTTAGAATGGTACGTGTTATGCTACTTATATCAGCATGTGACACAATGCTTGTCTTTGTAACTTTTGGTCTAGATAAGGTGATTAAGGAGGAATTGAGATTTCATCTTCCAATTTTGTTTTTAATAGTGCCTTGGACTATGCATACTTTTACATCATTTATAGAAAGAATGAATGGGATTCTCTTTGGGGAGGGTTGAGAGTTCAGCTTCTTTAGAATCAAGTTGGTCAGTCTGGTTCAAATCACAGATTTCTTGCAAAAAAAAAATCCTCTATGAGACTTCAAATGTGCGGATTTGCTGATCCATGGTCAATATAACTAGGCTAGGTGGTCTACATGACTCATGTATGTTTTATACACACATACTGGTCAATGATGATTTTTTCCCAAATTACTGATTAACAGTTGATTAATATAAAAGATCACCATCTTTCGGCTAAGGTTGCATCAAGAAAAAATAAATAAAAAATACACACATACTGATACTCACACACAAGAAAGAAAAAGGAAAAGGAAATACATAGATCTATTTGGAGCAAGTGATTATTGAGGATTTAGATGGCTACCACACTAGTCTATATTGAGGCATGGTTGATAGGGAGGGCTATTTAGAAAATTTTCATGTCAAACTAATTGTTTCTCTTGTAAACCTTTAGTTGGTGAACCTGAACATGTAAATTCATGTGCATCAGCTTATAAACTGCAGTTTCCCTCTAGACTTTATTGTGTAACATTTATTCGTTAAATCCTTGCAGGTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAA</genome_strand>
        <mrna_strand>TCAAGCCTCCTAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCTTTTATGTCAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATNTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E225918" ref_strand="+" ref_description="SGN-E225918 [cLEL-31-C24](-)">
      <seq>aatggaagtatatgcttggacaactgaaaggagcagtgaagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="66586" stop="68010"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66886" g_stop="66948" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="0.92"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67426" g_stop="67711" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="349" r_length="286" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="350" polyA_stop="366"/>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E225918" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>349</cumulative_length_of_scored_exons>
        <coverage percentage="0.954" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E225918" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66886" e_stop="66948"/>
          <exon e_start="67426" e_stop="67711"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATGGGAGTATATGCTTGGACATACTG-AAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTT</genome_strand>
        <mrna_strand>AATGGAAGTATATGCTTGGACA-ACTGAAAGGAGCAGTGAAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261420" ref_strand="+" ref_description="SGN-E261420 [cLEG-57-L11]">
      <seq>ttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttgactgtttctgttggtttgacgatcaatttgtgtaattaattccatacttcaaaagccttttgtaaattctaccgtgtttattaatacggataactatagttcaacctaaacaaaaaacaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="66601" stop="68191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66901" g_stop="66948" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67426" g_stop="67886" g_length="461"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="509" r_length="461" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E261420" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>509</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E261420" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66901" e_stop="66948"/>
          <exon e_start="67426" e_stop="67886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAAATTCTACCGTGTTTATTAATACGGATAACTATAGTTCAACCTGG</genome_strand>
        <mrna_strand>TTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAAATTCTACCGTGTTTATTAATACGGATAACTATAGTTCAACCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258850" ref_strand="+" ref_description="SGN-E258850 [cLEG-41-I11]">
      <seq>ttggacatactgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttgactgtttctgttggtttgacgatcaatttgtgtaattaattccatacttcaaaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="66601" stop="68132"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66901" g_stop="66948" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="48" r_length="48" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67426" g_stop="67832" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="49" r_stop="455" r_length="407" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E258850" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>455</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E258850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66901" e_stop="66948"/>
          <exon e_start="67426" e_stop="67832"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAG</genome_strand>
        <mrna_strand>TTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E733056" ref_strand="+" ref_description="SGN-E733056 [LB03DD10]">
      <seq>ctgaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttgactgtttctgttggtttgacgatcaatttgtgtaattaattccatacttcaaaagccttttgtaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="66610" stop="68143"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66910" g_stop="66948" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67426" g_stop="67842" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="456" r_length="417" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="457" polyA_stop="469"/>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E733056" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E733056" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66910" e_stop="66948"/>
          <exon e_start="67426" e_stop="67842"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAA</genome_strand>
        <mrna_strand>CTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E357696" ref_strand="+" ref_description="SGN-E357696 [cTOS-24-D17]">
      <seq>gaaggagcagtggagccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttgactgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="66612" stop="68083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66912" g_stop="66948" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67426" g_stop="67783" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="395" r_length="358" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E357696" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>395</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E357696" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66912" e_stop="66948"/>
          <exon e_start="67426" e_stop="67783"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTT</genome_strand>
        <mrna_strand>GAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E221345" ref_strand="+" ref_description="SGN-E221345 [cLEL-22-C14](-)">
      <seq>gccctgcattaactatttccaaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttgactgttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="66626" stop="68083"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66926" g_stop="66948" g_length="23"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="23" r_length="23" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477">
            <donor d_prob="0.972" d_score="0.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="67426" g_stop="67780" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="24" r_stop="378" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="382" polyA_stop="399"/>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E221345" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="0.947" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E221345" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66926" e_stop="66948"/>
          <exon e_start="67426" e_stop="67780"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACT</genome_strand>
        <mrna_strand>GCCCTGCATTAACTATTTCCAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375691" ref_strand="+" ref_description="SGN-E375691 [TUS-35-A23](-)">
      <seq>gaaaacattttaaccgtctaatgtgtccttcataaagcactttgattttggttgcataggataagatattgtccccgattctctgctagtagcatcatttgttttttttctgaaattatgagttctgttaaatggctttccaagaccagttaaaactggtttgtgtttcgcgaagcattttgtgttatttatgtttcttaaggtgggaaaggattctggattacatttcaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttgactgtttctgttggtttgacgatcaatttgtgtaattaattccatacttcaaaagccttttgtaaattctaccgtgtttattaatacggataactatagttcaacctggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="66895" stop="68191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67195" g_stop="67886" g_length="692"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="692" r_length="692" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="693" polyA_stop="703"/>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E375691" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>692</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375691" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67195" e_stop="67886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAAATTCTACCGTGTTTATTAATACGGATAACTATAGTTCAACCTGG</genome_strand>
        <mrna_strand>GAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATTTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAAATTCTACCGTGTTTATTAATACGGATAACTATAGTTCAACCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375687" ref_strand="+" ref_description="SGN-E375687 [TUS-35-A17](-)">
      <seq>gtgtccttcataaagcactttgattttggttgcataggataagatattgtccccgattctctgctagtagcatcatttgttttttttctgaaattatgagttctgttaaatggctttccaagaccagttaaaactggtttgtgtttcgcgaagcattttgtgttatttatgtttcttaaggtgggaaaggattctggattacatttcaggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttgactgtttctgttggtttgacgatcaatttgtgtaattaattccatacttcaaaagccttttgtaaattctaccgtgtttattaatacggataactatagttcaacctggaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="66917" stop="68191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67217" g_stop="67886" g_length="670"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="670" r_length="670" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="671" polyA_stop="681"/>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E375687" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>670</cumulative_length_of_scored_exons>
        <coverage percentage="0.984" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E375687" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67217" e_stop="67886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAAATTCTACCGTGTTTATTAATACGGATAACTATAGTTCAACCTGG</genome_strand>
        <mrna_strand>GTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATTTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAAATTCTACCGTGTTTATTAATACGGATAACTATAGTTCAACCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E593223" ref_strand="+" ref_description="SGN-E593223 [36449]">
      <seq>ataagatcttgtccccgattctctgctagtagcatcatttgttttttctgaaattatgaattctgttaaatggctttccaagaccagtcaaaactggtttgtgtttcgcgaagcatgttgtgttatttatgtttcttaaggtgggaaaggattctggattacatttcaggttttgctttcaatttgctcgcttttgacggacccaaaccccgatgatccattggttcctgagattgctcacatgtacaagacagacaagtctaaatacgaaggaactgccaggagttggacccagaagtatgccatgggttaaaacatttaaccttgtgatggcttgaattgatataaacaaaaacaaatttcaaatgttttgttttctctattctccattaacaatgtgtagaatagcattaggcgttgctcctctacaggaagaacgatgatgctttgaatttcttcatgtatgaatgctaatatttgaattttgaacatgtgtgggaagcgtttttatggtttaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="66955" stop="68067"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67255" g_stop="67761" g_length="507"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="505" r_length="505" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E593223" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E593223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67255" e_stop="67761"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGT</genome_strand>
        <mrna_strand>ATAAGATCTTGTCCCCGATTCTCTGCTAGTAGCATCATTTG--TTTTTTCTGAAATTATGAATTCTGTTAAATGGCTTTCCAAGACCAGTCAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCGCTTTTGACGGACCCAAACCCCGATGATCCATTGGTTCCTGAGATTGCTCACATGTACAAGACAGACAAGTCTAAATACGAAGGAACTGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAACATTTAACCTTGTGATGGCTTGAATTGATATAAACAAAAACAAATTTCAAATGTTTTGTTTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTCCTCTACAGGAAGAACGATGATGCTTTGAATTTCTTCATGTATGAATGCTAATATTTGAATTTTGAACATGTGTGGGAAGCGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E222075" ref_strand="+" ref_description="SGN-E222075 [cLEL-36-I10](-)">
      <seq>aggttttgctttcaatttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgcccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttgactgtttctgttggtttgacgatcaatttgtgtaattaattccatacttcaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="67124" stop="68131"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67424" g_stop="67831" g_length="408"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="409" r_length="409" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="410" polyA_stop="423"/>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E222075" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>408</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E222075" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67424" e_stop="67831"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCG-CCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAA</genome_strand>
        <mrna_strand>AGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E270605" ref_strand="+" ref_description="SGN-E270605 [cLEN-1-O11](-)">
      <seq>tttgctcacttttgacggacccaaaccctgacgaccccttggttcctgagattgctcacatgtacaagactgacaagtccaaatacgaaggatccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttgactgtttctgttggtttgacgatcaatttgtgtaattaattccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="67139" stop="68123"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67439" g_stop="67830" g_length="392"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="392" r_length="392" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E270605" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>392</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E270605" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67439" e_stop="67830"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAA</genome_strand>
        <mrna_strand>TTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGATCCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237223" ref_strand="+" ref_description="SGN-E237223 [cLEL-7-O7](-)">
      <seq>ctcacttttgacggacccaaaccctgacgaccccttggttcctaagattgctcacatgtacaagactgacaagtccaaatacgaaggaaccgccaggagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttgactgtttctgttggtttgacgatcaatttgtgtaattaattccatacttcaaaagccttttgtaaattctaccgtgtttattaatacggataactatagttcaacctggaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="67143" stop="68191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67443" g_stop="67886" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="444" r_length="444" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="445" polyA_stop="461"/>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E237223" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237223" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67443" e_stop="67886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAAATTCTACCGTGTTTATTAATACGGATAACTATAGTTCAACCTGG</genome_strand>
        <mrna_strand>CTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTAAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAAATTCTACCGTGTTTATTAATACGGATAACTATAGTTCAACCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E237331" ref_strand="+" ref_description="SGN-E237331 [cLEL-7-O7](-)">
      <seq>ttgctcacatgtacaagactgacaagtccaaatacgaaggaaccgcccagagttggacccagaagtatgccatgggttaaaaaatttaaccctatgatggcttgaactgatataaacaaaaacaaatttcaaatgttttatcttctctattctccattaacaatgtgtagaatagcattaggcgttgcttctctacaggaagaacgataatgctttgaatttgtttatgtatgaatactaatatttgaactttgaacatgtgtgggaagcgtatgtatctgctttttgactgtttctgttggtttgacgatcaatttgtgtaattaattccatacttcaaaagccttttgtaaattctaccgtgtttattaatacggataactatagttcaacctggaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="67190" stop="68191"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67490" g_stop="67886" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="397" r_length="397" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="398" polyA_stop="414"/>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E237331" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>397</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E237331" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67490" e_stop="67886"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAAATTCTACCGTGTTTATTAATACGGATAACTATAGTTCAACCTGG</genome_strand>
        <mrna_strand>TTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCCAGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAAATTCTACCGTGTTTATTAATACGGATAACTATAGTTCAACCTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E573811" ref_strand="+" ref_description="SGN-E573811 [33180]">
      <seq>ataaaaacgcttcccacacatgttcaaaaattcaaatattagcattcatacatgaagaaattcaaagcatcatcgttcttcctgtagaggagcaacgcctaatgctattctacacattgttaatggagaatagagaaaacaaaacatttgaaatttgtttttgtttatatcaattcaagccatcacaaggttaaatgttttaacccatggcatacttctgggtcca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="68067" stop="67243"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67767" g_stop="67543" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="226" r_length="226" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E573811" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>225</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E573811" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67767" e_stop="67543"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATACATACGCTTCCCACACATGTTC-AAAGTTCAAATATTAGTATTCATACATAAACAAATTCAAAGCATTATCGTTCTTCCTGTAGAGAAGCAACGCCTAATGCTATTCTACACATTGTTAATGGAGAATAGAGAAGATAAAACATTTGAAATTTGTTTTTGTTTATATCAGTTCAAGCCATCATAGGGTTAAATTTTTTAACCCATGGCATACTTCTGGGTCCA</genome_strand>
        <mrna_strand>ATAAAAACGCTTCCCACACATGTTCAAAAATTCAAATATTAGCATTCATACATGAAGAAATTCAAAGCATCATCGTTCTTCCTGTAGAGGAGCAACGCCTAATGCTATTCTACACATTGTTAATGGAGAATAGAGAAAACAAAACATTTGAAATTTGTTTTTGTTTATATCAATTCAAGCCATCACAAGGTTAAATGTTTTAACCCATGGCATACTTCTGGGTCCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367110" ref_strand="+" ref_description="SGN-E367110 [cLPT-5-O20]">
      <seq>tcatccacaatacacacgcaaccaccacccacacgcacaagcaacccgaaccaccccatacccacaacatctccaacccgatccgttttgggtccttaccggccacccccgaatcaccaccgcccgtgccaccccccaatactcatcccatgttaacccgtggcaaagccggtatctttaaacccaaaacctttcaggctaccatactaccaaatacaccccttcccgatagtgaaccaacaacctactctgttgcctcaaaaaatgcttattggcgtcatgctatggatgacgagtttaaggctttgactgatcaggaaacttgggttcttgtacctaagccccatgggcggcacccagtgggctgtaaatgggtgtacaaaattaaacacaatgcggatggcagtatttccaggtacaaggctcgtttggttgctaaaggctacaatcaggagtatggtcttgattactccgagacattcagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="88369" stop="89454"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88669" g_stop="89154" g_length="486"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="486" r_length="486" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E367110" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>486</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367110" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88669" e_stop="89154"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACCCACAATATACCCGCAACCACCACCCACACTCACAGCCAACCCGAACCACCCCATACCCACAACATCTCCAGCCCGATCCGTTTTGGGTCCTTCCCGGCTGCCCCCGAATTACCATCGCCCGTGCCACCCCCCAATACTCATCCCATCTTAACCCGTGGCAAAGCCGATATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTATTGCCTCAAAAAATGCTTATTGACGTCATTTTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTC</genome_strand>
        <mrna_strand>TCATCCACAATACACACGCAACCACCACCCACACGCACAAGCAACCCGAACCACCCCATACCCACAACATCTCCAACCCGATCCGTTTTGGGTCCTTACCGGCCACCCCCGAATCACCACCGCCCGTGCCACCCCCCAATACTCATCCCATGTTAACCCGTGGCAAAGCCGGTATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTGTTGCCTCAAAAAATGCTTATTGGCGTCATGCTATGGATGACGAGTTTAAGGCTTTGACTGATCAGGAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCGGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGTCTTGATTACTCCGAGACATTCAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E245978" ref_strand="+" ref_description="SGN-E245978 [cLEF-51-O12]">
      <seq>gtttggttgctaaaggctacaatcaggagtatgggcttgattactccgagacattcagtcctgttattcggcaggaaaccattcgcctggtactgtcactcgccgtgcgcaacaattggctcatcaatcagttggatgtttccaatgcttttcttcatggcatgcttgatgaaacaatctacatgacgcaaccaccgggctatgttgatcctcgcttccctcaacatgtttgcaaactccagaagtctctgtatgggctcaagcaagccccccgtgcttggtacgcacgtctgaaaacgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="88795" stop="89695"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89095" g_stop="89395" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E245978" ref_strand="+">
        <total_alignment_score>0.957</total_alignment_score>
        <cumulative_length_of_scored_exons>301</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E245978" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89095" e_stop="89395"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCGTTCACCTGGTACTGTCACTCGTCGTGCGCAACAATTGACTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCGCTTCCCTCAACATGTTTACAAACTCCAGAAGTCTCTGTATGGGCTCAAGTAAGCCCTCTGTGCTTGGTACACACGACTGAAAATGTT</genome_strand>
        <mrna_strand>GTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCATTCGCCTGGTACTGTCACTCGCCGTGCGCAACAATTGGCTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACAATCTACATGACGCAACCACCGGGCTATGTTGATCCTCGCTTCCCTCAACATGTTTGCAAACTCCAGAAGTCTCTGTATGGGCTCAAGCAAGCCCCCCGTGCTTGGTACGCACGTCTGAAAACGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258205" ref_strand="+" ref_description="SGN-E258205 [cLEG-49-B23]">
      <seq>aatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctggttctgtttattaactttataaataaaaggtattataagagtaacaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="97978" stop="97051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97678" g_stop="97351" g_length="328"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.921"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E258205" ref_strand="+">
        <total_alignment_score>0.921</total_alignment_score>
        <cumulative_length_of_scored_exons>328</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97678" e_stop="97351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTTTTCTTTCTCTGCATTTATTTTTTCTCTCAAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGAG-TACCGCTATTTCTTTAACAGG-TTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAATTTCTGTGGACTCGGATTAATTCTTGTATTTTAAATT-TTTTCTGCTTCATCTTGTTTCTGTTTCTGTTCATTAACTTCATAAATACAAGTTATTGTAAGAATAACACTAT</genome_strand>
        <mrna_strand>AATTTTTCTTTCTCTGCATTTA-TTTTTCTCTC-AAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGGTTCTGTTTATTAACTTTATAAATAAAAGGTATTATAAGAGTAACAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262800" ref_strand="+" ref_description="SGN-E262800 [cLEG-63-P6]">
      <seq>cttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="98032" stop="97051"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97732" g_stop="97353" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="381" r_length="381" r_score="0.934"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E262800" ref_strand="+">
        <total_alignment_score>0.934</total_alignment_score>
        <cumulative_length_of_scored_exons>380</cumulative_length_of_scored_exons>
        <coverage percentage="0.957" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97732" e_stop="97353"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTCAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTTCTCTCAAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGA-GTACCGCTATTTCTTTAACAGG-TTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAATTTCTGTGGACTCGGATTAATTCTTGTATTTTAAATT-TTTTCTGCTTCATCTTGTTTCTGTTTCTGTTCATTAACTTCATAAATACAAGTTATTGTAAGAATAACACT</genome_strand>
        <mrna_strand>CTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAATTTTTCTTTCTCTGCATTTATT-TTTCTCTC-AAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261310" ref_strand="+" ref_description="SGN-E261310 [cLEG-68-F10]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="98041" stop="97216"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="97742" g_stop="97516" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E261310" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>227</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="97742" e_stop="97516"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTCAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTTCTCTCAAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGA-GTACCGCTATTTCTTTAACAGG-TTAATCCGTTTTATCTTGGGAGAAATT</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAATTTTTCTTTCTCTGCATTTA-TTTTTCTCTC-AAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E395006" ref_strand="+" ref_description="SGN-E395006 [TUS-34-O4]">
      <seq>tcgagtttttttttttttttttttttaaaaagaagcaaaatctttattcatatcaactgcaattacattgagtttgaaaaggccatcactaaggtagtcttttcctacatacatatcatttttgcttactactactttatcaaaaacaaatacacatttaaatccattcttggtcagaattggaattgaaactaaattatttctcaattctggaacatatgagaccatattcaaagtcactaccttgcctgatgtcatctttaataggactttgccagttccttccacctttgcaacagcggagtttgccataaataatttttcatctgtaagtgctagagtatatgatgaaaataattctttgttggcacaaacatggcatgaggcaccagaatctatccaccattctcttggatttccaaccaagttacattctgaaagcattgcacagagatcgtccatttctcctttggattcagccaagtttgcttgatccttctttttcttgtccttcttaggaccccggcattcattacccctatgaccatgtttaccacaattaaagcagtttccattgaatttctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="69880" stop="102296"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="100677" g_stop="100701" g_length="25"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="25" r_length="25" r_score="0.480"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="100702" i_stop="101436" i_length="735">
            <donor d_prob="0.463" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="101437" g_stop="101996" g_length="560"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="585" r_length="560" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E395006" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>585</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E395006" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="100677" e_stop="100701"/>
          <exon e_start="101437" e_stop="101996"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAGGTCCTATTTTTACCCTCTTAGGTATAGGAACTTGGACTTTGGCTAGACACCCCCACACTTTGAAATATTTCAAGTTGGGTTTTCTACCTTTTCATTTCTCATATGGAATTACATTTGTCTTTGAGTGAGGAACTCTGTTAAGTATTTGATTTGCTGTAAGCATAGCTTCTCCCTCCCCCCCCCCCTCCCAAGTTCTGTGGTAAACCTAAACTTATAAGTAATGCATTCATCATTTCTTTTAAAGTTTGGTTTTTCCTTTATGCAATTCCATTAGACTGAGGAGTGTAGGGCACAGTAGTTTGCTGGATTATTCCATTTTCTAAACATATTTCTGCAAATGGAGATTCATATTCTTCACCTCTATCACTTCTGATCATTTTGATATTTTTATCTAAATGATTTTCAACTTCAGTTTTATATTGCCTAAATGCATCTATTGTTTCAACCTTAACATTTAGCAAATAAACATAACAATATCTAGTGCAATCGTCAATAAAAGTTATGAAATACTTTTTCCCACCACGTGATGGTGTTGACTTCATGTCATAAGTATCAGTGTGAATCAATTCTAAAGGATTTGAATTCCTTTCAACAGATTTATAAGGATGCTTAGCATTCTTAGATTCAACGCAAATTTGACATTTTGATTTATTGCACTCAAATTTTGGCAAAATATTTAAGTTAATCTGTTTTCGCGAGGTTTTGTCATTAACGTGTCCCAAACGTTCATGCCATAAACATTTAGACTCAAGCAAGTAAGAAGATGCAAAATCTTTATTCATATTAACTGCAATTACATTGAGTTTGAAAAGGTCATCACTAAGGTAACCTTTTCCTACATACATATCATTCTTGCTTACTACTACTTTATCAGAAACAAATACACATATGAATCCATTCTTGGTCAGAATTGGAATTGAAACTAAATTCTTTCTCAATTCTGGAACATATGAGACCCTATTCAAAGTCACCACCTTCCCTGCTGTCATCTTTAATAGGACTTTGCCAGTTCCTTCCACCTTTGCAACAGCGGAGTTTGCCATAAACAATTTTTCATCTGTAAGTGCTGGAGTATATGATGAAAATAATTCTTTGTTGGCACAAACATGGCATGAGGCACCAGAATCTATCCACCATTCTCTTGGATTTCCAACCAAGTTACATTCTGAAAGCATTGCACAGAGATCATCCATTTCTCCTTTGGATTCAGCCGAGTTTGCTTGATCTTTCTTTTTCTTGTCCTTCTTAGGACCCCGACATTCATTATCCCTATGACCATGTTTACCACAATTAAAGCAGTTTCCATTGAATTTCTT</genome_strand>
        <mrna_strand>TCGAGTTTTTTTTTTTTTTTTTTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAGAAGCAAAATCTTTATTCATATCAACTGCAATTACATTGAGTTTGAAAAGGCCATCACTAAGGTAGTCTTTTCCTACATACATATCATTTTTGCTTACTACTACTTTATCAAAAACAAATACACATTTAAATCCATTCTTGGTCAGAATTGGAATTGAAACTAAATTATTTCTCAATTCTGGAACATATGAGACCATATTCAAAGTCACTACCTTGCCTGATGTCATCTTTAATAGGACTTTGCCAGTTCCTTCCACCTTTGCAACAGCGGAGTTTGCCATAAATAATTTTTCATCTGTAAGTGCTAGAGTATATGATGAAAATAATTCTTTGTTGGCACAAACATGGCATGAGGCACCAGAATCTATCCACCATTCTCTTGGATTTCCAACCAAGTTACATTCTGAAAGCATTGCACAGAGATCGTCCATTTCTCCTTTGGATTCAGCCAAGTTTGCTTGATCCTTCTTTTTCTTGTCCTTCTTAGGACCCCGGCATTCATTACCCCTATGACCATGTTTACCACAATTAAAGCAGTTTCCATTGAATTTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E375520" ref_strand="+" ref_description="SGN-E375520 [TUS-34-B10](-)">
      <seq>atgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattttggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactttagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtttcatatgttccagaattgagaaataatttagtttcaattccaattttgaccaagaatggatttaaatgtgtatttgtttttgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttttttttaaaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="102240" stop="49863"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101940" g_stop="101417" g_length="524"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="524" r_length="524" r_score="0.920"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E375520" ref_strand="+">
        <total_alignment_score>0.920</total_alignment_score>
        <cumulative_length_of_scored_exons>524</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E375520" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="101940" e_stop="101417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTCGGGGTCCTAAGAAGGACAAGAAAAAGAAAGATCAAGCAAACTCGGCTGAATCCAAAGGAGAAATGGATGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCCAGCACTTACAGATGAAAAATTGTTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACAGCAGGGAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTCATATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAGAATGATATGTATGTAGGAAAAGGTTACCTTAGTGATGACCTTTTCAAACTCAATGTAATTGCAGTTAATATGAATAAAGATTTTGCATCTTCTTACTTGCTTGAGTCTAAATGTT</genome_strand>
        <mrna_strand>ATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTTTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTTTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTTTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTTTGACCAAGAATGGATTTAAATGTGTATTTGTTTTTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTTTTTTTAAAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369759" ref_strand="+" ref_description="SGN-E369759 [TUS-25-O3](-)">
      <seq>taaggttgagaatcgaagaggataataaggctgcagaaaagaggtcacgtggtaattcagcaatatctggagtaaattttgttgaagaagattccacaaaattcaagaaaagaaagaaagcatctggtccaaaacgcaatcctcctaagaagaaattcaatggaaactgctttaattgtggtaaacatggtcatagggctaatgaatgccggggtcctaagaaggacaagaaaaagaaggatcaagcaaacttggctgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcacttacagatgaaaaattatttatggcaaactccgctgttgcaaaggtggaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttctgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttgatatgaataaagattttgcttcttcttaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="102445" stop="101137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102145" g_stop="101437" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E369759" ref_strand="+">
        <total_alignment_score>0.961</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369759" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102145" e_stop="101437"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTAGATTAAATTTTATTGAAGAAGATTCCACAAAATTAAAGAAAAGAAAGAAAACATCTGGTCCAAAAAGCAATCAACCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGATAATGAATGTCGGGGTCCTAAGAAGGACAAGAAAAAGAAAGATCAAGCAAACTCGGCTGAATCCAAAGGAGAAATGGATGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCCAGCACTTACAGATGAAAAATTGTTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACAGCAGGGAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTCATATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAGAATGATATGTATGTAGGAAAAGGTTACCTTAGTGATGACCTTTTCAAACTCAATGTAATTGCAGTTAATATGAATAAAGATTTTGCATCTTCTTA</genome_strand>
        <mrna_strand>TAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTGGAGTAAATTTTGTTGAAGAAGATTCCACAAAATTCAAGAAAAGAAAGAAAGCATCTGGTCCAAAACGCAATCCTCCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGCTAATGAATGCCGGGGTCCTAAGAAGGACAAGAAAAAGAAGGATCAAGCAAACTTGGCTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCACTTACAGATGAAAAATTATTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTGATATGAATAAAGATTTTGCTTCTTCTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E250407" ref_strand="-" ref_description="SGN-E250407 [cLEG-6-H3]">
      <seq>aattgtggtaaacatggtcatagggctaatgaaagccggggtcttaagaaggacaagataaagaaggatcaagcaaacttgggtgaatccaaaggagaaatggacgatctctgtgcaatgctttcagaatgtaacttggttggaaatccaagagaatggtggatagattctggtgcctcatgccatgtttgtgccaacaaagaattattttcatcatatactctagcagttacagatgagaaattatttatggccaactccgctgttgcaaaggtgtaaggaactggcaaagtcctattaaagatgacatcaggcaaggtagtgactttgaatatggtctcatatgttccagaattgagaaataatttagtttcaattccaattctgaccaagaatggatttaaatgtgtatttgtttctgataaagtagtagtaagcaaaaatgatatgtatgtaggaaaagactaccttagtgatggccttttcaaactcaatgtaattgcagttcatatgaataaagattttgcttcttattaaaaaaaaaaaaaaaaaaagactcgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="102272" stop="101137"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="101972" g_stop="101446" g_length="527"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="527" r_length="527" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="536" polyA_stop="556"/>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E250407" ref_strand="-">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>527</cumulative_length_of_scored_exons>
        <coverage percentage="0.938" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E250407" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="101972" e_stop="101446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTGGTAAACATGGTCATAGGGATAATGAATGTCGGGGTCCTAAGAAGGACAAGAAAAAGAAAGATCAAGCAAACTCGGCTGAATCCAAAGGAGAAATGGATGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCCAGCACTTACAGATGAAAAATTGTTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACAGCAGGGAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTCATATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAGAATGATATGTATGTAGGAAAAGGTTACCTTAGTGATGACCTTTTCAAACTCAATGTAATTGCAGTTAATATGAATAAAGATTTTGC</genome_strand>
        <mrna_strand>AATTGTGGTAAACATGGTCATAGGGCTAATGAAAGCCGGGGTCTTAAGAAGGACAAGATAAAGAAGGATCAAGCAAACTTGGGTGAATCCAAAGGAGAAATGGACGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCTAGCAGTTACAGATGAGAAATTATTTATGGCCAACTCCGCTGTTGCAAAGGTGTAAGGAACTGGCAAAGTCCTATTAAAGATGACATCAGGCAAGGTAGTGACTTTGAATATGGTCTCATATGTTCCAGAATTGAGAAATAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTTAAATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAAAATGATATGTATGTAGGAAAAGACTACCTTAGTGATGGCCTTTTCAAACTCAATGTAATTGCAGTTCATATGAATAAAGATTTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E419244" ref_strand="+" ref_description="SGN-E419244 [STM-29-A12]">
      <seq>ttttttttttgattttgtgggatcttcttcacaatatttactcctgatattgctgaattaccacgcgacctcttttctgcggccttgttatcctcttcgattctcagccttaccatgagatcttcaacagtcatctccttgcgtttatgtttcaagtagtttttgaagtccttccacaatggaggtaacttctctataatggcagccacttgaaaagcatcattcacaaccaatccttcagcaaggagatcatggattatgacctgcaattcttgaacttgggtgacgacggtcttactgtctatcatcttatagtccagaaactttgccacaataaatttcttcattccggcatcctctgttttgtacttcttttctaaagcatcccagagttcttttgaggttttcacattactgtacacattgtatagatcatcctgcaggccactcagaatataatttttacacaaaaaatcagaatgtgtccatgcttctgttaccaagaatcgttcttcaggcggagtttcatccgacataacaggaacgttctcattaatgaacctctgcagactcaatgtagtcagatagaaagacatcttttgctgccatctcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="101733" stop="102949"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102033" g_stop="102649" g_length="617"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="616" r_length="616" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E419244" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>617</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E419244" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102033" e_stop="102649"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTTTCTTTAATTTTGTGGAATCTTCTTCAATAAAATTTAATCTAGATATTGCTGAATTACCACGTGACCTCTTTTCTGCAGCCTTATTATCCTCTTCGATTCTCAACCTTACTATGAGATCTTCAACAGTCATTTCCTTACGTTTGTGTTTCAAGTAGTTTTTAAAGTCCTTCCACAATGGAGGTAACTTTTCAATAATTGCAGCCACTTGAAAAGCATCATCCACGATCAATCCTTCAGCAAGGAGATCATGGATTATGACCTGCAATTCTTGAACTTGGGTGACGACAGTCTTACTGTCTATCATCTTATAGTCTAGAAATTTTGCCACAATGAATTTATTCATTCCGGCATCTTCTGTTTTGTACTTCTTTTCTAAAGCATCCCAGAGTTCTTTTGAGGTTTTGGCATTGCTGTACACATTGTACAGATCATCTTGAAGACCACTCAAAATATAATTTTTACACAAAAAATCTGAGTGTGTCCATGCTTCTGTTACCAAGAATCGTTCATCAGCCGGAGTTTTATCTGACATAACAGGAACATTCTCATTGATGAACTTCTGCAGACCCAACGTAGTGATATAGAAGAACAACTTTTGCTGCCATCTCTTAA</genome_strand>
        <mrna_strand>TTTTTTTTTTGATTTTGTGGGATCTTCTTC-ACAATATTTACTCCTGATATTGCTGAATTACCACGCGACCTCTTTTCTGCGGCCTTGTTATCCTCTTCGATTCTCAGCCTTACCATGAGATCTTCAACAGTCATCTCCTTGCGTTTATGTTTCAAGTAGTTTTTGAAGTCCTTCCACAATGGAGGTAACTTCTCTATAATGGCAGCCACTTGAAAAGCATCATTCACAACCAATCCTTCAGCAAGGAGATCATGGATTATGACCTGCAATTCTTGAACTTGGGTGACGACGGTCTTACTGTCTATCATCTTATAGTCCAGAAACTTTGCCACAATAAATTTCTTCATTCCGGCATCCTCTGTTTTGTACTTCTTTTCTAAAGCATCCCAGAGTTCTTTTGAGGTTTTCACATTACTGTACACATTGTATAGATCATCCTGCAGGCCACTCAGAATATAATTTTTACACAAAAAATCAGAATGTGTCCATGCTTCTGTTACCAAGAATCGTTCTTCAGGCGGAGTTTCATCCGACATAACAGGAACGTTCTCATTAATGAACCTCTGCAGACTCAATGTAGTCAGATAGAAAGACATCTTTTGCTGCCATCTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E251204" ref_strand="+" ref_description="SGN-E251204 [cLEG-10-L14]">
      <seq>tcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctctattgtggaaggactttaaaaactacttgaaacacaaacgcaaggagatgattgttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="103064" stop="101857"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102764" g_stop="102157" g_length="608"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="608" r_length="608" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E251204" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>608</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E251204" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102764" e_stop="102157"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTACACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGTTGTTCTTCTATATCACTACGTTGGGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATAAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTTCAAGATGATCTGTACAATGTGTACAGCAATGCCAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAATAAATTCATTGTGGCAAAATTTCTAGACTATAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCCTTGCTGAAGGATTGATCGTGGATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGTAAGGAAATGACTGTTGA</genome_strand>
        <mrna_strand>TCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAGGATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCTATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAAGGAGATGATTGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261540" ref_strand="+" ref_description="SGN-E261540 [cLEG-57-K8]">
      <seq>taaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagtggtctgcaagatgatctgtacaatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaaacagaagatgccggaatgaagaaattcattgtggcaaaatttctagactttaagatgatagacagtaagactgtcgtcacccaagttcaagaattgcaggttataatccatgatctccttgctgaaggattgattgtgaatgatgcttttcaagtggctgcaattattgaaaagttacctcctattgtggaaggactttaaaaactacttgaaacacaaacgcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="103243" stop="101872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102943" g_stop="102172" g_length="772"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="772" r_length="772" r_score="0.960"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E261540" ref_strand="+">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>772</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261540" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102943" e_stop="102172"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAAACCTTCATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTATTTTTTACTGTTAGTATTTTTAAATACTTAATTTATCTGCCATTTGTGACAG-AAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTACACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGTTGTTCTTCTATATCACTACGTTGGGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATAAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTTCAAGATGATCTGTACAATGTGTACAGCAATGCCAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAATAAATTCATTGTGGCAAAATTTCTAGACTATAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCCTTGCTGAAGGATTGATCGTGGATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCC-ATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGTAA</genome_strand>
        <mrna_strand>TAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTA-TTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTACAATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAAGAAATTCATTGTGGCAAAATTTCTAGACTTTAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAGGATTGATTGTGAATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCTATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262550" ref_strand="+" ref_description="SGN-E262550 [cLEG-63-C22]">
      <seq>ttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctgggacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaactgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaattatattttgagtggtctgcaagatgatctgtancatgtgtacagcaatgcaaaaacctcaaaagaactctgggatgctttagaaaagaagtacaaacagaagatgccggaaatgagaaaatcattgtgggcaaatttctagacttttagatgatagacagtaagactgtcgtcacccaagtttcagaattgcaggttataatccatgatctccttgctgaaaggatgattgtgaatgatgcttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="103278" stop="101947"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102978" g_stop="102247" g_length="732"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="727" r_length="727" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E262550" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>732</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262550" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102978" e_stop="102247"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAGCAGTTTTTGTATTTGAGGTTTCTGGAGATTAAAACCTTCATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTATTTTTTACTGTTAGTATTTTTAAATACTTAATTTATCTGCCATTTGTGACAG-AAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTACACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGTTGTTCTTCTATATCACTACGTTGGGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATAAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTTCAAGATGATCTGTACAATGTGTACAGCAATGCCAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAATAAATTCATTGTGGCAAAATTTCTAGACTATAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCCTTGCTGAAGGATTGATCGTGGATGATGCTTT</genome_strand>
        <mrna_strand>TTATA-CAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTA-TTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGGACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAA-CTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGT-AAAATTATATTTTGAGTGGTCTGCAAGATGATCTGTANCATGTGTACAGCAATGCAAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTAC-AAACAGAAGATGCCGGAAATGAGAAAATCATTGTGGGCAAATTTCTAGACTTTTAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTTCAGAATTGCAGGTTATAATCCATGATCTCCTTGCTGAAAGGATGATTGTGAATGATGCTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E253427" ref_strand="+" ref_description="SGN-E253427 [cLEG-24-L5]">
      <seq>tggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctggttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagattttttgtgtaaaaattatattttgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="103389" stop="102180"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103089" g_stop="102480" g_length="610"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="611" r_length="611" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E253427" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>610</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E253427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103089" e_stop="102480"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTCGGATTAATTCTTGTATTTTAAATT-TTTTCCGCTTCATCTTGTTTCTGCTTCTGTTCATTAACTTCATAAATACAAGTTATTGTAAAAATAACAATCTTAAGAAATTTTA-GCAGTTTTTGTATTTGAGGTTTCTGGAGATTAAAACCTTCATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTATTTTTTACTGTTAGTATTTTTAAATACTTAATTTATCTGCCATTTGTGACAG-AAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTACACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGTTGTTCTTCTATATCACTACGTTGGGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATAAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGT</genome_strand>
        <mrna_strand>TGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGGTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTA-TTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261066" ref_strand="+" ref_description="SGN-E261066 [cLEG-65-C11]">
      <seq>tttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcataaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagatttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttggtaacagaagcatggacacactcagatttttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="103493" stop="102202"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103178" g_stop="102502" g_length="677"/>
          <reference_exon_boundary r_type="cDNA" r_start="29" r_stop="706" r_length="678" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E261066" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>677</cumulative_length_of_scored_exons>
        <coverage percentage="0.959" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261066" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103178" e_stop="102502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAATTCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTTTAAATT-TTTTCCGCTTCATCTTGTTTCTGCTTCTGTTCATTAACTTCATAAATACAAGTTATTGTAAAAATAACAATCTTAAGAAATTTTA-GCAGTTTTTGTATTTGAGGTTTCTGGAGATTAAAACCTTCATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTATTTTTTACTGTTAGTATTTTTAAATACTTAATTTATCTGCCATTTGTGACAG-AAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTACACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGTTGTTCTTCTATATCACTACGTTGGGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATAAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTT</genome_strand>
        <mrna_strand>TTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCATAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTA-TTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGATTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258047" ref_strand="+" ref_description="SGN-E258047 [cLEG-48-K15]">
      <seq>ttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacgattcttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="103278" stop="102234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="102978" g_stop="102534" g_length="445"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="443" r_length="443" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E258047" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258047" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="102978" e_stop="102534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTAGCAGTTTTTGTATTTGAGGTTTCTGGAGATTAAAACCTTCATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTATTTTTTACTGTTAGTATTTTTAAATACTTAATTTATCTGCCATTTGTGACAG-AAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTACACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGTTGTTCTTCTATATCACTACGTTGGGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATAAAACTCCGGCTGATGAACGATTCTTG</genome_strand>
        <mrna_strand>TTATA-CAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTA-TTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACGATTCTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E263584" ref_strand="+" ref_description="SGN-E263584 [cLEG-60-L13]">
      <seq>tgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctgttatgtcagatgaaacttcggctgatgaacg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="103493" stop="102241"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103178" g_stop="102541" g_length="638"/>
          <reference_exon_boundary r_type="cDNA" r_start="69" r_stop="707" r_length="639" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E263584" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>638</cumulative_length_of_scored_exons>
        <coverage percentage="0.902" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263584" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103178" e_stop="102541"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAATTCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTTTAAATT-TTTTCCGCTTCATCTTGTTTCTGCTTCTGTTCATTAACTTCATAAATACAAGTTATTGTAAAAATAACAATCTTAAGAAATTTTA-GCAGTTTTTGTATTTGAGGTTTCTGGAGATTAAAACCTTCATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTATTTTTTACTGTTAGTATTTTTAAATACTTAATTTATCTGCCATTTGTGACAG-AAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTACACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGTTGTTCTTCTATATCACTACGTTGGGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATAAAACTCCGGCTGATGAACG</genome_strand>
        <mrna_strand>TTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTA-TTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATGAAACTTCGGCTGATGAACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E276669" ref_strand="+" ref_description="SGN-E276669 [cLEN-14-A16]">
      <seq>ttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttatacagtttctgtgtttgaggtttctggagattaaaacctttatggttttctactctacttgaatttttaaaatcattcgattaacgattaaaaaaacataaaaactttatcgttaaatcagaaacaggttgtgtaaagatttgctctttactgttagtattttaaatacttaatttatctgccaattgtgacagaaaaaaaagactaattcaagtcaaacaaatgctggaacagtaagtgctgcaacaacaatggttgcacataatcgttcacatgctgccttagcaccggctgagaaacctgcaaagttttctggagtcgactttaagagatggcagcaaaagatgttcttctatctcactacgttgagtctgcagaagttcatcaatgagaatgttcctg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="103493" stop="102272"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103178" g_stop="102572" g_length="607"/>
          <reference_exon_boundary r_type="cDNA" r_start="28" r_stop="635" r_length="608" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E276669" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>607</cumulative_length_of_scored_exons>
        <coverage percentage="0.956" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276669" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103178" e_stop="102572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTAATTCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTTTAAATT-TTTTCCGCTTCATCTTGTTTCTGCTTCTGTTCATTAACTTCATAAATACAAGTTATTGTAAAAATAACAATCTTAAGAAATTTTA-GCAGTTTTTGTATTTGAGGTTTCTGGAGATTAAAACCTTCATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTATTTTTTACTGTTAGTATTTTTAAATACTTAATTTATCTGCCATTTGTGACAG-AAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTACACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGTTGTTCTTCTATATCACTACGTTGGGTCTGCAGAAGTTCATCAATGAGAATGTTCCTG</genome_strand>
        <mrna_strand>TTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACAATCTTAAGAAAATTTATACAGTTTCTGTGTTTGAGGTTTCTGGAGATTAAAACCTTTATGGTTTTCTACTCTACTTGAATTTTTAAAA-TCATTCGATTAACGATTAAAAAAACATAAAAACTTTATCGTTAAATCAGAAACAGGTTGTGTAAAGATTTGCTCTTTACTGTTAGTA-TTTTAAATACTTAATTTATCTGCCAATTGTGACAGAAAAAAAAGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAATGGTTGCACATAATCGTTCACATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGATGTTCTTCTATCTCACTACGTTGAGTCTGCAGAAGTTCATCAATGAGAATGTTCCTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365858" ref_strand="+" ref_description="SGN-E365858 [cLPT-8-J18]">
      <seq>tttgatgtactctggctggaattctgagtagtaccagggacctcatcacatttttcaacctcatcagcctcttcaggtagactatgattttgatcatcacagtcatttttcagttgttgttctgcatcatcttcacttccttcaattttctgcgaattgaataatttgatcacataatcttcatcatttgatccattatttttcaagcttgcatcttcatcaaatacaacatgaatgctttcttcaatgcattgagttcggacgctgaatattttgtaagccttactcgatgaagaatatccaacaaatactccttcatcactcctaagatcaaattttccagatcatccttgccattggtcagcacaaaacacctgcatgcaaattctctaagatagctgagcataggctttctgttgttgatcaactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="114782" stop="113751"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="114482" g_stop="114051" g_length="432"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="431" r_length="431" r_score="0.912"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E365858" ref_strand="+">
        <total_alignment_score>0.912</total_alignment_score>
        <cumulative_length_of_scored_exons>432</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365858" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="114482" e_stop="114051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGATGTACTCT-GATGGAATTCAGAGTAGTACCAGGTACCTCATCACACTTTTCCACTTTATCAGCCTCTTCAGGTAGACTATGATTTTGATCATCAAGGTCATTTTTCAATTGTTGATCTGCATCAGCTTCACTTCTTTCAATTTTCTGTGAATTGAACAGCTTGATCACATCATCTTCATCATTTGATCCATTATTTTTCAAGCTTCCATCTTCATCAAATACAACATGAATGCTTTCTTCAGTGCATTTGAGTTCGTTTGTTGAATATTCTGTAAGCCTTACTCGATGAAGAATATCCAACAAATACTCCTTCATCACTCCTAGGATCAAATTTTCCCAGATCATCCTTTCCATTGTTCAGCACAAAACATCTGCATCCAAATGCTCTAAGATAGCTCCGCATAGGCTTTCTGTTGTTGAGCAACTCA</genome_strand>
        <mrna_strand>TTTGATGTACTCTGGCTGGAATTCTGAGTAGTACCAGGGACCTCATCACATTTTTCAACCTCATCAGCCTCTTCAGGTAGACTATGATTTTGATCATCACAGTCATTTTTCAGTTGTTGTTCTGCATCATCTTCACTTCCTTCAATTTTCTGCGAATTGAATAATTTGATCACATAATCTTCATCATTTGATCCATTATTTTTCAAGCTTGCATCTTCATCAAATACAACATGAATGCTTTCTTCAATGCA-TTGAGTTCGGACGCTGAATATTTTGTAAGCCTTACTCGATGAAGAATATCCAACAAATACTCCTTCATCACTCCTAAGATCAAATTTT-CCAGATCATCCTTGCCATTGGTCAGCACAAAACACCTGCATGCAAATTCTCTAAGATAGCTGAGCATAGGCTTTCTGTTGTTGATCAACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330070" ref_strand="+" ref_description="SGN-E330070 [cTOD-5-A24]">
      <seq>taattcccatttaaaggggaaaaatattctcaaaatttttctgttcacaacagtgcatttctgccttaaactataccccaatgatttgaattcgaatttttttatctgattttataattaattttaaatataaatataaatatataaataatatatcaaaattcatatttacaattataataaattttaaattctaaattcgatgattggcccacagtggaacaatgttagctctaaatcatgccatctataaatatatatacattggcttaccattttgctcaattgtttcacaaagttttcttctctcactttatttatagtatatgtgtttttttcacttaaatccaagctgacatatatatttcccttctcttcgattctagctatcatttatcgaggaagaatataaatgaagatggtggaggaaagggagaataagtttgatccacaacaagtgattgatgaatttgagatattaagcaaagatgctgggaaaattcaagaagagaccttacaaaagattcttgaagaaaatggaaggacagaatatttgcaacaatggggtcttaatgggaaaacagatcaagtttctttcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="127029" stop="130221"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127329" g_stop="127723" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.959"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127724" i_stop="129722" i_length="1999">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129723" g_stop="129921" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="600" r_length="199" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E330070" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>594</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330070" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127329" e_stop="127723"/>
          <exon e_start="129723" e_stop="129921"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTCCCATTTAAAGGGGAAAAATATTCTCAAAATTTTTCTGTTCACAACACTGCATTTCTGCCTTAAACTATACCCCAATGATTTGAATTCGAATTTTTTTATCTGATTTTATAATTAA-TTT---TA-AA-TATAAATATATAAATAATATATCAAAATTCATATTTACAATTATAATAAATTTTAAATTCTAAATTCGATGATTGGCCCACAGTGGAACAATGTTAGCTCTAAATCATGCCATCTATAAATATATATACATTGGCTTACCATTTTGGTCAATTGTTTCACAAAGTTTTCTTCTCTCACTTTATTTATAGTATATGTGTTTTTTTCACTTAAATCCAAGCTGACATATATATTTCCCTTCTCTTCGATTCTAGCTATCGTTTATTGAGGTAAGATATATTTATATTTTGTATATTCTGATACAAGGTTTTCAATATTAACGAAGTATTCGTTAATTTCTTAGGGGTTTTTTTTTTCAATATATTTTTCTTTTTGGAAGTTCTTATGTTTAATTTTGTAAAAGGGAAACATCGATATACTTAGTTACTAATTTGACAAAATTCAGTAACTTTAACTTTAAACTTTATATTTGTGTTTTATCTTCATTTGATAAGTGTATTTTATTTACTATTTTATTTTATTTCAATTTTAGGTGACAACTCTTTTGAGAATATCATTTTTTCATTGACTTGTTGAATATTTATAATAAAAAAGTTGTGATTTTGGACTTTGTAGGAGTAATTTATATGTATTTTTCTTTAATTTTTGTTTAAAATTAAAGCAAATAAAATAATTAAAAATTTATAAGGTTGGATTCTCTCTTCCAAAAAAAAAAACAGGTGAAAGGATCTAGTATAGTACTTATAGATTATCACTAGTTGGTAATTACTTTATCTATTATTAGTTGGAATCTAAGTTTATCATGATTAATTTGAGTTGTAATTGAGTTCTTTAGTTTTTAATTTGAGATGTTGGATTTGAATTTTTTTATATAAATTTTTTTAATTTGCTGCGATTGTTACCTTTAAAAATAAATTTTATAATATATAAATTTAAATTTAATCAAAATCTAATCAAAATCGTACTATTACATTGTGCGGCCATTAATTCACTTTTGTTTGGGTTCACTGAAAATCATAAATTTTATGTGTCTTTTCTTTATTTTGTTCTGTCTATTTGTTCACAGCTGTCTGAGTTCCAATGACATATTTGATAGTACTCCTATTAAAAATAAATTTAATCCACTTTTAAACAAAAATAAATTTTTATTTTATTAAAATGGTGCTACTATTTCTTTGCCTTTTTGTCAAAATGTTACCTTTTTTCGTTTTAAAAGAATGAATTTTTTTTAGTCTGTTTAAAAATTTTTTTTTTAATAATATCATAACTTTGACTTTTCACGTGGCATATTTAACACTACAAGATTAAAGTATATTTTGATATATTTAATATAACTTTAATTTTGAATCATAAAATTAAAAAATCTTCTTTATTTTCTTAAATTTCTTTTTAAGTTAAATTAGATCATTCTTTTTTAAACAAAAATTAATAATTGCTAAGCGGCCATGTGACAATGATGTGAAACTTTTAAGAGTTAGATTCAAAGTACTGCTTTTATAATTTGACCTTGGTTCTTTTTTCTATCCAATATTCATACATGGACCTTTTTTTCCCCTACTTTTGCTCTTTATTTTATTAGTAGTAGATTAATCTCCCCGTAATAACTAGTCTTAATCAAGTTGTTTATTTTATTTTTTAAGGGAAAATGACACCAAAATACTACTAAACTATATATTTATACAAAAGTAGTTATGTTGGGGTGTATTAGGTAAAAAATAATATTTAATTAATTTAAAATATTGAAAGATGATTTTTTTAGTGAAAATAAAAAAATAAGTTTCATAAATTACATACAGTACACTTCATCTTTACTATCCTCCTCCACCGGACCCCCTCCCCAACACCTTCCATCCCACTCAAAAGAACAAGTCAAAACAAAAACTTACTTGAAAATAATTTTGATAGAAAATATATTTTTCTTCGTACTGAATACACATATTATCCTTTTGCTTTATGGCTGAAAAAAGTTACCCTTCTTATCAACGAAGTGATGTAGATATGTCAAATAATAAATAAAGAAAATAATTGTGCTATTTTCAATAGTTTAAAGACATATATTCTCTGTATCACTAAATGATAAAGAATAATGTTACTAAATTGCTCTATTTTCAATAATTCAAAAGTATTTTCTATATTTTTTTCTTTTTAAAATTGTGAAATCATATTAGATAGGTAACTAATAAATTTTTCTTTTTATATTTAAAAAAATGTATTAAATAATTATTTATGAATAGAAAATAACTTTAAATCTTGATTCCGTCAATACAGGAAGAATATAAATGAAGATGGTGGAGGAAAGGGAGAATAAGCTTGATCCACAACAAGTGATTGATGAATTTGAGCTATTAAGCAAAGATGCTGGGAAAATTCAAGAAAAGACCTTACAAAAGATTCTTGAAGAAAATGGAAGGACAGAATATTTGCAACAATGGGGTCTTAATGGGAAAACAGATCAAGTTTCTTTCAA</genome_strand>
        <mrna_strand>TAATTCCCATTTAAAGGGGAAAAATATTCTCAAAATTTTTCTGTTCACAACAGTGCATTTCTGCCTTAAACTATACCCCAATGATTTGAATTCGAATTTTTTTATCTGATTTTATAATTAATTTTAAATATAAATATAAATATATAAATAATATATCAAAATTCATATTTACAATTATAATAAATTTTAAATTCTAAATTCGATGATTGGCCCACAGTGGAACAATGTTAGCTCTAAATCATGCCATCTATAAATATATATACATTGGCTTACCATTTTGCTCAATTGTTTCACAAAGTTTTCTTCTCTCACTTTATTTATAGTATATGTGTTTTTTTCACTTAAATCCAAGCTGACATATATATTTCCCTTCTCTTCGATTCTAGCTATCATTTATCGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAATATAAATGAAGATGGTGGAGGAAAGGGAGAATAAGTTTGATCCACAACAAGTGATTGATGAATTTGAGATATTAAGCAAAGATGCTGGGAAAATTCAAGAAGAGACCTTACAAAAGATTCTTGAAGAAAATGGAAGGACAGAATATTTGCAACAATGGGGTCTTAATGGGAAAACAGATCAAGTTTCTTTCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E329896" ref_strand="+" ref_description="SGN-E329896 [cTOD-5-A23]">
      <seq>taattcccatttaaaggggaaaaatattctcaaaatttttctgttcacaacactgcatttctgccttaaactataccccaatgatttgaattcgaatttttttatctgattttataattaattttaaatataaatataaatatataaataatatatcaaaattcatatttacaattataataaattttaaattctaaattcgatgattggcccacagtggaacaatgttagctctaaatcatgccatctataaatatatatacattggcttaccattttgctcaattgtttcacaaagttttcttctctcactttatttatagtatatgtgtttttttcacttaaatccaagctgacatatatatttcccttctcttcgattctagctatcatttatcgaggaagaatataaatgaagatggtggaggaaagggagaataagtttgatccacaacaagtgattgatgaatttgagatattaagcaaagatgctgggaaaattcaagaagagaccttacaaaagattcttgaagaaaatggaaggacagaatatttgcaacaatggggtcttaatgggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="127029" stop="130201"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127329" g_stop="127723" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127724" i_stop="129722" i_length="1999">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129723" g_stop="129901" g_length="179"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="580" r_length="179" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E329896" ref_strand="+">
        <total_alignment_score>0.969</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.990" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E329896" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127329" e_stop="127723"/>
          <exon e_start="129723" e_stop="129901"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTCCCATTTAAAGGGGAAAAATATTCTCAAAATTTTTCTGTTCACAACACTGCATTTCTGCCTTAAACTATACCCCAATGATTTGAATTCGAATTTTTTTATCTGATTTTATAATTAA--TT---T-TAAATATAAATATATAAATAATATATCAAAATTCATATTTACAATTATAATAAATTTTAAATTCTAAATTCGATGATTGGCCCACAGTGGAACAATGTTAGCTCTAAATCATGCCATCTATAAATATATATACATTGGCTTACCATTTTGGTCAATTGTTTCACAAAGTTTTCTTCTCTCACTTTATTTATAGTATATGTGTTTTTTTCACTTAAATCCAAGCTGACATATATATTTCCCTTCTCTTCGATTCTAGCTATCGTTTATTGAGGTAAGATATATTTATATTTTGTATATTCTGATACAAGGTTTTCAATATTAACGAAGTATTCGTTAATTTCTTAGGGGTTTTTTTTTTCAATATATTTTTCTTTTTGGAAGTTCTTATGTTTAATTTTGTAAAAGGGAAACATCGATATACTTAGTTACTAATTTGACAAAATTCAGTAACTTTAACTTTAAACTTTATATTTGTGTTTTATCTTCATTTGATAAGTGTATTTTATTTACTATTTTATTTTATTTCAATTTTAGGTGACAACTCTTTTGAGAATATCATTTTTTCATTGACTTGTTGAATATTTATAATAAAAAAGTTGTGATTTTGGACTTTGTAGGAGTAATTTATATGTATTTTTCTTTAATTTTTGTTTAAAATTAAAGCAAATAAAATAATTAAAAATTTATAAGGTTGGATTCTCTCTTCCAAAAAAAAAAACAGGTGAAAGGATCTAGTATAGTACTTATAGATTATCACTAGTTGGTAATTACTTTATCTATTATTAGTTGGAATCTAAGTTTATCATGATTAATTTGAGTTGTAATTGAGTTCTTTAGTTTTTAATTTGAGATGTTGGATTTGAATTTTTTTATATAAATTTTTTTAATTTGCTGCGATTGTTACCTTTAAAAATAAATTTTATAATATATAAATTTAAATTTAATCAAAATCTAATCAAAATCGTACTATTACATTGTGCGGCCATTAATTCACTTTTGTTTGGGTTCACTGAAAATCATAAATTTTATGTGTCTTTTCTTTATTTTGTTCTGTCTATTTGTTCACAGCTGTCTGAGTTCCAATGACATATTTGATAGTACTCCTATTAAAAATAAATTTAATCCACTTTTAAACAAAAATAAATTTTTATTTTATTAAAATGGTGCTACTATTTCTTTGCCTTTTTGTCAAAATGTTACCTTTTTTCGTTTTAAAAGAATGAATTTTTTTTAGTCTGTTTAAAAATTTTTTTTTTAATAATATCATAACTTTGACTTTTCACGTGGCATATTTAACACTACAAGATTAAAGTATATTTTGATATATTTAATATAACTTTAATTTTGAATCATAAAATTAAAAAATCTTCTTTATTTTCTTAAATTTCTTTTTAAGTTAAATTAGATCATTCTTTTTTAAACAAAAATTAATAATTGCTAAGCGGCCATGTGACAATGATGTGAAACTTTTAAGAGTTAGATTCAAAGTACTGCTTTTATAATTTGACCTTGGTTCTTTTTTCTATCCAATATTCATACATGGACCTTTTTTTCCCCTACTTTTGCTCTTTATTTTATTAGTAGTAGATTAATCTCCCCGTAATAACTAGTCTTAATCAAGTTGTTTATTTTATTTTTTAAGGGAAAATGACACCAAAATACTACTAAACTATATATTTATACAAAAGTAGTTATGTTGGGGTGTATTAGGTAAAAAATAATATTTAATTAATTTAAAATATTGAAAGATGATTTTTTTAGTGAAAATAAAAAAATAAGTTTCATAAATTACATACAGTACACTTCATCTTTACTATCCTCCTCCACCGGACCCCCTCCCCAACACCTTCCATCCCACTCAAAAGAACAAGTCAAAACAAAAACTTACTTGAAAATAATTTTGATAGAAAATATATTTTTCTTCGTACTGAATACACATATTATCCTTTTGCTTTATGGCTGAAAAAAGTTACCCTTCTTATCAACGAAGTGATGTAGATATGTCAAATAATAAATAAAGAAAATAATTGTGCTATTTTCAATAGTTTAAAGACATATATTCTCTGTATCACTAAATGATAAAGAATAATGTTACTAAATTGCTCTATTTTCAATAATTCAAAAGTATTTTCTATATTTTTTTCTTTTTAAAATTGTGAAATCATATTAGATAGGTAACTAATAAATTTTTCTTTTTATATTTAAAAAAATGTATTAAATAATTATTTATGAATAGAAAATAACTTTAAATCTTGATTCCGTCAATACAGGAAGAATATAAATGAAGATGGTGGAGGAAAGGGAGAATAAGCTTGATCCACAACAAGTGATTGATGAATTTGAGCTATTAAGCAAAGATGCTGGGAAAATTCAAGAAAAGACCTTACAAAAGATTCTTGAAGAAAATGGAAGGACAGAATATTTGCAACAATGGGGTCTTAATGGGAAA</genome_strand>
        <mrna_strand>TAATTCCCATTTAAAGGGGAAAAATATTCTCAAAATTTTTCTGTTCACAACACTGCATTTCTGCCTTAAACTATACCCCAATGATTTGAATTCGAATTTTTTTATCTGATTTTATAATTAATTTTAAATATAAATATAAATATATAAATAATATATCAAAATTCATATTTACAATTATAATAAATTTTAAATTCTAAATTCGATGATTGGCCCACAGTGGAACAATGTTAGCTCTAAATCATGCCATCTATAAATATATATACATTGGCTTACCATTTTGCTCAATTGTTTCACAAAGTTTTCTTCTCTCACTTTATTTATAGTATATGTGTTTTTTTCACTTAAATCCAAGCTGACATATATATTTCCCTTCTCTTCGATTCTAGCTATCATTTATCGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAATATAAATGAAGATGGTGGAGGAAAGGGAGAATAAGTTTGATCCACAACAAGTGATTGATGAATTTGAGATATTAAGCAAAGATGCTGGGAAAATTCAAGAAGAGACCTTACAAAAGATTCTTGAAGAAAATGGAAGGACAGAATATTTGCAACAATGGGGTCTTAATGGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E330069" ref_strand="+" ref_description="SGN-E330069 [cTOD-5-A22]">
      <seq>taattcccatttaaaggggaaaaatattctcaaaatttttctgttcacaacactgcatttctgccttaaactataccccaatgatttgaattcgaatttttttatctgattttataattaattttaaatataaatataaatatataaataatatatcaaaattcatatttacaattataataaattttaaattctaaattcgatgattggcccacagtggaacaatgttagctctaaatcatgccatctataaatatatatacattggcttaccattttgctcaattgtttcacaaagttttcttctctcactttatttatagtatatgtgtttttttcacttaaatccaagctgacatatatatttcccttctcttcgattctagctatcatttatcgaggaagaatataaatgaagatggtggaggaaagggagaataagtttgatccacaacaagtgattgatgaatttgagatattaagcaaagatgctgggaaaattcaagaagagaccttacaaaagattcttgaagaaaatggaaggacagaatatttgcaacaatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="127029" stop="130187"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127329" g_stop="127723" g_length="395"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="401" r_length="401" r_score="0.962"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127724" i_stop="129722" i_length="1999">
            <donor d_prob="0.985" d_score="0.96"/>
            <acceptor a_prob="0.998" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129723" g_stop="129887" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="566" r_length="165" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E330069" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>560</cumulative_length_of_scored_exons>
        <coverage percentage="0.989" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E330069" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127329" e_stop="127723"/>
          <exon e_start="129723" e_stop="129887"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAATTCCCATTTAAAGGGGAAAAATATTCTCAAAATTTTTCTGTTCACAACACTGCATTTCTGCCTTAAACTATACCCCAATGATTTGAATTCGAATTTTTTTATCTGATTTTATAATTAA--TT---T-TAAATATAAATATATAAATAATATATCAAAATTCATATTTACAATTATAATAAATTTTAAATTCTAAATTCGATGATTGGCCCACAGTGGAACAATGTTAGCTCTAAATCATGCCATCTATAAATATATATACATTGGCTTACCATTTTGGTCAATTGTTTCACAAAGTTTTCTTCTCTCACTTTATTTATAGTATATGTGTTTTTTTCACTTAAATCCAAGCTGACATATATATTTCCCTTCTCTTCGATTCTAGCTATCGTTTATTGAGGTAAGATATATTTATATTTTGTATATTCTGATACAAGGTTTTCAATATTAACGAAGTATTCGTTAATTTCTTAGGGGTTTTTTTTTTCAATATATTTTTCTTTTTGGAAGTTCTTATGTTTAATTTTGTAAAAGGGAAACATCGATATACTTAGTTACTAATTTGACAAAATTCAGTAACTTTAACTTTAAACTTTATATTTGTGTTTTATCTTCATTTGATAAGTGTATTTTATTTACTATTTTATTTTATTTCAATTTTAGGTGACAACTCTTTTGAGAATATCATTTTTTCATTGACTTGTTGAATATTTATAATAAAAAAGTTGTGATTTTGGACTTTGTAGGAGTAATTTATATGTATTTTTCTTTAATTTTTGTTTAAAATTAAAGCAAATAAAATAATTAAAAATTTATAAGGTTGGATTCTCTCTTCCAAAAAAAAAAACAGGTGAAAGGATCTAGTATAGTACTTATAGATTATCACTAGTTGGTAATTACTTTATCTATTATTAGTTGGAATCTAAGTTTATCATGATTAATTTGAGTTGTAATTGAGTTCTTTAGTTTTTAATTTGAGATGTTGGATTTGAATTTTTTTATATAAATTTTTTTAATTTGCTGCGATTGTTACCTTTAAAAATAAATTTTATAATATATAAATTTAAATTTAATCAAAATCTAATCAAAATCGTACTATTACATTGTGCGGCCATTAATTCACTTTTGTTTGGGTTCACTGAAAATCATAAATTTTATGTGTCTTTTCTTTATTTTGTTCTGTCTATTTGTTCACAGCTGTCTGAGTTCCAATGACATATTTGATAGTACTCCTATTAAAAATAAATTTAATCCACTTTTAAACAAAAATAAATTTTTATTTTATTAAAATGGTGCTACTATTTCTTTGCCTTTTTGTCAAAATGTTACCTTTTTTCGTTTTAAAAGAATGAATTTTTTTTAGTCTGTTTAAAAATTTTTTTTTTAATAATATCATAACTTTGACTTTTCACGTGGCATATTTAACACTACAAGATTAAAGTATATTTTGATATATTTAATATAACTTTAATTTTGAATCATAAAATTAAAAAATCTTCTTTATTTTCTTAAATTTCTTTTTAAGTTAAATTAGATCATTCTTTTTTAAACAAAAATTAATAATTGCTAAGCGGCCATGTGACAATGATGTGAAACTTTTAAGAGTTAGATTCAAAGTACTGCTTTTATAATTTGACCTTGGTTCTTTTTTCTATCCAATATTCATACATGGACCTTTTTTTCCCCTACTTTTGCTCTTTATTTTATTAGTAGTAGATTAATCTCCCCGTAATAACTAGTCTTAATCAAGTTGTTTATTTTATTTTTTAAGGGAAAATGACACCAAAATACTACTAAACTATATATTTATACAAAAGTAGTTATGTTGGGGTGTATTAGGTAAAAAATAATATTTAATTAATTTAAAATATTGAAAGATGATTTTTTTAGTGAAAATAAAAAAATAAGTTTCATAAATTACATACAGTACACTTCATCTTTACTATCCTCCTCCACCGGACCCCCTCCCCAACACCTTCCATCCCACTCAAAAGAACAAGTCAAAACAAAAACTTACTTGAAAATAATTTTGATAGAAAATATATTTTTCTTCGTACTGAATACACATATTATCCTTTTGCTTTATGGCTGAAAAAAGTTACCCTTCTTATCAACGAAGTGATGTAGATATGTCAAATAATAAATAAAGAAAATAATTGTGCTATTTTCAATAGTTTAAAGACATATATTCTCTGTATCACTAAATGATAAAGAATAATGTTACTAAATTGCTCTATTTTCAATAATTCAAAAGTATTTTCTATATTTTTTTCTTTTTAAAATTGTGAAATCATATTAGATAGGTAACTAATAAATTTTTCTTTTTATATTTAAAAAAATGTATTAAATAATTATTTATGAATAGAAAATAACTTTAAATCTTGATTCCGTCAATACAGGAAGAATATAAATGAAGATGGTGGAGGAAAGGGAGAATAAGCTTGATCCACAACAAGTGATTGATGAATTTGAGCTATTAAGCAAAGATGCTGGGAAAATTCAAGAAAAGACCTTACAAAAGATTCTTGAAGAAAATGGAAGGACAGAATATTTGCAACAATGGG</genome_strand>
        <mrna_strand>TAATTCCCATTTAAAGGGGAAAAATATTCTCAAAATTTTTCTGTTCACAACACTGCATTTCTGCCTTAAACTATACCCCAATGATTTGAATTCGAATTTTTTTATCTGATTTTATAATTAATTTTAAATATAAATATAAATATATAAATAATATATCAAAATTCATATTTACAATTATAATAAATTTTAAATTCTAAATTCGATGATTGGCCCACAGTGGAACAATGTTAGCTCTAAATCATGCCATCTATAAATATATATACATTGGCTTACCATTTTGCTCAATTGTTTCACAAAGTTTTCTTCTCTCACTTTATTTATAGTATATGTGTTTTTTTCACTTAAATCCAAGCTGACATATATATTTCCCTTCTCTTCGATTCTAGCTATCATTTATCGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAATATAAATGAAGATGGTGGAGGAAAGGGAGAATAAGTTTGATCCACAACAAGTGATTGATGAATTTGAGATATTAAGCAAAGATGCTGGGAAAATTCAAGAAGAGACCTTACAAAAGATTCTTGAAGAAAATGGAAGGACAGAATATTTGCAACAATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E406966" ref_strand="+" ref_description="SGN-E406966 [PPI-5-H17]">
      <seq>cttctctctcataatttatggtatgtgttttttacactgaaatccaagctaacatatatttcccttctcttcgattctagctatcgtttatcaaggaaaaagataaatgaagatggtggaggaaagtgagaataagtttgatccacaacaagtgatcgatgaatttgagctattaagcaaagatgctgggagaattcaagaagagaccttacaaaagattcttgaagaaaatggagggacagaatatttacaacaatggggtcttaatggtaaaacagatcaagtttctttcaagaattgtgttcctcttgttacacataaggatttggagccttacattcatagaattgttgatggtgatcttactcctattcttactagaaaatctattaccactatctcgttgagaagttgaagaagaaaacttgatgataatggttgattgcagctctggtacaactcaaggaaaaccaaaatttgtacctttcaatgaagaattgatggaatccaccatgcaaatattcaagacttcttttgcctttaggaacagagaattcccagttgtaaacgggaaagcattacagttcatttatggaagcaagcagttcaagacgaaaggaggtttagcagctggaacagccacaacaaatgtgtatcgaaattcgcaattcaagaagacaatgaaagcaatgcagaccccgtgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="127348" stop="134006"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127625" g_stop="127723" g_length="99"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.869"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127724" i_stop="129722" i_length="1999">
            <donor d_prob="0.985" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129723" g_stop="130035" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="408" r_length="313" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130036" i_stop="131704" i_length="1669">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.000" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131705" g_stop="131849" g_length="145"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="550" r_length="142" r_score="0.938"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131850" i_stop="133551" i_length="1702">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="133552" g_stop="133706" g_length="155"/>
          <reference_exon_boundary r_type="cDNA" r_start="551" r_stop="705" r_length="155" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E406966" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>712</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E406966" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127625" e_stop="127723"/>
          <exon e_start="129723" e_stop="130035"/>
          <exon e_start="131705" e_stop="131849"/>
          <exon e_start="133552" e_stop="133706"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCTCTCACTTTATTTATAGTATATGTGTTTTTTTCACTTAAATCCAAGCTGACATATATATTTCCCTTCTCTTCGATTCTAGCTATCGTTTATTGAGGTAAGATATATTTATATTTTGTATATTCTGATACAAGGTTTTCAATATTAACGAAGTATTCGTTAATTTCTTAGGGGTTTTTTTTTTCAATATATTTTTCTTTTTGGAAGTTCTTATGTTTAATTTTGTAAAAGGGAAACATCGATATACTTAGTTACTAATTTGACAAAATTCAGTAACTTTAACTTTAAACTTTATATTTGTGTTTTATCTTCATTTGATAAGTGTATTTTATTTACTATTTTATTTTATTTCAATTTTAGGTGACAACTCTTTTGAGAATATCATTTTTTCATTGACTTGTTGAATATTTATAATAAAAAAGTTGTGATTTTGGACTTTGTAGGAGTAATTTATATGTATTTTTCTTTAATTTTTGTTTAAAATTAAAGCAAATAAAATAATTAAAAATTTATAAGGTTGGATTCTCTCTTCCAAAAAAAAAAACAGGTGAAAGGATCTAGTATAGTACTTATAGATTATCACTAGTTGGTAATTACTTTATCTATTATTAGTTGGAATCTAAGTTTATCATGATTAATTTGAGTTGTAATTGAGTTCTTTAGTTTTTAATTTGAGATGTTGGATTTGAATTTTTTTATATAAATTTTTTTAATTTGCTGCGATTGTTACCTTTAAAAATAAATTTTATAATATATAAATTTAAATTTAATCAAAATCTAATCAAAATCGTACTATTACATTGTGCGGCCATTAATTCACTTTTGTTTGGGTTCACTGAAAATCATAAATTTTATGTGTCTTTTCTTTATTTTGTTCTGTCTATTTGTTCACAGCTGTCTGAGTTCCAATGACATATTTGATAGTACTCCTATTAAAAATAAATTTAATCCACTTTTAAACAAAAATAAATTTTTATTTTATTAAAATGGTGCTACTATTTCTTTGCCTTTTTGTCAAAATGTTACCTTTTTTCGTTTTAAAAGAATGAATTTTTTTTAGTCTGTTTAAAAATTTTTTTTTTAATAATATCATAACTTTGACTTTTCACGTGGCATATTTAACACTACAAGATTAAAGTATATTTTGATATATTTAATATAACTTTAATTTTGAATCATAAAATTAAAAAATCTTCTTTATTTTCTTAAATTTCTTTTTAAGTTAAATTAGATCATTCTTTTTTAAACAAAAATTAATAATTGCTAAGCGGCCATGTGACAATGATGTGAAACTTTTAAGAGTTAGATTCAAAGTACTGCTTTTATAATTTGACCTTGGTTCTTTTTTCTATCCAATATTCATACATGGACCTTTTTTTCCCCTACTTTTGCTCTTTATTTTATTAGTAGTAGATTAATCTCCCCGTAATAACTAGTCTTAATCAAGTTGTTTATTTTATTTTTTAAGGGAAAATGACACCAAAATACTACTAAACTATATATTTATACAAAAGTAGTTATGTTGGGGTGTATTAGGTAAAAAATAATATTTAATTAATTTAAAATATTGAAAGATGATTTTTTTAGTGAAAATAAAAAAATAAGTTTCATAAATTACATACAGTACACTTCATCTTTACTATCCTCCTCCACCGGACCCCCTCCCCAACACCTTCCATCCCACTCAAAAGAACAAGTCAAAACAAAAACTTACTTGAAAATAATTTTGATAGAAAATATATTTTTCTTCGTACTGAATACACATATTATCCTTTTGCTTTATGGCTGAAAAAAGTTACCCTTCTTATCAACGAAGTGATGTAGATATGTCAAATAATAAATAAAGAAAATAATTGTGCTATTTTCAATAGTTTAAAGACATATATTCTCTGTATCACTAAATGATAAAGAATAATGTTACTAAATTGCTCTATTTTCAATAATTCAAAAGTATTTTCTATATTTTTTTCTTTTTAAAATTGTGAAATCATATTAGATAGGTAACTAATAAATTTTTCTTTTTATATTTAAAAAAATGTATTAAATAATTATTTATGAATAGAAAATAACTTTAAATCTTGATTCCGTCAATACAGGAAGAATATAAATGAAGATGGTGGAGGAAAGGGAGAATAAGCTTGATCCACAACAAGTGATTGATGAATTTGAGCTATTAAGCAAAGATGCTGGGAAAATTCAAGAAAAGACCTTACAAAAGATTCTTGAAGAAAATGGAAGGACAGAATATTTGCAACAATGGGGTCTTAATGGGAAAACAGATCAAGTTTCTTTCAAGAATTGTGTTCCTCTTGTTACACATAAGGATTTGGAGCCTTACATTTGTAGAATTGTTGATGGTGATCTTACTCCTATTCTCACTAGAAAGCCTATTACTACCATCTCGTTGAGGTAATATTTTACAATTCGCATATAATTATATTCATGTATATGTTATTTTATAGTCTAAATTTATTGGTAGCTTTCTAAAGTTGGTACTAATTTTCACTTAAACATATTAACTAAATTTAATTTATTTTAGATCCCTTATGTTGAGTCTTGCTGTGTCATTTCGACACACTCTACTGACTTGCTTCATTGAGTTGTTGCACTTACTTTAAGCGCGTGAGTGAGGAGTGTTTTTTTTTTAAAAAAAATTTCCCTTCTTCTTCACTCTTCATTCCTACCACTTATTTTACCTTCCATCATGAAAAATCATGATAAATAACCTTATAAAATATGAAATAATAAAATAAAAAAATTATCACACTATTTTTAAAAATATTTACAAGAAAAAAATTTAAAACAATCATCACACTAAATTTGAAAACATTTATTAGAACAAAAGATACTCTTTTTTTCAAAAAAGAAAAATATAAGACCAATGTCATATTTGTTAGAACCTCACCTCACTATCGATAAAATAACTCTCAAAATCAAATTTACAATGAGAAAAGAAAAAAAGAAAGACTAAAATCTAATGATTTTTTTTAAAAAAATGAAAGAATAACCAAAAAATTGATGAGGAGGTTAAGGGAGACAAAAAGGATGGAAGTAAGGCCGATGGAATGGGGTGGGTGATGTAAGGAAGAGATGTGAGTGGTAGAAAATAGTAATGTGATTTAGTTTTTTTTAATAATTTATTCTAAAATTATTATTTTTCCAATAAAATGACACATGTTAACTTTTAATTAGTCATCATGTTATGTCATTAGCAAGTGATTACAAATACTTTGTAATTTTAGTTGATTATTAAAAAAGAATCAAAATGAACATAACAAGAATCCTACTTGAAGTATTTAAAATGAATAAAGCCTACTCAATTTGTTTAAGTAAAAATTAATGTCAATCATCATGAATTTCACTTATTTTATGTATAATAATATAATATATATGCAAATAACATACATTTAAAATATAAAAAGAAATAGAATCGTTCTTTTTCTTTTTTGAATTTTAACAAAAATTAACTCAAATCTTTCATCAAGCCCCCTCGAAATTAATATATAAACTACATTGTTTGTAGTAAACAATCCATCCAAATAAATAACAACTTTCCAAAAGTTAATTTTTGAAATTCTGACTCAAACTTAATTGATAACTAAACATTTTAATTTAAGTTTATTGTTTCCTTCAAAGAGTGTCTTTTAGACATTTAGAATTTTAAAAAATATTAATTACTCCTGCTATTCTAAATTAGTTATCATATTTTTTTAAAAAAAGTCAATTTGACTCACTTTCGAAATTACATTTAGATTAAACAACTCAAATATTTTATATTTACAATTTAGATATGCAATATATATATATTAATCTGATTAGAAAAAAATATTTTACAATACTAATCAGAATTTATACAGATTGATATTTGATAAACGAAATACAACAACTAATATGAGATAGAAGGAATATGTTTGTTCTATCATGACTACTTCAACTTGGGATTGAGGCGTAATTATTTTTCGTCTTCTCTTATATTATGAAGAATAGAAAATTAAAAAAAGAAACATGATTTTTTTTTTCTTCAATTGTTTTTATGGGGCTTAAAAATTGGTATTTATTTTACTACCACTATTTTTAGAAGTTGAAGAACAAAAAGTTTGATGATAATTGTTGAACTGCAGTTCTGGTACAACTCAAGGAAAGCCAAAATTTGTACCTTTCAATGAAGAATTGATGGAATCCACCATGCAAATATTCAAGACTTCTTTTGCCTTTAGGAACAGGTAATATAATATCTTATTTATCTTTCTATGTTTTACACTATACTTTAAAAAAATTATTAATTTTTGGAGGATCGAACATATATCTGTCGGCATTTTGAAGAGTTTAAGCAATATAACTCTTTCTAATATTGGAAAAATGGGAAGTTTTTTATTTTGTTTCTACTTCTTTTTGTTTTTCTCTTAAAGTCATTGCATATCATTTGGTAATTGCCATCTTTTTCAACTCTACAGCCTCTTTTTTTTTTTGGCTAATGGCTTTTGTTTTATTTGTGGAAAAAGTTTAGTCCAATTTAATAACACAAGATGAGTTGTTTAGTTTTTTTTCTATTGGTACCAATAAATGGAAAAACAAAGTTTCTTTTCTTTTAAATAGTCTTTGTTAGAGTTATTGGCTAAAATCATTCCTTAACTATGATTTAAATTTAATTTACATCTTTATATTATCTAACTAAGTAAAAAATATTCTTATACTATACAAAAAAACTGATTGAACCAATAAAAAAATATTAGTTTGGTTTTGTCTTACCACAACGAGAAGATCAAAATTACCTAAAAAGAATAAGGATATGGGTAGAAAATGAATCTTTTTTTATCGGAATTTAAATTTGTTGTGTTGTCAGTTTATATGATTTTTGCATCATCAAGTAAATTGACTTGCAACAATACATAAGTTTTAAAATATTTATACAATAGGTTCCGATGATTAGAAATATTATGTAAAAAAAGTCATTTTAAAAGTATTACGCCCAACTTTTTAGAGATTTTCTTTAATAAAATATTTAGGAGTGTATCTACTATATATACAATGCAATTCATATTTTATACAATGTACGTAAATATTGGAAATTTAGTGAATTTACTTATGAGTTTAGTTAAGAAAATAAAATTAAGAATCACAGTATTTGAAAATTTTTAAGTTAGAGTTGTGTTTGGCCATATTTTTACAAAATTATTTAGAAATTGAATATATTTTGTCTTAATATGATTTAAATCATCAATTTCTTAAAAAAAAAAACTTAGCTTGACTTAACCACGTGTACGTATATTCATTCAACTTGACATATTTTTTGTTGGTGGCTTGAGATTTTTTAAAAAATAGACAGAAGGATGAATCTTGAAACTTTTTGGATAGTTCAGAAATGTTTTTTGTTTACTTATATAACATAAGAATGTATTTTAAGTTTATGTCATACTTCAGGATGATTTCAGTCAAATACTCGTGTTTGTTACTTTTTCTCTTGGTATCAATAAGTTGAACCTTCTAGTACAAGTGTTCAAGTTTCACATGGTGACAAGTGTGGGGACACATCTCACATTCAAACATTCGTTACACTTTACGTGTGTTGTTCAGACTCTTTAGAAATACTTTAAATAAATACATTGTGCTTAGATAATGCGACACTAACCTATTGATATTTTTAAATAGTTCAAGCAACATAACATTTCTATATAAAAAAAAAGACCTTTTGAATCTTTAATATTTTGAGATCCATATAGGCTAAAATCACTAGAAAACTGATTCTTTAACCCCTCTTGCACTCATGTTACGTCCAGCTCCTGGTGGATTAAAAACAGTATGTTGAGAATATAATTAATTAAAAAGATATGCTCTATTCAACAGTTTAAATTTTTAGATGAGATAGTCACACAAACATCAGATAAAGTTATGAAATAAGGGACAATTTATGAATTTAATTTGCAGAGAATTCCCAGTTGTAAATGGGAAAGCATTACAGTTCATTTATGGAAGCAAACAGTTCAAGACGAAGGGAGGTTTAGCAGCTGGAACAGCCACAACAAATGTGTATCGAAATTCGCAATTCAAGAAGACAATGAAAGCAATGCAGACCCCATGTT</genome_strand>
        <mrna_strand>CTTCTCTCTCATAATTTAT-G-GTATGTGTTTTTTACACTGAAATCCAAGCT-A-ACATATATTTCCCTTCTCTTCGATTCTAGCTATCGTTTATCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGATAAATGAAGATGGTGGAGGAAAGTGAGAATAAGTTTGATCCACAACAAGTGATCGATGAATTTGAGCTATTAAGCAAAGATGCTGGGAGAATTCAAGAAGAGACCTTACAAAAGATTCTTGAAGAAAATGGAGGGACAGAATATTTACAACAATGGGGTCTTAATGGTAAAACAGATCAAGTTTCTTTCAAGAATTGTGTTCCTCTTGTTACACATAAGGATTTGGAGCCTTACATTCATAGAATTGTTGATGGTGATCTTACTCCTATTCTTACTAGAAAATCTATTACCACTATCTCGTTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTGAAGAA-GAAAA-CTTGATGATAATGGTTG-ATTGCAGCTCTGGTACAACTCAAGGAAAACCAAAATTTGTACCTTTCAATGAAGAATTGATGGAATCCACCATGCAAATATTCAAGACTTCTTTTGCCTTTAGGAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATTCCCAGTTGTAAACGGGAAAGCATTACAGTTCATTTATGGAAGCAAGCAGTTCAAGACGAAAGGAGGTTTAGCAGCTGGAACAGCCACAACAAATGTGTATCGAAATTCGCAATTCAAGAAGACAATGAAAGCAATGCAGACCCCGTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E467585" ref_strand="+" ref_description="SGN-E467585 [cSTB-49-O24]">
      <seq>atttatggtatgtgttttttacactgaaatccaagctaacatatatttcccttctcttcgattctagctatcgtttatcgagagtaacttcaaatcttgattctgtcagtacacgaagaagataaatgaagatggtggaggaaagtgagaataagtttgatccacaacaagtgatcgatgaatttgagctattaagcaaagatgctgggagaattcaagaagagaccttacaaaagattcttgaagaaaatggaaggacagaatatttgcaacaatggggtcttaatgggaaaacagatcaagtttctttcaagaattgtgttcctcttgttacacataaggatttggagccttacattcatagaattgttgatggtgatcttactcctattcttactagaaaatctattaccactatctcgttgagctctggaacaactcaaggaaaaccaaaatttgtacctttcaatgaagaattgatggaatccaccatgcaaatattcaagacttcttttgcctttaggaacagagaattcccagtcgtaaatgggaaagcattacagttcatttatggaagcaaacagtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="127348" stop="133908"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127638" g_stop="127723" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="82" r_length="82" r_score="0.895"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127724" i_stop="129688" i_length="1965">
            <donor d_prob="0.985" d_score="0.92"/>
            <acceptor a_prob="0.165" a_score="0.84"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129689" g_stop="130035" g_length="347"/>
          <reference_exon_boundary r_type="cDNA" r_start="83" r_stop="427" r_length="345" r_score="0.942"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130036" i_stop="131747" i_length="1712">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.977" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131748" g_stop="131849" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="529" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131850" i_stop="133551" i_length="1702">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="133552" g_stop="133608" g_length="57"/>
          <reference_exon_boundary r_type="cDNA" r_start="530" r_stop="586" r_length="57" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E467585" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E467585" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127638" e_stop="127723"/>
          <exon e_start="129689" e_stop="130035"/>
          <exon e_start="131748" e_stop="131849"/>
          <exon e_start="133552" e_stop="133608"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTATAGTATATGTGTTTTTTTCACTTAAATCCAAGCTGACATATATATTTCCCTTCTCTTCGATTCTAGCTATCGTTTATTGAGGTAAGATATATTTATATTTTGTATATTCTGATACAAGGTTTTCAATATTAACGAAGTATTCGTTAATTTCTTAGGGGTTTTTTTTTTCAATATATTTTTCTTTTTGGAAGTTCTTATGTTTAATTTTGTAAAAGGGAAACATCGATATACTTAGTTACTAATTTGACAAAATTCAGTAACTTTAACTTTAAACTTTATATTTGTGTTTTATCTTCATTTGATAAGTGTATTTTATTTACTATTTTATTTTATTTCAATTTTAGGTGACAACTCTTTTGAGAATATCATTTTTTCATTGACTTGTTGAATATTTATAATAAAAAAGTTGTGATTTTGGACTTTGTAGGAGTAATTTATATGTATTTTTCTTTAATTTTTGTTTAAAATTAAAGCAAATAAAATAATTAAAAATTTATAAGGTTGGATTCTCTCTTCCAAAAAAAAAAACAGGTGAAAGGATCTAGTATAGTACTTATAGATTATCACTAGTTGGTAATTACTTTATCTATTATTAGTTGGAATCTAAGTTTATCATGATTAATTTGAGTTGTAATTGAGTTCTTTAGTTTTTAATTTGAGATGTTGGATTTGAATTTTTTTATATAAATTTTTTTAATTTGCTGCGATTGTTACCTTTAAAAATAAATTTTATAATATATAAATTTAAATTTAATCAAAATCTAATCAAAATCGTACTATTACATTGTGCGGCCATTAATTCACTTTTGTTTGGGTTCACTGAAAATCATAAATTTTATGTGTCTTTTCTTTATTTTGTTCTGTCTATTTGTTCACAGCTGTCTGAGTTCCAATGACATATTTGATAGTACTCCTATTAAAAATAAATTTAATCCACTTTTAAACAAAAATAAATTTTTATTTTATTAAAATGGTGCTACTATTTCTTTGCCTTTTTGTCAAAATGTTACCTTTTTTCGTTTTAAAAGAATGAATTTTTTTTAGTCTGTTTAAAAATTTTTTTTTTAATAATATCATAACTTTGACTTTTCACGTGGCATATTTAACACTACAAGATTAAAGTATATTTTGATATATTTAATATAACTTTAATTTTGAATCATAAAATTAAAAAATCTTCTTTATTTTCTTAAATTTCTTTTTAAGTTAAATTAGATCATTCTTTTTTAAACAAAAATTAATAATTGCTAAGCGGCCATGTGACAATGATGTGAAACTTTTAAGAGTTAGATTCAAAGTACTGCTTTTATAATTTGACCTTGGTTCTTTTTTCTATCCAATATTCATACATGGACCTTTTTTTCCCCTACTTTTGCTCTTTATTTTATTAGTAGTAGATTAATCTCCCCGTAATAACTAGTCTTAATCAAGTTGTTTATTTTATTTTTTAAGGGAAAATGACACCAAAATACTACTAAACTATATATTTATACAAAAGTAGTTATGTTGGGGTGTATTAGGTAAAAAATAATATTTAATTAATTTAAAATATTGAAAGATGATTTTTTTAGTGAAAATAAAAAAATAAGTTTCATAAATTACATACAGTACACTTCATCTTTACTATCCTCCTCCACCGGACCCCCTCCCCAACACCTTCCATCCCACTCAAAAGAACAAGTCAAAACAAAAACTTACTTGAAAATAATTTTGATAGAAAATATATTTTTCTTCGTACTGAATACACATATTATCCTTTTGCTTTATGGCTGAAAAAAGTTACCCTTCTTATCAACGAAGTGATGTAGATATGTCAAATAATAAATAAAGAAAATAATTGTGCTATTTTCAATAGTTTAAAGACATATATTCTCTGTATCACTAAATGATAAAGAATAATGTTACTAAATTGCTCTATTTTCAATAATTCAAAAGTATTTTCTATATTTTTTTCTTTTTAAAATTGTGAAATCATATTAGATAGGTAACTAATAAATTTTTCTTTTTATATTTAAAAAAATGTATTAAATAATTATTTATGAATAGAAAATAACTTTAAATCTTGATTCCGTCAATACAGGAAGAATATAAATGAAGATGGTGGAGGAAAGGGAGAATAAGCTTGATCCACAACAAGTGATTGATGAATTTGAGCTATTAAGCAAAGATGCTGGGAAAATTCAAGAAAAGACCTTACAAAAGATTCTTGAAGAAAATGGAAGGACAGAATATTTGCAACAATGGGGTCTTAATGGGAAAACAGATCAAGTTTCTTTCAAGAATTGTGTTCCTCTTGTTACACATAAGGATTTGGAGCCTTACATTTGTAGAATTGTTGATGGTGATCTTACTCCTATTCTCACTAGAAAGCCTATTACTACCATCTCGTTGAGGTAATATTTTACAATTCGCATATAATTATATTCATGTATATGTTATTTTATAGTCTAAATTTATTGGTAGCTTTCTAAAGTTGGTACTAATTTTCACTTAAACATATTAACTAAATTTAATTTATTTTAGATCCCTTATGTTGAGTCTTGCTGTGTCATTTCGACACACTCTACTGACTTGCTTCATTGAGTTGTTGCACTTACTTTAAGCGCGTGAGTGAGGAGTGTTTTTTTTTTAAAAAAAATTTCCCTTCTTCTTCACTCTTCATTCCTACCACTTATTTTACCTTCCATCATGAAAAATCATGATAAATAACCTTATAAAATATGAAATAATAAAATAAAAAAATTATCACACTATTTTTAAAAATATTTACAAGAAAAAAATTTAAAACAATCATCACACTAAATTTGAAAACATTTATTAGAACAAAAGATACTCTTTTTTTCAAAAAAGAAAAATATAAGACCAATGTCATATTTGTTAGAACCTCACCTCACTATCGATAAAATAACTCTCAAAATCAAATTTACAATGAGAAAAGAAAAAAAGAAAGACTAAAATCTAATGATTTTTTTTAAAAAAATGAAAGAATAACCAAAAAATTGATGAGGAGGTTAAGGGAGACAAAAAGGATGGAAGTAAGGCCGATGGAATGGGGTGGGTGATGTAAGGAAGAGATGTGAGTGGTAGAAAATAGTAATGTGATTTAGTTTTTTTTAATAATTTATTCTAAAATTATTATTTTTCCAATAAAATGACACATGTTAACTTTTAATTAGTCATCATGTTATGTCATTAGCAAGTGATTACAAATACTTTGTAATTTTAGTTGATTATTAAAAAAGAATCAAAATGAACATAACAAGAATCCTACTTGAAGTATTTAAAATGAATAAAGCCTACTCAATTTGTTTAAGTAAAAATTAATGTCAATCATCATGAATTTCACTTATTTTATGTATAATAATATAATATATATGCAAATAACATACATTTAAAATATAAAAAGAAATAGAATCGTTCTTTTTCTTTTTTGAATTTTAACAAAAATTAACTCAAATCTTTCATCAAGCCCCCTCGAAATTAATATATAAACTACATTGTTTGTAGTAAACAATCCATCCAAATAAATAACAACTTTCCAAAAGTTAATTTTTGAAATTCTGACTCAAACTTAATTGATAACTAAACATTTTAATTTAAGTTTATTGTTTCCTTCAAAGAGTGTCTTTTAGACATTTAGAATTTTAAAAAATATTAATTACTCCTGCTATTCTAAATTAGTTATCATATTTTTTTAAAAAAAGTCAATTTGACTCACTTTCGAAATTACATTTAGATTAAACAACTCAAATATTTTATATTTACAATTTAGATATGCAATATATATATATTAATCTGATTAGAAAAAAATATTTTACAATACTAATCAGAATTTATACAGATTGATATTTGATAAACGAAATACAACAACTAATATGAGATAGAAGGAATATGTTTGTTCTATCATGACTACTTCAACTTGGGATTGAGGCGTAATTATTTTTCGTCTTCTCTTATATTATGAAGAATAGAAAATTAAAAAAAGAAACATGATTTTTTTTTTCTTCAATTGTTTTTATGGGGCTTAAAAATTGGTATTTATTTTACTACCACTATTTTTAGAAGTTGAAGAACAAAAAGTTTGATGATAATTGTTGAACTGCAGTTCTGGTACAACTCAAGGAAAGCCAAAATTTGTACCTTTCAATGAAGAATTGATGGAATCCACCATGCAAATATTCAAGACTTCTTTTGCCTTTAGGAACAGGTAATATAATATCTTATTTATCTTTCTATGTTTTACACTATACTTTAAAAAAATTATTAATTTTTGGAGGATCGAACATATATCTGTCGGCATTTTGAAGAGTTTAAGCAATATAACTCTTTCTAATATTGGAAAAATGGGAAGTTTTTTATTTTGTTTCTACTTCTTTTTGTTTTTCTCTTAAAGTCATTGCATATCATTTGGTAATTGCCATCTTTTTCAACTCTACAGCCTCTTTTTTTTTTTGGCTAATGGCTTTTGTTTTATTTGTGGAAAAAGTTTAGTCCAATTTAATAACACAAGATGAGTTGTTTAGTTTTTTTTCTATTGGTACCAATAAATGGAAAAACAAAGTTTCTTTTCTTTTAAATAGTCTTTGTTAGAGTTATTGGCTAAAATCATTCCTTAACTATGATTTAAATTTAATTTACATCTTTATATTATCTAACTAAGTAAAAAATATTCTTATACTATACAAAAAAACTGATTGAACCAATAAAAAAATATTAGTTTGGTTTTGTCTTACCACAACGAGAAGATCAAAATTACCTAAAAAGAATAAGGATATGGGTAGAAAATGAATCTTTTTTTATCGGAATTTAAATTTGTTGTGTTGTCAGTTTATATGATTTTTGCATCATCAAGTAAATTGACTTGCAACAATACATAAGTTTTAAAATATTTATACAATAGGTTCCGATGATTAGAAATATTATGTAAAAAAAGTCATTTTAAAAGTATTACGCCCAACTTTTTAGAGATTTTCTTTAATAAAATATTTAGGAGTGTATCTACTATATATACAATGCAATTCATATTTTATACAATGTACGTAAATATTGGAAATTTAGTGAATTTACTTATGAGTTTAGTTAAGAAAATAAAATTAAGAATCACAGTATTTGAAAATTTTTAAGTTAGAGTTGTGTTTGGCCATATTTTTACAAAATTATTTAGAAATTGAATATATTTTGTCTTAATATGATTTAAATCATCAATTTCTTAAAAAAAAAAACTTAGCTTGACTTAACCACGTGTACGTATATTCATTCAACTTGACATATTTTTTGTTGGTGGCTTGAGATTTTTTAAAAAATAGACAGAAGGATGAATCTTGAAACTTTTTGGATAGTTCAGAAATGTTTTTTGTTTACTTATATAACATAAGAATGTATTTTAAGTTTATGTCATACTTCAGGATGATTTCAGTCAAATACTCGTGTTTGTTACTTTTTCTCTTGGTATCAATAAGTTGAACCTTCTAGTACAAGTGTTCAAGTTTCACATGGTGACAAGTGTGGGGACACATCTCACATTCAAACATTCGTTACACTTTACGTGTGTTGTTCAGACTCTTTAGAAATACTTTAAATAAATACATTGTGCTTAGATAATGCGACACTAACCTATTGATATTTTTAAATAGTTCAAGCAACATAACATTTCTATATAAAAAAAAAGACCTTTTGAATCTTTAATATTTTGAGATCCATATAGGCTAAAATCACTAGAAAACTGATTCTTTAACCCCTCTTGCACTCATGTTACGTCCAGCTCCTGGTGGATTAAAAACAGTATGTTGAGAATATAATTAATTAAAAAGATATGCTCTATTCAACAGTTTAAATTTTTAGATGAGATAGTCACACAAACATCAGATAAAGTTATGAAATAAGGGACAATTTATGAATTTAATTTGCAGAGAATTCCCAGTTGTAAATGGGAAAGCATTACAGTTCATTTATGGAAGCAAACAGTT</genome_strand>
        <mrna_strand>ATTTAT-GG-TATGTGTTTTTTACACTGAAATCCAAGCT-A-ACATATATTTCCCTTCTCTTCGATTCTAGCTATCGTTTATCGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................--AGTAACTTCAAATCTTGATTCTGTCAGTACACGAAGAAGATAAATGAAGATGGTGGAGGAAAGTGAGAATAAGTTTGATCCACAACAAGTGATCGATGAATTTGAGCTATTAAGCAAAGATGCTGGGAGAATTCAAGAAGAGACCTTACAAAAGATTCTTGAAGAAAATGGAAGGACAGAATATTTGCAACAATGGGGTCTTAATGGGAAAACAGATCAAGTTTCTTTCAAGAATTGTGTTCCTCTTGTTACACATAAGGATTTGGAGCCTTACATTCATAGAATTGTTGATGGTGATCTTACTCCTATTCTTACTAGAAAATCTATTACCACTATCTCGTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGAACAACTCAAGGAAAACCAAAATTTGTACCTTTCAATGAAGAATTGATGGAATCCACCATGCAAATATTCAAGACTTCTTTTGCCTTTAGGAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATTCCCAGTCGTAAATGGGAAAGCATTACAGTTCATTTATGGAAGCAAACAGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E599984" ref_strand="+" ref_description="SGN-E599984 [52984]">
      <seq>gtgtttttacactgaaatccaagctaacatatatttcccttctcttcgattctagctatcgtttatcaaggaaaaagataaatgaagatggtggaggaaagtgagaataagtttgatccacaacaagtgatcgatgaatttgagctattaagcaaagatgctgggagaattcaagaagagaccttacaaaagattcttgaagaaaatggagggacagaatatttacaacaatggggtcttaatggtaaaacagatcaagtttctttcaagaattgtgttcctcttgttacacataaggatttggagccttacattcatagaattgttgatggtgatcttactcctattcttactagaaaatctattaccactatctcgttgagctctggtacaactcaaggaaaaccaaaatttgtacctttcaatgaagaattgatggaatccaccatgcaaatattcaagacttcttttgcctttaggaacagagaattcccagttgtaaacgggaaagcattacagttcatttatggaagcaagcagttcaagacgaagggaggtttagcagctggaacagccacaacaaatgtgtatcgaaattcgcaattcaagaagacaatgaaagcaatgcagaccccgtgttgtagccccgatgaagtgatattcggccctgatttcaatcaatccttgtactgtcatctattatgtggtctcattctacgtaacgaagttcaagttgtctcatctacctttgctcatagtattgtccatgcttttagaaaattcgaacaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="127353" stop="134156"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="127651" g_stop="127723" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="70" r_length="70" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="127724" i_stop="129722" i_length="1999">
            <donor d_prob="0.985" d_score="0.90"/>
            <acceptor a_prob="0.998" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="129723" g_stop="130035" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="71" r_stop="383" r_length="313" r_score="0.946"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="130036" i_stop="131747" i_length="1712">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.977" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="131748" g_stop="131849" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="384" r_stop="485" r_length="102" r_score="0.980"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="131850" i_stop="133551" i_length="1702">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="133552" g_stop="133856" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="790" r_length="305" r_score="0.961"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E599984" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>793</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E599984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="127651" e_stop="127723"/>
          <exon e_start="129723" e_stop="130035"/>
          <exon e_start="131748" e_stop="131849"/>
          <exon e_start="133552" e_stop="133856"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTTTTTTCACTTAAATCCAAGCTGACATATATATTTCCCTTCTCTTCGATTCTAGCTATCGTTTATTGAGGTAAGATATATTTATATTTTGTATATTCTGATACAAGGTTTTCAATATTAACGAAGTATTCGTTAATTTCTTAGGGGTTTTTTTTTTCAATATATTTTTCTTTTTGGAAGTTCTTATGTTTAATTTTGTAAAAGGGAAACATCGATATACTTAGTTACTAATTTGACAAAATTCAGTAACTTTAACTTTAAACTTTATATTTGTGTTTTATCTTCATTTGATAAGTGTATTTTATTTACTATTTTATTTTATTTCAATTTTAGGTGACAACTCTTTTGAGAATATCATTTTTTCATTGACTTGTTGAATATTTATAATAAAAAAGTTGTGATTTTGGACTTTGTAGGAGTAATTTATATGTATTTTTCTTTAATTTTTGTTTAAAATTAAAGCAAATAAAATAATTAAAAATTTATAAGGTTGGATTCTCTCTTCCAAAAAAAAAAACAGGTGAAAGGATCTAGTATAGTACTTATAGATTATCACTAGTTGGTAATTACTTTATCTATTATTAGTTGGAATCTAAGTTTATCATGATTAATTTGAGTTGTAATTGAGTTCTTTAGTTTTTAATTTGAGATGTTGGATTTGAATTTTTTTATATAAATTTTTTTAATTTGCTGCGATTGTTACCTTTAAAAATAAATTTTATAATATATAAATTTAAATTTAATCAAAATCTAATCAAAATCGTACTATTACATTGTGCGGCCATTAATTCACTTTTGTTTGGGTTCACTGAAAATCATAAATTTTATGTGTCTTTTCTTTATTTTGTTCTGTCTATTTGTTCACAGCTGTCTGAGTTCCAATGACATATTTGATAGTACTCCTATTAAAAATAAATTTAATCCACTTTTAAACAAAAATAAATTTTTATTTTATTAAAATGGTGCTACTATTTCTTTGCCTTTTTGTCAAAATGTTACCTTTTTTCGTTTTAAAAGAATGAATTTTTTTTAGTCTGTTTAAAAATTTTTTTTTTAATAATATCATAACTTTGACTTTTCACGTGGCATATTTAACACTACAAGATTAAAGTATATTTTGATATATTTAATATAACTTTAATTTTGAATCATAAAATTAAAAAATCTTCTTTATTTTCTTAAATTTCTTTTTAAGTTAAATTAGATCATTCTTTTTTAAACAAAAATTAATAATTGCTAAGCGGCCATGTGACAATGATGTGAAACTTTTAAGAGTTAGATTCAAAGTACTGCTTTTATAATTTGACCTTGGTTCTTTTTTCTATCCAATATTCATACATGGACCTTTTTTTCCCCTACTTTTGCTCTTTATTTTATTAGTAGTAGATTAATCTCCCCGTAATAACTAGTCTTAATCAAGTTGTTTATTTTATTTTTTAAGGGAAAATGACACCAAAATACTACTAAACTATATATTTATACAAAAGTAGTTATGTTGGGGTGTATTAGGTAAAAAATAATATTTAATTAATTTAAAATATTGAAAGATGATTTTTTTAGTGAAAATAAAAAAATAAGTTTCATAAATTACATACAGTACACTTCATCTTTACTATCCTCCTCCACCGGACCCCCTCCCCAACACCTTCCATCCCACTCAAAAGAACAAGTCAAAACAAAAACTTACTTGAAAATAATTTTGATAGAAAATATATTTTTCTTCGTACTGAATACACATATTATCCTTTTGCTTTATGGCTGAAAAAAGTTACCCTTCTTATCAACGAAGTGATGTAGATATGTCAAATAATAAATAAAGAAAATAATTGTGCTATTTTCAATAGTTTAAAGACATATATTCTCTGTATCACTAAATGATAAAGAATAATGTTACTAAATTGCTCTATTTTCAATAATTCAAAAGTATTTTCTATATTTTTTTCTTTTTAAAATTGTGAAATCATATTAGATAGGTAACTAATAAATTTTTCTTTTTATATTTAAAAAAATGTATTAAATAATTATTTATGAATAGAAAATAACTTTAAATCTTGATTCCGTCAATACAGGAAGAATATAAATGAAGATGGTGGAGGAAAGGGAGAATAAGCTTGATCCACAACAAGTGATTGATGAATTTGAGCTATTAAGCAAAGATGCTGGGAAAATTCAAGAAAAGACCTTACAAAAGATTCTTGAAGAAAATGGAAGGACAGAATATTTGCAACAATGGGGTCTTAATGGGAAAACAGATCAAGTTTCTTTCAAGAATTGTGTTCCTCTTGTTACACATAAGGATTTGGAGCCTTACATTTGTAGAATTGTTGATGGTGATCTTACTCCTATTCTCACTAGAAAGCCTATTACTACCATCTCGTTGAGGTAATATTTTACAATTCGCATATAATTATATTCATGTATATGTTATTTTATAGTCTAAATTTATTGGTAGCTTTCTAAAGTTGGTACTAATTTTCACTTAAACATATTAACTAAATTTAATTTATTTTAGATCCCTTATGTTGAGTCTTGCTGTGTCATTTCGACACACTCTACTGACTTGCTTCATTGAGTTGTTGCACTTACTTTAAGCGCGTGAGTGAGGAGTGTTTTTTTTTTAAAAAAAATTTCCCTTCTTCTTCACTCTTCATTCCTACCACTTATTTTACCTTCCATCATGAAAAATCATGATAAATAACCTTATAAAATATGAAATAATAAAATAAAAAAATTATCACACTATTTTTAAAAATATTTACAAGAAAAAAATTTAAAACAATCATCACACTAAATTTGAAAACATTTATTAGAACAAAAGATACTCTTTTTTTCAAAAAAGAAAAATATAAGACCAATGTCATATTTGTTAGAACCTCACCTCACTATCGATAAAATAACTCTCAAAATCAAATTTACAATGAGAAAAGAAAAAAAGAAAGACTAAAATCTAATGATTTTTTTTAAAAAAATGAAAGAATAACCAAAAAATTGATGAGGAGGTTAAGGGAGACAAAAAGGATGGAAGTAAGGCCGATGGAATGGGGTGGGTGATGTAAGGAAGAGATGTGAGTGGTAGAAAATAGTAATGTGATTTAGTTTTTTTTAATAATTTATTCTAAAATTATTATTTTTCCAATAAAATGACACATGTTAACTTTTAATTAGTCATCATGTTATGTCATTAGCAAGTGATTACAAATACTTTGTAATTTTAGTTGATTATTAAAAAAGAATCAAAATGAACATAACAAGAATCCTACTTGAAGTATTTAAAATGAATAAAGCCTACTCAATTTGTTTAAGTAAAAATTAATGTCAATCATCATGAATTTCACTTATTTTATGTATAATAATATAATATATATGCAAATAACATACATTTAAAATATAAAAAGAAATAGAATCGTTCTTTTTCTTTTTTGAATTTTAACAAAAATTAACTCAAATCTTTCATCAAGCCCCCTCGAAATTAATATATAAACTACATTGTTTGTAGTAAACAATCCATCCAAATAAATAACAACTTTCCAAAAGTTAATTTTTGAAATTCTGACTCAAACTTAATTGATAACTAAACATTTTAATTTAAGTTTATTGTTTCCTTCAAAGAGTGTCTTTTAGACATTTAGAATTTTAAAAAATATTAATTACTCCTGCTATTCTAAATTAGTTATCATATTTTTTTAAAAAAAGTCAATTTGACTCACTTTCGAAATTACATTTAGATTAAACAACTCAAATATTTTATATTTACAATTTAGATATGCAATATATATATATTAATCTGATTAGAAAAAAATATTTTACAATACTAATCAGAATTTATACAGATTGATATTTGATAAACGAAATACAACAACTAATATGAGATAGAAGGAATATGTTTGTTCTATCATGACTACTTCAACTTGGGATTGAGGCGTAATTATTTTTCGTCTTCTCTTATATTATGAAGAATAGAAAATTAAAAAAAGAAACATGATTTTTTTTTTCTTCAATTGTTTTTATGGGGCTTAAAAATTGGTATTTATTTTACTACCACTATTTTTAGAAGTTGAAGAACAAAAAGTTTGATGATAATTGTTGAACTGCAGTTCTGGTACAACTCAAGGAAAGCCAAAATTTGTACCTTTCAATGAAGAATTGATGGAATCCACCATGCAAATATTCAAGACTTCTTTTGCCTTTAGGAACAGGTAATATAATATCTTATTTATCTTTCTATGTTTTACACTATACTTTAAAAAAATTATTAATTTTTGGAGGATCGAACATATATCTGTCGGCATTTTGAAGAGTTTAAGCAATATAACTCTTTCTAATATTGGAAAAATGGGAAGTTTTTTATTTTGTTTCTACTTCTTTTTGTTTTTCTCTTAAAGTCATTGCATATCATTTGGTAATTGCCATCTTTTTCAACTCTACAGCCTCTTTTTTTTTTTGGCTAATGGCTTTTGTTTTATTTGTGGAAAAAGTTTAGTCCAATTTAATAACACAAGATGAGTTGTTTAGTTTTTTTTCTATTGGTACCAATAAATGGAAAAACAAAGTTTCTTTTCTTTTAAATAGTCTTTGTTAGAGTTATTGGCTAAAATCATTCCTTAACTATGATTTAAATTTAATTTACATCTTTATATTATCTAACTAAGTAAAAAATATTCTTATACTATACAAAAAAACTGATTGAACCAATAAAAAAATATTAGTTTGGTTTTGTCTTACCACAACGAGAAGATCAAAATTACCTAAAAAGAATAAGGATATGGGTAGAAAATGAATCTTTTTTTATCGGAATTTAAATTTGTTGTGTTGTCAGTTTATATGATTTTTGCATCATCAAGTAAATTGACTTGCAACAATACATAAGTTTTAAAATATTTATACAATAGGTTCCGATGATTAGAAATATTATGTAAAAAAAGTCATTTTAAAAGTATTACGCCCAACTTTTTAGAGATTTTCTTTAATAAAATATTTAGGAGTGTATCTACTATATATACAATGCAATTCATATTTTATACAATGTACGTAAATATTGGAAATTTAGTGAATTTACTTATGAGTTTAGTTAAGAAAATAAAATTAAGAATCACAGTATTTGAAAATTTTTAAGTTAGAGTTGTGTTTGGCCATATTTTTACAAAATTATTTAGAAATTGAATATATTTTGTCTTAATATGATTTAAATCATCAATTTCTTAAAAAAAAAAACTTAGCTTGACTTAACCACGTGTACGTATATTCATTCAACTTGACATATTTTTTGTTGGTGGCTTGAGATTTTTTAAAAAATAGACAGAAGGATGAATCTTGAAACTTTTTGGATAGTTCAGAAATGTTTTTTGTTTACTTATATAACATAAGAATGTATTTTAAGTTTATGTCATACTTCAGGATGATTTCAGTCAAATACTCGTGTTTGTTACTTTTTCTCTTGGTATCAATAAGTTGAACCTTCTAGTACAAGTGTTCAAGTTTCACATGGTGACAAGTGTGGGGACACATCTCACATTCAAACATTCGTTACACTTTACGTGTGTTGTTCAGACTCTTTAGAAATACTTTAAATAAATACATTGTGCTTAGATAATGCGACACTAACCTATTGATATTTTTAAATAGTTCAAGCAACATAACATTTCTATATAAAAAAAAAGACCTTTTGAATCTTTAATATTTTGAGATCCATATAGGCTAAAATCACTAGAAAACTGATTCTTTAACCCCTCTTGCACTCATGTTACGTCCAGCTCCTGGTGGATTAAAAACAGTATGTTGAGAATATAATTAATTAAAAAGATATGCTCTATTCAACAGTTTAAATTTTTAGATGAGATAGTCACACAAACATCAGATAAAGTTATGAAATAAGGGACAATTTATGAATTTAATTTGCAGAGAATTCCCAGTTGTAAATGGGAAAGCATTACAGTTCATTTATGGAAGCAAACAGTTCAAGACGAAGGGAGGTTTAGCAGCTGGAACAGCCACAACAAATGTGTATCGAAATTCGCAATTCAAGAAGACAATGAAAGCAATGCAGACCCCATGTTGTAGCCCTGATGAAGTGATATTCGGCCCTGATTTCCATCAGTCCTTGTACTGTCATCTCCTGTGTGGTCTCATTTTACGTAACGAAGTTCAAGTTGTCTCATCTACATTTGCTCATAGTATTGTCCATGCTTTTAGACAATTCGAACAAG</genome_strand>
        <mrna_strand>GTGT-TTTTACACTGAAATCCAAGCT-A-ACATATATTTCCCTTCTCTTCGATTCTAGCTATCGTTTATCAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGATAAATGAAGATGGTGGAGGAAAGTGAGAATAAGTTTGATCCACAACAAGTGATCGATGAATTTGAGCTATTAAGCAAAGATGCTGGGAGAATTCAAGAAGAGACCTTACAAAAGATTCTTGAAGAAAATGGAGGGACAGAATATTTACAACAATGGGGTCTTAATGGTAAAACAGATCAAGTTTCTTTCAAGAATTGTGTTCCTCTTGTTACACATAAGGATTTGGAGCCTTACATTCATAGAATTGTTGATGGTGATCTTACTCCTATTCTTACTAGAAAATCTATTACCACTATCTCGTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGTACAACTCAAGGAAAACCAAAATTTGTACCTTTCAATGAAGAATTGATGGAATCCACCATGCAAATATTCAAGACTTCTTTTGCCTTTAGGAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATTCCCAGTTGTAAACGGGAAAGCATTACAGTTCATTTATGGAAGCAAGCAGTTCAAGACGAAGGGAGGTTTAGCAGCTGGAACAGCCACAACAAATGTGTATCGAAATTCGCAATTCAAGAAGACAATGAAAGCAATGCAGACCCCGTGTTGTAGCCCCGATGAAGTGATATTCGGCCCTGATTTCAATCAATCCTTGTACTGTCATCTATTATGTGGTCTCATTCTACGTAACGAAGTTCAAGTTGTCTCATCTACCTTTGCTCATAGTATTGTCCATGCTTTTAGAAAATTCGAACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E476023" ref_strand="+" ref_description="SGN-E476023 [cSTB-43-G9]">
      <seq>tcctcttgttacacataaggatttggagccttacattcatagaattgttgatggtgatcttactcctattcttactagaaaatctattaccactatctcgttgagctctggaacaactcaaggaaaaccaaaatttgtacctttcaatgaagaattgatggaatccaccatgcaaatattcaagacttcttttgcctttaggaacagagaattcccagtcgtaaatgggaaagcattacagttcatttatggaagcaaacagttcaagacgaagggaggtttagcagctggaacagccacaacaaatgtataccgaaattcgcaattcaagaagacaatgaaagcaatgcagaccccgtgttgtagccccgatgaagtgatattcggccctgatttcaatcaatccttgtactgtcatctattgtgtggtctcattctacgtaacgaagttcaagttgtctcgtctacatttgctcatagtattgtccatgcttttagaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="129631" stop="134147"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="129931" g_stop="130035" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="130036" i_stop="131747" i_length="1712">
            <donor d_prob="0.999" d_score="0.90"/>
            <acceptor a_prob="0.977" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="131748" g_stop="131849" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="207" r_length="102" r_score="0.971"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="131850" i_stop="133551" i_length="1702">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="133552" g_stop="133847" g_length="296"/>
          <reference_exon_boundary r_type="cDNA" r_start="208" r_stop="503" r_length="296" r_score="0.959"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E476023" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>503</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E476023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="129931" e_stop="130035"/>
          <exon e_start="131748" e_stop="131849"/>
          <exon e_start="133552" e_stop="133847"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTCTTGTTACACATAAGGATTTGGAGCCTTACATTTGTAGAATTGTTGATGGTGATCTTACTCCTATTCTCACTAGAAAGCCTATTACTACCATCTCGTTGAGGTAATATTTTACAATTCGCATATAATTATATTCATGTATATGTTATTTTATAGTCTAAATTTATTGGTAGCTTTCTAAAGTTGGTACTAATTTTCACTTAAACATATTAACTAAATTTAATTTATTTTAGATCCCTTATGTTGAGTCTTGCTGTGTCATTTCGACACACTCTACTGACTTGCTTCATTGAGTTGTTGCACTTACTTTAAGCGCGTGAGTGAGGAGTGTTTTTTTTTTAAAAAAAATTTCCCTTCTTCTTCACTCTTCATTCCTACCACTTATTTTACCTTCCATCATGAAAAATCATGATAAATAACCTTATAAAATATGAAATAATAAAATAAAAAAATTATCACACTATTTTTAAAAATATTTACAAGAAAAAAATTTAAAACAATCATCACACTAAATTTGAAAACATTTATTAGAACAAAAGATACTCTTTTTTTCAAAAAAGAAAAATATAAGACCAATGTCATATTTGTTAGAACCTCACCTCACTATCGATAAAATAACTCTCAAAATCAAATTTACAATGAGAAAAGAAAAAAAGAAAGACTAAAATCTAATGATTTTTTTTAAAAAAATGAAAGAATAACCAAAAAATTGATGAGGAGGTTAAGGGAGACAAAAAGGATGGAAGTAAGGCCGATGGAATGGGGTGGGTGATGTAAGGAAGAGATGTGAGTGGTAGAAAATAGTAATGTGATTTAGTTTTTTTTAATAATTTATTCTAAAATTATTATTTTTCCAATAAAATGACACATGTTAACTTTTAATTAGTCATCATGTTATGTCATTAGCAAGTGATTACAAATACTTTGTAATTTTAGTTGATTATTAAAAAAGAATCAAAATGAACATAACAAGAATCCTACTTGAAGTATTTAAAATGAATAAAGCCTACTCAATTTGTTTAAGTAAAAATTAATGTCAATCATCATGAATTTCACTTATTTTATGTATAATAATATAATATATATGCAAATAACATACATTTAAAATATAAAAAGAAATAGAATCGTTCTTTTTCTTTTTTGAATTTTAACAAAAATTAACTCAAATCTTTCATCAAGCCCCCTCGAAATTAATATATAAACTACATTGTTTGTAGTAAACAATCCATCCAAATAAATAACAACTTTCCAAAAGTTAATTTTTGAAATTCTGACTCAAACTTAATTGATAACTAAACATTTTAATTTAAGTTTATTGTTTCCTTCAAAGAGTGTCTTTTAGACATTTAGAATTTTAAAAAATATTAATTACTCCTGCTATTCTAAATTAGTTATCATATTTTTTTAAAAAAAGTCAATTTGACTCACTTTCGAAATTACATTTAGATTAAACAACTCAAATATTTTATATTTACAATTTAGATATGCAATATATATATATTAATCTGATTAGAAAAAAATATTTTACAATACTAATCAGAATTTATACAGATTGATATTTGATAAACGAAATACAACAACTAATATGAGATAGAAGGAATATGTTTGTTCTATCATGACTACTTCAACTTGGGATTGAGGCGTAATTATTTTTCGTCTTCTCTTATATTATGAAGAATAGAAAATTAAAAAAAGAAACATGATTTTTTTTTTCTTCAATTGTTTTTATGGGGCTTAAAAATTGGTATTTATTTTACTACCACTATTTTTAGAAGTTGAAGAACAAAAAGTTTGATGATAATTGTTGAACTGCAGTTCTGGTACAACTCAAGGAAAGCCAAAATTTGTACCTTTCAATGAAGAATTGATGGAATCCACCATGCAAATATTCAAGACTTCTTTTGCCTTTAGGAACAGGTAATATAATATCTTATTTATCTTTCTATGTTTTACACTATACTTTAAAAAAATTATTAATTTTTGGAGGATCGAACATATATCTGTCGGCATTTTGAAGAGTTTAAGCAATATAACTCTTTCTAATATTGGAAAAATGGGAAGTTTTTTATTTTGTTTCTACTTCTTTTTGTTTTTCTCTTAAAGTCATTGCATATCATTTGGTAATTGCCATCTTTTTCAACTCTACAGCCTCTTTTTTTTTTTGGCTAATGGCTTTTGTTTTATTTGTGGAAAAAGTTTAGTCCAATTTAATAACACAAGATGAGTTGTTTAGTTTTTTTTCTATTGGTACCAATAAATGGAAAAACAAAGTTTCTTTTCTTTTAAATAGTCTTTGTTAGAGTTATTGGCTAAAATCATTCCTTAACTATGATTTAAATTTAATTTACATCTTTATATTATCTAACTAAGTAAAAAATATTCTTATACTATACAAAAAAACTGATTGAACCAATAAAAAAATATTAGTTTGGTTTTGTCTTACCACAACGAGAAGATCAAAATTACCTAAAAAGAATAAGGATATGGGTAGAAAATGAATCTTTTTTTATCGGAATTTAAATTTGTTGTGTTGTCAGTTTATATGATTTTTGCATCATCAAGTAAATTGACTTGCAACAATACATAAGTTTTAAAATATTTATACAATAGGTTCCGATGATTAGAAATATTATGTAAAAAAAGTCATTTTAAAAGTATTACGCCCAACTTTTTAGAGATTTTCTTTAATAAAATATTTAGGAGTGTATCTACTATATATACAATGCAATTCATATTTTATACAATGTACGTAAATATTGGAAATTTAGTGAATTTACTTATGAGTTTAGTTAAGAAAATAAAATTAAGAATCACAGTATTTGAAAATTTTTAAGTTAGAGTTGTGTTTGGCCATATTTTTACAAAATTATTTAGAAATTGAATATATTTTGTCTTAATATGATTTAAATCATCAATTTCTTAAAAAAAAAAACTTAGCTTGACTTAACCACGTGTACGTATATTCATTCAACTTGACATATTTTTTGTTGGTGGCTTGAGATTTTTTAAAAAATAGACAGAAGGATGAATCTTGAAACTTTTTGGATAGTTCAGAAATGTTTTTTGTTTACTTATATAACATAAGAATGTATTTTAAGTTTATGTCATACTTCAGGATGATTTCAGTCAAATACTCGTGTTTGTTACTTTTTCTCTTGGTATCAATAAGTTGAACCTTCTAGTACAAGTGTTCAAGTTTCACATGGTGACAAGTGTGGGGACACATCTCACATTCAAACATTCGTTACACTTTACGTGTGTTGTTCAGACTCTTTAGAAATACTTTAAATAAATACATTGTGCTTAGATAATGCGACACTAACCTATTGATATTTTTAAATAGTTCAAGCAACATAACATTTCTATATAAAAAAAAAGACCTTTTGAATCTTTAATATTTTGAGATCCATATAGGCTAAAATCACTAGAAAACTGATTCTTTAACCCCTCTTGCACTCATGTTACGTCCAGCTCCTGGTGGATTAAAAACAGTATGTTGAGAATATAATTAATTAAAAAGATATGCTCTATTCAACAGTTTAAATTTTTAGATGAGATAGTCACACAAACATCAGATAAAGTTATGAAATAAGGGACAATTTATGAATTTAATTTGCAGAGAATTCCCAGTTGTAAATGGGAAAGCATTACAGTTCATTTATGGAAGCAAACAGTTCAAGACGAAGGGAGGTTTAGCAGCTGGAACAGCCACAACAAATGTGTATCGAAATTCGCAATTCAAGAAGACAATGAAAGCAATGCAGACCCCATGTTGTAGCCCTGATGAAGTGATATTCGGCCCTGATTTCCATCAGTCCTTGTACTGTCATCTCCTGTGTGGTCTCATTTTACGTAACGAAGTTCAAGTTGTCTCATCTACATTTGCTCATAGTATTGTCCATGCTTTTAGACAAT</genome_strand>
        <mrna_strand>TCCTCTTGTTACACATAAGGATTTGGAGCCTTACATTCATAGAATTGTTGATGGTGATCTTACTCCTATTCTTACTAGAAAATCTATTACCACTATCTCGTTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGAACAACTCAAGGAAAACCAAAATTTGTACCTTTCAATGAAGAATTGATGGAATCCACCATGCAAATATTCAAGACTTCTTTTGCCTTTAGGAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATTCCCAGTCGTAAATGGGAAAGCATTACAGTTCATTTATGGAAGCAAACAGTTCAAGACGAAGGGAGGTTTAGCAGCTGGAACAGCCACAACAAATGTATACCGAAATTCGCAATTCAAGAAGACAATGAAAGCAATGCAGACCCCGTGTTGTAGCCCCGATGAAGTGATATTCGGCCCTGATTTCAATCAATCCTTGTACTGTCATCTATTGTGTGGTCTCATTCTACGTAACGAAGTTCAAGTTGTCTCGTCTACATTTGCTCATAGTATTGTCCATGCTTTTAGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369259" ref_strand="+" ref_description="SGN-E369259 [TUS-25-G24]">
      <seq>caccatgcaaatattcaagacttcttttgcctttaggaacagagaattcccagttgtaaatgggaaagcattacagttcatttatggaagcaaacagttcaagacgaagggaggtttagcagctggaacagccacaacaaatgtgtatcgaaattcgcaattcaagaagacaatgaaagcaatgcagaccccatgttgtagccctgatgaagtgatattcggccctgatttccatcagtccttgtactgtcatctcttgtgtggtctcattttacgtaacgaagttcaagttgtctcatctacatttgctcatagtattgtccatgcttttagacaattcgaacaagtatggcaagaacttgtttctaacataagggacggagtcctttcaagtcgcgtaaatgtcccttctataagatcagcaatgtcaaaattactcaaacctgatccagaactggctgatactatttataacaagtgcattcggttaagtaattggtacgggttgatacctgaatttttccccaacacaaggtacatatatggtatcatgaccggatcaatggaaccttacttgacgaaattgaggcattatgcaggggatttacctctgcttagtgcagattacggatcttctgaaggatggatcggagcaaatgttaatcctgaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="131508" stop="134482"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131808" g_stop="131849" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131850" i_stop="133551" i_length="1702">
            <donor d_prob="1.000" d_score="1.00"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133552" g_stop="134182" g_length="631"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="673" r_length="631" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E369259" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>673</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369259" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131808" e_stop="131849"/>
          <exon e_start="133552" e_stop="134182"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCATGCAAATATTCAAGACTTCTTTTGCCTTTAGGAACAGGTAATATAATATCTTATTTATCTTTCTATGTTTTACACTATACTTTAAAAAAATTATTAATTTTTGGAGGATCGAACATATATCTGTCGGCATTTTGAAGAGTTTAAGCAATATAACTCTTTCTAATATTGGAAAAATGGGAAGTTTTTTATTTTGTTTCTACTTCTTTTTGTTTTTCTCTTAAAGTCATTGCATATCATTTGGTAATTGCCATCTTTTTCAACTCTACAGCCTCTTTTTTTTTTTGGCTAATGGCTTTTGTTTTATTTGTGGAAAAAGTTTAGTCCAATTTAATAACACAAGATGAGTTGTTTAGTTTTTTTTCTATTGGTACCAATAAATGGAAAAACAAAGTTTCTTTTCTTTTAAATAGTCTTTGTTAGAGTTATTGGCTAAAATCATTCCTTAACTATGATTTAAATTTAATTTACATCTTTATATTATCTAACTAAGTAAAAAATATTCTTATACTATACAAAAAAACTGATTGAACCAATAAAAAAATATTAGTTTGGTTTTGTCTTACCACAACGAGAAGATCAAAATTACCTAAAAAGAATAAGGATATGGGTAGAAAATGAATCTTTTTTTATCGGAATTTAAATTTGTTGTGTTGTCAGTTTATATGATTTTTGCATCATCAAGTAAATTGACTTGCAACAATACATAAGTTTTAAAATATTTATACAATAGGTTCCGATGATTAGAAATATTATGTAAAAAAAGTCATTTTAAAAGTATTACGCCCAACTTTTTAGAGATTTTCTTTAATAAAATATTTAGGAGTGTATCTACTATATATACAATGCAATTCATATTTTATACAATGTACGTAAATATTGGAAATTTAGTGAATTTACTTATGAGTTTAGTTAAGAAAATAAAATTAAGAATCACAGTATTTGAAAATTTTTAAGTTAGAGTTGTGTTTGGCCATATTTTTACAAAATTATTTAGAAATTGAATATATTTTGTCTTAATATGATTTAAATCATCAATTTCTTAAAAAAAAAAACTTAGCTTGACTTAACCACGTGTACGTATATTCATTCAACTTGACATATTTTTTGTTGGTGGCTTGAGATTTTTTAAAAAATAGACAGAAGGATGAATCTTGAAACTTTTTGGATAGTTCAGAAATGTTTTTTGTTTACTTATATAACATAAGAATGTATTTTAAGTTTATGTCATACTTCAGGATGATTTCAGTCAAATACTCGTGTTTGTTACTTTTTCTCTTGGTATCAATAAGTTGAACCTTCTAGTACAAGTGTTCAAGTTTCACATGGTGACAAGTGTGGGGACACATCTCACATTCAAACATTCGTTACACTTTACGTGTGTTGTTCAGACTCTTTAGAAATACTTTAAATAAATACATTGTGCTTAGATAATGCGACACTAACCTATTGATATTTTTAAATAGTTCAAGCAACATAACATTTCTATATAAAAAAAAAGACCTTTTGAATCTTTAATATTTTGAGATCCATATAGGCTAAAATCACTAGAAAACTGATTCTTTAACCCCTCTTGCACTCATGTTACGTCCAGCTCCTGGTGGATTAAAAACAGTATGTTGAGAATATAATTAATTAAAAAGATATGCTCTATTCAACAGTTTAAATTTTTAGATGAGATAGTCACACAAACATCAGATAAAGTTATGAAATAAGGGACAATTTATGAATTTAATTTGCAGAGAATTCCCAGTTGTAAATGGGAAAGCATTACAGTTCATTTATGGAAGCAAACAGTTCAAGACGAAGGGAGGTTTAGCAGCTGGAACAGCCACAACAAATGTGTATCGAAATTCGCAATTCAAGAAGACAATGAAAGCAATGCAGACCCCATGTTGTAGCCCTGATGAAGTGATATTCGGCCCTGATTTCCATCAGTCCTTGTACTGTCATCTCCTGTGTGGTCTCATTTTACGTAACGAAGTTCAAGTTGTCTCATCTACATTTGCTCATAGTATTGTCCATGCTTTTAGACAATTCGAACAAGTATGGCAAGAACTTGTTGCTAACATAAGGGACGGAGTCCTTTCAAGTCGCGTAAATGTCCCTTCTATAAGATCAGCAATGTCAAAATTACTCAAACCTGATCCAGAACTGGCTGATACTATTTATAACAAGTGCATTCGGTTAAGTAATTGGTACGGGTTGATACCTGAATTATTCCCCAACACAAGGTACATATATGGTATCATGACCGGATCAATGGAACCTTACTTGACGAAATTGAGGCATTATGCAGGGGATTTACCTCTGCTTAGTGCAGATTACGGATCTTCTGAAGGATGGATCGGAGCAAATGTTAATCCTGAATTG</genome_strand>
        <mrna_strand>CACCATGCAAATATTCAAGACTTCTTTTGCCTTTAGGAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATTCCCAGTTGTAAATGGGAAAGCATTACAGTTCATTTATGGAAGCAAACAGTTCAAGACGAAGGGAGGTTTAGCAGCTGGAACAGCCACAACAAATGTGTATCGAAATTCGCAATTCAAGAAGACAATGAAAGCAATGCAGACCCCATGTTGTAGCCCTGATGAAGTGATATTCGGCCCTGATTTCCATCAGTCCTTGTACTGTCATCTCTTGTGTGGTCTCATTTTACGTAACGAAGTTCAAGTTGTCTCATCTACATTTGCTCATAGTATTGTCCATGCTTTTAGACAATTCGAACAAGTATGGCAAGAACTTGTTTCTAACATAAGGGACGGAGTCCTTTCAAGTCGCGTAAATGTCCCTTCTATAAGATCAGCAATGTCAAAATTACTCAAACCTGATCCAGAACTGGCTGATACTATTTATAACAAGTGCATTCGGTTAAGTAATTGGTACGGGTTGATACCTGAATTTTTCCCCAACACAAGGTACATATATGGTATCATGACCGGATCAATGGAACCTTACTTGACGAAATTGAGGCATTATGCAGGGGATTTACCTCTGCTTAGTGCAGATTACGGATCTTCTGAAGGATGGATCGGAGCAAATGTTAATCCTGAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E248877" ref_strand="+" ref_description="SGN-E248877 [cLEF-49-G14]">
      <seq>caccatgcaaatattcaagacttcttttgcctgtaggaacagagaattcccagttgtaaatgggaaagcattacagttcatttatggaagcaaacagttcaagacgaagggaggtttagcagctggaacagccacaacaaatgtgtatcgaaattcgcaattcaagaagacaatgaaagcaatgcagaccccatgttgtagccctgatgaagtgatattcggccctgatttccatcagtccttgtactgtcatctcttgtgtggtctcattttacgtaacgaagttcaagttgtctcatctacatttgctcatagtattgtccatgcttttagacaattcgaacaagtatggcaagaacttgtttctaacataagggacggagtcctttcaagtcgcgtaaatgtcccttctataagatcagcaatgtcaaaattactcaaacctgatccagaactggctgatactatttataacaagtgcattcggttaagtaattggtacgggttgatacctgaatttttccc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="131508" stop="134334"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="131808" g_stop="131849" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="0.976"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="131850" i_stop="133551" i_length="1702">
            <donor d_prob="1.000" d_score="0.98"/>
            <acceptor a_prob="0.956" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="133552" g_stop="134034" g_length="483"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="525" r_length="483" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E248877" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>525</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E248877" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="131808" e_stop="131849"/>
          <exon e_start="133552" e_stop="134034"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCATGCAAATATTCAAGACTTCTTTTGCCTTTAGGAACAGGTAATATAATATCTTATTTATCTTTCTATGTTTTACACTATACTTTAAAAAAATTATTAATTTTTGGAGGATCGAACATATATCTGTCGGCATTTTGAAGAGTTTAAGCAATATAACTCTTTCTAATATTGGAAAAATGGGAAGTTTTTTATTTTGTTTCTACTTCTTTTTGTTTTTCTCTTAAAGTCATTGCATATCATTTGGTAATTGCCATCTTTTTCAACTCTACAGCCTCTTTTTTTTTTTGGCTAATGGCTTTTGTTTTATTTGTGGAAAAAGTTTAGTCCAATTTAATAACACAAGATGAGTTGTTTAGTTTTTTTTCTATTGGTACCAATAAATGGAAAAACAAAGTTTCTTTTCTTTTAAATAGTCTTTGTTAGAGTTATTGGCTAAAATCATTCCTTAACTATGATTTAAATTTAATTTACATCTTTATATTATCTAACTAAGTAAAAAATATTCTTATACTATACAAAAAAACTGATTGAACCAATAAAAAAATATTAGTTTGGTTTTGTCTTACCACAACGAGAAGATCAAAATTACCTAAAAAGAATAAGGATATGGGTAGAAAATGAATCTTTTTTTATCGGAATTTAAATTTGTTGTGTTGTCAGTTTATATGATTTTTGCATCATCAAGTAAATTGACTTGCAACAATACATAAGTTTTAAAATATTTATACAATAGGTTCCGATGATTAGAAATATTATGTAAAAAAAGTCATTTTAAAAGTATTACGCCCAACTTTTTAGAGATTTTCTTTAATAAAATATTTAGGAGTGTATCTACTATATATACAATGCAATTCATATTTTATACAATGTACGTAAATATTGGAAATTTAGTGAATTTACTTATGAGTTTAGTTAAGAAAATAAAATTAAGAATCACAGTATTTGAAAATTTTTAAGTTAGAGTTGTGTTTGGCCATATTTTTACAAAATTATTTAGAAATTGAATATATTTTGTCTTAATATGATTTAAATCATCAATTTCTTAAAAAAAAAAACTTAGCTTGACTTAACCACGTGTACGTATATTCATTCAACTTGACATATTTTTTGTTGGTGGCTTGAGATTTTTTAAAAAATAGACAGAAGGATGAATCTTGAAACTTTTTGGATAGTTCAGAAATGTTTTTTGTTTACTTATATAACATAAGAATGTATTTTAAGTTTATGTCATACTTCAGGATGATTTCAGTCAAATACTCGTGTTTGTTACTTTTTCTCTTGGTATCAATAAGTTGAACCTTCTAGTACAAGTGTTCAAGTTTCACATGGTGACAAGTGTGGGGACACATCTCACATTCAAACATTCGTTACACTTTACGTGTGTTGTTCAGACTCTTTAGAAATACTTTAAATAAATACATTGTGCTTAGATAATGCGACACTAACCTATTGATATTTTTAAATAGTTCAAGCAACATAACATTTCTATATAAAAAAAAAGACCTTTTGAATCTTTAATATTTTGAGATCCATATAGGCTAAAATCACTAGAAAACTGATTCTTTAACCCCTCTTGCACTCATGTTACGTCCAGCTCCTGGTGGATTAAAAACAGTATGTTGAGAATATAATTAATTAAAAAGATATGCTCTATTCAACAGTTTAAATTTTTAGATGAGATAGTCACACAAACATCAGATAAAGTTATGAAATAAGGGACAATTTATGAATTTAATTTGCAGAGAATTCCCAGTTGTAAATGGGAAAGCATTACAGTTCATTTATGGAAGCAAACAGTTCAAGACGAAGGGAGGTTTAGCAGCTGGAACAGCCACAACAAATGTGTATCGAAATTCGCAATTCAAGAAGACAATGAAAGCAATGCAGACCCCATGTTGTAGCCCTGATGAAGTGATATTCGGCCCTGATTTCCATCAGTCCTTGTACTGTCATCTCCTGTGTGGTCTCATTTTACGTAACGAAGTTCAAGTTGTCTCATCTACATTTGCTCATAGTATTGTCCATGCTTTTAGACAATTCGAACAAGTATGGCAAGAACTTGTTGCTAACATAAGGGACGGAGTCCTTTCAAGTCGCGTAAATGTCCCTTCTATAAGATCAGCAATGTCAAAATTACTCAAACCTGATCCAGAACTGGCTGATACTATTTATAACAAGTGCATTCGGTTAAGTAATTGGTACGGGTTGATACCTGAATTATTCCC</genome_strand>
        <mrna_strand>CACCATGCAAATATTCAAGACTTCTTTTGCCTGTAGGAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATTCCCAGTTGTAAATGGGAAAGCATTACAGTTCATTTATGGAAGCAAACAGTTCAAGACGAAGGGAGGTTTAGCAGCTGGAACAGCCACAACAAATGTGTATCGAAATTCGCAATTCAAGAAGACAATGAAAGCAATGCAGACCCCATGTTGTAGCCCTGATGAAGTGATATTCGGCCCTGATTTCCATCAGTCCTTGTACTGTCATCTCTTGTGTGGTCTCATTTTACGTAACGAAGTTCAAGTTGTCTCATCTACATTTGCTCATAGTATTGTCCATGCTTTTAGACAATTCGAACAAGTATGGCAAGAACTTGTTTCTAACATAAGGGACGGAGTCCTTTCAAGTCGCGTAAATGTCCCTTCTATAAGATCAGCAATGTCAAAATTACTCAAACCTGATCCAGAACTGGCTGATACTATTTATAACAAGTGCATTCGGTTAAGTAATTGGTACGGGTTGATACCTGAATTTTTCCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E409427" ref_strand="+" ref_description="SGN-E409427 [PPI-14-E11]">
      <seq>gagaattcccagtcgtaaaggggaaagcattacagttcatttatggaagcaagcagttcaaaacgaagggaggtttagcagctggaacagccacaacaaatgtgtatcgaaattcgcaatttaagaagacaatgaaagcaatgcagaccccgtgttgtagccccgatgaagtgatattcggccctgatttcaatcaatccttgtactgtcatctattgtgtggtctcattctacgtaacgaagttcaagttgtctcgtctacatttgctcatagtattgtccatgcttttagaaaattcgaacaagtatggcaagaacttgttgcaaatataagggacggagtcctttctagtcgcgtaactgttccttctataagatcagcaatgtcaaaattactcaagcctgatccagaactggctgatactatttataacaagtgcattcggttaagtaattggtacgggttgatacctgaattattcccaaacaccaggtacatatatggtantatgaccggatcaatggaaccgtacttgaagaaattgaggcattatgcangggagctacctctgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="133251" stop="134423"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133551" g_stop="134123" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="573" r_length="573" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E409427" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>573</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E409427" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133551" e_stop="134123"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGAATTCCCAGTTGTAAATGGGAAAGCATTACAGTTCATTTATGGAAGCAAACAGTTCAAGACGAAGGGAGGTTTAGCAGCTGGAACAGCCACAACAAATGTGTATCGAAATTCGCAATTCAAGAAGACAATGAAAGCAATGCAGACCCCATGTTGTAGCCCTGATGAAGTGATATTCGGCCCTGATTTCCATCAGTCCTTGTACTGTCATCTCCTGTGTGGTCTCATTTTACGTAACGAAGTTCAAGTTGTCTCATCTACATTTGCTCATAGTATTGTCCATGCTTTTAGACAATTCGAACAAGTATGGCAAGAACTTGTTGCTAACATAAGGGACGGAGTCCTTTCAAGTCGCGTAAATGTCCCTTCTATAAGATCAGCAATGTCAAAATTACTCAAACCTGATCCAGAACTGGCTGATACTATTTATAACAAGTGCATTCGGTTAAGTAATTGGTACGGGTTGATACCTGAATTATTCCCCAACACAAGGTACATATATGGTATCATGACCGGATCAATGGAACCTTACTTGACGAAATTGAGGCATTATGCAGGGGATTTACCTCTGC</genome_strand>
        <mrna_strand>GAGAATTCCCAGTCGTAAAGGGGAAAGCATTACAGTTCATTTATGGAAGCAAGCAGTTCAAAACGAAGGGAGGTTTAGCAGCTGGAACAGCCACAACAAATGTGTATCGAAATTCGCAATTTAAGAAGACAATGAAAGCAATGCAGACCCCGTGTTGTAGCCCCGATGAAGTGATATTCGGCCCTGATTTCAATCAATCCTTGTACTGTCATCTATTGTGTGGTCTCATTCTACGTAACGAAGTTCAAGTTGTCTCGTCTACATTTGCTCATAGTATTGTCCATGCTTTTAGAAAATTCGAACAAGTATGGCAAGAACTTGTTGCAAATATAAGGGACGGAGTCCTTTCTAGTCGCGTAACTGTTCCTTCTATAAGATCAGCAATGTCAAAATTACTCAAGCCTGATCCAGAACTGGCTGATACTATTTATAACAAGTGCATTCGGTTAAGTAATTGGTACGGGTTGATACCTGAATTATTCCCAAACACCAGGTACATATATGGTANTATGACCGGATCAATGGAACCGTACTTGAAGAAATTGAGGCATTATGCANGGGAGCTACCTCTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E701645" ref_strand="+" ref_description="SGN-E701645 [FA16CC03]">
      <seq>caaacctgatccagaactggctgatactatttataacaagtgcattcggttaagtaattggtacgggttgatacctgaattattccccaacacaaggtacatatatggtatcatgaccggatcaatggaaccttacttgacgaaattgaggcattatgcaggggatttacctctgcttagtgcagattacggatcttctgaaggatggatcggagcaaatgttaatcctgaattgcctcctgagctagttacttatgctgtacttcctaatattggttatttcgaattcattcctctcgtggaaaatgtagatggcgtggaggctacaccagttggtttaactgaagttaaactcgatgaagagtatgaaattgttgtcaccaatttcgctggtatgattttgttcttcccttccttggaaatacttttcatagtattgctcctgtagtttctttgtccttcaatttttattgctttctgttatttgttatacttcgattgtcatatatttactgcttttgttatgctttaacttccgttactccttttttggactgtttgtttcttgagctgagggtctattacaacctctctacctctggataaggtctgcatacactctatgctcctcagatcccatttgggaccttatgttgttattcgttttgacttgattgaatatataccgtgtaagatgcaggtttatatcgatacaggcttggtgatgtggtaaagataaaaggattccacaatcgcactcccgagctccaatttatttgtcgtaggaatctcttactaagcatcaacatcgacaaaaacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="133648" stop="135068"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133948" g_stop="134768" g_length="821"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="821" r_length="821" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E701645" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E701645" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133948" e_stop="134768"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAACCTGATCCAGAACTGGCTGATACTATTTATAACAAGTGCATTCGGTTAAGTAATTGGTACGGGTTGATACCTGAATTATTCCCCAACACAAGGTACATATATGGTATCATGACCGGATCAATGGAACCTTACTTGACGAAATTGAGGCATTATGCAGGGGATTTACCTCTGCTTAGTGCAGATTACGGATCTTCTGAAGGATGGATCGGAGCAAATGTTAATCCTGAATTGCCTCCTGAGCTAGTTACTTATGCTGTACTTCCTAATATTGGTTATTTCGAATTCATTCCTCTCGTGGAAAATGTAGATGGCGTGGAGGCTACACCAGTTGGTTTAACTGAAGTTAAACTCGATGAAGAGTATGAAATTGTTGTCACCAATTTCGCTGGTATGATTTTGTTCTTCCCTTCCTTGGAAATACTTTTCATAGTATTGCTCCTGTAGTTTCTTTGTCCTTCAATTTTTATTGCTTTCTGTTATTTGTTATACTTCGATTGTCATATATTTACTGCTTTTGTTATGCTTTAACTTCCGTTACTCCTTTTTTGGACTGTTTGTTTCTTGAGTTGAGGGTCTATTACAACCTCTCTACCTCTGGATAAGGTCTGCATACACTCTATCCTCCTCAGATCCCATTTGGGACCTTATGTTGTTATTCGTTTTGACTTGATTGAATATATACCGTGTAAGATGCAGGTTTATATCGATACAGGCTTGGTGATGTGGTAAAGATAAAAGGATTCCACAATCGCACTCCCGAGCTCCAATTTATTTGTCGTAGGAATCTCTTACTAAGCATCAACATCGACAAAAACAC</genome_strand>
        <mrna_strand>CAAACCTGATCCAGAACTGGCTGATACTATTTATAACAAGTGCATTCGGTTAAGTAATTGGTACGGGTTGATACCTGAATTATTCCCCAACACAAGGTACATATATGGTATCATGACCGGATCAATGGAACCTTACTTGACGAAATTGAGGCATTATGCAGGGGATTTACCTCTGCTTAGTGCAGATTACGGATCTTCTGAAGGATGGATCGGAGCAAATGTTAATCCTGAATTGCCTCCTGAGCTAGTTACTTATGCTGTACTTCCTAATATTGGTTATTTCGAATTCATTCCTCTCGTGGAAAATGTAGATGGCGTGGAGGCTACACCAGTTGGTTTAACTGAAGTTAAACTCGATGAAGAGTATGAAATTGTTGTCACCAATTTCGCTGGTATGATTTTGTTCTTCCCTTCCTTGGAAATACTTTTCATAGTATTGCTCCTGTAGTTTCTTTGTCCTTCAATTTTTATTGCTTTCTGTTATTTGTTATACTTCGATTGTCATATATTTACTGCTTTTGTTATGCTTTAACTTCCGTTACTCCTTTTTTGGACTGTTTGTTTCTTGAGCTGAGGGTCTATTACAACCTCTCTACCTCTGGATAAGGTCTGCATACACTCTATGCTCCTCAGATCCCATTTGGGACCTTATGTTGTTATTCGTTTTGACTTGATTGAATATATACCGTGTAAGATGCAGGTTTATATCGATACAGGCTTGGTGATGTGGTAAAGATAAAAGGATTCCACAATCGCACTCCCGAGCTCCAATTTATTTGTCGTAGGAATCTCTTACTAAGCATCAACATCGACAAAAACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E341046" ref_strand="+" ref_description="SGN-E341046 [cTOE-22-E21]">
      <seq>ttgatacctgaattattccccaacacaaggtacatatatggtatcatgaccggatcaatggaaccttacttgacgaaattgaggcattatgcaggggatttacctctgcttagtgcagattacggatcttctgaaggatggatcggagcaaatgttaatcctgaattgcctcctgagctagttacttatgctgtacttcctaatattggttatttcgaattcattcctctcgtggaaaatgtagatggcgtggaggctacaccagttggtttaactgaagttaaactcgatgaagagtatgaaattgttgtcaccaatttcgctggtttatatcgatacaggcttggtgatgtggtaaagataaaaggattccacaatcgcactcccgagctccaatttatttgtcgtaggaatctcttactaagcatcaacatcgacaaaaacactgagaaagatttacaactagccgtggaagcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="133715" stop="135101"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134015" g_stop="134339" g_length="325"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="325" r_length="325" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134340" i_stop="134647" i_length="308">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.976" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134648" g_stop="134801" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="326" r_stop="479" r_length="154" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E341046" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>479</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E341046" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134015" e_stop="134339"/>
          <exon e_start="134648" e_stop="134801"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGATACCTGAATTATTCCCCAACACAAGGTACATATATGGTATCATGACCGGATCAATGGAACCTTACTTGACGAAATTGAGGCATTATGCAGGGGATTTACCTCTGCTTAGTGCAGATTACGGATCTTCTGAAGGATGGATCGGAGCAAATGTTAATCCTGAATTGCCTCCTGAGCTAGTTACTTATGCTGTACTTCCTAATATTGGTTATTTCGAATTCATTCCTCTCGTGGAAAATGTAGATGGCGTGGAGGCTACACCAGTTGGTTTAACTGAAGTTAAACTCGATGAAGAGTATGAAATTGTTGTCACCAATTTCGCTGGTATGATTTTGTTCTTCCCTTCCTTGGAAATACTTTTCATAGTATTGCTCCTGTAGTTTCTTTGTCCTTCAATTTTTATTGCTTTCTGTTATTTGTTATACTTCGATTGTCATATATTTACTGCTTTTGTTATGCTTTAACTTCCGTTACTCCTTTTTTGGACTGTTTGTTTCTTGAGTTGAGGGTCTATTACAACCTCTCTACCTCTGGATAAGGTCTGCATACACTCTATCCTCCTCAGATCCCATTTGGGACCTTATGTTGTTATTCGTTTTGACTTGATTGAATATATACCGTGTAAGATGCAGGTTTATATCGATACAGGCTTGGTGATGTGGTAAAGATAAAAGGATTCCACAATCGCACTCCCGAGCTCCAATTTATTTGTCGTAGGAATCTCTTACTAAGCATCAACATCGACAAAAACACTGAGAAAGATTTACAACTAGCCGTGGAAGCAGC</genome_strand>
        <mrna_strand>TTGATACCTGAATTATTCCCCAACACAAGGTACATATATGGTATCATGACCGGATCAATGGAACCTTACTTGACGAAATTGAGGCATTATGCAGGGGATTTACCTCTGCTTAGTGCAGATTACGGATCTTCTGAAGGATGGATCGGAGCAAATGTTAATCCTGAATTGCCTCCTGAGCTAGTTACTTATGCTGTACTTCCTAATATTGGTTATTTCGAATTCATTCCTCTCGTGGAAAATGTAGATGGCGTGGAGGCTACACCAGTTGGTTTAACTGAAGTTAAACTCGATGAAGAGTATGAAATTGTTGTCACCAATTTCGCTG....................................................................................................................................................................................................................................................................................................................GTTTATATCGATACAGGCTTGGTGATGTGGTAAAGATAAAAGGATTCCACAATCGCACTCCCGAGCTCCAATTTATTTGTCGTAGGAATCTCTTACTAAGCATCAACATCGACAAAAACACTGAGAAAGATTTACAACTAGCCGTGGAAGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E432099" ref_strand="+" ref_description="SGN-E432099 [STM-56-D11]">
      <seq>tgtgagctagttacttatgctgttcttcctaatattggttatttcgaattcattcctctcgtggaaaatgtagatggcgtggaggctacgccagttggtttaactgaagttaaactcggtgaagagtatgaaattgttgtcaccaatttcgctggtttatatcgatacaggctcggtgatgtggtaaagataaaaggattctacaatggcactccagaactccagtttatttgtcgtaggaatctcttactgagcatcaacatcgacaaaaacaccgagaaagatttacaactagccgtggaggcagcagcacagctgttattaaacgagaagttagaagtagtcgatttctctagcaacgtaaacacatcagctgatccagggcactacgtgatcttctgggaactgaatggtaaggcaagtgaggaaattttgaaagaatgttgtaattgtttagacaaatctttcgtcgatgcaggctatgttagctctcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="133888" stop="135287"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134186" g_stop="134339" g_length="154"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="154" r_length="154" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134340" i_stop="134647" i_length="308">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134648" g_stop="134987" g_length="340"/>
          <reference_exon_boundary r_type="cDNA" r_start="155" r_stop="494" r_length="340" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E432099" ref_strand="+">
        <total_alignment_score>0.955</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E432099" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134186" e_stop="134339"/>
          <exon e_start="134648" e_stop="134987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTGAGCTAGTTACTTATGCTGTACTTCCTAATATTGGTTATTTCGAATTCATTCCTCTCGTGGAAAATGTAGATGGCGTGGAGGCTACACCAGTTGGTTTAACTGAAGTTAAACTCGATGAAGAGTATGAAATTGTTGTCACCAATTTCGCTGGTATGATTTTGTTCTTCCCTTCCTTGGAAATACTTTTCATAGTATTGCTCCTGTAGTTTCTTTGTCCTTCAATTTTTATTGCTTTCTGTTATTTGTTATACTTCGATTGTCATATATTTACTGCTTTTGTTATGCTTTAACTTCCGTTACTCCTTTTTTGGACTGTTTGTTTCTTGAGTTGAGGGTCTATTACAACCTCTCTACCTCTGGATAAGGTCTGCATACACTCTATCCTCCTCAGATCCCATTTGGGACCTTATGTTGTTATTCGTTTTGACTTGATTGAATATATACCGTGTAAGATGCAGGTTTATATCGATACAGGCTTGGTGATGTGGTAAAGATAAAAGGATTCCACAATCGCACTCCCGAGCTCCAATTTATTTGTCGTAGGAATCTCTTACTAAGCATCAACATCGACAAAAACACTGAGAAAGATTTACAACTAGCCGTGGAAGCAGCAGCACAGCTGCTATTAAACGAGAAGTTAGAAGTAGTCGATTTCTCTAGCAACGTAAACACAACAGCTGATCCAGGGCACTATGTAATCTTCTGGGAACTGAATGGTGAGGCAAGTGAGGAAATTCTGAAAGAATGTTGTAATTGTTTGGACAAATCTTTCGTCGATGCTGGCTATGTTAGCTCTCG</genome_strand>
        <mrna_strand>TGTGAGCTAGTTACTTATGCTGTTCTTCCTAATATTGGTTATTTCGAATTCATTCCTCTCGTGGAAAATGTAGATGGCGTGGAGGCTACGCCAGTTGGTTTAACTGAAGTTAAACTCGGTGAAGAGTATGAAATTGTTGTCACCAATTTCGCTG....................................................................................................................................................................................................................................................................................................................GTTTATATCGATACAGGCTCGGTGATGTGGTAAAGATAAAAGGATTCTACAATGGCACTCCAGAACTCCAGTTTATTTGTCGTAGGAATCTCTTACTGAGCATCAACATCGACAAAAACACCGAGAAAGATTTACAACTAGCCGTGGAGGCAGCAGCACAGCTGTTATTAAACGAGAAGTTAGAAGTAGTCGATTTCTCTAGCAACGTAAACACATCAGCTGATCCAGGGCACTACGTGATCTTCTGGGAACTGAATGGTAAGGCAAGTGAGGAAATTTTGAAAGAATGTTGTAATTGTTTAGACAAATCTTTCGTCGATGCAGGCTATGTTAGCTCTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E400969" ref_strand="+" ref_description="SGN-E400969 [PPC-2-N21]">
      <seq>cgagctagttacttatgctgttcttcctaatattggttatttcgaattcattcctctcgtggaaaatgtagatggcgtggaggctacgccagttggtttaactgaagttaaactcggtgaagagtatgaaattgttgtcaccaatttcgctggtttatatcgatacaggctcggtgatgtggtaaagataaaaggattctacaatggcactccagaactccagtttatttgtcgtaggaatctcttactgagcatcaacatcgacaaaaacaccgagaaagatttacaactagccgtggaggcagcagcacagctgttattaaacgagaagttagaagtagtcgatttctctagcaacgtaaacacatcagctgatccagggcactacgtgatcttctgggaactgaatggtaaggcaagtgaggaaattttgaaagaatgttgtaattgtttagacaaatctttcgtcgatgcaggctatgttagctctcggaaggtcaaaaccatcggtgcccttgagctacggatagtgaagagagggacgtttcataagattttagatcattttgntggattangagcagcagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="133889" stop="135383"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134188" g_stop="134339" g_length="152"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="152" r_length="152" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134340" i_stop="134647" i_length="308">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134648" g_stop="135083" g_length="436"/>
          <reference_exon_boundary r_type="cDNA" r_start="153" r_stop="588" r_length="436" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E400969" ref_strand="+">
        <total_alignment_score>0.956</total_alignment_score>
        <cumulative_length_of_scored_exons>588</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E400969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134188" e_stop="134339"/>
          <exon e_start="134648" e_stop="135083"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAGCTAGTTACTTATGCTGTACTTCCTAATATTGGTTATTTCGAATTCATTCCTCTCGTGGAAAATGTAGATGGCGTGGAGGCTACACCAGTTGGTTTAACTGAAGTTAAACTCGATGAAGAGTATGAAATTGTTGTCACCAATTTCGCTGGTATGATTTTGTTCTTCCCTTCCTTGGAAATACTTTTCATAGTATTGCTCCTGTAGTTTCTTTGTCCTTCAATTTTTATTGCTTTCTGTTATTTGTTATACTTCGATTGTCATATATTTACTGCTTTTGTTATGCTTTAACTTCCGTTACTCCTTTTTTGGACTGTTTGTTTCTTGAGTTGAGGGTCTATTACAACCTCTCTACCTCTGGATAAGGTCTGCATACACTCTATCCTCCTCAGATCCCATTTGGGACCTTATGTTGTTATTCGTTTTGACTTGATTGAATATATACCGTGTAAGATGCAGGTTTATATCGATACAGGCTTGGTGATGTGGTAAAGATAAAAGGATTCCACAATCGCACTCCCGAGCTCCAATTTATTTGTCGTAGGAATCTCTTACTAAGCATCAACATCGACAAAAACACTGAGAAAGATTTACAACTAGCCGTGGAAGCAGCAGCACAGCTGCTATTAAACGAGAAGTTAGAAGTAGTCGATTTCTCTAGCAACGTAAACACAACAGCTGATCCAGGGCACTATGTAATCTTCTGGGAACTGAATGGTGAGGCAAGTGAGGAAATTCTGAAAGAATGTTGTAATTGTTTGGACAAATCTTTCGTCGATGCTGGCTATGTTAGCTCTCGGAAGGTCAAAACCATCGGTGCCCTTGAGCTACGGATAGTGAAGAGAGGGACATTTCATAAGATTTTAGATCATTTTGTAGGACTAGGAGCAGCAGT</genome_strand>
        <mrna_strand>CGAGCTAGTTACTTATGCTGTTCTTCCTAATATTGGTTATTTCGAATTCATTCCTCTCGTGGAAAATGTAGATGGCGTGGAGGCTACGCCAGTTGGTTTAACTGAAGTTAAACTCGGTGAAGAGTATGAAATTGTTGTCACCAATTTCGCTG....................................................................................................................................................................................................................................................................................................................GTTTATATCGATACAGGCTCGGTGATGTGGTAAAGATAAAAGGATTCTACAATGGCACTCCAGAACTCCAGTTTATTTGTCGTAGGAATCTCTTACTGAGCATCAACATCGACAAAAACACCGAGAAAGATTTACAACTAGCCGTGGAGGCAGCAGCACAGCTGTTATTAAACGAGAAGTTAGAAGTAGTCGATTTCTCTAGCAACGTAAACACATCAGCTGATCCAGGGCACTACGTGATCTTCTGGGAACTGAATGGTAAGGCAAGTGAGGAAATTTTGAAAGAATGTTGTAATTGTTTAGACAAATCTTTCGTCGATGCAGGCTATGTTAGCTCTCGGAAGGTCAAAACCATCGGTGCCCTTGAGCTACGGATAGTGAAGAGAGGGACGTTTCATAAGATTTTAGATCATTTTGNTGGATTANGAGCAGCAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E572878" ref_strand="-" ref_description="SGN-E572878 [32100]">
      <seq>ttcattcctctcgtggaaaatgtagatggcgtggaggctacgccagttggtttaactgaagttaaactcggtgaagagtatgaaattgttgtcaccaatttcgctggtttatatcgatacaggctcggtgatgtggtaaagataaaaggattctacaatggcactccagaactccagtttatttgtcgtaggaatctcttactgagcatcaacatcgacaaaaacaccgagaaagatttacaactagccgtggaggcagcagcacagctgttattaaacgagaagttagaagtagtcgatttctctagcaacgtaaacacatcagctgatccagggcactacgtgatcttctgggaactgaatggctatgttagctctcggaaggtcaaaaccatcggtccccttgagctacggatagtgaagagagggacgtttcataagattttagatcattttgttggattaggagcagcagttagccagttcaaaacaccgagatgtgtcggtacgacaaatctctctgtgctgcaaatattgactagtaatgctgttgagagctattttagtactgcatttagttgaattatatgtatgtttgttcccagaattgtaagctggttacttttcatatcttaataaaacactttgaatttgta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="133934" stop="135563"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134234" g_stop="134339" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="106" r_length="106" r_score="0.981"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134340" i_stop="134647" i_length="308">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134648" g_stop="134905" g_length="258"/>
          <reference_exon_boundary r_type="cDNA" r_start="107" r_stop="364" r_length="258" r_score="0.950"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="134906" i_stop="134971" i_length="66">
            <donor d_prob="0.000" d_score="0.94"/>
            <acceptor a_prob="0.000" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="134972" g_stop="135263" g_length="292"/>
          <reference_exon_boundary r_type="cDNA" r_start="365" r_stop="656" r_length="292" r_score="0.962"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E572878" ref_strand="-">
        <total_alignment_score>0.960</total_alignment_score>
        <cumulative_length_of_scored_exons>656</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E572878" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="134234" e_stop="134339"/>
          <exon e_start="134648" e_stop="134905"/>
          <exon e_start="134972" e_stop="135263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTCCTCTCGTGGAAAATGTAGATGGCGTGGAGGCTACACCAGTTGGTTTAACTGAAGTTAAACTCGATGAAGAGTATGAAATTGTTGTCACCAATTTCGCTGGTATGATTTTGTTCTTCCCTTCCTTGGAAATACTTTTCATAGTATTGCTCCTGTAGTTTCTTTGTCCTTCAATTTTTATTGCTTTCTGTTATTTGTTATACTTCGATTGTCATATATTTACTGCTTTTGTTATGCTTTAACTTCCGTTACTCCTTTTTTGGACTGTTTGTTTCTTGAGTTGAGGGTCTATTACAACCTCTCTACCTCTGGATAAGGTCTGCATACACTCTATCCTCCTCAGATCCCATTTGGGACCTTATGTTGTTATTCGTTTTGACTTGATTGAATATATACCGTGTAAGATGCAGGTTTATATCGATACAGGCTTGGTGATGTGGTAAAGATAAAAGGATTCCACAATCGCACTCCCGAGCTCCAATTTATTTGTCGTAGGAATCTCTTACTAAGCATCAACATCGACAAAAACACTGAGAAAGATTTACAACTAGCCGTGGAAGCAGCAGCACAGCTGCTATTAAACGAGAAGTTAGAAGTAGTCGATTTCTCTAGCAACGTAAACACAACAGCTGATCCAGGGCACTATGTAATCTTCTGGGAACTGAATGGTGAGGCAAGTGAGGAAATTCTGAAAGAATGTTGTAATTGTTTGGACAAATCTTTCGTCGATGCTGGCTATGTTAGCTCTCGGAAGGTCAAAACCATCGGTGCCCTTGAGCTACGGATAGTGAAGAGAGGGACATTTCATAAGATTTTAGATCATTTTGTAGGACTAGGAGCAGCAGTTAGCCAGTTCAAAACTCCGAGATGTGTCGGTACAACGAATCTCTCTGTGCTGCAAATATTGACTAGTAATGTTGTTGAGAGCTATTTTAGTACTGCATTTAGTTGAATTATATGTATGTTTGTTCCCAGAATTGTAAGCTGATTACTTTTCATATCTTAATAATACACTCTGAATTTGTA</genome_strand>
        <mrna_strand>TTCATTCCTCTCGTGGAAAATGTAGATGGCGTGGAGGCTACGCCAGTTGGTTTAACTGAAGTTAAACTCGGTGAAGAGTATGAAATTGTTGTCACCAATTTCGCTG....................................................................................................................................................................................................................................................................................................................GTTTATATCGATACAGGCTCGGTGATGTGGTAAAGATAAAAGGATTCTACAATGGCACTCCAGAACTCCAGTTTATTTGTCGTAGGAATCTCTTACTGAGCATCAACATCGACAAAAACACCGAGAAAGATTTACAACTAGCCGTGGAGGCAGCAGCACAGCTGTTATTAAACGAGAAGTTAGAAGTAGTCGATTTCTCTAGCAACGTAAACACATCAGCTGATCCAGGGCACTACGTGATCTTCTGGGAACTGAATG..................................................................GCTATGTTAGCTCTCGGAAGGTCAAAACCATCGGTCCCCTTGAGCTACGGATAGTGAAGAGAGGGACGTTTCATAAGATTTTAGATCATTTTGTTGGATTAGGAGCAGCAGTTAGCCAGTTCAAAACACCGAGATGTGTCGGTACGACAAATCTCTCTGTGCTGCAAATATTGACTAGTAATGCTGTTGAGAGCTATTTTAGTACTGCATTTAGTTGAATTATATGTATGTTTGTTCCCAGAATTGTAAGCTGGTTACTTTTCATATCTTAATAAAACACTTTGAATTTGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E432100" ref_strand="-" ref_description="SGN-E432100 [STM-56-D11]">
      <seq>gaaaatgtagatggcgtggaggctacgccagttggtttaactgaagttaaactcggtgaagagtatgaaattgttgtcaccaatttcgctggtttatatcgatacaggctcggtgatgtggtaaagataaaaggattctacaatggcactccagaactccagtttatttgtcgtaggaatctcttactgagcatcaacatcgacaaaaacaccgagaaagatttacaactagccgtggaggcagcagcacagctgttattaaacgagaagttagaagtagtcgatttctctagcaacgtaaacacatcagctgatccagggcactacgtgatcttctgggaactgaatggtaaggcaagtgaggaaattttgaaagaatgttgtaattgtttagacaaatctttcgtcgatgcaggctatgttagctctcggaaggtcaaaaccatcggtgcccttgagctacggatagtgaagagagggacgtttcataagattttagatcattttgttggattaggagcagcagttagccagttcaaaacaccgagatgtgtcggtacgacaaatctctctgtgctgcaaatattgactagtaatgctgttgagagctattttagtactgcatttagttgaattataggtaagtttgttcccagaattttaagctggttacttttcatatcttaataaaccacggtgaatttgtcaaaaaaaacccctttttagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="133949" stop="135567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134249" g_stop="134339" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="91" r_length="91" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="134340" i_stop="134647" i_length="308">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.976" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="134648" g_stop="135260" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="92" r_stop="704" r_length="613" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E432100" ref_strand="-">
        <total_alignment_score>0.952</total_alignment_score>
        <cumulative_length_of_scored_exons>704</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E432100" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="134249" e_stop="134339"/>
          <exon e_start="134648" e_stop="135260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAATGTAGATGGCGTGGAGGCTACACCAGTTGGTTTAACTGAAGTTAAACTCGATGAAGAGTATGAAATTGTTGTCACCAATTTCGCTGGTATGATTTTGTTCTTCCCTTCCTTGGAAATACTTTTCATAGTATTGCTCCTGTAGTTTCTTTGTCCTTCAATTTTTATTGCTTTCTGTTATTTGTTATACTTCGATTGTCATATATTTACTGCTTTTGTTATGCTTTAACTTCCGTTACTCCTTTTTTGGACTGTTTGTTTCTTGAGTTGAGGGTCTATTACAACCTCTCTACCTCTGGATAAGGTCTGCATACACTCTATCCTCCTCAGATCCCATTTGGGACCTTATGTTGTTATTCGTTTTGACTTGATTGAATATATACCGTGTAAGATGCAGGTTTATATCGATACAGGCTTGGTGATGTGGTAAAGATAAAAGGATTCCACAATCGCACTCCCGAGCTCCAATTTATTTGTCGTAGGAATCTCTTACTAAGCATCAACATCGACAAAAACACTGAGAAAGATTTACAACTAGCCGTGGAAGCAGCAGCACAGCTGCTATTAAACGAGAAGTTAGAAGTAGTCGATTTCTCTAGCAACGTAAACACAACAGCTGATCCAGGGCACTATGTAATCTTCTGGGAACTGAATGGTGAGGCAAGTGAGGAAATTCTGAAAGAATGTTGTAATTGTTTGGACAAATCTTTCGTCGATGCTGGCTATGTTAGCTCTCGGAAGGTCAAAACCATCGGTGCCCTTGAGCTACGGATAGTGAAGAGAGGGACATTTCATAAGATTTTAGATCATTTTGTAGGACTAGGAGCAGCAGTTAGCCAGTTCAAAACTCCGAGATGTGTCGGTACAACGAATCTCTCTGTGCTGCAAATATTGACTAGTAATGTTGTTGAGAGCTATTTTAGTACTGCATTTAGTTGAATTATATGTATGTTTGTTCCCAGAATTGTAAGCTGATTACTTTTCATATCTTAATAATACACTCTGAATTT</genome_strand>
        <mrna_strand>GAAAATGTAGATGGCGTGGAGGCTACGCCAGTTGGTTTAACTGAAGTTAAACTCGGTGAAGAGTATGAAATTGTTGTCACCAATTTCGCTG....................................................................................................................................................................................................................................................................................................................GTTTATATCGATACAGGCTCGGTGATGTGGTAAAGATAAAAGGATTCTACAATGGCACTCCAGAACTCCAGTTTATTTGTCGTAGGAATCTCTTACTGAGCATCAACATCGACAAAAACACCGAGAAAGATTTACAACTAGCCGTGGAGGCAGCAGCACAGCTGTTATTAAACGAGAAGTTAGAAGTAGTCGATTTCTCTAGCAACGTAAACACATCAGCTGATCCAGGGCACTACGTGATCTTCTGGGAACTGAATGGTAAGGCAAGTGAGGAAATTTTGAAAGAATGTTGTAATTGTTTAGACAAATCTTTCGTCGATGCAGGCTATGTTAGCTCTCGGAAGGTCAAAACCATCGGTGCCCTTGAGCTACGGATAGTGAAGAGAGGGACGTTTCATAAGATTTTAGATCATTTTGTTGGATTAGGAGCAGCAGTTAGCCAGTTCAAAACACCGAGATGTGTCGGTACGACAAATCTCTCTGTGCTGCAAATATTGACTAGTAATGCTGTTGAGAGCTATTTTAGTACTGCATTTAGTTGAATTATAGGTAAGTTTGTTCCCAGAATTTTAAGCTGGTTACTTTTCATATCTTAATAAACCACGGTGAATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369258" ref_strand="+" ref_description="SGN-E369258 [TUS-25-G24](-)">
      <seq>atgctcctcagatcccatttgggaccttatgttgttattcgttttgacttgattgaatatataccgtgtaagatgcaggtttatatcgatacaggcttggtgatgtggtaaagataaaaggattccacaatcgcactcccgagctccaatttatttgtcgtaggaatctcttactaagcatcaacatcgacaaaaacactgagaaagatttacaactagccgtggaagcagcagcacagctgctattaaacgagaagttagaagtagtcgatttctctagcaacgtaaacacatcagctgatccagggcactatgtaatcttctgggaactgaatggtgaggcaagtgaggaaattctgaaagaatgttgtaattgtttggacaaatctttcgtcgatgctggctatgttagctctcggaaggtcaaaaccatcggtgcccttgagctacggatagtgaagagagggacatttcataagattttagatcattttgtaggactaggagcagcagttagccagttcaaaactccgagatgtgtcggtacaacgaatctctctgtgctgcaaatattgactagtaatgttgttgagagctattttagtactgcatttagttgaattatatgtatgtttgttcccagaattgtaagctgattacttttcatatcttaataatacactctgaatttgtacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="134270" stop="135567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134570" g_stop="135278" g_length="709"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="709" r_length="709" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E369258" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>709</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369258" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134570" e_stop="135278"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCTCCTCAGATCCCATTTGGGACCTTATGTTGTTATTCGTTTTGACTTGATTGAATATATACCGTGTAAGATGCAGGTTTATATCGATACAGGCTTGGTGATGTGGTAAAGATAAAAGGATTCCACAATCGCACTCCCGAGCTCCAATTTATTTGTCGTAGGAATCTCTTACTAAGCATCAACATCGACAAAAACACTGAGAAAGATTTACAACTAGCCGTGGAAGCAGCAGCACAGCTGCTATTAAACGAGAAGTTAGAAGTAGTCGATTTCTCTAGCAACGTAAACACAACAGCTGATCCAGGGCACTATGTAATCTTCTGGGAACTGAATGGTGAGGCAAGTGAGGAAATTCTGAAAGAATGTTGTAATTGTTTGGACAAATCTTTCGTCGATGCTGGCTATGTTAGCTCTCGGAAGGTCAAAACCATCGGTGCCCTTGAGCTACGGATAGTGAAGAGAGGGACATTTCATAAGATTTTAGATCATTTTGTAGGACTAGGAGCAGCAGTTAGCCAGTTCAAAACTCCGAGATGTGTCGGTACAACGAATCTCTCTGTGCTGCAAATATTGACTAGTAATGTTGTTGAGAGCTATTTTAGTACTGCATTTAGTTGAATTATATGTATGTTTGTTCCCAGAATTGTAAGCTGATTACTTTTCATATCTTAATAATACACTCTGAATTTGTACAAATTTTGTAGGAC</genome_strand>
        <mrna_strand>ATGCTCCTCAGATCCCATTTGGGACCTTATGTTGTTATTCGTTTTGACTTGATTGAATATATACCGTGTAAGATGCAGGTTTATATCGATACAGGCTTGGTGATGTGGTAAAGATAAAAGGATTCCACAATCGCACTCCCGAGCTCCAATTTATTTGTCGTAGGAATCTCTTACTAAGCATCAACATCGACAAAAACACTGAGAAAGATTTACAACTAGCCGTGGAAGCAGCAGCACAGCTGCTATTAAACGAGAAGTTAGAAGTAGTCGATTTCTCTAGCAACGTAAACACATCAGCTGATCCAGGGCACTATGTAATCTTCTGGGAACTGAATGGTGAGGCAAGTGAGGAAATTCTGAAAGAATGTTGTAATTGTTTGGACAAATCTTTCGTCGATGCTGGCTATGTTAGCTCTCGGAAGGTCAAAACCATCGGTGCCCTTGAGCTACGGATAGTGAAGAGAGGGACATTTCATAAGATTTTAGATCATTTTGTAGGACTAGGAGCAGCAGTTAGCCAGTTCAAAACTCCGAGATGTGTCGGTACAACGAATCTCTCTGTGCTGCAAATATTGACTAGTAATGTTGTTGAGAGCTATTTTAGTACTGCATTTAGTTGAATTATATGTATGTTTGTTCCCAGAATTGTAAGCTGATTACTTTTCATATCTTAATAATACACTCTGAATTTGTACAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E426112" ref_strand="+" ref_description="SGN-E426112 [STM-46-E21]">
      <seq>taagatatgaaaagtaaccagcttaaaattctgggaacaaacatacatataattcaactaaatgcagtactaaaatagctctcaacagcattactagtcaatatttgcagcacagagagatttgtcgtaccgacacatctcggtgttttgaactggctaactgctgctcctaatccaacaaaatgatctaaaatcttatgaaacgtccctctcttcactatccgtagctcaagggcaccgatggttttgaccttccgagagctaacatagcctgcatcgacgaaagatttgtctaaacaattacaacattctttcaaaatttcctcacttgccttaccattcagttcccagaagatcacgtagtgccctggatcagctgatgtgtttacgttgctagagaaatcgactacttctaacttctcgtttaataacagctgtgctgctgcctccacggctagttgtaaatctttctcggtgtttttgtcgatgttgatgctcagtaagagattcctacgacaaataaactggagttctggagtgccattgtagaatccttttatctttaccacatcaccgagcctgtatcgatataaacctgcattttacatgtgtatattcaatcaaatcaaaacgaataacaacataactagtgtagtcccaaatggaacctgaggaggatagagtgtacgcaaaccttacccctac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="135542" stop="134248"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135242" g_stop="134595" g_length="648"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="647" r_length="647" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E426112" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>648</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135242" e_stop="134595"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAGATATGAAAAGTAATCAGCTTACAATTCTGGGAACAAACATACATATAATTCAACTAAATGCAGTACTAAAATAGCTCTCAACAACATTACTAGTCAATATTTGCAGCACAGAGAGATTCGTTGTACCGACACATCTCGGAGTTTTGAACTGGCTAACTGCTGCTCCTAGTCCTACAAAATGATCTAAAATCTTATGAAATGTCCCTCTCTTCACTATCCGTAGCTCAAGGGCACCGATGGTTTTGACCTTCCGAGAGCTAACATAGCCAGCATCGACGAAAGATTTGTCCAAACAATTACAACATTCTTTCAGAATTTCCTCACTTGCCTCACCATTCAGTTCCCAGAAGATTACATAGTGCCCTGGATCAGCTGTTGTGTTTACGTTGCTAGAGAAATCGACTACTTCTAACTTCTCGTTTAATAGCAGCTGTGCTGCTGCTTCCACGGCTAGTTGTAAATCTTTCTCAGTGTTTTTGTCGATGTTGATGCTTAGTAAGAGATTCCTACGACAAATAAATTGGAGCTCGGGAGTGCGATTGTGGAATCCTTTTATCTTTACCACATCACCAAGCCTGTATCGATATAAACCTGCATCTTACACGGTATATATTCAATCAAGTCAAAACGAATAACAACATAAG</genome_strand>
        <mrna_strand>TAAGATATGAAAAGTAACCAGCTTAAAATTCTGGGAACAAACATACATATAATTCAACTAAATGCAGTACTAAAATAGCTCTCAACAGCATTACTAGTCAATATTTGCAGCACAGAGAGATTTGTCGTACCGACACATCTCGGTGTTTTGAACTGGCTAACTGCTGCTCCTAATCCAACAAAATGATCTAAAATCTTATGAAACGTCCCTCTCTTCACTATCCGTAGCTCAAGGGCACCGATGGTTTTGACCTTCCGAGAGCTAACATAGCCTGCATCGACGAAAGATTTGTCTAAACAATTACAACATTCTTTCAAAATTTCCTCACTTGCCTTACCATTCAGTTCCCAGAAGATCACGTAGTGCCCTGGATCAGCTGATGTGTTTACGTTGCTAGAGAAATCGACTACTTCTAACTTCTCGTTTAATAACAGCTGTGCTGCTGCCTCCACGGCTAGTTGTAAATCTTTCTCGGTGTTTTTGTCGATGTTGATGCTCAGTAAGAGATTCCTACGACAAATAAACTGGAGTTCTGGAGTGCCATTGTAGAATCCTTTTATCTTTACCACATCACCGAGCCTGTATCGATATAAACCTGCATTTTACA-TGTGTATATTCAATCAAATCAAAACGAATAACAACATAAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E602539" ref_strand="+" ref_description="SGN-E602539 [55605]">
      <seq>acaaatcaaagtgtnttattaagatatgaaaagtaccagcttacaattctgggaacaaacatacatataattcaactaaatgcagtactaaaatagctctcaacagcattactagtcaatatttgcagcacagagagatttgtcgtaccgacacatctcggtgttttgaactggctaactgctgctcctaatccaacaaaatgatctaaaatcttatgaaacgtccctctcttcactatccgtagctcaaggggaccgatggttttgaccttccgagagctaacatagcctgcatcgacgaaagatttgtctaaacaattacaacattctttcaaaatttcctcacttgccttaccattcagttcccagaagatcacgtagtgccctggatcagctga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="135562" stop="134564"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="135262" g_stop="134863" g_length="400"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="398" r_length="398" r_score="0.950"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E602539" ref_strand="+">
        <total_alignment_score>0.950</total_alignment_score>
        <cumulative_length_of_scored_exons>400</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E602539" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="135262" e_stop="134863"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACAAATTCAGAGTGTATTATTAAGATATGAAAAGTAATCAGCTTACAATTCTGGGAACAAACATACATATAATTCAACTAAATGCAGTACTAAAATAGCTCTCAACAACATTACTAGTCAATATTTGCAGCACAGAGAGATTCGTTGTACCGACACATCTCGGAGTTTTGAACTGGCTAACTGCTGCTCCTAGTCCTACAAAATGATCTAAAATCTTATGAAATGTCCCTCTCTTCACTATCCGTAGCTCAAGGGCACCGATGGTTTTGACCTTCCGAGAGCTAACATAGCCAGCATCGACGAAAGATTTGTCCAAACAATTACAACATTCTTTCAGAATTTCCTCACTTGCCTCACCATTCAGTTCCCAGAAGATTACATAGTGCCCTGGATCAGCTGT</genome_strand>
        <mrna_strand>ACAAA-TCAAAGTGTNTTATTAAGATATGAAAAGT-ACCAGCTTACAATTCTGGGAACAAACATACATATAATTCAACTAAATGCAGTACTAAAATAGCTCTCAACAGCATTACTAGTCAATATTTGCAGCACAGAGAGATTTGTCGTACCGACACATCTCGGTGTTTTGAACTGGCTAACTGCTGCTCCTAATCCAACAAAATGATCTAAAATCTTATGAAACGTCCCTCTCTTCACTATCCGTAGCTCAAGGGGACCGATGGTTTTGACCTTCCGAGAGCTAACATAGCCTGCATCGACGAAAGATTTGTCTAAACAATTACAACATTCTTTCAAAATTTCCTCACTTGCCTTACCATTCAGTTCCCAGAAGATCACGTAGTGCCCTGGATCAGCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E612850" ref_strand="+" ref_description="SGN-E612850 [62617]">
      <seq>gaggaaattttgaaagaatgttgtaattgtttagacaaatctttcgtcgatgcaggctatgttagctctcggaaggtcaaaaccatcggtgcccttgagctacggattgtgaagagagggacgtttcataagattttagatcattttgtagggttaggagcagcagttagccagttcaaaacaccgagatgtgtcggtacgacgaatctctctgtgctgcaaatattgactagtaatgttgttgagagctattttagtactgcatttagttgaattataagtgtgtttgttcccagaaatgtaagctggttacttttcatatcttaataaaacactttgaatttgtacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="134617" stop="135567"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134917" g_stop="135274" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="358" r_length="358" r_score="0.941"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E612850" ref_strand="+">
        <total_alignment_score>0.941</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612850" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134917" e_stop="135274"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAGGAAATTCTGAAAGAATGTTGTAATTGTTTGGACAAATCTTTCGTCGATGCTGGCTATGTTAGCTCTCGGAAGGTCAAAACCATCGGTGCCCTTGAGCTACGGATAGTGAAGAGAGGGACATTTCATAAGATTTTAGATCATTTTGTAGGACTAGGAGCAGCAGTTAGCCAGTTCAAAACTCCGAGATGTGTCGGTACAACGAATCTCTCTGTGCTGCAAATATTGACTAGTAATGTTGTTGAGAGCTATTTTAGTACTGCATTTAGTTGAATTATATGTATGTTTGTTCCCAGAATTGTAAGCTGATTACTTTTCATATCTTAATAATACACTCTGAATTTGTACAAATTTTGTA</genome_strand>
        <mrna_strand>GAGGAAATTTTGAAAGAATGTTGTAATTGTTTAGACAAATCTTTCGTCGATGCAGGCTATGTTAGCTCTCGGAAGGTCAAAACCATCGGTGCCCTTGAGCTACGGATTGTGAAGAGAGGGACGTTTCATAAGATTTTAGATCATTTTGTAGGGTTAGGAGCAGCAGTTAGCCAGTTCAAAACACCGAGATGTGTCGGTACGACGAATCTCTCTGTGCTGCAAATATTGACTAGTAATGTTGTTGAGAGCTATTTTAGTACTGCATTTAGTTGAATTATAAGTGTGTTTGTTCCCAGAAATGTAAGCTGGTTACTTTTCATATCTTAATAAAACACTTTGAATTTGTACAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E369810" ref_strand="+" ref_description="SGN-E369810 [TUS-25-G23](-)">
      <seq>aaatctttggtcgatgctggctatgttagctctcggaaggtcaaaaccatcggtgcccttgagctacggatagtgaagagagggacatttcataagattttagatcattttgtaggactaggagcagcagttagccagttcaaaactccgagatgtgtcggtacaacgaatctctctgtgctgcaaatattgactagtaatgttgttgagagctattttagtactgcatttagttgaattatatgtatgtttgttcccagaaatgtaagctgattacttttcatatcttgataattcactctgaaaaaaaacaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="134653" stop="135557"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="134953" g_stop="135256" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.987"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="305" polyA_stop="326"/>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E369810" ref_strand="+">
        <total_alignment_score>0.987</total_alignment_score>
        <cumulative_length_of_scored_exons>304</cumulative_length_of_scored_exons>
        <coverage percentage="0.933" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E369810" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="134953" e_stop="135256"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCTTTCGTCGATGCTGGCTATGTTAGCTCTCGGAAGGTCAAAACCATCGGTGCCCTTGAGCTACGGATAGTGAAGAGAGGGACATTTCATAAGATTTTAGATCATTTTGTAGGACTAGGAGCAGCAGTTAGCCAGTTCAAAACTCCGAGATGTGTCGGTACAACGAATCTCTCTGTGCTGCAAATATTGACTAGTAATGTTGTTGAGAGCTATTTTAGTACTGCATTTAGTTGAATTATATGTATGTTTGTTCCCAGAATTGTAAGCTGATTACTTTTCATATCTTAATAATACACTCTGA</genome_strand>
        <mrna_strand>AAATCTTTGGTCGATGCTGGCTATGTTAGCTCTCGGAAGGTCAAAACCATCGGTGCCCTTGAGCTACGGATAGTGAAGAGAGGGACATTTCATAAGATTTTAGATCATTTTGTAGGACTAGGAGCAGCAGTTAGCCAGTTCAAAACTCCGAGATGTGTCGGTACAACGAATCTCTCTGTGCTGCAAATATTGACTAGTAATGTTGTTGAGAGCTATTTTAGTACTGCATTTAGTTGAATTATATGTATGTTTGTTCCCAGAAATGTAAGCTGATTACTTTTCATATCTTGATAATTCACTCTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E243101" ref_strand="+" ref_description="SGN-E243101 [cLEE-2-C1]">
      <seq>caaattacatatcctcaacaacaacacttcaacaaattacatatcctcaacaagaatagttcaacaaattatatatccgccataacaagctcaatattaatcaatcacaagttctgcagaaaggcaataagaagatcgagaaaatacgatatcaagttcactaatgataagtgtgtaatgcaatggaatgcaatgtcaagtataatgatgcatgtctgacctagtgatatacacccgctgtctctcagtccgggacccttgggggacatatctgtccatgcatctgtcgcggcgcacgacacgatcctcgataatagtaaccatcacggcgcgcgatacgttcctcgaaatatagtatccatcgcggcgcgcgatacgtccctcgaaatggtacatcctcttaagtacccattatttctcaatgcacataacacttgccacaaccaatgcctcagaataatgcagatgacaagttcacacatataatgaggagatgaccattttcataacatcctacagttcacaaccacacaaacatcaagttacatcaacaatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="171077" stop="145386"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="146282" g_stop="145904" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="377" r_length="377" r_score="0.921"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="145903" i_stop="145866" i_length="38">
            <donor d_prob="0.000" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="145865" g_stop="145686" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="557" r_length="180" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E243101" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>559</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E243101" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="146282" e_stop="145904"/>
          <exon e_start="145865" e_stop="145686"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAATTACATATCCTCAACAACAACACTTTAACAAATTACATATCCTCAACAACAATACTTCAAAAAATTACATATCCGCAATAACAAACTCAATATTGATCAATCATAAGTTCAACAGAAAGGCAATCAGAAGATCAACAAAACACGATATCAAGTTCACTAATGTTAAGTATGTGCATTACAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGCATCTGTCGCGGCGCACGACATGACCCTCGATAATAGTAACCATCGCGGCGCGCGATACATCCCTCGAAATATATTATCCATCGCGACGCGCGATACGTCCCTCGAAATATATTTTCCATCGCGGCGCACGATACGTCCCTCGAAATGTTACATCCTCTTAAGTACTCATTCTTTCTCAATGCACATAACACTTGTCACAACCAATGCCTCATAATAATGCAGATGACAAGTTCACACAAATAATGAGGAGATGACCATTTTCATAACATTGCACAATTCACAACCACACAAACATGAAATCACATCAACAATGA</genome_strand>
        <mrna_strand>CAAATTACATATCCTCAACAACAACACTTCAACAAATTACATATCCTCAACAAGAATAGTTCAACAAATTATATATCCGCCATAACAAGCTCAATATTAATCAATCACAAGTTCTGCAGAAAGGCAATAAGAAGATCGAGAAAATACGATATCAAGTTCACTAATGATAAG--TGTGTAATGCAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATATACACCCGCTGTCTCTCAGTCCGGGACCCTTGGGGGACATATCTGTCCATGCATCTGTCGCGGCGCACGACACGATCCTCGATAATAGTAACCATCACGGCGCGCGATACGTTCCTCGAAATATAGTATCCATCGCGGCGCGCGATAC......................................GTCCCTCGAAATGGTACATCCTCTTAAGTACCCATTATTTCTCAATGCACATAACACTTGCCACAACCAATGCCTCAGAATAATGCAGATGACAAGTTCACACATATAATGAGGAGATGACCATTTTCATAACATCCTACAGTTCACAACCACACAAACATCAAGTTACATCAACAATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E541821" ref_strand="-" ref_description="SGN-E541821 [TUS-62-N1](-)">
      <seq>ttttttttttgcagaaataaaatataagtaacttaattaaacccccaagacctgggtagtcacgtgtacaagcctctaaagtattacaagattcaaaagaaaaaaactcaagtctcaaatgaacttgtttctagaatagaacaagatcataattatggagaagaaagtctgctgagatggaaacagctacctcacaaatctccatgaagcctcggaaaagaagagactgacaagtacaacaaaaatccaggctcataacctacaaaaatttgtagaagcaaggggtgagtaccaaaccacacggtactcagcaagtaaacctctaaacataagctaaggggatgaaatacgggtactcctaccacccccaaccgaacctccacaaatacaacctgcattaaaatcaacccaacctaacagctcacaatttacatagcacatagctcaacaacaacacttaggcaaattacatatcctcaacaacaacacttcaacaaattacatatcctcaacaacaatacttcaacaaattacatatcctcaacaacaatacttcaacaaattacatatccgcaataacaagctcaatattgatcaatcacaagttccgcagaaaagcaatcaaaacatcagcgaaatacgatatcaagttcactaatggtaagtatgtgcaatgcaatggaatgcaatgtcaagtataatgatgcatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="171499" stop="145764"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="171182" g_stop="170739" g_length="444"/>
          <reference_exon_boundary r_type="cDNA" r_start="59" r_stop="502" r_length="444" r_score="0.944"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="170738" i_stop="146275" i_length="24464">
            <donor d_prob="0.900" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="146274" g_stop="146064" g_length="211"/>
          <reference_exon_boundary r_type="cDNA" r_start="503" r_stop="713" r_length="211" r_score="0.924"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="10" polyA_stop="1"/>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E541821" ref_strand="-">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="0.919" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E541821" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="171182" e_stop="170739"/>
          <exon e_start="146274" e_stop="146064"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCACGTGTACAAGCCTCTAAAGTATTACAATTGATTCAAAAG--AAAAACTCAAGTCTCAAATGAACTTGTTTCTAGAATAGAACAAGATCATAATTATGGAGAAGAAAGTCTGCCGAGATGGAAACAACTACCTCACAAATCTCCAAGAAACCTCGGAAAAGAAGAGAATGACAAGTACAACAAAAATCCAGGCTCATAACCTACAAAAAAATTGTAGTAGCAA-GGGTGAGTACCAAACCACACGGTACTCAGCAAGTAAATCTCTAAACACAAGCTAAGGGGATGAAATACGGGTACTCCTACCACCCCCAACCGAACCTCCACAACTACAACCTGCATTAAAATCAACCCAACCTAACAGCTCACAATTTACATAACACATAGCTCAATAACAACACTTAGATAAATTACATATCCTCAACAACAACACTTTCACAAATTACATATCCTCAACAACAATACTTCAACAAATTACATATCCGCAATAACAAACTCAATATTGATCAATCACAAGTTCAACAGAAAGGCAATCAGAAGATCAACAAAACACGATATCAAGTTCACTAATGTTAAGTATGTGCATTACAATGGAATGTAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATACACACCCGCTGTCACTCAGTCCGGGACCCATGGGAGACATATCTGTCCATGCATCTGTCGCGGCGCACGACACGACCTTCGATAATAGTAACCATCGCGGCGCGCGATACGTCCCTCGAAATATATTATCCCGGCGCGCGATACGTCCCTCGAAATATATTTTCCATCGCGGCACGCGATACGTCCCTCGAAATGGTACATCCTCTTAAGTACTCATTCTTTCTCAATGCACATAACACTTGTCACAACCAATGCCTCATAATAATGCAGATGACAAGTTCACACAAATAATGAGAAGATGACCATTTTCATAACATTGCACAGTTCACAACCACACAAACATGAAATCACATTAACAATGATTCAACAAGCCTTCAACCCTTTCTCAACACATCACACATAAACAATGATTCAACAAGCCTTCAACCCTTTCTCAACACATCACACATAAACAATTAATCACATTGCCTTTTGTTATCCCTTTTTTTTCATCATTAGAATTAATTAATGTGGATAAGTCAATCCATCACCAATCCTGTTACTCCCAAACATATACCACAAGGAAATACACGCATTTCATACAGTTAACAAGAGTTAAGAAATCAACTTACCTCATTTTATCGAACAATCACTTCGGGACTTTAGCCTTCCCCTTTCGTTGAACTTCCAACTCAAGGCAATCTATTCAAATAAATGACCACAATTAGATTCCAACTAACAATACTCATAATACTATATGTTTAACTTTGACCCCAAAAAAATCACCTAAGTTTATAATCAAGTTTTTCAACTCGATGTCAATTAACATGTCAACTCTCATATTTCTCAAATTCAAGCCTAGGGTTAAGTTATAATATCTCCAAGCACTACAACCCTAATAACTTTCATATATTATAATACACTCGATAATTAATTACATATCTCAATGTATTTAAAACTTGAATAATGATATAATATTGTACAATAGAAATTCGACCACGAATGATAAATCTGCAACTAACTTTTATCAGGAACTGTAACTATAGATATTATGCAGAAGTGAAAACCTTTGTAATTAATATCCCACCCATCATTCTCTTCCAATCATTGCCCTATAATCCTAGGAATAATTACGCAATCATCAACAATAGATTATTTCTCCAACTTTTTAATTACATCAACAATAACCAAAAATAGATAAAACGCCAAACCTATATTAGTTCATCGATTGAATATCAATATTTTATTATTTGCCCACTTATTTTTGTCCCCTTAAGACTCAATTCGAATAGAATACACCTAAGTGTTCACTATTTTCCTAGAAATTACGTACAAAACAACAATTATAAAAGCATAGTGAAAATACTTACCTGAAGTTAAAAGCATTCGCTGCTCATGATGTCGCTTAGGGTTTCTCCCTATTCTCTTTATTTTATCTTTTTTTTTTAAAAAAAATAATAATACTTATGTACTAAAAGTTATAAATTTAATTCACTTATTTTATTAAATATAGGCTAAACGGTATAAGGTGTTCAATAAATTATCACTTTAGCTCATTAAATATCGATTAAGTCATGCCCATCAATTAATTAACTCAAGTTAAATGAATAGTTCAAAATATTCAAAAATAAACTACCGGGTCATTACATTATCCACCACTAAAAATCATGTTCGTCCTCGAACATAAAGTAAAAGAAAGTAAAAAATTAAGGGATACCAAGAGCCTAATGTATGACCTTTAGAGTTGTGTTTCTCTCTCTAACTGAACTCATAACTAGGACTATTCCATCAAGATCAACTATCAAGAACTGAAATTTCGAATCAAAGTTTGAAAAATTTAATCAGAAGTGATTTGAATCAAGCCACAGACTAACCCATGGGACTCAACCTAAAGTGAGACTCGTTAGGCCATAGCACAATTATCATGATGAATATTTTCTCACGTAACCAAGGTAACCTTCTATATTAACATCTACTACAACCATAAGTGAACTTAAATCAATCACCACACACTCATAATACATAAATCATCACCAATCGTATCAAGATTTTCTTTTCATAACATAATCTTTTCACGAGCATAAGCTATAAAAATCTGATATTTAGACATCGGGTACTTATCAAGGGAGAATCAAACTTATCTTAACCAAAGAAGAACAACATCAAGTAAAACCCAACAAGCGGTACACTCTAGGATGCAAAACTTTTAACAACACTATTGGATAACTGTAAGTATTCACAGAAGCTCTTCTATAAGTACTCATAAGCAAGATCGTGCATGTAGAATCACTAGTATACTATAACTATCCCAAACAACACCAAATCTTCTATAACTGAATTGAACAAGTTTAACCAAGGAGGCCACCCTACCAAGAGAAAAATCACAGGATCAATACACCCGATCCACCACTAGGAACTCACCCATGGAAGTGAGAACACACATGAACTTAGAAAGTGAATCATACTCTAAACCCTATCAAAAATTAAGTAGGTGGGTCACATAAGAATATATTCAACCCCAAATCAAATAACACAATATACTTCCTCATAGCGCCCATAACAAACTTTTTCATTCATATGACTTCACCTCTTTAATTTTTAGGCACCTACAATCAATTAATCTGATCCTCATTATAGTCTTAGACATACTTGATTTATTAAATCTCAGAGTACTCCATTAAAGATACCAACAAACATCACAACCGCACAATTCATTTACCTTACTCTCAATCCGTCAGTAGTATCAACATATTCTTCGCAAACACATTGTAGCCCTTAAAAATTATCAAATATGGATTCATATCTTTTCATTTAAGCATAACATAACATATATAAGTCACACTCAAGATTGATACCACTAAATCCATATCTAAAAATACTATTCCATCGAAGTACCATAATTGAATCACACTCAATATCAACTTCATGCGATCTTTCACATACCATTTTTCAACTACTTTTCATACTATCATGTACCTCATGCGAAAACTCAAATAAATCATTGGTCTCCAATACTTATGTATACTATCATCTCATAATCTCTACTCACCATCAAATGCCTTGTAAAATATCATAATAGTTTATGTTATCTAAAAATAGTAGTTTCAATCTCCTCAAAATTCTCGATAACCCCGTATAATTGTAAGTGCAAGCCGTTGAACATTCATAAGTAACCCGTCATAATTTGAATAATCTAGCTCAACATAACCACATAGAATCTTTCACACCTAGTTATTGTCACTTAACCAAAACTCAATCTTTAGAAAAAAAAAATCAATTATAACTTCCTCGTAAGTTGGTATCGGAATAGTTCACATATCATAATCATATCTAACATCATAGGCAAATACCAATAAATCCTTTAACTACAAACCAATGGCTTATACAAGAGGTCTTATTGTTCCTTCGCCTTTCTTAAATTCTTTCCATGACAGAAATTTTAATAACTTTAACTCTTCAATACACCAAAAAAATTTCTCATTTTTGCTAACTCACTTACCAGTCTTATATTTTAGGCTGACAACCCATTATATTTGTACCTTATCTTATAAACCATAATATTACGTGAAACCCCCCTAAGATATAACAATAAAAAAATAATCAAATTTACTACTCAAATTATTTTAAGTCCTTCTAATGTTCAATACCCAGTGCAATCAATCATGTCTTACCCTTTAAATTCACACCTTAACAAAACCTATGTTACAAATGTTGACTCGATGAAAAACTCAAATTCTGATTTCAACTATGTAGCTCATTTCCATTATGTATCAACATTAGCTCATACCTTGAAGATTTTTATGAACTCACTTATCTTAGGATATCATTGATCACCTCTTCATCAACCATAACATATCTTTCGCTAAAAATTCTACCATACTCATTATCAAACTCAAAACCACAAATGAACTAAACATCATACTCGAGATGAACATCCATACACTCCTTTCAATTTTTATCCAATAGTTTTTAACCAATATGATGATCCTGTGACATTATATATTACCATAATCAAAGAAAAACATGTGAAATCACGTATTTCTAAATTCAATTCTCAACCCCTCTGAAGATACCTCTTTAACTCTTGCAGTTAAAGAAATTATTCTTATTCTCACCTCTTTTCGAATGCTACGCTATATCCCGCTAATTTATTTATTCAATTTTTCATTATGACTCTAGTCCTTTTAAATTCTACTCGAGCACTGTTCAACACCTCCTATAACTTTTCTTGCAACCCTCTACTCATCAAATAATAACAAATCATAACATTAGATACTCGCAAGTTGTCATTACCATGAAAATACGTTTAACCAACAATCTTTATCATATAGTTCACCTCAATCGTAATCCATCACGAACTCTTATTACCATCATGCTTAGTTAGCTCTAGTCATCACCACAAAGTCAACCTGTCATCGACATGACATCTCAAACCAAACTATATCAATCAAATTCAACAGACTAACTTAACTTTATACACATTTTCTTACTAAAATTTTCAATTTCCTTCACCCAAGTATACTCTTTGGAATTTCCTTTATATATAAGTTTGTCATTCCAATATTAATCCACTCGATTGGAGCTTATGATAAAATGCACATTTAGAATCTTAAGGATACACTTTATAACCTAAACTTTACATTTATATAATACCAAAGATCCACCACTAAAAGCTTCCTTATAAATAATGCTTAACACATCCATCCGTATTAATAAGCTAGTTGGTTTCTCAAATATGAATTTAACATTGAATCTCTTTATATGAGCATGTGATACAACTAATAACTCCTTATGTAGTTAGTATTCACGCTTAACAATTAACATATCTATTTTCATATACCACTAGTACCACATCGTGAAATCTGTTAAAAGTCCACCACTAAAACAGATCATCAGAAAGATCGTACCCAAATAGCCCACACATTTTTACCTACAAAATTATAAAATCATAGTGAAAATACTTACCTGAAGTTAAAAGCACTCGCTGATCATGATGTCGCTTAGGGTTTCTCCCTGTTCTCTTTATTTTATCTTCTTTTTTTTCTAAATTAATAATACTTATGTACTAAAAGTTATAAATTTAATTCACTTATTTTATTAAATATAGGCTAAACGGTATGAGGTCTTCAATAAATTATCACTTTAGCCCATTAACTATCGGTTAAGTCATATTCATCAATTAATTAACTCAAGTTAAATGAATAGTTCAAAATATTCAAAAATAAACTTCACTTTTGAAAATAAAAGAATAAAAAATACCTTCATTAATTCTTCAAATCTAACCTTCACTTTTGAAAAATTAGAGTCTCGTGCTGATAACGTGTTATAAAACTATAGAATAAGAAGAAGAAACTAAAGAGAAAAGAAGAGAAGACTTGTTATTTCTCTGAATGAATCCATTTACAATGAAGAGGAACACTCTATTTATAGGAGAAATCTAACTTGATTCCCAAGTAGAACTCTTTAACCATATCCTAAAAAAGACTCCAGATGATAGACATTCACTATAATACAAATACTTTATAAAAATTTAACTAATTTTTTCGACTATATTGTTATTTATTTGTTGTATTTGAAAAAGCAAATAAGGCATGTAAGATAAATTTTATACCAAAATGAGTGAAAAATAAATATACTCATCAAAATAATAAATAAAAGAATATTTTTGTTAATAATAAATTCAAATTATTTTTCGCTCTTGTTAGAACAAAACGAAATAGTAGCAATAAATTGCATAATTGAGGAATATTTCTATTTTTAAATCATATTCCCATAAATTTATTAAAAGATTAGTAAACTCCACTAAATTAATTATTAAATTGTTTTGAACATTTCAAGAGATTCAAATTAAAGATTTATGAGGTACACAAAATCATATATTTAATGAAAGTGATTGATATACCGTGATTTTACGATATTATTAATACTTTTTCCTCAAGTTTAGTGTGTCCAAAAGCCTTTTTTGTGCTAATTTTTGTGTAAGTTTCTCTTTATTTGCAGGAAATTTGTCTAAAAGAGGAATGCGGAGATTTTTGAGCGAGAAATACAGAAAAGTACCACCTACGGAGCTTGTGACGGTTCATCGTGCCCGTGACGGTCCGTAGGTGGCATCGTAGTACAGCTGCTCAAGGAAGATGGGGAAGTCTGACCAAGTGTGGGGTTACGGAGTGCGTGACGGACCGTCGTAGCCATGACGGTCCGTCCTGCTGGTTCGTCATGAAGTTCAGAAAAGTACTCCCAGTACCCAAATTCCAAGAGTTTAAGTGTTTTGGAACGGAGATCCTCGACGGACCGTTTTGCCTGTGACGATCCGTCATATCTGCCGTCGAGGATAATGAAGAGAGCAGAAGAAAAAATTGCACAAGTATGGGATGACGGAGTCCATGACGGTCCGTCATGACCACGACAATCCGTCGCGAGGTCCATCGAGCCAGTCGCGTTTTGACAGATTTCCAGCAAATAAAGTCCTTATGTAATTAGGTTTTTATTTTTTATAAATAGTTCGAAAAACCTCGTTTTGGAGGTTAGACTCTGGATTATTTGGTTAGGCCTTTGATTATTGTGAGACTCTTGAATATTTTGAGACTCTTGTAATTGATTGTTGGTGATTTTTGTTGATTAATCAAGCAAACTTTCAGATTTTACTCTTTCTCATTGAAGTAAGTACATGAATTCTTATACCATATATTTGAATATTGTGATTATGATTTATGACTATGGGTAACTAAACTCCATAACTAGGGTTGTGGGAACCATAGGCGAATAATGAGGTAAAACCTAACTAAAATAACAATTCTAAAATAGTGTCTTGCATGTATTGATAATTCTTTCGCTTAGAAGTCTTTTTAACGGATGGCCAACGTTAGAACTCGTCTTAATGCTACTTGTCGGACCAAGGAGGTACATAATAGGAAAAGAATTATCAACATAGATTTTGTGTATACTATCTAATCTGCTAGTATTGATTGGTACGAGGTAATAACTTAGTCAAATATCGAATATGATGCTTAATATGAGGTAAAGATAAGGGTTAGTACAGCAACACACGTAGCCGGACCAAGGTGCGGAGTGAAATTTTCTAGATGTCGTACCAAGAATTTAGAAATACATAACTTATCACTTTGCATGCAAGATACTAGGAAAGAATTGTAATAGTTAGAATTATCAAGTTATGAACCTGTGGGGAACATGTAAACCCTAGTTACTTTGACTAATTGATTACACATTCAAAGCTGTTAGTTGTCTCCTTTAATTTCGTAGTTATTTTCATTTATTTAGAAATAGAAAACCCACCTTTTATCATTTTTGCTTTCCAAGGAAGTAACTGATTGAACAATAGTAATAATAGATTGAAGTTAAGTCTAAACTATTTTCCTCGTGGGAACGATTTCAACCTCATTAGTTGGGTTATTTACTTGACATGACCGCTTTACTTCTTATTTTAGAAGTAAGTTTGAGCGTATCAAATTTTGGTGCCGCTGCCGGGGAAAGTAGCTTTTAGATTAACTTAAACTTATTACTATAGTTTAGTTGATATTTTTTTGATTTTACTTTGTTTTATTGTTTTTGATTCGTGCAGAACCACCTTCCTTGTATGCCAAATACACAGAGAGGAAGAGAACCCTTGTTTCCCTACGATCACAAATTAGAGTGTACACTACGCAACATGAATCGAAACTTGAGAATTAATGATGATGATCCAAACCAGAACATCCCAGCTCCGGTTGATGTTCATGGTCAGTTGTAACCCGATGCTCCGGGTGAACACCAACAGAGGGGAAAAAATCCCGCTTCACGGCCCTAAGCATACTACAGAGGCTATGACAACGTAGCAGACTCCGATGGGCCACTTGTCTTGCCTCCTCTACCACCAGGCCACGCCTTTATGGTAACTAGTAGCCTGATGCAAATTCTCACTACCAGAGGTTTGTTTTCAAGGATACCTTCTGAGGATCCACATTCCCATATAGCTAAGGTAAGGACAATGTGTAAAAGCTGTGTAGGGAGGCCTCACTTGTACTTGGATGTAATAGGGCTTAGAGTGTTTCCTCTCTCACTGACGGAAGAGGCTGCTATATGGTTCACTGAGCTCCCTTACAACTCAATTTTCACTTGGAACCAACTAAGGGATGTTTTCTTAGCACGCTACTATCCGGTCTCCAAGAAACTAAACCGCAAAGACAGAGTGAACAACTTTGTGGCACTACCAGGAGAGTCAGTTAGTAGTTCTTGGGATAGATTCACCTCGTTTTGGAGAAGTGTCCCAAATCACCATATATATGATGAGTCACTGAAGGAATACTTCTATCGGGGAAAAGATGATAATAATAAAGCGGTGTTAGACACTATAGCAGGTGGATCTTATGGGAAGTGTCCTTATGCTGAGATTGCTGAAAAATTAGAGAAAATCTCCCGGAATAATAAAGCTTGGAGTACTAGGAAATCAGATACCGGGAGAAATACCTTCACGTTGCAATCCACTCACAACCCAGCCATAGATGAGATTCGTGAAGAAATGGCTCAGATGAGAATTGAGCTTGGGTTGGTACTAAAACATATCACTGGGGGTGCAGAAAAGATAAATGCAGTTAACTACTTGTCTAAACCACCACCAACTAATGATGAATGTTATTATGAGGAGGATTCCTATGAAGTAAATGAGCAGATGGGGGGTTTCCGACCGAGTTCCCAAGGCTCAAATCAGGATAATTGGCGCCAAGGTCAAGGGAACCAAGGTCGGATCTATGGTAACTATAACCGTGAGGACCATTATGTCCGATATGGAAACTACAACCGCAACAACAACTTCAAAAGGGTTAACTACGGTAACAGAAATGATAGGAATGGGCCCTATGTCCCTCCTCAAAATCAAGAAGTTACTCCTAGGGATGGTGGAGGTAGTATGACGCGAGTTGAGGATATGTTGCACAAAATAATAAGGAGGTTCGATGTTAGTGATGAGCACATTAAAGAGTTAAGGTATGATTTAGCAGGTATTCAGCAAAAAGTTGATATATATGCAATAACGATTAAGCAGATCGAGTTTCAAATGGCGCAATTATCTGCGACTGTGAACACACGGCAACCGGGCACCCTTTCTAGCAACACTGTCCAAAATCCGAAAAATGATGCACACTGTATGACAATCACTACTCGGGGTGGTAAGCAAACCATTGACCCACGTATGCCGTCTAATGAGGAAAAAGTGAGAAAGGATGATAATAAGGTTGTAAAGGGTAGTGGTGAAGCAAAAGAGAGCACTGGAAAAGATGCAGAAGTCCCTATGAAGGTAATTCCTATGCCTAGACCACCACCACCCTTCCCTCAGAGATTAGTGAAAAAGACTGAGGATGGTAAATATCGCCGTTTTATAACAATGCTGAAACAGATTTTTATCAATGTCCCTTTGGTAGAAGCTCTAGAACAAATGCCCGGTTATGCCAAGTTTATGAAAGATCTGGTTACAAAGAAAAGATCGGTCACTTTCGAGGATGATGATAGAATGCAGCATTCTAGTGCTATTGCTACAAGATCTCTCGTACAAAAGAAAGAAGATCCGGGTGCGTTCACTATTCCTTGTACAGTCGGGTCATTACATTTTGCGAAAGCATTATGTGATCTGGGGGCAAGCGTAAATCTCATGCCCCTCTCGATTTACAAGAAGTTGGGTTTGGTTGACCGAAACCCCACTGCGATGTGGCTACTGATGGCTGATCGAACAGTGAAAAGGCCTATAGGGATACTCCACGATGTGCTAGTAAAAGTGGAGTCGTTCATATTTCTGGCAGATTTTGTTATTCATGATTGTGTACTCGATTTTGAAGTGCCTATTATTCTTGGGAGGTCATTCCTTGCAACAGGTAGAGCCTTAGTTTATATGGAAAAGAGGCAGATGAAATTTCGATTGAACAATGAAGAAGCGACCTTTAACATTCGTAGATCCATGAGGCAAAGTGGTGAGCTCCAATCGGTATCCTCCATATCACACAAAGAAACGATGAAGAAGGAGAATCAACAAAAAAGTGAAAATCAAGAGTTTATGGTTGGCGATTTGGGGCTTTTAGACAGTTCAAGGTTGCATTGGCTTCCGAGCAAGCTCAATTCCAAACGGACTAGCCCTTACTTGATTACCCAAGTATTCCCTCATGGAGCAGTTGAGTTAAAAACCAAGGAGGGAGTGCGGTTTAAGGTGAATAGAGAACGAATAAAACTCTATTTTGGGCATACTGCATCGGTGAATGAAGTGATATAGGCATACCATCTTGATGAAGGCTGAGTAATCAAGTGTCCTCAGTCGTGCCGCGACGTTAAATCAGGAGCTTGTTGGGAGGCAACCCAATACTTATAGTTTTTCTTTTCTTCTAGTAATGGTAGCATTTTCTACTAATGAGTTTTAAATTTGCAGCACAACACCTGGAAATTCTACAGAAAATCACTCTGCAATAGTCACCAACAGACATATGCGACGGACCGTCCTACACAACCGTTCTGGTTGTTAGAGACCCTATTCTTAAGGGTCTCTTACGTTTTCTAAGTGTCCTCCAACGGACATCTACGACGGACCGTCATACTCTCGATGGTACGACCTGCATAACCGTCATGACGGTTAGAGACCTCTCTCCTAAGGGTCTCCATTTTTTTAAGTGTCCCACGACAAACATCGACGACGGACCGTCATAATCACAATGGTCCGTGCTGATTGAGGCGCTTTGCGCTCCAGGTTTGCTTCACCTACCCCTCTTGTATTTCAATTTTTTTATGCATTGGGGACAATTGCATGTCCTTTAGTTGGGGGTGGGGTAAATGGAAAGTGAGTGCTAGGGTGAAGTCTGAGAAGCCCAATTCACACTATCCTCTTTTGGGGTTTTCTTGCCTGTGTTATTTTTCCCTAAGAGACTGATTACTTTTTCTGTTGAACCGGCTTGTGTTGTGTACATAGTTTAACTCTGAAACATGATGGCTAAACTAATATCCTAATAAAATGGAAAATGATGCATTAATGTGTGGCTCTAAGCATGACATAGAGGTACACCACCGCATGACCCTAAGTCTAAAATTCGAACTAGGCGTCTGATAATCTGGTAGAGTAATGAGATGTCAAGTGAGTGTGAGGAAGATTTGGATAGTCCACTATTTGTACTGAGCTAGAACTTGCCTGGTTAGTCCTGCTAAAAGTAAGTTGTAATAGACAATTAGGAAAGGATCATAGTCCCTTATTTAATATAGCCCATTTTTAGCCTAAATAAAAGAAAACTAAATGAAATTTATCCTTCTTTGATCCAAATGATTTGAGCTTAAACTAGATCTTTCTTTTTCACCCTAACTGATCTTTTCTGAGAATAATGTGTTGTCCCTGGTCCCTCTTTGGACATGTGCACCTCAGCTTATGCCAAAAGCATAAGTTGAGGGTGGCTAATGCAGTAAAAAAACTTTTTTTATGGCTTTGACCCAACTTTGGGTATTATGTACTTTGACTCATGGCAAAGCCATGAGTTGAGGGTGGCTATTATGAGGAATGCTATGGAAAGTGGGGTTGAAAGAACAAAGAGAAAGAAAGAACAAAAGTAAAGTGACTCAAGAATTAGTTGAAAGAAAAGTAAAGAAAAAAAATATACAAGAAATACAAGCAAGAAAAGAAGAGAGTCATTTACACAAATGAAGAAAAAAGGGAAAACAGCAAGGTAAAAGAATATGAGAAACTAGGCAAAATAAAATGATAGAAAATGGTATGTTTAGCCGATATGTCAAGGAGGGCAAAAAGTCACTAAAGTATACCTTAATATACCCTACCTGACCCTGATCCTATGTTACAAGCTAAGAAAGTCCTATCGTGATCCTAAGAGTTGTATAGCGAACTCAAAGCCGTGAAAATAAGGGCAAGCTTATGGCAATACATATGAATGAGTGTGAATTTGTTCTAAGAGTGAGTGTTGAAAAGTAATCCTTATACTCAAACTGGAATCATTGTATGAAAAATGAGGATTTTGTTTTAAAGTAAGGACACTAGTTGCAATACCATAAATATTAGCACCTCGATGAGAAATCGAAGAGGATAGGTGTTAGTGCATGGTGAGTCTGTATTATGGTCTGATTCCACATAATTCAAGCCTAATAGTGATAGCATGCATAAATATGATGAGATTGATCGGGATTGATAGCCAAATGATTGCGAAAGATAAAACATTGATACTATTGTACAAAGATTTTGTATTGAGTCATAGTGCGTCGGTCGATGACAAACAACGAATTTAAGTTGAGGGTGTTGATATACCGTGGTTTCACGGTATTATTAATACTTTTTCCTTAAGTTTAGTGTGTTCAAAAGACTTTTTGTGTTAATTCTTATGTAAGTTTCTCTTTATTTGCAGGAAATCTGTCTAAAAGAGGAATGCAGAGGTTTTTGAGCGAGAAATACAGAAAAGTACCACATACGGAGCTTGTGACAGTTCGTCGTGCATATGACGGTCCGTAGGTGGCATCGTAGTGCAGCTGTTGAAGGAAGATGGGGAAGTCTGACCAAGTGTGGGGTTATGGAGTGCGTGACTGACCGTCGTAGCCATGACGGTCCGTCCTGCTGGTTCATCATGAAGTTCAGAAAAGTATTCCTAGTACCCAAATTCCAAGTGTTTAAGTGTTTTGGAACGGAGATCCTCGACGGACTGTTGTGCCTGTGACGATCTGTCATATCTGTCGTCAAGGATAATGAAGAGAGTAGCAGAAGAAATTGCACAAGTATGAGACGACGGAGTCCATGACGGTCCGTCGTGACCACGACGATCCGTCGCGAGGTCCATCGAGCCAGCCGCGTTTTGACAGATTTCCAGCAAATAGTCTTTATGTAATTAGGTTTTTATTTTTTATAAATAGTTCGAAAAACCTTGTTTTAGAGGTTAGACTCTGGATTATTTGGTTAGGCCTTTGATTATTGTGAGACTCTTGAATATTTTGAGACTCTTGTAATTGATTGTTGGTGATTTTTGTTGATTAATCAAGGAAACTTTCAGAATTCACGGCAAATTATATTACCTGTTCCTAAAGGCAAATGAAGTCTTGAATATTTGCACGGTGGATTCCATCAATTCTTCATTGAACGGTACAAATTTTGGCTTTCCTCGAGTTGTACCAGAACTGCAGTTCAACAATTATCATCAAACTTTTTGTTCTTCAACTTCTAAAAATAGTGGTAGTAAAATAAATACCAATTTTTAAGCCCCATAAAAACAATTGAAGAAAAAATAAAATCATGTTTCTTTTTTTTATTTTCTATTCCTCATAATATAAGAAAAGATGAAAAATAATTACGCCTCAATCCCAAGTTGAAGTAGTCATGATAGAACAAACATATTCCTTTGATCTCATATTGGTTGTTGTATTTCGTTTCTCAAATATCAATTTGTATAAACTCTGATTGGTACTGTAAAATATTTTTTCTAATCAGATTAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTGCGTATCTAAATTGTAAATACAAAACATTGAGTTGATCTATATAATGTAACTTCGAAAGTGAGTCAAATTAACTTTCAAAAAGAAAAACATGATAACTAATTCATAATAGCAGGAGTAATTAATATTATTTAAAATTCTAAATGTCTAAAAGGCATTCTTTAAAGGAATCAATAAATTTAAATTGAAATGTTTTGTTATCAATTAAGTTTGAGTCAGAATTTCAAAAATAAACTTTTGGAAAGTTGTTATTTATTTGGATGGAGTATTTACTACAAAAGATGTAGTTTATATATTAATTTCGAGGAGTTTTGATGAAAGATTTGAGTTAATTTTTGTTAGAATTTCATATTAAAATTCAAAAGAGATAAAAGAATGATTCTATTTGTTTTTATATTTTAAGTATATGTTATTTGCATATACAATATATTATTGTACATAAAATAAGTGAAATACATGACGTTCTCTTAAAGTTGACATTAATTTTTACTTAAACAGTTTGAGTAGGTTTTGTTCATTTTAAACACTTTAAGTAGGACTCTTGTTGTGTTATTTTGATTCTTTTTTAACAATTAGCTAAAATTACAAAGTATTTGTAATTCACTAGCTAATTACGTGATGACTAATTAGAAGTTAACATGTGTCATTTTATTATAAAAATAATAATTTTAAAATAAATTCTTTAAAAAAACTAAATGCATTACTATTTTCTACCACTCACACCTCTTCCTTACATCACCCCACCCCCATTCCATCGGCCTTACCACCATCCTTTTTGTCTCCCTTACCCTCCTCATCATTTTTTAAAAAAAAATCATTAAATTTTAGTCTTTCTTTTTTCTTTTCTCATTGTAAATTTGATTTTGAGAGTTATTTTATCGATAGTGAGGTGAGGTTCTAACAAATATGACATTGTTCTTATATTTATTTTATTTTTAAAAAAAAAGTATCTTTTGTTCTAATAAATGTTTTCAAATTTAGTGTGATGATTTTTTAAATTTTTGTTCTTGTAAATATTTTTAAAAATAGTGTAATAATTTTTTTATTTTATTTTTTCATATTTTATAAGGTTATTCATCATGATTTTTCATGATGGAAGGTAAAATAACTGGTAGGAATGAAGAGTGAAGAAGAAGGAAAAAATATTTAAGAATTCAAAAAAAAACACTCCTCACTCACGTGTTCAAAGTGAATGCAACGCACTCAAAGTAGCAAGTCAGTAGAATATGTCGAAATGATACAGCAGGACTCAACATAAGGGATCTAAAATAAACTAAATTTAGTTAATATGTCTAAGTGAAAATTAGTATCAACTTTAGAAAGCTACCAATAAATTTAGCCTATAAAATAACATACACATAAATATAATTATACGGGAATTGTAAAATATAACCTCAACGAGATAGTAGTAATAGGCTTTCTAGTTAGAATAGGAGTAAGATCACCATCAACAATTCTACGAATGTATGACTCCAAATCCTTATGTGTAACAAGAGGAACACAATTCTTGAAAGAAACTTGATCTGTTTTCCCATTAAGACCCCATTGTTGCAAATATTTTGTCCAGACCTCTAGGTTAAAGATGCACGAGTACTTACCACTACATCACAATACTTGTTTAAATTTAAATGCTTTAGTATGATTATTTATTTTTCTAATAAATTTACTAATTGATTGTTAATTTATTGGTAATATATCATTCAAGTTCAATGTTAGCTTAGTAATTGATTGATAATATTTTCAAAATATTATTAACTGAATAATTATTCAATATTTAAAATATTTATTAATTTATTACATCTAAAAATCTAAGAACACGAATATAAATCAAAAAATATTAATCAATTTTATTAGTCATATTTGAATGAAACAATGCAAAATCAATGATAACAAGTTAAATTAATCTCATTATGACACATATAATTATATCAAAAATTTAATTTGAGCACGTTTACAAAAAATATTGACAAAGTATAAATTTTGGCCAAAAGTTAAAGCGCCAAACAACACAAACTTAAAATGGAAGTCTCACAACCTGAAACAATCATCTTGTTAGATATAAAAATGATCTTTCGAATCTAATCAAACTGAAAGAATTTCATCAGAGCACATTTACAACAAATGCTAAGAAAAATTAAATTTTTGCCAAAAGTTAAAAGTTAAATCGCCTAACCGTACAAACTGAATATGAAGACCTCAAAATCCAAATCAGTCATCCTATAAAGAGAAAAGTGATCTTCCATATCCAACCGAGCTGACGAAATTCAAATTTGAGCATGTTTCCCAAAAAAATTGACCTAATTCAAATTTTAGCCAAAAGTTAAAGGTTAAAACGCTTAACAACAAAATTGAAAATAAGTCTCAAATCCCGAACTAACCATCTTATGAGATCAAAATTGAACTTATATGGCTAACTGCAGTGACAAAATTTCAATTCGAGCACGATTACGAAAAATATTGACTAAAGTGAAATTTTGGCCTAAACTTAAAAGCTAAAAGGCCAAACGACATAAACTAAAAATGGAAGCCTCAAAATACAAACCTTCTATCTTATTACATCAAAAATAATTTTTCGCATCTAATGTCTTATGTGAGTACGTTATCATATATATTGACCAAGTTAATTTTTTGCTAAAATTTATATGTTAAACACCTAATGGAACACAGTAAAAATGAAAGCCTCAAAATTCAAATCAACCATCCTACTAGATAAAAAATGACCTTAACCCTAACGAATTCTCATCTGAGCATGTTCACAAAAATATTGACCAAAGTCAAATTTTGGCCTAAACATAAATTTAAAACACATAACGACACAAACAAAAATGAAAGCCTCAAAACATGAATCAACCTTCCCGTCAGATAAGAAATGACCTTTCGAAACTAATGACACTGACGGAGTTATAATTTGAGCACATTTACCAAAAATATTCAACAAAGTAAAGTTTATGTTAAAAGTTAAAACGCCTAATGACAAAAATTAAATATGAAAGCCTTACCCCTAGACGTTGATTTACCAAAAATATTAACTTCAATTGGTAATTTACCAACTATTAAAATATGAGTTAGTAATATATACTTTATCATTAAATTTTATCAGAGTTGGTAATAGTTACTATTCAACCAAACATTCATATGTAATATTACCAACTAATAATTAATATGTTGGTAAATTTTACCAATGGATTAGTGATCGATATATTACAACTATTTTAATGATGTTAGTAATTTACTAACTACGATCTTTATTCATCGGCAAAATTTTCAACTAATTTGATATTGGTTGACAAGTTTACCAACAAATTGCATTTCGTTACTAATTTACAAACACATTTATATTTGGTTGCTAAATTTAGCAACACAATCTTGTCATTGATAAATGTTTGGTTAGTAATTCATTGGTAATATGTTAATAAATTATATAAATAATTTTGTCAAATTTACCAACCGATATATACTTCGTTCATAATATTACCAACAAAAGATGTGCGTTAGTAATATTTCTGTTGGTAATCCATTGATAAAATGTTGCTAAATTTGGCGCCATTTTTTCCCACACCGTATCTACCAACTAAGATACTTAATTAGTAAAATTTATGTTGGTAATCTGTTAGAATTTGTTGTTAAGTTTTATTATATTATTCGGTTAGAAATATGTTGGTAATTTGTTAGTAGAATACTAACCAACTTAAGTTGTTTGTAAAATTTGTTGGAAATAAGAGATTTTTTTGTAGTGATTAATTTTAGAATTCTTATAACAAAATTTGGTGTCAATACATAGATTCAACGTTTTTATCTACGACCATTTTGAACAACTCATACCCATTGACAAGTGAACTGATCCAAGCTTTCTTTATTTTGGTGGTTCAACCATACTTCACTTCTAGTTTGTCCCACATTTCTTCCGCAGTTTCACAGATTGATATTTTATTATATTCTGCTCCACTCATTGCACAATATAACAAACTTATAACTCTAACATTAGTTTGGATTACCTCTTGTTATTCTTTAGTGATGTCAAATGATTCAAGATCATATGACTTTTTGCTGCCATTTTTTCCAATTAATCTAGGAAGAGACTTTGGATCCTTCTTGATGACAATTCATGCTTGATGATTTGTTGAGGACACAAATATTCTAAATATATTTTTTCAATGAGAGTAATGGTATCCATTGAAGTATGGTCGGTGTGAGGAGTGTCCGTCTTGAAGTAACGTGCCAGAAATTTGATTGTTTGTCATTGGATTTTTGAACCTATGTGGTTAAACATTGACTTAGTGAGACCTACTCTGATACCGATTGAAAGTCAAGAGGGGGTGAATTAAAATTTCGCTTTAGTCGACTTTCTTTAATGGTCACTCACCTGCATGTTAGTAGAATTGATAAATAGTAATTATAACTTGCAGTATGTAAATAACATATAGTGTTTTTATACTAGTTCAAATCACCGATGTGGTGCGTAGTCCAATCCCCTTGGGTTACAAGGATTTCCTTAAGAGTTTGTTGAGAACTTAGGTGTTACGGAATGTTACAATTAAGAGCCCATCTGATATGAAAATCATTTCTTCTTTTTCGACACAACCTCTACCTGTATAACCTACACTCAAATCATTCTTTCTTTTTTCTTTTCAATTTTTCAGTCAAGTGAGTACAAAGTTTATGAAAATTAAAAGAAGATTACGATGTAAGTTCACGTGAAGTGTGTACTTCCCATCTAAGTCGGAGAGGGTATATCTATATATGAATAGACTTTTGCTTTTGTAAGGAAAACCTAAGAGAGTTATACTTCAATTAAGGATTTGAGGAACCCCTTGATTAGGCGATTTGCTGATCTATGTCCATATTAGATATGTACAAGGTAAATCTCATTCCTTCCTTCTTGACAGATATGATTCAATTTTGTGCTTTGGCTGAAGGATTGATCTTAAATATTTGGCTTGATATGATTTCCTTTCTTCTTTTGATGGCTTGGCTCTATTCTTGGTTTGATTGGTGATTTCTTGATCTTGTCCTGTTTTATTTGATTGAACTTTAGGTCATCTGTTTATGATTTGTTGGTTCCTTTGATTATACCTTTCCTTAATGTAGTAATTGCAAATATAAAACTATATTGTTTTCCATGTGAGTGTTTGCTTGGATCATTTTCTTACTGGATCTCTATGCCTTTATGTAGTAATTGTAAGGATCATAATATATTGCTTTCCATGTGGGTATTTGCTTGGATAGTTTCCTAATTGGATCTCCACGTCTATTAAAATTATAAGTAGTTTTTTAAGTGTCATCTATCAGAATTTACATAACATTAAAAAACTAACACTATTTTAGTAAAAAAAACAAAAATCAAAATTGTGACTTTCATTGTGTGTGGCCTAATTTTTTGAAAATATAATCATGTGTTTGTGTTGGCACTGATCTCTTTTTGAAGTTTATACTTTACACTCTAGTTCATCTCTAATTTAAAATTCTAAATTCGCCCTTAAACATATCTGATTTCTCTGACTTATGAGGCTAAGGGCCTATCAATTCTATGGTGAAAATAGCAAACTCAATTTTTCTCATCATTACAACAAATAGGTTGAGCGCCCGTTTTGATTGACTTTAAAAAGTAACTTTTAAAAAATACTTTTGAAAGTGCTGAAACTTATTTTTAAAATAAATAATTATGTGTTTGGATAAAAGTGTTGCAGTAACAAAAAAAATTGTTTATGTGTTTGACAAATAAGTGCTAATAAACATTTTTTTAATCAAAATGTCTGAAATACCCTTAAAACTGTTACCACGATAAAAAATTGATTTATTTAAGGTTTTTATCCTTTAAAAAAATTAAAAAAAAATTAATATAAATTTTACATCCATAATTAATAATATTTCCTATCATTCACATATTTTTTATCATCACAAATTAATAATAATAATAATAATAATAATAATAATAGTAATAATAATAATAATAATAATAATATATAACAATAATAATATAATATAATAATAATAACAACAACAACAACAACAACAACAACAACAATAATAATAATAATATAAGAATTAAGGGCAAAAAGGTAATATTATTTGGTCAACATAAAATGACTTTTAAGTTGAAAAAAAACACCTCTCACCGAAATTTAGCTTTTGGCTTAAAATAAGTCATTGACTTAAATAAGTCACTTTGATATTTGCAAAACACTCAAATAAGTCAAAAAGTGATTTTTAAGTAGTTTGACCAACTTTTAAGCTCATCCAAACTCATTTTAGGTGTTTTTAATCCAAAATAGTTAAACAGTTTTAAAGTATTTGAATAAAATTAAAAATTACTTATAATTATTTTAAAGCCCAAAATAACAAAAATTAGTCAAAAATCATAAGTTAGAATCCTAACTAATGATTTTTGACTTATAAGTCATAAGCCTAAGTCAATCTAAAGAGACCCTGAAAATTCCAGACCCATGAACAATGTCAGAGTACCTCACACAACTATGACATGATATGCCTCAACCATCATAAAGTATTTTTATTTTTCTCACACGTGTTTTTATTTTATTTCTTGATTAAACAACTAATTTGAATTTTAAAATTCTTTCTTATAAATCTTGTTACTTATCAGTATTTGAGTTTCTTATTCGTATTTAATTTTTTCTTACATTTTTTATTTAGTGTAAAAATGAGCAAAAAAAATAAAAAGGTATGAATTAAAAATAAATAAGGGAAAAAGTTTTTAACTAATTTTTTCGGCTATATTGTTATTTATTTGTTGTATCTGAAAAAGTAAATGAGGCATGTAAGATAAATTTTATAGCAAAATGAGTGAAAAATAAATAGAATCGTCAAAATAATAAATAAAAACTATTTTTGTAAAAAAATTAAATTATTTTTCGCTCTAGTTAGCCCAAAATGATATATTTATGTCATTTGTGTAATTGTAGGACTATATATAAATTATTTTTTATAATAAGGGCTATGTGAGCTCCAAATTGCGAAATTGAGGAATATTTCTATTTCAAAATCATATTCCCATAAATTTATTGAAAGATCAGTAAACCCCACTAAATTAATTATTATAAACTTTTTTTCTGGACATTTCAAGACATTCAAATTAAAGATTTATGAGATACACAAAATCATATATCTAATGAAAGTGATAGGTTACGAATATTTGTCTTTACCTTGAATTCTCATTGACCTACAAACATGTGTATGGAATTAGTTCCCATAATTTAGAAGTTTTGCTCCAATTTCAGTAAATGGAGATATTAGTTTTTGCTTTTGAGAAAAGATTATAAGTTAGGGCATGTTGTATGTGTTTAAAGTTTCGTTTCTCATATACTGTAAACAGGAATGAATAAATAATAAAAGAATAATATTATTTGTATTTAAATTTATGCAAAGGTTACAATCTTTATAAAATCTTTAATAAAAGATGTAATTTTCTGATTTTTCTCTTCATGGATATGTTGTTGATTTGACGGAATACTTGCAACTCAATACTTGAAGCGAAAACTTCTTTGCATGAGGAAAACAGCTCAACACTTGGAGCAAAGACTTGCGGAAGCCGACTCAACATTTGGAGCAAAAACTTCTTTGTATACAGAAGAAACTACGTATTTTTGTATGTATGTATCTCTGTGTATATCCTCTTTTGGTCAGAAGAAGACCTCTTTATATAGGCTTGAATTAGGACTTCAGGGATATTTTGGTTCGAGCAACTTTGATCCCTAAGCCTGAAGAACACATCTTGTCAACTTAATAGACTTGTTCCCAATGTAATTTGAACTTGATTTAAGTTATATAATTTTGACTTAAATATTAATTCGACTTTATTAACCAGTAATCAACGTATCATAAATTTAAATTTTAATTCAAAATTTAATAGAAATTTATCAATAAAACTTCACAGTGTTATTGATTCTATCATATTTGACAAAATAACTTTTCTTGTACAAATTATTTAATCTTTAATAAGATCAAGCTTTTTTCTAAAAAAAAAGAAGTTATAATTCTCTACAAGCACATCTACTAGATTAAAAAGGGCTATGTACAAAAGTGAGCTTAGCCAAAAGTATTAAATCCCAAAAGCCAATTAGAACTATTAATTAATTGAGAAAACAATAATAAATTTTACTTGATGATAAATGAATATAATTTGATTTGTATGAGTTGAATTATAGGATAGTATTGCATGTATTATGAGTTGATTTATTTATAAAGTATCTTTTAACATTTAATGTATATGTATGTCACAATTTTCAATTATATTATATATACTAGAAAAAAATGAATTGAAATTTTTAAATGAATAATATAAAAAAATTTAAATGGTTTCCCAATTATTCATTTCTCAGAAAATCATTTATTACGGTAAAAAGGTTAAAAAAGAAAATTCTAAAATTGAGTGACTTATTTTCAATTTGATTTAGAAAAATAAGGGAGTCAGAACTGAAAATATGTACTATGAGTATGAGGAGAGAAAGATTATGATTATTATCTCACTATCATACAAATATATATTGTGAAATATAGATAAGATGGAATAGAAACAGACTATCTTGATACACGTAAACAAATGAAGTTTTTCTTTCTCATAATAATTCTCCAACATTTTTTTATTCTTTCATTTATTCCAAATGTATCAAGATAGTCATCATCCTTAATAATAATTTTTTTATGATAGTGGAGAAAATAATCACAATTTTTGTCTCTTCACAACTGTATTTTTATTATAAAACTATTCACTCTTATGCAAAGAGTCAATTTAAAAAGTCTATTATATATGCAAAGCGCCAAAATAAATAGTTATATATGTAAAGAGTCGGTATCTTATTATATAATTTGAGAAAAGTTCTTCTAAGTTAATAAATTGCTATCCATCTATTGTAATGGAATACATTGGTTCTTGTTCTTGAAAAAATTATTGATAGATAATAAATTCTTGGTAATTTAATTTAAAATTCTAAAATATTAAAGAACGTTCTACTATCTTTAACTAAAAAGTTAAGAATTAAAAATAAGGTTTATTGCATAAATATTAATTGTAACATATAATATTTTAGCCAAACTCATAAACAAATTCCTAAGCTTGTTGGGTTTTTTCCCTCAAATACCTCAACTATGTTATTTTCCGATTAAATCATTAAACTACCCATAATTTGTTTCTTTTGAAAATTGTTGGTTGATTTCGATCGACATTTCTATTCTAAATGCCTTCAATTGTGCTCTTATTATAATGATTTTCATTGAAGGAATAAAGACAAATTGTCTTGTTTGTTTTTTAATTTGTTCAAAATGACTTGAAGTAAACACAATTATTCTCGAATATTTTCACTATTAATTGGACTAATGAGTTGGGAACAACATATATATCCTTTCCACCAATACCCTCATAAAATTTGATTCCTCATCAACCAACGGTGTTTAAAATGAACAAATTATGGGTAATTTAATGCTTTAATAGAAAAATAACATAGTTAAACTAGTTGAGTAGAAAAACTCAACAAATTTAGAGATATTTATATATTTGTCCTAATATTTTTCTAGTGATTAAAGAATTTTTTACCGAAGAATTAAAACTAAACTTATAAAAATGAAATAAAGGCTTGATAATGTGGAAAGAAGAGTGCATTCTTATGCCAATATAGAAGAAAAATTATAATTAAAAAATTAGGAATAATATGAGAAACCTTTCTTCAGGTTTCACTTTATAATACTCACTTTCTCTATGATTTACAATATTAAATCTATCTTCTTTAGTTTAATATTTTTAAAGCTACTTTTTTAATTTTATTTAAAAAAATATAAATCAATTATGACCTGACAAATTTGCTCTTCTTTATATTGATTTTTTTTGTATTTTTCCATATTATTTTACATTACTAATTTAAAATAATTAATCAACAAAAATAATAGTATATTATATATACATATACGTTTTTTGCCAAAAAAAAAAAAGATAAACATTTCTTCATGGGTAATTTCTTATTGTTAATGTATTTATTAAATAAGTCACATTTTTTAATAATATGGTTTGATAGGAAGAAATTAATATAAAGAGGAGCAAATTTGTCAAATAGTAATATATTTATATTTATTTTAAATAAGTTTAAAGAATAATTTCACAAAAATTATCTCTCTAAAATTATCTCAAAAACTTATTATTAAAAAACATGGAGATGATATTTAAATATACATAATATTCCACTTGATAGACATTTTATCTGCATAAAAAGAAATAATTCTACATTATTTTCTTTTATGGATTAAATAATTTTTTTGTCACGATCCAAAAATGGACGCGATGGCACTCGTCTTATCCCACCAAGACAAGTCAGCCTAAAACTACAATAAAATACGAAAAATTTATAAGTTACTTAAAAGTACCTCCAAAATCTGGTTGTCAGGTGTACAAGCCTCTAAAGTATTACAATTGATTCAAAAGAAAAACTCAAGTCTCAAATGAACTTGTTTCTAGAATTTGACAAGATCATAATTATGGAGAAGAAAGTCTGATGAGATGGAAACAACTGCCTCACAAATCTCCAAGAAGCCTCGGAAAAGAAGAGAATGACAAGTAAAACAAAAATCCAGGCTCATAACCTACAAAAAAATTGTAGTAGCAAGGGTGAGTACCAAACCACACGGTACTCAACAAGTAAATCTCTAAACACAAGCTAAGGGGATGAAATACTGGTACTCCTACCACCCCCAACCAAACCTCCACAACTACAACCTGCATTAAAATCAACCCAACCTAACAGCTCACAGTTTACATAACACGTAGCCCAACAACAACACTTAGACAAATTACATATCCTCAACAACAACACTTTAACAAATTACATATCCTCAACAACAATACTTCAAAAAATTACATATCCGCAATAACAAACTCAATATTGATCAATCATAAGTTCAACAGAAAGGCAATCAGAAGATCAACAAAACACGATATCAAGTTCACTAATGTTAAGTATGTGCATTACAATGGAATGCAATGTCAAGTATAATGATGCATGTCT</genome_strand>
        <mrna_strand>GTCACGTGTACAAGCCTCTAAAGTATTACAA--GATTCAAAAGAAAAAAACTCAAGTCTCAAATGAACTTGTTTCTAGAATAGAACAAGATCATAATTATGGAGAAGAAAGTCTGCTGAGATGGAAACAGCTACCTCACAAATCTCCATGAAGCCTCGGAAAAGAAGAGACTGACAAGTACAACAAAAATCCAGGCTCATAACCTAC-AAAAATTTGTAGAAGCAAGGGGTGAGTACCAAACCACACGGTACTCAGCAAGTAAACCTCTAAACATAAGCTAAGGGGATGAAATACGGGTACTCCTACCACCCCCAACCGAACCTCCACAAATACAACCTGCATTAAAATCAACCCAACCTAACAGCTCACAATTTACATAGCACATAGCTCAACAACAACACTTAGGCAAATTACATATCCTCAACAACAACACTTCAACAAATTAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................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ACAAGCTCAATATTGATCAATCACAAGTTCCGCAGAAAAGCAATCAAAACATCAGCGAAATACGATATCAAGTTCACTAATGGTAAGTATGTGCAATGCAATGGAATGCAATGTCAAGTATAATGATGCATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E278592" ref_strand="+" ref_description="SGN-E278592 [cLER-10-F11]">
      <seq>tatatgtgggggagtcacgggattggtgatggattgacttgtccacattgattaatttaatgatgaaaaaaaaaggataaaaaaaaaggcaatgtgattaaatatttaagtgtgatgtgttcagaaagggatgaaggattgttgaatcattgttgatgtgatttcatgtttgtgtggttttgaattgtgcaatgttatgaaaatggtgatctcctcattatttgtgtgaacttgccatctgcattattatgaggcattggttgtgacaagtgttatgtgcattgagaaagaatgagtacttaagaggatgtacaatttcgagggacgtatcgcgcgccgcgatggatactatatttcgagggacgtatcgcatgccgcgatggatactatattttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="169693" stop="170769"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="169993" g_stop="170120" g_length="128"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.867"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="170121" i_stop="170170" i_length="50">
            <donor d_prob="0.000" d_score="0.86"/>
            <acceptor a_prob="0.000" a_score="0.88"/>
          </gDNA_intron_boundary>
          <shorter_than_min_intron_len/>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="170171" g_stop="170410" g_length="240"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="371" r_length="242" r_score="0.938"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E278592" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>368</cumulative_length_of_scored_exons>
        <coverage percentage="0.927" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E278592" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="169993" e_stop="170120"/>
          <exon e_start="170171" e_stop="170410"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATATGTTTGGGAGTAACAGGATTGGTGATGGATTGACTTATCCACATTAATTAATTCTAATGATGAAAAAAAAGGGAT--AACAAAAGGCAATGTGATTAATTGTTTATGTGTGATGTGTTGAGAAAGGGTTGAAGGCTTGTTGAATCATTGTTTATGTGTGATGTGTTGAGAAAGGGT--TGAAGGCTTGTTGAATCATTGTTAATGTGATTTCATGTTTGTGTGGTTGTGAACTGTGCAATGTTATGAAAATGGTCATCTTCTCATTATTTGTGTGAACTTGTCATCTGCATTATTATGAGGCATTGGTTGTGACAAGTGTTATGTGCATTGAGAAAGAATGAGTACTTAAGAGGATGTACCATTTCGAGGGACGTATCGCGTGCCGCGATGGAAAATATATTTCGAGGGACGTATCGC</genome_strand>
        <mrna_strand>TATATGTGGGGGAGTCACGGGATTGGTGATGGATTGACTTGTCCACATTGATTAATT-TAATGATGAAAAAAAAAGGATAAAAAAAAAGGCAATGTGATTAAATATTTAAGTGTGATGTGTTCAGAAAGG..................................................GATGAAGGATTGTTGAATCATTGTTGATGTGATTTCATGTTTGTGTGGTTTTGAATTGTGCAATGTTATGAAAATGGTGATCTCCTCATTATTTGTGTGAACTTGCCATCTGCATTATTATGAGGCATTGGTTGTGACAAGTGTTATGTGCATTGAGAAAGAATGAGTACTTAAGAGGATGTACAATTTCGAGGGACGTATCGCGCGCCGCGATGGATACTATATTTCGAGGGACGTATCGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352716" ref_strand="+" ref_description="SGN-E352716 [cTOS-11-H19]">
      <seq>gatctgtcccaggcttggctaacgtcacagttttagcattacaatccaagattgcaaaatttggagaaagccaagtcatacccagaattacatcaaaatcaaccatttctaagataaccaagtctacataagtattgctccccacaaaagtcaccagaccagacctatatactttttcaactatcacagactcacccaccggagtagaaacacgaataggcatgtcaagcaattcataatttaatttaagaccagtagcaaatgaggaagatacatatgaaaatgtggatccagggtcaaataatacaaaagccatgcaatcacaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="-" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="178799" stop="177869"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="178499" g_stop="178169" g_length="331"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="331" r_length="331" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="-" ref_id="SGN-E352716" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>331</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E352716" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="178499" e_stop="178169"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GATCTGTCCCAGGCTTGGCTAACGTTACAGTTTTAGCATTACAATCTAAGATTGCAAAATTTGGAGAAAGACAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTCACCAGAAAAGACCTATATACCTTTTCAACTATCACAGACTCACCCACCGGAGTACAAGCACGAATAGGCATGTCAAGCAATTCACAATTTAAATTAAGTCCAGTAACAAATGCGGAAGATACATATGAAAATGTGGAGCCAGGGTCAAATAATACAGAAGCCATACAATCACAAACCAA</genome_strand>
        <mrna_strand>GATCTGTCCCAGGCTTGGCTAACGTCACAGTTTTAGCATTACAATCCAAGATTGCAAAATTTGGAGAAAGCCAAGTCATACCCAGAATTACATCAAAATCAACCATTTCTAAGATAACCAAGTCTACATAAGTATTGCTCCCCACAAAAGTCACCAGACCAGACCTATATACTTTTTCAACTATCACAGACTCACCCACCGGAGTAGAAACACGAATAGGCATGTCAAGCAATTCATAATTTAATTTAAGACCAGTAGCAAATGAGGAAGATACATATGAAAATGTGGATCCAGGGTCAAATAATACAAAAGCCATGCAATCACAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E352117" ref_strand="+" ref_description="SGN-E352117 [cTOS-13-N24]">
      <seq>tttgatcctgcctccacattttcatatgtatcttcctcatttgctactgttcttaatttacatagtgaatcgcttgacatacctattcgtgttctactccggtgggtgagtctgtgattgttgaaaaggtgtataggtcttgtcttgtgacatttgtgggagcaatactcatgtagacttggttatcctataaatggttgacttcgatgtaattctgggtatgacttggctgtctccaaattttgcaatcttggattgtaatgctaaaactgtaacgttggccaagcctgagatagatgcgttagtgtgggagggtgactacacttccactccagttcgtatcatctcctttctttgtgctaagagaatggttagtaaagggtgtttagctttcttggcacacctcagggatgatactacccaagtaccttcaattgagtcagtttcgatagtccgtgagtttctggatgtgtttcctgcagaccttcctggtatgccaccggatagggatattgacttttgcattgatctggagccgggtgatcaccccatttccatacccccttatagaatggctcccgctgagttgggggagttaaaggcccaacttcaagagttgttangtaagggcttcattangccaagtgcatccccttggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0034P15-1xmKf/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0034P15.1" temp_strand="+" temp_description="C00HBa0034P15.1  CU914757.7 htgs_phase:3 submitted_to_sgn_as:C00HBa0034P15 sequenced_by:sanger upload_account_name:uk">
        <position start="177899" stop="179160"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="178199" g_stop="178860" g_length="662"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="659" r_length="659" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0034P15.1" gen_strand="+" ref_id="SGN-E352117" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>662</cumulative_length_of_scored_exons>
        <coverage percentage="1.005" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0034P15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E352117" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="178199" e_stop="178860"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTGACCCTGGCTCCACATTTTCATATGTATCTTCCGCATTTGTTACTGGACTTAATTTAAATTGTGAATTGCTTGACATGCCTATTCGTGCTTGTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTATATAGGTCTTTTCTGGTGACTTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGTCTTTCTCCAAATTTTGCAATCTTAGATTGTAATGCTAAAACTGTAACGTTAGCCAAGCCTGGGACAGATCCGTTAGTATGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTCCTTCGTGCTAAGAGAATGGTTAGAAAGGGTTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCGATTGAGTCGGTTTCAATAGTCCGTGAGTTTCTTGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTGACTTTTGTATTGATCTGGAGCCGGGCACTCGCCCCATTTCCATACCCCCCTTATAGGATGGCTCCCGCTGAGCTAAGTGAGCTAAAGGCGCAACTTCAAGAGTTGTTAAGTAAAGGTTTCATTAGACCAAGTGCATCCCCTTGGG</genome_strand>
        <mrna_strand>TTTGATCCTGCCTCCACATTTTCATATGTATCTTCCTCATTTGCTACTGTTCTTAATTTACATAGTGAATCGCTTGACATACCTATTCGTG-TTCTACTCCGGTGGGTGAGTCTGTGATTGTTGAAAAGGTGTATAGGTCTTGTCTTGTGACATTTGT-GGGAGCAATACTCATGTAGACTTGGTTATCCTATAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGGCTGTCTCCAAATTTTGCAATCTTGGATTGTAATGCTAAAACTGTAACGTTGGCCAAGCCTGAGATAGATGCGTTAGTGTGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTTCTTTGTGCTAAGAGAATGGTTAGTAAAGGGTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCAATTGAGTCAGTTTCGATAGTCCGTGAGTTTCTGGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGGGATATTGACTTTTGCATTGATCTGGAGCCGGGTGATCACCCCATTTCCATA-CCCCCTTATAGAATGGCTCCCGCTGAGTTGGGGGAGTTAAAGGCCCAACTTCAAGAGTTGTTANGTAAGGGCTTCATTANGCCAAGTGCATCCCCTTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>210</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="21859" PGL_stop="22143"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="21859" e_stop="22143"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="21859" e_stop="22143" e_length="285"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="21859" stop="22143"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355114" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGGTTCGTTGGTCTCATCACACAAGAACGGTCTAGTAGAGTCTTAAGGAACGGTAGGGGGACGCCTTTACTTTTCCTTGAGAGGCTATAAGACTTTAGGAAAATTTCACTCTTTCATTCTTTCTTTCGTGCTACTACTTGAGTCCAATTGGTATCTAGGCGATACGAATTGGTATCTGACCATCTTCACTCTCTTTCGCAGATGGTTAGAACTAGAGCAACGACTACGCCAACACCAACACCGGCCAGACAAGAAACAATTGAGCCAGCCACTGGGGCTGTGG</gDNA_template>
            <first_frame> L  G  S  L  V  S  S  H  K  N  G  L  V  E  S  *  G  T  V  G  G  R  L  Y  F  S  L  R  G  Y  K  T  L  G  K  F  H  S  F  I  L  S  F  V  L  L  L  E  S  N  W  Y  L  G  D  T  N  W  Y  L  T  I  F  T  L  F  R  R  W  L  E  L  E  Q  R  L  R  Q  H  Q  H  R  P  D  K  K  Q  L  S  Q  P  L  G  L  W </first_frame>
            <second_frame>  *  V  R  W  S  H  H  T  R  T  V  *  *  S  L  K  E  R  *  G  D  A  F  T  F  P  *  E  A  I  R  L  *  E  N  F  T  L  S  F  F  L  S  C  Y  Y  L  S  P  I  G  I  *  A  I  R  I  G  I  *  P  S  S  L  S  F  A  D  G  *  N  *  S  N  D  Y  A  N  T  N  T  G  Q  T  R  N  N  *  A  S  H  W  G  C   </second_frame>
            <third_frame>   R  F  V  G  L  I  T  Q  E  R  S  S  R  V  L  R  N  G  R  G  T  P  L  L  F  L  E  R  L  *  D  F  R  K  I  S  L  F  H  S  F  F  R  A  T  T  *  V  Q  L  V  S  R  R  Y  E  L  V  S  D  H  L  H  S  L  S  Q  M  V  R  T  R  A  T  T  T  P  T  P  T  P  A  R  Q  E  T  I  E  P  A  T  G  A  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="21907" stop="22143"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTVGGRLYFSLRGYKTLGKFHSFILSFVLLLESNWYLGDTNWYLTIFTLFRRWLELEQRLRQHQHRPDKKQLSQPLGLW</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="24859" PGL_stop="22150"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="24859" e_stop="22150"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="24859" e_stop="22150" e_length="2710"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24859" stop="24147"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24859" stop="24264"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375319" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24859" stop="24335"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E204434" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24788" stop="24109"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368762" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24788" stop="24430"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240817" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24270" stop="23509"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E355244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="24270" stop="23610"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351414" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23660" stop="23103"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E244046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23656" stop="22894"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23576" stop="22788"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23574" stop="23042"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353805" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="23500" stop="22804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356209" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22940" stop="22221"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E356614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22937" stop="22274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352401" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22582" stop="22150"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352180" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAATCCCTTGACGAATCGACGGTAGTAACTAGCTAACCCAACAAAGCTCCTTATTTCTGACACATTAGTGGGTCTTACCCAATTCTTCACTGTCTCAATCTTAGAAGGATCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACCGCATCTAGCCAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATACCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATATCATCAATAAATACGATCACGAAGAGGTCCAAATATGGCTTAAAAATCTCGTTCATCAAGCTCATGAACGCAGCAGGGGCATTCGTAAGACCAAAGGACATCACCACAAATTCGTAATGCCCATACCTCGTTCGAAAAGCAGTCTTTGGCACATCCATTGCCCGTATTTTCAATTGATGATAACCGGATCTCAAGTCAATCTTAGAGAAGACACAAGCACCTTGTAACTGATCGAACAAGTCATCAATGCGAGTAAGAGGATACTTGTTCTTAATAGTTACTTTATTCAGTTGTCTGTAGTCTATGCACATCCGAAAACTCCCATCCTTCTTCTTTACAAACAAAACCGGAGCACCCCAAGGAGATGCACTTGGTCTAATAAAGCCTTTGTTCAATAACTCTTGAAGTTGTGCTTTTAACTCTCTTAACTCCGCGGGAGCCATTCTATAAGGGGGTATAGAAATGGGGCGAGTACCGGGTTCAAGATCAATACAGAAGTCAATATCCCTATCCGGTGGCATACCAGGAAGATCTGCAGGGAACACATCCAGAAACTCACGAACTACTGAAACTGACTCAATCGTAGGTACTTGGGTAGTGTCATCCTTGAGATTTGCCAAGAAAGCTAAACACCCTTTACTAATCATTTTCCTAGCACAAAGAAATGAGACGATGCGGACCGGATTGGGAGTGTAGTCACCCTCCCACACTAACGGGTCTGTCCCAGGCTTGGCTAACGTCACCGTTTTAGCATTACAATCCAAGATCGCAAATTGCGGAGAAAGCCAAGTCATACCCAGAGTCACGTCAAAATCATCCATTTCTAAGATAACCAAATCTACATAAGTGTTGCTCCCCACAAAGTTTACCAAACAAGACCTATATACCTTTTCAACTACCACAGACTCACCCACCGGAGTAGAGACACGAATAGGCATATCAAGTAATTCACAATGTAAATTTAGACCATTAGCAAATGAGGAAGATACATAAGAAAACGTGGATCCAGGATCAAACAATACAGAAGCCATGCAATCACAAACCAGAAGATTACCTGTGATGACAGCATCAGATGCCTCCGCTTCAGACCGCCCAGGGAAAGCGTAACAATGGGCCCTATCGTTTGTCTGTCCGTTGCCCCTACCATGTTGTGATGTAGTGGCCCCAGTTTGCCCATCACCTCGGCCGTTTTGGTGACCACCATTACCACGACCACCATGTCTCCAGAATAACGGCCTCTACCATGACCACCTCTACCTCTAGCTATTGGGGGTCTATAACTTTGTCTGGGACAATTTTTCCTAATATGTCCAATCTCCCCACATCCATAACATTCTCTGGAGTCAATCCTAGGCCCCTCGGAGAAGTGCTGACCGGTCTGAGGTGGTCCCCCAACTACAGTCTATAGTGAAGACTGAATTGGTCGGACTGAGTAACTTCCCGAACCTTGTCCTCTAGTGTAAGAACCATTAAACTCACCTCCCTTTCGAAGCCTTTTTGATGTCGGTGTTGTGGTGAAGTCGTCTGGCTTCACTCCTTCCACTTCTATCACAAAGTCTACCACCTCTTGGAAGGATTTTGCCGTTGCCGCTATCTGTAAGGCCGAAATCCGCAATTCTGACCTCAACCCCTTCACAAACCGGCGAATCTGCTCTTGAGGACTGAAACAGAGTTGAGTGGCATATCTGGATAGTGCACAGAACTTAGCCTCATAAGCATTAACTGACATCCTACCTTGCTCTAGGCTCAGGAACTCATCCCTTTTCCTATCCCTCAAAGTCCGGGGGATATACTTCTCCATAAACAATCTAGAGAACGAGGCCCAAGTCATAGGTGGTGCCTCTATTGGTTGACACTCGATATGTGACCGCCACCACATTTTGGCGTTCCCTTGAAACTGATAACTCACGAACTCAACACCAAACCGTTCTACTATACCCATCTTGTGTAGTAGCTCATGACAGTCAACCAGAAAATCATAAGCATCCTCTGATTCAGCGCCCTTGAAGACCGGAGGTTTCAATTTCAAGAACTTACTAAAAAGTTCGTGCTGATCATTTGTCATTATAGGCCCAGTAGTCAGACGTGGAAACGTGCCTATTTCCAATGGAACATCCATGCGTGGAGCCATAGTAGCCGCATGTTGTACTTCTGAAACCAGAGGTGTTGGCGCAGAAAACACTGGAGGTGCCTGACCTTGATCAGATAACCCGCTAAGATAAGCCAGAACCTGATTGATCATCTCTGGGGTAGGTTGGGGTGGCGTTTCCTCATTTTGCACTTGTTCAGTTTCCCCATCCTCCCCTTCTCTTATTACTTCCTCAGTCGGTGGGGGAGTCACTGCCCTAGTATCAGATGGGCTAGGTGCTCGTCCTCTTCCTCTAGAGGACGTCCTCCCACGACCTCTACCACGGCCCCTTGCCGCTGTTCTTC</gDNA_template>
            <first_frame> E  S  L  D  E  S  T  V  V  T  S  *  P  N  K  A  P  Y  F  *  H  I  S  G  S  Y  P  I  L  H  C  L  N  L  R  R  I  H  H  H  S  I  L  R  N  H  V  P  Q  E  G  H  R  I  *  P  K  L  T  L  R  E  L  G  I  K  L  F  L  P  Q  H  F  Q  Y  H  S  Q  M  L  F  M  F  L  L  A  L  *  V  Y  Q  Y  I  I  N  K  Y  D  H  E  E  V  Q  I  W  L  K  N  L  V  H  Q  A  H  E  R  S  R  G  I  R  K  T  K  G  H  H  H  K  F  V  M  P  I  P  R  S  K  S  S  L  W  H  I  H  C  P  Y  F  Q  L  M  I  T  G  S  Q  V  N  L  R  E  D  T  S  T  L  *  L  I  E  Q  V  I  N  A  S  K  R  I  L  V  L  N  S  Y  F  I  Q  L  S  V  V  Y  A  H  P  K  T  P  I  L  L  L  Y  K  Q  N  R  S  T  P  R  R  C  T  W  S  N  K  A  F  V  Q  *  L  L  K  L  C  F  *  L  S  *  L  R  G  S  H  S  I  R  G  Y  R  N  G  A  S  T  G  F  K  I  N  T  E  V  N  I  P  I  R  W  H  T  R  K  I  C  R  E  H  I  Q  K  L  T  N  Y  *  N  *  L  N  R  R  Y  L  G  S  V  I  L  E  I  C  Q  E  S  *  T  P  F  T  N  H  F  P  S  T  K  K  *  D  D  A  D  R  I  G  S  V  V  T  L  P  H  *  R  V  C  P  R  L  G  *  R  H  R  F  S  I  T  I  Q  D  R  K  L  R  R  K  P  S  H  T  Q  S  H  V  K  I  I  H  F  *  D  N  Q  I  Y  I  S  V  A  P  H  K  V  Y  Q  T  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  R  D  T  N  R  H  I  K  *  F  T  M  *  I  *  T  I  S  K  *  G  R  Y  I  R  K  R  G  S  R  I  K  Q  Y  R  S  H  A  I  T  N  Q  K  I  T  C  D  D  S  I  R  C  L  R  F  R  P  P  R  E  S  V  T  M  G  P  I  V  C  L  S  V  A  P  T  M  L  *  C  S  G  P  S  L  P  I  T  S  A  V  L  V  T  T  I  T  T  T  T  M  S  P  E  *  R  P  L  P  *  P  P  L  P  L  A  I  G  G  L  *  L  C  L  G  Q  F  F  L  I  C  P  I  S  P  H  P  *  H  S  L  E  S  I  L  G  P  S  E  K  C  *  P  V  *  G  G  P  P  T  T  V  Y  S  E  D  *  I  G  R  T  E  *  L  P  E  P  C  P  L  V  *  E  P  L  N  S  P  P  F  R  S  L  F  D  V  G  V  V  V  K  S  S  G  F  T  P  S  T  S  I  T  K  S  T  T  S  W  K  D  F  A  V  A  A  I  C  K  A  E  I  R  N  S  D  L  N  P  F  T  N  R  R  I  C  S  *  G  L  K  Q  S  *  V  A  Y  L  D  S  A  Q  N  L  A  S  *  A  L  T  D  I  L  P  C  S  R  L  R  N  S  S  L  F  L  S  L  K  V  R  G  I  Y  F  S  I  N  N  L  E  N  E  A  Q  V  I  G  G  A  S  I  G  *  H  S  I  C  D  R  H  H  I  L  A  F  P  *  N  *  *  L  T  N  S  T  P  N  R  S  T  I  P  I  L  C  S  S  S  *  Q  S  T  R  K  S  *  A  S  S  D  S  A  P  L  K  T  G  G  F  N  F  K  N  L  L  K  S  S  C  *  S  F  V  I  I  G  P  V  V  R  R  G  N  V  P  I  S  N  G  T  S  M  R  G  A  I  V  A  A  C  C  T  S  E  T  R  G  V  G  A  E  N  T  G  G  A  *  P  *  S  D  N  P  L  R  *  A  R  T  *  L  I  I  S  G  V  G  W  G  G  V  S  S  F  C  T  C  S  V  S  P  S  S  P  S  L  I  T  S  S  V  G  G  G  V  T  A  L  V  S  D  G  L  G  A  R  P  L  P  L  E  D  V  L  P  R  P  L  P  R  P  L  A  A  V  L  </first_frame>
            <second_frame>  N  P  L  T  N  R  R  *  *  L  A  N  P  T  K  L  L  I  S  D  T  L  V  G  L  T  Q  F  F  T  V  S  I  L  E  G  S  T  I  T  P  S  L  E  T  T  C  P  K  K  D  T  A  S  S  Q  N  S  H  L  E  N  L  A  *  S  F  F  S  L  N  I  S  N  T  I  L  K  C  S  S  C  S  F  L  L  F  E  Y  T  N  I  S  S  I  N  T  I  T  K  R  S  K  Y  G  L  K  I  S  F  I  K  L  M  N  A  A  G  A  F  V  R  P  K  D  I  T  T  N  S  *  C  P  Y  L  V  R  K  A  V  F  G  T  S  I  A  R  I  F  N  *  *  *  P  D  L  K  S  I  L  E  K  T  Q  A  P  C  N  *  S  N  K  S  S  M  R  V  R  G  Y  L  F  L  I  V  T  L  F  S  C  L  *  S  M  H  I  R  K  L  P  S  F  F  F  T  N  K  T  G  A  P  Q  G  D  A  L  G  L  I  K  P  L  F  N  N  S  *  S  C  A  F  N  S  L  N  S  A  G  A  I  L  *  G  G  I  E  M  G  R  V  P  G  S  R  S  I  Q  K  S  I  S  L  S  G  G  I  P  G  R  S  A  G  N  T  S  R  N  S  R  T  T  E  T  D  S  I  V  G  T  W  V  V  S  S  L  R  F  A  K  K  A  K  H  P  L  L  I  I  F  L  A  Q  R  N  E  T  M  R  T  G  L  G  V  *  S  P  S  H  T  N  G  S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  N  C  G  E  S  Q  V  I  P  R  V  T  S  K  S  S  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  F  T  K  Q  D  L  Y  T  F  S  T  T  T  D  S  P  T  G  V  E  T  R  I  G  I  S  S  N  S  Q  C  K  F  R  P  L  A  N  E  E  D  T  *  E  N  V  D  P  G  S  N  N  T  E  A  M  Q  S  Q  T  R  R  L  P  V  M  T  A  S  D  A  S  A  S  D  R  P  G  K  A  *  Q  W  A  L  S  F  V  C  P  L  P  L  P  C  C  D  V  V  A  P  V  C  P  S  P  R  P  F  W  *  P  P  L  P  R  P  P  C  L  Q  N  N  G  L  Y  H  D  H  L  Y  L  *  L  L  G  V  Y  N  F  V  W  D  N  F  S  *  Y  V  Q  S  P  H  I  H  N  I  L  W  S  Q  S  *  A  P  R  R  S  A  D  R  S  E  V  V  P  Q  L  Q  S  I  V  K  T  E  L  V  G  L  S  N  F  P  N  L  V  L  *  C  K  N  H  *  T  H  L  P  F  E  A  F  L  M  S  V  L  W  *  S  R  L  A  S  L  L  P  L  L  S  Q  S  L  P  P  L  G  R  I  L  P  L  P  L  S  V  R  P  K  S  A  I  L  T  S  T  P  S  Q  T  G  E  S  A  L  E  D  *  N  R  V  E  W  H  I  W  I  V  H  R  T  *  P  H  K  H  *  L  T  S  Y  L  A  L  G  S  G  T  H  P  F  S  Y  P  S  K  S  G  G  Y  T  S  P  *  T  I  *  R  T  R  P  K  S  *  V  V  P  L  L  V  D  T  R  Y  V  T  A  T  T  F  W  R  S  L  E  T  D  N  S  R  T  Q  H  Q  T  V  L  L  Y  P  S  C  V  V  A  H  D  S  Q  P  E  N  H  K  H  P  L  I  Q  R  P  *  R  P  E  V  S  I  S  R  T  Y  *  K  V  R  A  D  H  L  S  L  *  A  Q  *  S  D  V  E  T  C  L  F  P  M  E  H  P  C  V  E  P  *  *  P  H  V  V  L  L  K  P  E  V  L  A  Q  K  T  L  E  V  P  D  L  D  Q  I  T  R  *  D  K  P  E  P  D  *  S  S  L  G  *  V  G  V  A  F  P  H  F  A  L  V  Q  F  P  H  P  P  L  L  L  L  L  P  Q  S  V  G  E  S  L  P  *  Y  Q  M  G  *  V  L  V  L  F  L  *  R  T  S  S  H  D  L  Y  H  G  P  L  P  L  F  F </second_frame>
            <third_frame>   I  P  *  R  I  D  G  S  N  *  L  T  Q  Q  S  S  L  F  L  T  H  *  W  V  L  P  N  S  S  L  S  Q  S  *  K  D  P  P  S  L  H  P  *  K  P  R  A  P  R  R  T  P  H  L  A  K  T  H  T  *  R  T  W  H  K  A  F  S  P  S  T  F  P  I  P  F  S  N  A  L  H  V  P  S  C  S  L  S  I  P  I  Y  H  Q  *  I  R  S  R  R  G  P  N  M  A  *  K  S  R  S  S  S  S  *  T  Q  Q  G  H  S  *  D  Q  R  T  S  P  Q  I  R  N  A  H  T  S  F  E  K  Q  S  L  A  H  P  L  P  V  F  S  I  D  D  N  R  I  S  S  Q  S  *  R  R  H  K  H  L  V  T  D  R  T  S  H  Q  C  E  *  E  D  T  C  S  *  *  L  L  Y  S  V  V  C  S  L  C  T  S  E  N  S  H  P  S  S  L  Q  T  K  P  E  H  P  K  E  M  H  L  V  *  *  S  L  C  S  I  T  L  E  V  V  L  L  T  L  L  T  P  R  E  P  F  Y  K  G  V  *  K  W  G  E  Y  R  V  Q  D  Q  Y  R  S  Q  Y  P  Y  P  V  A  Y  Q  E  D  L  Q  G  T  H  P  E  T  H  E  L  L  K  L  T  Q  S  *  V  L  G  *  C  H  P  *  D  L  P  R  K  L  N  T  L  Y  *  S  F  S  *  H  K  E  M  R  R  C  G  P  D  W  E  C  S  H  P  P  T  L  T  G  L  S  Q  A  W  L  T  S  P  F  *  H  Y  N  P  R  S  Q  I  A  E  K  A  K  S  Y  P  E  S  R  Q  N  H  P  F  L  R  *  P  N  L  H  K  C  C  S  P  Q  S  L  P  N  K  T  Y  I  P  F  Q  L  P  Q  T  H  P  P  E  *  R  H  E  *  A  Y  Q  V  I  H  N  V  N  L  D  H  *  Q  M  R  K  I  H  K  K  T  W  I  Q  D  Q  T  I  Q  K  P  C  N  H  K  P  E  D  Y  L  *  *  Q  H  Q  M  P  P  L  Q  T  A  Q  G  K  R  N  N  G  P  Y  R  L  S  V  R  C  P  Y  H  V  V  M  *  W  P  Q  F  A  H  H  L  G  R  F  G  D  H  H  Y  H  D  H  H  V  S  R  I  T  A  S  T  M  T  T  S  T  S  S  Y  W  G  S  I  T  L  S  G  T  I  F  P  N  M  S  N  L  P  T  S  I  T  F  S  G  V  N  P  R  P  L  G  E  V  L  T  G  L  R  W  S  P  N  Y  S  L  *  *  R  L  N  W  S  D  *  V  T  S  R  T  L  S  S  S  V  R  T  I  K  L  T  S  L  S  K  P  F  *  C  R  C  C  G  E  V  V  W  L  H  S  F  H  F  Y  H  K  V  Y  H  L  L  E  G  F  C  R  C  R  Y  L  *  G  R  N  P  Q  F  *  P  Q  P  L  H  K  P  A  N  L  L  L  R  T  E  T  E  L  S  G  I  S  G  *  C  T  E  L  S  L  I  S  I  N  *  H  P  T  L  L  *  A  Q  E  L  I  P  F  P  I  P  Q  S  P  G  D  I  L  L  H  K  Q  S  R  E  R  G  P  S  H  R  W  C  L  Y  W  L  T  L  D  M  *  P  P  P  H  F  G  V  P  L  K  L  I  T  H  E  L  N  T  K  P  F  Y  Y  T  H  L  V  *  *  L  M  T  V  N  Q  K  I  I  S  I  L  *  F  S  A  L  E  D  R  R  F  Q  F  Q  E  L  T  K  K  F  V  L  I  I  C  H  Y  R  P  S  S  Q  T  W  K  R  A  Y  F  Q  W  N  I  H  A  W  S  H  S  S  R  M  L  Y  F  *  N  Q  R  C  W  R  R  K  H  W  R  C  L  T  L  I  R  *  P  A  K  I  S  Q  N  L  I  D  H  L  W  G  R  L  G  W  R  F  L  I  L  H  L  F  S  F  P  I  L  P  F  S  Y  Y  F  L  S  R  W  G  S  H  C  P  S  I  R  W  A  R  C  S  S  S  S  S  R  G  R  P  P  T  T  S  T  T  A  P  C  R  C  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23423" stop="23175"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>246</number_coding_nucleotides>
                  <number_encoded_amino_acids>82</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WPQFAHHLGRFGDHHYHDHHVSRITASTMTTSTSSYWGSITLSGTIFPNMSNLPTSITFSGVNPRPLGEVLTGLRWSPNYSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24132" stop="23887"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGIEMGRVPGSRSIQKSISLSGGIPGRSAGNTSRNSRTTETDSIVGTWVVSSLRFAKKAKHPLLIIFLAQRNETMRTGLGV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24595" stop="24356"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VYQYIINKYDHEEVQIWLKNLVHQAHERSRGIRKTKGHHHKFVMPIPRSKSSLWHIHCPYFQLMITGSQVNLREDTSTL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22373" stop="22152"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>222</number_coding_nucleotides>
                  <number_encoded_amino_acids>74</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PAKISQNLIDHLWGRLGWRFLILHLFSFPILPFSYYFLSRWGSHCPSIRWARCSSSSSRGRPPTTSTTAPCRCS</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="5"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22348" stop="22151"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIISGVGWGGVSSFCTCSVSPSSPSLITSSVGGGVTALVSDGLGARPLPLEDVLPRPLPRPLAAVL</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="6"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="24663" stop="24466"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFFSLNISNTILKCSSCSFLLFEYTNISSINTITKRSKYGLKISFIKLMNAAGAFVRPKDITTNS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="7"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="23119" stop="22925"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPLNSPPFRSLFDVGVVVKSSGFTPSTSITKSTTSWKDFAVAAICKAEIRNSDLNPFTNRRICS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="22844" PGL_stop="24287"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="22844" e_stop="23016"/>
            <exon e_start="23760" e_stop="24287"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.171" e_score="0.890"/>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.890">
            <gDNA_exon_boundary e_start="22844" e_stop="23016" e_length="173"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.171">
            <gDNA_intron_boundary i_start="23017" i_stop="23759" i_length="743"/>
          </intron>
          <exon e_serial="2" e_score="0.909">
            <gDNA_exon_boundary e_start="23760" e_stop="24287" e_length="528"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="22844" stop="23016"/>
              <exon start="23760" stop="24287"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E353359" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCAAGGTAGGATGTCAGTTAATGCTTATGAGGCTAAGTTCTGTGCACTATCCAGATATGCCACTCAACTCTGTTTCAGTCCTCAAGAGCAGATTCGCCGGTTTGTGAAGGGGTTGAGGTCAGAATTGCGGATTTCGGCCTTACAGATAGCGGCAACGGCAAAATCCTTCCAAG : AAATGGATGATTTTGACGTGACTCTGGGTATGACTTGGCTTTCTCCGCAATTTGCGATCTTGGATTGTAATGCTAAAACGGTGACGTTAGCCAAGCCTGGGACAGACCCGTTAGTGTGGGAGGGTGACTACACTCCCAATCCGGTCCGCATCGTCTCATTTCTTTGTGCTAGGAAAATGATTAGTAAAGGGTGTTTAGCTTTCTTGGCAAATCTCAAGGATGACACTACCCAAGTACCTACGATTGAGTCAGTTTCAGTAGTTCGTGAGTTTCTGGATGTGTTCCCTGCAGATCTTCCTGGTATGCCACCGGATAGGGATATTGACTTCTGTATTGATCTTGAACCCGGTACTCGCCCCATTTCTATACCCCCTTATAGAATGGCTCCCGCGGAGTTAAGAGAGTTAAAAGCACAACTTCAAGAGTTATTGAACAAAGGCTTTATTAGACCAAGTGCATCTCCTTGGGGTGCTCCGGTTTTGTTTGTAAAGAAGAAGGATGGGAGTTTTCGGATGTGCATAGACTACA</gDNA_template>
            <first_frame> A  R  *  D  V  S  *  C  L  *  G  *  V  L  C  T  I  Q  I  C  H  S  T  L  F  Q  S  S  R  A  D  S  P  V  C  E  G  V  E  V  R  I  A  D  F  G  L  T  D  S  G  N  G  K  I  L  P  R :   N  G  *  F  *  R  D  S  G  Y  D  L  A  F  S  A  I  C  D  L  G  L  *  C  *  N  G  D  V  S  Q  A  W  D  R  P  V  S  V  G  G  *  L  H  S  Q  S  G  P  H  R  L  I  S  L  C  *  E  N  D  *  *  R  V  F  S  F  L  G  K  S  Q  G  *  H  Y  P  S  T  Y  D  *  V  S  F  S  S  S  *  V  S  G  C  V  P  C  R  S  S  W  Y  A  T  G  *  G  Y  *  L  L  Y  *  S  *  T  R  Y  S  P  H  F  Y  T  P  L  *  N  G  S  R  G  V  K  R  V  K  S  T  T  S  R  V  I  E  Q  R  L  Y  *  T  K  C  I  S  L  G  C  S  G  F  V  C  K  E  E  G  W  E  F  S  D  V  H  R  L   </first_frame>
            <second_frame>  Q  G  R  M  S  V  N  A  Y  E  A  K  F  C  A  L  S  R  Y  A  T  Q  L  C  F  S  P  Q  E  Q  I  R  R  F  V  K  G  L  R  S  E  L  R  I  S  A  L  Q  I  A  A  T  A  K  S  F  Q   : E  M  D  D  F  D  V  T  L  G  M  T  W  L  S  P  Q  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  P  N  P  V  R  I  V  S  F  L  C  A  R  K  M  I  S  K  G  C  L  A  F  L  A  N  L  K  D  D  T  T  Q  V  P  T  I  E  S  V  S  V  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  Y  R  M  A  P  A  E  L  R  E  L  K  A  Q  L  Q  E  L  L  N  K  G  F  I  R  P  S  A  S  P  W  G  A  P  V  L  F  V  K  K  K  D  G  S  F  R  M  C  I  D  Y  </second_frame>
            <third_frame>   K  V  G  C  Q  L  M  L  M  R  L  S  S  V  H  Y  P  D  M  P  L  N  S  V  S  V  L  K  S  R  F  A  G  L  *  R  G  *  G  Q  N  C  G  F  R  P  Y  R  *  R  Q  R  Q  N  P  S  K  :  K  W  M  I  L  T  *  L  W  V  *  L  G  F  L  R  N  L  R  S  W  I  V  M  L  K  R  *  R  *  P  S  L  G  Q  T  R  *  C  G  R  V  T  T  L  P  I  R  S  A  S  S  H  F  F  V  L  G  K  *  L  V  K  G  V  *  L  S  W  Q  I  S  R  M  T  L  P  K  Y  L  R  L  S  Q  F  Q  *  F  V  S  F  W  M  C  S  L  Q  I  F  L  V  C  H  R  I  G  I  L  T  S  V  L  I  L  N  P  V  L  A  P  F  L  Y  P  L  I  E  W  L  P  R  S  *  E  S  *  K  H  N  F  K  S  Y  *  T  K  A  L  L  D  Q  V  H  L  L  G  V  L  R  F  C  L  *  R  R  R  M  G  V  F  G  C  A  *  T  T </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="22845" stop="23016"/>
                    <exon start="23760" stop="24286"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QGRMSVNAYEAKFCALSRYATQLCFSPQEQIRRFVKGLRSELRISALQIAATAKSFQEMDDFDVTLGMTWLSPQFAILDCNAKTVTLAKPGTDPLVWEGDYTPNPVRIVSFLCARKMISKGCLAFLANLKDDTTQVPTIESVSVVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPYRMAPAELRELKAQLQELLNKGFIRPSASPWGAPVLFVKKKDGSFRMCIDY</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="26340" PGL_stop="26164"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="26340" e_stop="26164"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.938">
            <gDNA_exon_boundary e_start="26340" e_stop="26164" e_length="177"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="26340" stop="26164"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577888" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTACATCTCCTACCATACAATGCTTCAAATGGGGCCATATTAATGCTTGAGTGATAGCTATTATTGTATGAAAACTCTGCTAAGGGTAAGAAGCTATCCCAATGACCACCAAACTCTATCACACACGCACGAAGCATATCCTCCAACACTTGAATTGTCCTTTCAGACTGGCCATCG</gDNA_template>
            <first_frame> L  H  L  L  P  Y  N  A  S  N  G  A  I  L  M  L  E  *  *  L  L  L  Y  E  N  S  A  K  G  K  K  L  S  Q  *  P  P  N  S  I  T  H  A  R  S  I  S  S  N  T  *  I  V  L  S  D  W  P  S </first_frame>
            <second_frame>  Y  I  S  Y  H  T  M  L  Q  M  G  P  Y  *  C  L  S  D  S  Y  Y  C  M  K  T  L  L  R  V  R  S  Y  P  N  D  H  Q  T  L  S  H  T  H  E  A  Y  P  P  T  L  E  L  S  F  Q  T  G  H   </second_frame>
            <third_frame>   T  S  P  T  I  Q  C  F  K  W  G  H  I  N  A  *  V  I  A  I  I  V  *  K  L  C  *  G  *  E  A  I  P  M  T  T  K  L  Y  H  T  R  T  K  H  I  L  Q  H  L  N  C  P  F  R  L  A  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0034P15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="33032" PGL_stop="34957"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="33032" e_stop="33424"/>
            <exon e_start="34568" e_stop="34957"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.994" e_score="0.997"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="33032" e_stop="33424" e_length="393"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.994">
            <gDNA_intron_boundary i_start="33425" i_stop="34567" i_length="1143"/>
          </intron>
          <exon e_serial="2" e_score="0.981">
            <gDNA_exon_boundary e_start="34568" e_stop="34957" e_length="390"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33032" stop="33424"/>
              <exon start="34568" stop="34899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33068" stop="33424"/>
              <exon start="34568" stop="34957"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E453790" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33075" stop="33424"/>
              <exon start="34568" stop="34868"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602119" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33089" stop="33424"/>
              <exon start="34568" stop="34886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E459417" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33090" stop="33424"/>
              <exon start="34568" stop="34937"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E484585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33090" stop="33424"/>
              <exon start="34568" stop="34884"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E575915" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33090" stop="33424"/>
              <exon start="34568" stop="34873"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E565760" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33091" stop="33424"/>
              <exon start="34568" stop="34870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33093" stop="33424"/>
              <exon start="34568" stop="34667"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362260" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33096" stop="33424"/>
              <exon start="34568" stop="34711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E280561" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33096" stop="33400"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E466875" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33102" stop="33424"/>
              <exon start="34568" stop="34720"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E361991" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33109" stop="33424"/>
              <exon start="34568" stop="34935"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406015" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33123" stop="33424"/>
              <exon start="34568" stop="34870"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E350851" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33144" stop="33424"/>
              <exon start="34568" stop="34899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33146" stop="33424"/>
              <exon start="34568" stop="34911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E690794" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33167" stop="33424"/>
              <exon start="34568" stop="34714"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282374" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33191" stop="33424"/>
              <exon start="34568" stop="34896"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E558268" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33236" stop="33424"/>
              <exon start="34568" stop="34907"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291789" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33236" stop="33424"/>
              <exon start="34568" stop="34606"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E290697" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="33240" stop="33424"/>
              <exon start="34568" stop="34938"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E609856" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAGCTCATAACATTTCTAATCAAGCGAACCAAAAAAAAATCATTCAGATAAAAAGGAACAAGAACGCCCCCTTTTTCCAATTTAGGGTTTCTTCCTTCTCCAATCGAAGTTTGAGAGAAGCGATTCAATCGAACAACCATGCCGAAGAACAAGGGTAAGGGAGGTAAGAACAGGAAGAGAGGAAAGAATGAAGCCGATGATGAGAAAAGAGAGCTTGTTTTCAAAGAAGATGGACAGGAATATGCTCAGGTCCTTCGTATGCTTGGTAATGGACGATGTGAAGCTATGTGTATTGATGGAACTAAGCGTCTTTGTCACATACGTGGTAAGATGCATAAGAAAGTATGGATCGCTGCTGGTGATATCATCCTTGTTGGCCTACGTGACTATCAG : GATGACAAAGCTGATGTGATCTTGAAGTACATGCCTGATGAGGCCAGGTTATTGAAGGCATATGGAGAGTTACCAGAGAACACAAGACTTAATGAGGGCATTGCTAATGGTCTTGATGAAGAGGATGAGGGTGCTGGTGATGATTACATTGAGTTTGAGGATGAAGACATTGATAAAATCTAATCTAAACTCAAAATTGTTGTTACTGAGGTCTATCATATGCCTTGCTAATATTTCTGTGGCGTTCTTTTTCCTTAAACATTGAAAAAGTATTTTTGTGTATCGTTTGAAGTTGTATGATTGAGTTTTGTGCATCAAAGTTCTGTCTGAAAATTTGTGCTTTCATGAAATGAATGCAATATTCTGGCTTGTTTCTATCCAGTTATGCAT</gDNA_template>
            <first_frame> *  L  I  T  F  L  I  K  R  T  K  K  K  S  F  R  *  K  G  T  R  T  P  P  F  S  N  L  G  F  L  P  S  P  I  E  V  *  E  K  R  F  N  R  T  T  M  P  K  N  K  G  K  G  G  K  N  R  K  R  G  K  N  E  A  D  D  E  K  R  E  L  V  F  K  E  D  G  Q  E  Y  A  Q  V  L  R  M  L  G  N  G  R  C  E  A  M  C  I  D  G  T  K  R  L  C  H  I  R  G  K  M  H  K  K  V  W  I  A  A  G  D  I  I  L  V  G  L  R  D  Y  Q  :  D  D  K  A  D  V  I  L  K  Y  M  P  D  E  A  R  L  L  K  A  Y  G  E  L  P  E  N  T  R  L  N  E  G  I  A  N  G  L  D  E  E  D  E  G  A  G  D  D  Y  I  E  F  E  D  E  D  I  D  K  I  *  S  K  L  K  I  V  V  T  E  V  Y  H  M  P  C  *  Y  F  C  G  V  L  F  P  *  T  L  K  K  Y  F  C  V  S  F  E  V  V  *  L  S  F  V  H  Q  S  S  V  *  K  F  V  L  S  *  N  E  C  N  I  L  A  C  F  Y  P  V  M  H </first_frame>
            <second_frame>  S  S  *  H  F  *  S  S  E  P  K  K  N  H  S  D  K  K  E  Q  E  R  P  L  F  P  I  *  G  F  F  L  L  Q  S  K  F  E  R  S  D  S  I  E  Q  P  C  R  R  T  R  V  R  E  V  R  T  G  R  E  E  R  M  K  P  M  M  R  K  E  S  L  F  S  K  K  M  D  R  N  M  L  R  S  F  V  C  L  V  M  D  D  V  K  L  C  V  L  M  E  L  S  V  F  V  T  Y  V  V  R  C  I  R  K  Y  G  S  L  L  V  I  S  S  L  L  A  Y  V  T  I  R :   M  T  K  L  M  *  S  *  S  T  C  L  M  R  P  G  Y  *  R  H  M  E  S  Y  Q  R  T  Q  D  L  M  R  A  L  L  M  V  L  M  K  R  M  R  V  L  V  M  I  T  L  S  L  R  M  K  T  L  I  K  S  N  L  N  S  K  L  L  L  L  R  S  I  I  C  L  A  N  I  S  V  A  F  F  F  L  K  H  *  K  S  I  F  V  Y  R  L  K  L  Y  D  *  V  L  C  I  K  V  L  S  E  N  L  C  F  H  E  M  N  A  I  F  W  L  V  S  I  Q  L  C   </second_frame>
            <third_frame>   A  H  N  I  S  N  Q  A  N  Q  K  K  I  I  Q  I  K  R  N  K  N  A  P  F  F  Q  F  R  V  S  S  F  S  N  R  S  L  R  E  A  I  Q  S  N  N  H  A  E  E  Q  G  *  G  R  *  E  Q  E  E  R  K  E  *  S  R  *  *  E  K  R  A  C  F  Q  R  R  W  T  G  I  C  S  G  P  S  Y  A  W  *  W  T  M  *  S  Y  V  Y  *  W  N  *  A  S  L  S  H  T  W  *  D  A  *  E  S  M  D  R  C  W  *  Y  H  P  C  W  P  T  *  L  S   : G  *  Q  S  *  C  D  L  E  V  H  A  *  *  G  Q  V  I  E  G  I  W  R  V  T  R  E  H  K  T  *  *  G  H  C  *  W  S  *  *  R  G  *  G  C  W  *  *  L  H  *  V  *  G  *  R  H  *  *  N  L  I  *  T  Q  N  C  C  Y  *  G  L  S  Y  A  L  L  I  F  L  W  R  S  F  S  L  N  I  E  K  V  F  L  C  I  V  *  S  C  M  I  E  F  C  A  S  K  F  C  L  K  I  C  A  F  M  K  *  M  Q  Y  S  G  L  F  L  S  S  Y  A  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="33146" stop="33424"/>
                    <exon start="34568" stop="34750"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EKRFNRTTMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIANGLDEEDEGAGDDYIEFEDEDIDKI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="40522" PGL_stop="36301"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="40522" e_stop="40312"/>
            <exon e_start="38218" e_stop="38009"/>
            <exon e_start="37918" e_stop="37761"/>
            <exon e_start="37014" e_stop="36744"/>
            <exon e_start="36665" e_stop="36301"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.972" e_score="1.000"/>
          <exon-intron don_prob="0.962" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.985" e_score="0.994"/>
          <exon-intron don_prob="0.990" acc_prob="0.999" e_score="1.000"/>
          <exon-only e_score="0.981"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="40522" e_stop="40312" e_length="211"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.972">
            <gDNA_intron_boundary i_start="40311" i_stop="38219" i_length="2093"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="38218" e_stop="38009" e_length="210"/>
          </exon>
          <intron i_serial="2" don_prob="0.962" acc_prob="1.000">
            <gDNA_intron_boundary i_start="38008" i_stop="37919" i_length="90"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="37918" e_stop="37761" e_length="158"/>
          </exon>
          <intron i_serial="3" don_prob="0.994" acc_prob="0.985">
            <gDNA_intron_boundary i_start="37760" i_stop="37015" i_length="746"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="37014" e_stop="36744" e_length="271"/>
          </exon>
          <intron i_serial="4" don_prob="0.990" acc_prob="0.999">
            <gDNA_intron_boundary i_start="36743" i_stop="36666" i_length="78"/>
          </intron>
          <exon e_serial="5" e_score="0.981">
            <gDNA_exon_boundary e_start="36665" e_stop="36301" e_length="365"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="40522" stop="40312"/>
              <exon start="38218" stop="38009"/>
              <exon start="37918" stop="37761"/>
              <exon start="37014" stop="36791"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710988" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="38173" stop="38009"/>
              <exon start="37918" stop="37761"/>
              <exon start="37014" stop="36839"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E399828" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="37857" stop="37761"/>
              <exon start="37014" stop="36744"/>
              <exon start="36665" stop="36301"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E538197" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATTTTAGTTATTATTATTATAACAACAACTTGTAATAATTTGGTGGAAAGCAAATGTGCATTTGAAGCAATTTTTAATTTTGGAGATTCAAATAGTGATACTGGTGGATTTAATGCTGCATTTCCATCTCAAGGGCCTCCTTATGGAATGACTTATTTTAAAAGACCAACTGGAAGGGCAAGTGATGGAAGAGTCATTGTGGATTTTCTTG : CTCAAGGATTAGGTTTGCCATATTTGAGTCCATATTTGCAATCAATTGGATCTGATTTCAGACATGGTGCCAACTTTGCAACATCAGCATCCACAGTGCTCATGCCACAAACATCATTATTTGTGTCAGGTGTTAGCCCTTTTTATCTAGGAATTCAACTCCAACAGTTCAAGCTATTTAAGACTAAAATTGATGAATTTCAGAGTAAAG : GTAACACTAATCTGCCTCCCTCAGACATATTTGGGAAATCTCTTTACACATTCTATATAGGTCAGAATGACTTCACTGGTGAGTTGGGAAGTAAAGGAATAGGTGGAGTGAAGGAGTACTTACCTCAAGTAGTTTCCCAAATTGCTAGCACTATCAAG : GAAATCTATGGATTAGGGGGAAGAACATTTTTGGTACTTAACCTTGCACCAATTGGATGTTACCCAGCATTTTTGGTAAAGCTCCCTCATGAAAGTTCTGATATTGATGAGTATGGATGCTTGATATCATACAACAATGCAGTTGTGGACTATAACAATATGCTTAAAGATGCATTGGCACAAACAAGAAAAGATCTTTCAGATGCAAATGTTATTTATGTGGACACTCATGCTGTCCTCTTGGAACTTTTCCAACACCCCACTTCACATG : GGTTAAAATATGGAAACAAAGCATGTTGTGGACAAGGAGGTGGTTCTTACAACTTTAACCAAGAAGTATACTGTGGAAATACCAAAGAGATAAATGGACAAACATTGTCAGCTACAGCATGTGAGGATCCATACAATTATGTGAGCTGGGATGGGATACATGCCACTGAAGCAGCAAACAAAATCACAGCAAATGTCATTCTCAATGAGGCTTCTATTTTTGATCCTCCATTTTCACTACATAAATTCTGTGATATTCAGACTGTAGGTTGATACATGATCCACAAGATGTTATAACTAGAAGAAACGAATAAATAGTGGTCATGTGTTTAATTAAAATTGACATTGATAAATAATGGATGCATT</gDNA_template>
            <first_frame> I  L  V  I  I  I  I  T  T  T  C  N  N  L  V  E  S  K  C  A  F  E  A  I  F  N  F  G  D  S  N  S  D  T  G  G  F  N  A  A  F  P  S  Q  G  P  P  Y  G  M  T  Y  F  K  R  P  T  G  R  A  S  D  G  R  V  I  V  D  F  L   : A  Q  G  L  G  L  P  Y  L  S  P  Y  L  Q  S  I  G  S  D  F  R  H  G  A  N  F  A  T  S  A  S  T  V  L  M  P  Q  T  S  L  F  V  S  G  V  S  P  F  Y  L  G  I  Q  L  Q  Q  F  K  L  F  K  T  K  I  D  E  F  Q  S  K   : G  N  T  N  L  P  P  S  D  I  F  G  K  S  L  Y  T  F  Y  I  G  Q  N  D  F  T  G  E  L  G  S  K  G  I  G  G  V  K  E  Y  L  P  Q  V  V  S  Q  I  A  S  T  I  K  :  E  I  Y  G  L  G  G  R  T  F  L  V  L  N  L  A  P  I  G  C  Y  P  A  F  L  V  K  L  P  H  E  S  S  D  I  D  E  Y  G  C  L  I  S  Y  N  N  A  V  V  D  Y  N  N  M  L  K  D  A  L  A  Q  T  R  K  D  L  S  D  A  N  V  I  Y  V  D  T  H  A  V  L  L  E  L  F  Q  H  P  T  S  H   : G  L  K  Y  G  N  K  A  C  C  G  Q  G  G  G  S  Y  N  F  N  Q  E  V  Y  C  G  N  T  K  E  I  N  G  Q  T  L  S  A  T  A  C  E  D  P  Y  N  Y  V  S  W  D  G  I  H  A  T  E  A  A  N  K  I  T  A  N  V  I  L  N  E  A  S  I  F  D  P  P  F  S  L  H  K  F  C  D  I  Q  T  V  G  *  Y  M  I  H  K  M  L  *  L  E  E  T  N  K  *  W  S  C  V  *  L  K  L  T  L  I  N  N  G  C  I </first_frame>
            <second_frame>  F  *  L  L  L  L  *  Q  Q  L  V  I  I  W  W  K  A  N  V  H  L  K  Q  F  L  I  L  E  I  Q  I  V  I  L  V  D  L  M  L  H  F  H  L  K  G  L  L  M  E  *  L  I  L  K  D  Q  L  E  G  Q  V  M  E  E  S  L  W  I  F  L  :  L  K  D  *  V  C  H  I  *  V  H  I  C  N  Q  L  D  L  I  S  D  M  V  P  T  L  Q  H  Q  H  P  Q  C  S  C  H  K  H  H  Y  L  C  Q  V  L  A  L  F  I  *  E  F  N  S  N  S  S  S  Y  L  R  L  K  L  M  N  F  R  V  K  :  V  T  L  I  C  L  P  Q  T  Y  L  G  N  L  F  T  H  S  I  *  V  R  M  T  S  L  V  S  W  E  V  K  E  *  V  E  *  R  S  T  Y  L  K  *  F  P  K  L  L  A  L  S  R :   K  S  M  D  *  G  E  E  H  F  W  Y  L  T  L  H  Q  L  D  V  T  Q  H  F  W  *  S  S  L  M  K  V  L  I  L  M  S  M  D  A  *  Y  H  T  T  M  Q  L  W  T  I  T  I  C  L  K  M  H  W  H  K  Q  E  K  I  F  Q  M  Q  M  L  F  M  W  T  L  M  L  S  S  W  N  F  S  N  T  P  L  H  M  :  G  *  N  M  E  T  K  H  V  V  D  K  E  V  V  L  T  T  L  T  K  K  Y  T  V  E  I  P  K  R  *  M  D  K  H  C  Q  L  Q  H  V  R  I  H  T  I  M  *  A  G  M  G  Y  M  P  L  K  Q  Q  T  K  S  Q  Q  M  S  F  S  M  R  L  L  F  L  I  L  H  F  H  Y  I  N  S  V  I  F  R  L  *  V  D  T  *  S  T  R  C  Y  N  *  K  K  R  I  N  S  G  H  V  F  N  *  N  *  H  *  *  I  M  D  A   </second_frame>
            <third_frame>   F  S  Y  Y  Y  Y  N  N  N  L  *  *  F  G  G  K  Q  M  C  I  *  S  N  F  *  F  W  R  F  K  *  *  Y  W  W  I  *  C  C  I  S  I  S  R  A  S  L  W  N  D  L  F  *  K  T  N  W  K  G  K  *  W  K  S  H  C  G  F  S  C :   S  R  I  R  F  A  I  F  E  S  I  F  A  I  N  W  I  *  F  Q  T  W  C  Q  L  C  N  I  S  I  H  S  A  H  A  T  N  I  I  I  C  V  R  C  *  P  F  L  S  R  N  S  T  P  T  V  Q  A  I  *  D  *  N  *  *  I  S  E  *  R :   *  H  *  S  A  S  L  R  H  I  W  E  I  S  L  H  I  L  Y  R  S  E  *  L  H  W  *  V  G  K  *  R  N  R  W  S  E  G  V  L  T  S  S  S  F  P  N  C  *  H  Y  Q   : G  N  L  W  I  R  G  K  N  I  F  G  T  *  P  C  T  N  W  M  L  P  S  I  F  G  K  A  P  S  *  K  F  *  Y  *  *  V  W  M  L  D  I  I  Q  Q  C  S  C  G  L  *  Q  Y  A  *  R  C  I  G  T  N  K  K  R  S  F  R  C  K  C  Y  L  C  G  H  S  C  C  P  L  G  T  F  P  T  P  H  F  T  W :   V  K  I  W  K  Q  S  M  L  W  T  R  R  W  F  L  Q  L  *  P  R  S  I  L  W  K  Y  Q  R  D  K  W  T  N  I  V  S  Y  S  M  *  G  S  I  Q  L  C  E  L  G  W  D  T  C  H  *  S  S  K  Q  N  H  S  K  C  H  S  Q  *  G  F  Y  F  *  S  S  I  F  T  T  *  I  L  *  Y  S  D  C  R  L  I  H  D  P  Q  D  V  I  T  R  R  N  E  *  I  V  V  M  C  L  I  K  I  D  I  D  K  *  W  M  H  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="40522" stop="40312"/>
                    <exon start="38218" stop="38009"/>
                    <exon start="37918" stop="37761"/>
                    <exon start="37014" stop="36744"/>
                    <exon start="36665" stop="36394"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1119</number_coding_nucleotides>
                  <number_encoded_amino_acids>373</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ILVIIIITTTCNNLVESKCAFEAIFNFGDSNSDTGGFNAAFPSQGPPYGMTYFKRPTGRASDGRVIVDFLAQGLGLPYLSPYLQSIGSDFRHGANFATSASTVLMPQTSLFVSGVSPFYLGIQLQQFKLFKTKIDEFQSKGNTNLPPSDIFGKSLYTFYIGQNDFTGELGSKGIGGVKEYLPQVVSQIASTIKEIYGLGGRTFLVLNLAPIGCYPAFLVKLPHESSDIDEYGCLISYNNAVVDYNNMLKDALAQTRKDLSDANVIYVDTHAVLLELFQHPTSHGLKYGNKACCGQGGGSYNFNQEVYCGNTKEINGQTLSATACEDPYNYVSWDGIHATEAANKITANVILNEASIFDPPFSLHKFCDIQTVG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="+" PGL_start="52881" PGL_stop="56101"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="52881" e_stop="53001"/>
            <exon e_start="53943" e_stop="54143"/>
            <exon e_start="54304" e_stop="54348"/>
            <exon e_start="54437" e_stop="54532"/>
            <exon e_start="54650" e_stop="54730"/>
            <exon e_start="55733" e_stop="55789"/>
            <exon e_start="55948" e_stop="56101"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.939" acc_prob="0.989" e_score="0.876"/>
          <exon-intron don_prob="0.994" acc_prob="0.968" e_score="0.940"/>
          <exon-intron don_prob="0.938" acc_prob="0.982" e_score="0.956"/>
          <exon-intron don_prob="0.999" acc_prob="0.681" e_score="0.958"/>
          <exon-intron don_prob="0.954" acc_prob="0.999" e_score="0.951"/>
          <exon-intron don_prob="1.000" acc_prob="0.337" e_score="0.912"/>
          <exon-only e_score="0.935"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.876">
            <gDNA_exon_boundary e_start="52881" e_stop="53001" e_length="121"/>
          </exon>
          <intron i_serial="1" don_prob="0.939" acc_prob="0.989">
            <gDNA_intron_boundary i_start="53002" i_stop="53942" i_length="941"/>
          </intron>
          <exon e_serial="2" e_score="0.940">
            <gDNA_exon_boundary e_start="53943" e_stop="54143" e_length="201"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.968">
            <gDNA_intron_boundary i_start="54144" i_stop="54303" i_length="160"/>
          </intron>
          <exon e_serial="3" e_score="0.956">
            <gDNA_exon_boundary e_start="54304" e_stop="54348" e_length="45"/>
          </exon>
          <intron i_serial="3" don_prob="0.938" acc_prob="0.982">
            <gDNA_intron_boundary i_start="54349" i_stop="54436" i_length="88"/>
          </intron>
          <exon e_serial="4" e_score="0.958">
            <gDNA_exon_boundary e_start="54437" e_stop="54532" e_length="96"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.681">
            <gDNA_intron_boundary i_start="54533" i_stop="54649" i_length="117"/>
          </intron>
          <exon e_serial="5" e_score="0.951">
            <gDNA_exon_boundary e_start="54650" e_stop="54730" e_length="81"/>
          </exon>
          <intron i_serial="5" don_prob="0.954" acc_prob="0.999">
            <gDNA_intron_boundary i_start="54731" i_stop="55732" i_length="1002"/>
          </intron>
          <exon e_serial="6" e_score="0.912">
            <gDNA_exon_boundary e_start="55733" e_stop="55789" e_length="57"/>
          </exon>
          <intron i_serial="6" don_prob="1.000" acc_prob="0.337">
            <gDNA_intron_boundary i_start="55790" i_stop="55947" i_length="158"/>
          </intron>
          <exon e_serial="7" e_score="0.935">
            <gDNA_exon_boundary e_start="55948" e_stop="56101" e_length="154"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52881" stop="53001"/>
              <exon start="53943" stop="54143"/>
              <exon start="54304" stop="54348"/>
              <exon start="54437" stop="54532"/>
              <exon start="54650" stop="54730"/>
              <exon start="55733" stop="55789"/>
              <exon start="55948" stop="56101"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E431321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52881" stop="53001"/>
              <exon start="53943" stop="54143"/>
              <exon start="54304" stop="54348"/>
              <exon start="54437" stop="54532"/>
              <exon start="54650" stop="54730"/>
              <exon start="55733" stop="55789"/>
              <exon start="55948" stop="55960"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E463883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="52984" stop="53001"/>
              <exon start="53943" stop="54143"/>
              <exon start="54304" stop="54348"/>
              <exon start="54437" stop="54532"/>
              <exon start="54650" stop="54730"/>
              <exon start="55733" stop="55789"/>
              <exon start="55948" stop="56054"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479927" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="54530" stop="54532"/>
              <exon start="54650" stop="54730"/>
              <exon start="55733" stop="55789"/>
              <exon start="55948" stop="56011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E478626" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTTATATATATTATATATTTGAAATTTATTTTTCTCTCTAGACAAAGAGAAAGTAATACAAAATGCAGAAAGTTTGAGGCAAAAACTGCAAAATTCCATCAATTAAATCTCAATTTAAG : TTGGCATAATAATCTTGGTTAGCATACCTCCAACAACTACTACGCGCAAGTCCCAAACAAGTTGTTATATTGTTAGTACCTCCTAAAGGAAATAATCATCTCATCAGTGAATTTGTAGAGTGTCTAGTTGTTTTCTGACACATGGGAAATATTGAGGACAGGAAGTCTTCTACGCCTGAGAAATCATTTTCGACTGCACCA : GATCAAAGCAGTTTTCATGTGTATCCTGATTGGGCTGTGATGCAG : GCATATTATGCCCATCGAGTAGCTGTACCTCCATATGTTAGTTCTGCTGTTGCACCTGGTCATGCTCCTCATCCTTATATGTGGGGCCCGCTACCG : CCTATGTTTCCACCTTATGGCACACCATATGCAGGAGTCTATGCACATGGTGGTGTTTATCCGCACTCTGGAGTTCCTATT : GTGTTCCGTCCTCAGGCGCATGGAATGACATCATCTCCCGTTGTTAGCCAAACCAAG : AATACTGCTTCTTTGGGTATGGATACTTCTGCTAAGTCTTCGGGGAACTCTGATCAAGGCTTGACGAGTCAGTCAAAAGGGTTTGATGGGCTTGGAATCTCAATAGGGAATCACAGTGTTGACAATGGTGCTGGCACTGACCATGGACCTTCGC</gDNA_template>
            <first_frame> F  L  Y  I  L  Y  I  *  N  L  F  F  S  L  D  K  E  K  V  I  Q  N  A  E  S  L  R  Q  K  L  Q  N  S  I  N  *  I  S  I  *   : V  G  I  I  I  L  V  S  I  P  P  T  T  T  T  R  K  S  Q  T  S  C  Y  I  V  S  T  S  *  R  K  *  S  S  H  Q  *  I  C  R  V  S  S  C  F  L  T  H  G  K  Y  *  G  Q  E  V  F  Y  A  *  E  I  I  F  D  C  T   : R  S  K  Q  F  S  C  V  S  *  L  G  C  D  A   : G  I  L  C  P  S  S  S  C  T  S  I  C  *  F  C  C  C  T  W  S  C  S  S  S  L  Y  V  G  P  A  T   : A  Y  V  S  T  L  W  H  T  I  C  R  S  L  C  T  W  W  C  L  S  A  L  W  S  S  Y   : C  V  P  S  S  G  A  W  N  D  I  I  S  R  C  *  P  N  Q   : E  Y  C  F  F  G  Y  G  Y  F  C  *  V  F  G  E  L  *  S  R  L  D  E  S  V  K  R  V  *  W  A  W  N  L  N  R  E  S  Q  C  *  Q  W  C  W  H  *  P  W  T  F   </first_frame>
            <second_frame>  S  Y  I  Y  Y  I  F  E  I  Y  F  S  L  *  T  K  R  K  *  Y  K  M  Q  K  V  *  G  K  N  C  K  I  P  S  I  K  S  Q  F  K  :  L  A  *  *  S  W  L  A  Y  L  Q  Q  L  L  R  A  S  P  K  Q  V  V  I  L  L  V  P  P  K  G  N  N  H  L  I  S  E  F  V  E  C  L  V  V  F  *  H  M  G  N  I  E  D  R  K  S  S  T  P  E  K  S  F  S  T  A  P  :  D  Q  S  S  F  H  V  Y  P  D  W  A  V  M  Q  :  A  Y  Y  A  H  R  V  A  V  P  P  Y  V  S  S  A  V  A  P  G  H  A  P  H  P  Y  M  W  G  P  L  P  :  P  M  F  P  P  Y  G  T  P  Y  A  G  V  Y  A  H  G  G  V  Y  P  H  S  G  V  P  I  :  V  F  R  P  Q  A  H  G  M  T  S  S  P  V  V  S  Q  T  K  :  N  T  A  S  L  G  M  D  T  S  A  K  S  S  G  N  S  D  Q  G  L  T  S  Q  S  K  G  F  D  G  L  G  I  S  I  G  N  H  S  V  D  N  G  A  G  T  D  H  G  P  S  </second_frame>
            <third_frame>   L  I  Y  I  I  Y  L  K  F  I  F  L  S  R  Q  R  E  S  N  T  K  C  R  K  F  E  A  K  T  A  K  F  H  Q  L  N  L  N  L  S :   W  H  N  N  L  G  *  H  T  S  N  N  Y  Y  A  Q  V  P  N  K  L  L  Y  C  *  Y  L  L  K  E  I  I  I  S  S  V  N  L  *  S  V  *  L  F  S  D  T  W  E  I  L  R  T  G  S  L  L  R  L  R  N  H  F  R  L  H  Q :   I  K  A  V  F  M  C  I  L  I  G  L  *  C  R :   H  I  M  P  I  E  *  L  Y  L  H  M  L  V  L  L  L  H  L  V  M  L  L  I  L  I  C  G  A  R  Y  R :   L  C  F  H  L  M  A  H  H  M  Q  E  S  M  H  M  V  V  F  I  R  T  L  E  F  L  L :   C  S  V  L  R  R  M  E  *  H  H  L  P  L  L  A  K  P  R :   I  L  L  L  W  V  W  I  L  L  L  S  L  R  G  T  L  I  K  A  *  R  V  S  Q  K  G  L  M  G  L  E  S  Q  *  G  I  T  V  L  T  M  V  L  A  L  T  M  D  L  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="54081" stop="54143"/>
                    <exon start="54304" stop="54348"/>
                    <exon start="54437" stop="54532"/>
                    <exon start="54650" stop="54730"/>
                    <exon start="55733" stop="55789"/>
                    <exon start="55948" stop="56100"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>495</number_coding_nucleotides>
                  <number_encoded_amino_acids>165</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>HMGNIEDRKSSTPEKSFSTAPDQSSFHVYPDWAVMQAYYAHRVAVPPYVSSAVAPGHAPHPYMWGPLPPMFPPYGTPYAGVYAHGGVYPHSGVPIVFRPQAHGMTSSPVVSQTKNTASLGMDTSAKSSGNSDQGLTSQSKGFDGLGISIGNHSVDNGAGTDHGPS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="56673" PGL_stop="58723"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="56673" e_stop="56710"/>
            <exon e_start="57679" e_stop="57896"/>
            <exon e_start="58049" e_stop="58126"/>
            <exon e_start="58261" e_stop="58386"/>
            <exon e_start="58467" e_stop="58723"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.000" e_score="0.970"/>
          <exon-intron don_prob="0.993" acc_prob="1.000" e_score="0.917"/>
          <exon-intron don_prob="0.995" acc_prob="0.977" e_score="0.987"/>
          <exon-intron don_prob="0.906" acc_prob="0.998" e_score="0.960"/>
          <exon-only e_score="0.930"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.970">
            <gDNA_exon_boundary e_start="56673" e_stop="56710" e_length="38"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.000">
            <gDNA_intron_boundary i_start="56711" i_stop="57678" i_length="968"/>
          </intron>
          <exon e_serial="2" e_score="0.917">
            <gDNA_exon_boundary e_start="57679" e_stop="57896" e_length="218"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="1.000">
            <gDNA_intron_boundary i_start="57897" i_stop="58048" i_length="152"/>
          </intron>
          <exon e_serial="3" e_score="0.987">
            <gDNA_exon_boundary e_start="58049" e_stop="58126" e_length="78"/>
          </exon>
          <intron i_serial="3" don_prob="0.995" acc_prob="0.977">
            <gDNA_intron_boundary i_start="58127" i_stop="58260" i_length="134"/>
          </intron>
          <exon e_serial="4" e_score="0.960">
            <gDNA_exon_boundary e_start="58261" e_stop="58386" e_length="126"/>
          </exon>
          <intron i_serial="4" don_prob="0.906" acc_prob="0.998">
            <gDNA_intron_boundary i_start="58387" i_stop="58466" i_length="80"/>
          </intron>
          <exon e_serial="5" e_score="0.930">
            <gDNA_exon_boundary e_start="58467" e_stop="58723" e_length="257"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56673" stop="56710"/>
              <exon start="57679" stop="57896"/>
              <exon start="58049" stop="58126"/>
              <exon start="58261" stop="58386"/>
              <exon start="58467" stop="58484"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E430521" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="56678" stop="56710"/>
              <exon start="57679" stop="57896"/>
              <exon start="58049" stop="58126"/>
              <exon start="58261" stop="58386"/>
              <exon start="58467" stop="58723"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E462010" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CAGTAAGAAAAGAAGCCGCGAGTCAACTCCTAATAACT : CTGGTGAAGGAAAAAGTCAAAGAATGTGCAGTCCACAACGTACTAGGGAAGTAAATGGGGCCTCAGAGAATGGAATTGGCATAGCTGTTAATCCTGGTATTATAGCAGAAAAGTTAGCGGGAACAACATTTTCTCCGATTATGACTACTACTCCACTAGTAAAATCTAGTCCAACTTCACAAATCTGTCCTGCAATGCCGGGTGAAGTCTGGTTACAG : AATGAACGTGAGCTGAAGCGGGAGAAGAGGAAGCAGTCTAATCGAGAATCTGCAAGGAGATCAAGGTTGAGAAAGCAG : GCGGAAGCAGAAGAATTGGCAGTGCAGGTTCAATCTTTAACCTCTGAAAATTTGGCACTCAGATCAGAAATAAACAAATTCACCGAAAACTCTGAGAAACTAAAGTTTGAAAATGTTGGTTTAATG : GAGAGACTAAAAAACAAGCAAGGACAAGCAAAAGAGGTAACTTTAGGTATGATTGATGATAAGAGGCTGAAGCCTGTTAGCACAGCAGACCTACTAGCAAGAGTCAACAATAACAATGGTTCATTCAGTAGAACCAACGAAGACGGTGAAGTTCATGATAGTACCTCTGGAGCGAAGCTTCATCAACTCCTTGATGCTAGTTCCAGGACTGATCATGCTGTGGCTGCTAGATGATCATAATATTCATGATCATGGCG</gDNA_template>
            <first_frame> Q  *  E  K  K  P  R  V  N  S  *  *  L :   W  *  R  K  K  S  K  N  V  Q  S  T  T  Y  *  G  S  K  W  G  L  R  E  W  N  W  H  S  C  *  S  W  Y  Y  S  R  K  V  S  G  N  N  I  F  S  D  Y  D  Y  Y  S  T  S  K  I  *  S  N  F  T  N  L  S  C  N  A  G  *  S  L  V  T   : E  *  T  *  A  E  A  G  E  E  E  A  V  *  S  R  I  C  K  E  I  K  V  E  K  A   : G  G  S  R  R  I  G  S  A  G  S  I  F  N  L  *  K  F  G  T  Q  I  R  N  K  Q  I  H  R  K  L  *  E  T  K  V  *  K  C  W  F  N   : G  E  T  K  K  Q  A  R  T  S  K  R  G  N  F  R  Y  D  *  *  *  E  A  E  A  C  *  H  S  R  P  T  S  K  S  Q  Q  *  Q  W  F  I  Q  *  N  Q  R  R  R  *  S  S  *  *  Y  L  W  S  E  A  S  S  T  P  *  C  *  F  Q  D  *  S  C  C  G  C  *  M  I  I  I  F  M  I  M  A </first_frame>
            <second_frame>  S  K  K  R  S  R  E  S  T  P  N  N   : S  G  E  G  K  S  Q  R  M  C  S  P  Q  R  T  R  E  V  N  G  A  S  E  N  G  I  G  I  A  V  N  P  G  I  I  A  E  K  L  A  G  T  T  F  S  P  I  M  T  T  T  P  L  V  K  S  S  P  T  S  Q  I  C  P  A  M  P  G  E  V  W  L  Q  :  N  E  R  E  L  K  R  E  K  R  K  Q  S  N  R  E  S  A  R  R  S  R  L  R  K  Q  :  A  E  A  E  E  L  A  V  Q  V  Q  S  L  T  S  E  N  L  A  L  R  S  E  I  N  K  F  T  E  N  S  E  K  L  K  F  E  N  V  G  L  M  :  E  R  L  K  N  K  Q  G  Q  A  K  E  V  T  L  G  M  I  D  D  K  R  L  K  P  V  S  T  A  D  L  L  A  R  V  N  N  N  N  G  S  F  S  R  T  N  E  D  G  E  V  H  D  S  T  S  G  A  K  L  H  Q  L  L  D  A  S  S  R  T  D  H  A  V  A  A  R  *  S  *  Y  S  *  S  W   </second_frame>
            <third_frame>   V  R  K  E  A  A  S  Q  L  L  I  T  :  L  V  K  E  K  V  K  E  C  A  V  H  N  V  L  G  K  *  M  G  P  Q  R  M  E  L  A  *  L  L  I  L  V  L  *  Q  K  S  *  R  E  Q  H  F  L  R  L  *  L  L  L  H  *  *  N  L  V  Q  L  H  K  S  V  L  Q  C  R  V  K  S  G  Y  R :   M  N  V  S  *  S  G  R  R  G  S  S  L  I  E  N  L  Q  G  D  Q  G  *  E  S  R :   R  K  Q  K  N  W  Q  C  R  F  N  L  *  P  L  K  I  W  H  S  D  Q  K  *  T  N  S  P  K  T  L  R  N  *  S  L  K  M  L  V  *  W :   R  D  *  K  T  S  K  D  K  Q  K  R  *  L  *  V  *  L  M  I  R  G  *  S  L  L  A  Q  Q  T  Y  *  Q  E  S  T  I  T  M  V  H  S  V  E  P  T  K  T  V  K  F  M  I  V  P  L  E  R  S  F  I  N  S  L  M  L  V  P  G  L  I  M  L  W  L  L  D  D  H  N  I  H  D  H  G  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="56674" stop="56710"/>
                    <exon start="57679" stop="57896"/>
                    <exon start="58049" stop="58126"/>
                    <exon start="58261" stop="58386"/>
                    <exon start="58467" stop="58700"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>690</number_coding_nucleotides>
                  <number_encoded_amino_acids>230</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SKKRSRESTPNNSGEGKSQRMCSPQRTREVNGASENGIGIAVNPGIIAEKLAGTTFSPIMTTTPLVKSSPTSQICPAMPGEVWLQNERELKREKRKQSNRESARRSRLRKQAEAEELAVQVQSLTSENLALRSEINKFTENSEKLKFENVGLMERLKNKQGQAKEVTLGMIDDKRLKPVSTADLLARVNNNNGSFSRTNEDGEVHDSTSGAKLHQLLDASSRTDHAVAAR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="64227" PGL_stop="68375"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="64227" e_stop="64337"/>
            <exon e_start="64433" e_stop="64524"/>
            <exon e_start="65585" e_stop="65712"/>
            <exon e_start="66844" e_stop="66948"/>
            <exon e_start="67426" e_stop="67886"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64227" e_stop="64337" e_length="111"/>
          </exon>
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              <exon start="64309" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64309" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64310" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64310" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64313" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64313" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64313" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64313" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64314" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64316" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64318" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64318" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64318" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64319" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64321" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64321" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64324" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64324" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64325" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64329" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64332" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257633" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64334" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64437" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64437" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64437" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64443" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64461" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64461" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64489" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64497" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64498" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64505" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276597" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65600" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65634" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65638" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405423" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65644" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348075" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65646" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287372" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65693" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65699" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66886" stop="66948"/>
              <exon start="67426" stop="67711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66901" stop="66948"/>
              <exon start="67426" stop="67886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66901" stop="66948"/>
              <exon start="67426" stop="67832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66910" stop="66948"/>
              <exon start="67426" stop="67842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66912" stop="66948"/>
              <exon start="67426" stop="67783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66926" stop="66948"/>
              <exon start="67426" stop="67780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67439" stop="67830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67443" stop="67886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67490" stop="67886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237331" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAAAACAGCTGCAAATAAAAAGAAAAAAAAAAGTGATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG : ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG : GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG : GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG : GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAAATTCTACCGTGTTTATTAATACGGATAACTATAGTTCAACCTGG</gDNA_template>
            <first_frame> K  K  N  S  C  K  *  K  E  K  K  K  *  Y  I  P  Q  P  N  F  I  Y  *  F  R  V  K  S  Q  Q  L  F  R  F  S  D  Q  :  I  Q  I  C  L  D  F  D  G  F  E  T  N  I  E  G  A  E  G  S  P  E  G  S  S  Y  F  M  Q  R  W :   P  C  W  R  G  H  V  S  L  A  G  Y  N  N  G  A  L  *  *  P  L  C  W  G  C  F  F  G  H  D  P  F  S  S  G  L  S  I  Q  A  S  *   : G  C  F  *  D  K  S  F  P  S  K  Y  Q  *  Q  W  E  Y  M  L  G  H  T  E  G  A  V  E  P  C  I  N  Y  F  Q   : G  F  A  F  N  L  L  T  F  D  G  P  K  P  *  R  P  L  G  S  *  D  C  S  H  V  Q  D  *  Q  V  Q  I  R  R  N  R  Q  E  L  D  P  E  V  C  H  G  L  K  N  L  T  L  *  W  L  E  L  I  *  T  K  T  N  F  K  C  F  I  F  S  I  L  H  *  Q  C  V  E  *  H  *  A  L  L  L  Y  R  K  N  D  N  A  L  N  L  F  M  Y  E  Y  *  Y  L  N  F  E  H  V  W  E  A  Y  V  S  A  F  *  L  F  L  L  V  *  R  S  I  C  V  I  N  S  I  L  Q  K  P  F  V  N  S  T  V  F  I  N  T  D  N  Y  S  S  T  W </first_frame>
            <second_frame>  K  K  T  A  A  N  K  K  K  K  K  S  D  I  F  L  N  P  I  S  S  T  S  F  A  *  R  V  S  S  F  S  D  F  L  I  R :   F  R  F  V  W  I  L  M  A  S  K  R  I  L  K  E  L  K  D  L  Q  K  D  P  P  T  S  C  S  A   : G  P  V  G  E  D  M  F  H  W  Q  A  T  I  M  G  P  S  D  S  P  Y  A  G  G  V  F  L  V  T  I  H  F  P  P  D  Y  P  F  K  P  P  K  :  V  A  F  R  T  K  V  F  H  P  N  I  N  S  N  G  S  I  C  L  D  I  L  K  E  Q  W  S  P  A  L  T  I  S  K  :  V  L  L  S  I  C  S  L  L  T  D  P  N  P  D  D  P  L  V  P  E  I  A  H  M  Y  K  T  D  K  S  K  Y  E  G  T  A  R  S  W  T  Q  K  Y  A  M  G  *  K  I  *  P  Y  D  G  L  N  *  Y  K  Q  K  Q  I  S  N  V  L  S  S  L  F  S  I  N  N  V  *  N  S  I  R  R  C  F  S  T  G  R  T  I  M  L  *  I  C  L  C  M  N  T  N  I  *  T  L  N  M  C  G  K  R  M  Y  L  L  F  D  C  F  C  W  F  D  D  Q  F  V  *  L  I  P  Y  F  K  S  L  L  *  I  L  P  C  L  L  I  R  I  T  I  V  Q  P   </second_frame>
            <third_frame>   K  K  Q  L  Q  I  K  R  K  K  K  V  I  Y  S  S  T  Q  F  H  L  L  V  S  R  K  E  S  A  A  F  P  I  F  *  S   : D  S  D  L  F  G  F  *  W  L  R  N  E  Y  *  R  S  *  R  I  S  R  R  I  L  L  L  H  A  A  L  :  A  L  L  E  R  T  C  F  T  G  R  L  Q  *  W  G  P  L  I  A  L  M  L  G  V  F  F  W  S  R  S  I  F  L  R  I  I  H  S  S  L  L  R :   L  L  L  G  Q  K  F  S  I  Q  I  S  I  A  M  G  V  Y  A  W  T  Y  *  R  S  S  G  A  L  H  *  L  F  P  R :   F  C  F  Q  F  A  H  F  *  R  T  Q  T  L  T  T  P  W  F  L  R  L  L  T  C  T  R  L  T  S  P  N  T  K  E  P  P  G  V  G  P  R  S  M  P  W  V  K  K  F  N  P  M  M  A  *  T  D  I  N  K  N  K  F  Q  M  F  Y  L  L  Y  S  P  L  T  M  C  R  I  A  L  G  V  A  S  L  Q  E  E  R  *  C  F  E  F  V  Y  V  *  I  L  I  F  E  L  *  T  C  V  G  S  V  C  I  C  F  L  T  V  S  V  G  L  T  I  N  L  C  N  *  F  H  T  S  K  A  F  C  K  F  Y  R  V  Y  *  Y  G  *  L  *  F  N  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64306" stop="64337"/>
                    <exon start="64433" stop="64524"/>
                    <exon start="65585" stop="65712"/>
                    <exon start="66844" stop="66948"/>
                    <exon start="67426" stop="67569"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVSSFSDFLIRFRFVWILMASKRILKELKDLQKDPPTSCSAGPVGEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKSKYEGTARSWTQKYAMG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="64253" e_stop="64337"/>
            <exon e_start="64433" e_stop="64524"/>
            <exon e_start="65585" e_stop="65712"/>
            <exon e_start="66844" e_stop="66948"/>
            <exon e_start="67426" e_stop="67781"/>
            <exon e_start="68363" e_stop="68375"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.979" e_score="1.000"/>
          <exon-only e_score="0.615"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64253" e_stop="64337" e_length="85"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64433" e_stop="64524" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65585" e_stop="65712" e_length="128"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="0.997">
            <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="66844" e_stop="66948" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.972" acc_prob="0.975">
            <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="67426" e_stop="67781" e_length="356"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.979">
            <gDNA_intron_boundary i_start="67782" i_stop="68362" i_length="581"/>
          </intron>
          <exon e_serial="6" e_score="0.615">
            <gDNA_exon_boundary e_start="68363" e_stop="68375" e_length="13"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64253" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67597"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E311018" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64254" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E346495" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64256" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246396" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64256" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246546" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64258" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67742"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E597300" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64258" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273461" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64258" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64260" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64260" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64263" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67653"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E351493" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64264" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247985" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64264" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64265" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67638"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270068" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64265" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E271287" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64269" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67777"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E735193" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64270" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67775"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343979" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64272" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67708"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E693509" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64272" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64273" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208682" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64274" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67648"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250814" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64287" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67724"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E579874" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64290" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67524"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273937" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64293" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345306" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64293" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E246507" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64293" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
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              <exon start="67426" stop="67587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245556" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64296" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
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              <exon start="67426" stop="67746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E358277" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64296" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64297" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67771"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257244" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64297" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257681" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64297" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
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              <exon start="67426" stop="67476"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272102" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64297" stop="64337"/>
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            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64297" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64302" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
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              <exon start="67426" stop="67645"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E235759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64302" stop="64337"/>
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              <exon start="67426" stop="67587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233104" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64302" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256321" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64302" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E240516" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64302" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67477"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E291560" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64302" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67454"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237729" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64302" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64302" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64303" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E304885" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64304" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E259224" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64307" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67781"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262855" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64307" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64308" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733179" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64309" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67746"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714983" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64309" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67549"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E603938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64310" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67696"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E299039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64313" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67730"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207832" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64313" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E205987" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64313" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67631"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E214022" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64313" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67517"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209170" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64314" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721124" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64316" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255912" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64318" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64318" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67718"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E313583" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64318" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67587"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302709" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64319" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64321" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67755"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256866" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64321" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67650"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252557" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64324" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67776"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348647" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64324" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67500"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274084" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64325" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67498"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E298111" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64329" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67586"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287362" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64332" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257633" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64334" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67513"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275016" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64437" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67752"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257092" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64437" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67684"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251528" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64437" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67656"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253842" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64461" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64505" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276597" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65600" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65634" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65638" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405423" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65646" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67781"/>
              <exon start="68363" stop="68375"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65646" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287372" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65693" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65699" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66886" stop="66948"/>
              <exon start="67426" stop="67711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66926" stop="66948"/>
              <exon start="67426" stop="67780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221345" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAAAAAAGTGATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG : ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG : GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG : GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG : GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTG : TTAGTAGATAATA</gDNA_template>
            <first_frame> K  K  K  V  I  Y  S  S  T  Q  F  H  L  L  V  S  R  K  E  S  A  A  F  P  I  F  *  S   : D  S  D  L  F  G  F  *  W  L  R  N  E  Y  *  R  S  *  R  I  S  R  R  I  L  L  L  H  A  A  L  :  A  L  L  E  R  T  C  F  T  G  R  L  Q  *  W  G  P  L  I  A  L  M  L  G  V  F  F  W  S  R  S  I  F  L  R  I  I  H  S  S  L  L  R :   L  L  L  G  Q  K  F  S  I  Q  I  S  I  A  M  G  V  Y  A  W  T  Y  *  R  S  S  G  A  L  H  *  L  F  P  R :   F  C  F  Q  F  A  H  F  *  R  T  Q  T  L  T  T  P  W  F  L  R  L  L  T  C  T  R  L  T  S  P  N  T  K  E  P  P  G  V  G  P  R  S  M  P  W  V  K  K  F  N  P  M  M  A  *  T  D  I  N  K  N  K  F  Q  M  F  Y  L  L  Y  S  P  L  T  M  C  R  I  A  L  G  V  A  S  L  Q  E  E  R  *  C  F  E  F  V  Y  V  *  I  L  I  F  E  L  *  T  C  V  G  S  V  C  I  C  F  L  T   : V  S  R  *   </first_frame>
            <second_frame>  K  K  K  *  Y  I  P  Q  P  N  F  I  Y  *  F  R  V  K  S  Q  Q  L  F  R  F  S  D  Q  :  I  Q  I  C  L  D  F  D  G  F  E  T  N  I  E  G  A  E  G  S  P  E  G  S  S  Y  F  M  Q  R  W :   P  C  W  R  G  H  V  S  L  A  G  Y  N  N  G  A  L  *  *  P  L  C  W  G  C  F  F  G  H  D  P  F  S  S  G  L  S  I  Q  A  S  *   : G  C  F  *  D  K  S  F  P  S  K  Y  Q  *  Q  W  E  Y  M  L  G  H  T  E  G  A  V  E  P  C  I  N  Y  F  Q   : G  F  A  F  N  L  L  T  F  D  G  P  K  P  *  R  P  L  G  S  *  D  C  S  H  V  Q  D  *  Q  V  Q  I  R  R  N  R  Q  E  L  D  P  E  V  C  H  G  L  K  N  L  T  L  *  W  L  E  L  I  *  T  K  T  N  F  K  C  F  I  F  S  I  L  H  *  Q  C  V  E  *  H  *  A  L  L  L  Y  R  K  N  D  N  A  L  N  L  F  M  Y  E  Y  *  Y  L  N  F  E  H  V  W  E  A  Y  V  S  A  F  *  L  :  L  V  D  N  </second_frame>
            <third_frame>   K  K  S  D  I  F  L  N  P  I  S  S  T  S  F  A  *  R  V  S  S  F  S  D  F  L  I  R :   F  R  F  V  W  I  L  M  A  S  K  R  I  L  K  E  L  K  D  L  Q  K  D  P  P  T  S  C  S  A   : G  P  V  G  E  D  M  F  H  W  Q  A  T  I  M  G  P  S  D  S  P  Y  A  G  G  V  F  L  V  T  I  H  F  P  P  D  Y  P  F  K  P  P  K  :  V  A  F  R  T  K  V  F  H  P  N  I  N  S  N  G  S  I  C  L  D  I  L  K  E  Q  W  S  P  A  L  T  I  S  K  :  V  L  L  S  I  C  S  L  L  T  D  P  N  P  D  D  P  L  V  P  E  I  A  H  M  Y  K  T  D  K  S  K  Y  E  G  T  A  R  S  W  T  Q  K  Y  A  M  G  *  K  I  *  P  Y  D  G  L  N  *  Y  K  Q  K  Q  I  S  N  V  L  S  S  L  F  S  I  N  N  V  *  N  S  I  R  R  C  F  S  T  G  R  T  I  M  L  *  I  C  L  C  M  N  T  N  I  *  T  L  N  M  C  G  K  R  M  Y  L  L  F  D  C :   *  *  I  I </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64306" stop="64337"/>
                    <exon start="64433" stop="64524"/>
                    <exon start="65585" stop="65712"/>
                    <exon start="66844" stop="66948"/>
                    <exon start="67426" stop="67569"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>498</number_coding_nucleotides>
                  <number_encoded_amino_acids>166</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVSSFSDFLIRFRFVWILMASKRILKELKDLQKDPPTSCSAGPVGEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKSKYEGTARSWTQKYAMG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="64273" e_stop="64337"/>
            <exon e_start="64439" e_stop="64524"/>
            <exon e_start="65585" e_stop="65712"/>
            <exon e_start="66844" e_stop="66948"/>
            <exon e_start="67426" e_stop="67886"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.993" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.972" acc_prob="0.975" e_score="1.000"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64273" e_stop="64337" e_length="65"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.993">
            <gDNA_intron_boundary i_start="64338" i_stop="64438" i_length="101"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64439" e_stop="64524" e_length="86"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65585" e_stop="65712" e_length="128"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="0.997">
            <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="66844" e_stop="66948" e_length="105"/>
          </exon>
          <intron i_serial="4" don_prob="0.972" acc_prob="0.975">
            <gDNA_intron_boundary i_start="66949" i_stop="67425" i_length="477"/>
          </intron>
          <exon e_serial="5" e_score="0.998">
            <gDNA_exon_boundary e_start="67426" e_stop="67886" e_length="461"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64273" stop="64337"/>
              <exon start="64439" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67523"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E206982" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64443" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369409" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64461" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E377883" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64461" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67666"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276577" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64489" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E349468" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64497" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67804"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64498" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368367" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64505" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67769"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E368157" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276597" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65600" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E302710" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65634" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67778"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E711719" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65638" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E405423" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65644" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E348075" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65646" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E287372" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65693" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E220926" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65699" stop="65712"/>
              <exon start="66844" stop="66948"/>
              <exon start="67426" stop="67757"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282309" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66886" stop="66948"/>
              <exon start="67426" stop="67711"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E225918" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66901" stop="66948"/>
              <exon start="67426" stop="67886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261420" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66901" stop="66948"/>
              <exon start="67426" stop="67832"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66910" stop="66948"/>
              <exon start="67426" stop="67842"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E733056" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66912" stop="66948"/>
              <exon start="67426" stop="67783"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E357696" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66926" stop="66948"/>
              <exon start="67426" stop="67780"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E221345" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67439" stop="67830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67443" stop="67886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67490" stop="67886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237331" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG : ATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG : GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG : GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAG : GTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAAATTCTACCGTGTTTATTAATACGGATAACTATAGTTCAACCTGG</gDNA_template>
            <first_frame> L  N  P  I  S  S  T  S  F  A  *  R  V  S  S  F  S  D  F  L  I  R :   F  V  W  I  L  M  A  S  K  R  I  L  K  E  L  K  D  L  Q  K  D  P  P  T  S  C  S  A   : G  P  V  G  E  D  M  F  H  W  Q  A  T  I  M  G  P  S  D  S  P  Y  A  G  G  V  F  L  V  T  I  H  F  P  P  D  Y  P  F  K  P  P  K  :  V  A  F  R  T  K  V  F  H  P  N  I  N  S  N  G  S  I  C  L  D  I  L  K  E  Q  W  S  P  A  L  T  I  S  K  :  V  L  L  S  I  C  S  L  L  T  D  P  N  P  D  D  P  L  V  P  E  I  A  H  M  Y  K  T  D  K  S  K  Y  E  G  T  A  R  S  W  T  Q  K  Y  A  M  G  *  K  I  *  P  Y  D  G  L  N  *  Y  K  Q  K  Q  I  S  N  V  L  S  S  L  F  S  I  N  N  V  *  N  S  I  R  R  C  F  S  T  G  R  T  I  M  L  *  I  C  L  C  M  N  T  N  I  *  T  L  N  M  C  G  K  R  M  Y  L  L  F  D  C  F  C  W  F  D  D  Q  F  V  *  L  I  P  Y  F  K  S  L  L  *  I  L  P  C  L  L  I  R  I  T  I  V  Q  P   </first_frame>
            <second_frame>  S  T  Q  F  H  L  L  V  S  R  K  E  S  A  A  F  P  I  F  *  S   : D  L  F  G  F  *  W  L  R  N  E  Y  *  R  S  *  R  I  S  R  R  I  L  L  L  H  A  A  L  :  A  L  L  E  R  T  C  F  T  G  R  L  Q  *  W  G  P  L  I  A  L  M  L  G  V  F  F  W  S  R  S  I  F  L  R  I  I  H  S  S  L  L  R :   L  L  L  G  Q  K  F  S  I  Q  I  S  I  A  M  G  V  Y  A  W  T  Y  *  R  S  S  G  A  L  H  *  L  F  P  R :   F  C  F  Q  F  A  H  F  *  R  T  Q  T  L  T  T  P  W  F  L  R  L  L  T  C  T  R  L  T  S  P  N  T  K  E  P  P  G  V  G  P  R  S  M  P  W  V  K  K  F  N  P  M  M  A  *  T  D  I  N  K  N  K  F  Q  M  F  Y  L  L  Y  S  P  L  T  M  C  R  I  A  L  G  V  A  S  L  Q  E  E  R  *  C  F  E  F  V  Y  V  *  I  L  I  F  E  L  *  T  C  V  G  S  V  C  I  C  F  L  T  V  S  V  G  L  T  I  N  L  C  N  *  F  H  T  S  K  A  F  C  K  F  Y  R  V  Y  *  Y  G  *  L  *  F  N  L  </second_frame>
            <third_frame>   Q  P  N  F  I  Y  *  F  R  V  K  S  Q  Q  L  F  R  F  S  D  Q  :  I  C  L  D  F  D  G  F  E  T  N  I  E  G  A  E  G  S  P  E  G  S  S  Y  F  M  Q  R  W :   P  C  W  R  G  H  V  S  L  A  G  Y  N  N  G  A  L  *  *  P  L  C  W  G  C  F  F  G  H  D  P  F  S  S  G  L  S  I  Q  A  S  *   : G  C  F  *  D  K  S  F  P  S  K  Y  Q  *  Q  W  E  Y  M  L  G  H  T  E  G  A  V  E  P  C  I  N  Y  F  Q   : G  F  A  F  N  L  L  T  F  D  G  P  K  P  *  R  P  L  G  S  *  D  C  S  H  V  Q  D  *  Q  V  Q  I  R  R  N  R  Q  E  L  D  P  E  V  C  H  G  L  K  N  L  T  L  *  W  L  E  L  I  *  T  K  T  N  F  K  C  F  I  F  S  I  L  H  *  Q  C  V  E  *  H  *  A  L  L  L  Y  R  K  N  D  N  A  L  N  L  F  M  Y  E  Y  *  Y  L  N  F  E  H  V  W  E  A  Y  V  S  A  F  *  L  F  L  L  V  *  R  S  I  C  V  I  N  S  I  L  Q  K  P  F  V  N  S  T  V  F  I  N  T  D  N  Y  S  S  T  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64306" stop="64337"/>
                    <exon start="64439" stop="64524"/>
                    <exon start="65585" stop="65712"/>
                    <exon start="66844" stop="66948"/>
                    <exon start="67426" stop="67569"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>492</number_coding_nucleotides>
                  <number_encoded_amino_acids>164</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVSSFSDFLIRFVWILMASKRILKELKDLQKDPPTSCSAGPVGEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKSKYEGTARSWTQKYAMG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="64258" e_stop="64337"/>
            <exon e_start="64433" e_stop="64524"/>
            <exon e_start="65585" e_stop="65712"/>
            <exon e_start="66844" e_stop="67886"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.957" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="64258" e_stop="64337" e_length="80"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.997">
            <gDNA_intron_boundary i_start="64338" i_stop="64432" i_length="95"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="64433" e_stop="64524" e_length="92"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.999">
            <gDNA_intron_boundary i_start="64525" i_stop="65584" i_length="1060"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="65585" e_stop="65712" e_length="128"/>
          </exon>
          <intron i_serial="3" don_prob="0.957" acc_prob="0.997">
            <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131"/>
          </intron>
          <exon e_serial="4" e_score="0.999">
            <gDNA_exon_boundary e_start="66844" e_stop="67886" e_length="1043"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64258" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66943"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64260" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="67145"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255029" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64260" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="67104"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64260" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375692" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64260" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65709"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375688" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64264" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65681"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276559" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64270" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="67314"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E327481" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64272" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65697"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E689669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64296" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66908"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283695" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64297" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66917"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E275338" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64297" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65671"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270604" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64302" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66879"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243522" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64302" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239989" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64313" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="67395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E698752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64319" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="66911"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E293162" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="64329" stop="64337"/>
              <exon start="64433" stop="64524"/>
              <exon start="65585" stop="65712"/>
              <exon start="66844" stop="67139"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E362456" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67195" stop="67886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375691" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67217" stop="67886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375687" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67255" stop="67761"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E593223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67424" stop="67831"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E222075" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67439" stop="67830"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E270605" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67443" stop="67886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237223" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67490" stop="67886"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237331" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAGTGATATATTCCTCAACCCAATTTCATCTACTAGTTTCGCGTAAAGAGTCAGCAGCTTTTCCGATTTTCTGATCAG : ATTCAGATTTGTTTGGATTTTGATGGCTTCGAAACGAATATTGAAGGAGCTGAAGGATCTCCAGAAGGATCCTCCTACTTCATGCAGCGCTG : GCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG : GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCATTAGCTAATTGTGTATAATCTGTAGGATAGCTAATGAAAATTTATCGACTCTTTAAAAGGGAAGATCGTTTAATTGGGCATCATAGATAATAGGTGACCTAATATTATTCCTTAATAGCTTTAGGGAGCAATGATGAAAACATTTTAACCGTCTAATGTGTCCTTCATAAAGCACTTTGATTTTGGTTGCATAGGATAAGATATTGTCCCCGATTCTCTGCTAGTAGCATCATTTGTTTTTTTTCTGAAATTATGAGTTCTGTTAAATGGCTTTCCAAGACCAGTTAAAACTGGTTTGTGTTTCGCGAAGCATGTTGTGTTATTTATGTTTCTTAAGGTGGGAAAGGATTCTGGATTACATTTCAGGTTTTGCTTTCAATTTGCTCACTTTTGACGGACCCAAACCCTGACGACCCCTTGGTTCCTGAGATTGCTCACATGTACAAGACTGACAAGTCCAAATACGAAGGAACCGCCAGGAGTTGGACCCAGAAGTATGCCATGGGTTAAAAAATTTAACCCTATGATGGCTTGAACTGATATAAACAAAAACAAATTTCAAATGTTTTATCTTCTCTATTCTCCATTAACAATGTGTAGAATAGCATTAGGCGTTGCTTCTCTACAGGAAGAACGATAATGCTTTGAATTTGTTTATGTATGAATACTAATATTTGAACTTTGAACATGTGTGGGAAGCGTATGTATCTGCTTTTTGACTGTTTCTGTTGGTTTGACGATCAATTTGTGTAATTAATTCCATACTTCAAAAGCCTTTTGTAAATTCTACCGTGTTTATTAATACGGATAACTATAGTTCAACCTGG</gDNA_template>
            <first_frame> K  S  D  I  F  L  N  P  I  S  S  T  S  F  A  *  R  V  S  S  F  S  D  F  L  I  R :   F  R  F  V  W  I  L  M  A  S  K  R  I  L  K  E  L  K  D  L  Q  K  D  P  P  T  S  C  S  A   : G  P  V  G  E  D  M  F  H  W  Q  A  T  I  M  G  P  S  D  S  P  Y  A  G  G  V  F  L  V  T  I  H  F  P  P  D  Y  P  F  K  P  P  K  :  V  A  F  R  T  K  V  F  H  P  N  I  N  S  N  G  S  I  C  L  D  I  L  K  E  Q  W  S  P  A  L  T  I  S  K  V  L  S  Y  L  Y  L  L  S  N  N  T  S  Y  E  N  I  P  I  P  R  L  G  T  F  M  I  *  V  P  F  Q  I  D  F  D  S  L  A  N  C  V  *  S  V  G  *  L  M  K  I  Y  R  L  F  K  R  E  D  R  L  I  G  H  H  R  *  *  V  T  *  Y  Y  S  L  I  A  L  G  S  N  D  E  N  I  L  T  V  *  C  V  L  H  K  A  L  *  F  W  L  H  R  I  R  Y  C  P  R  F  S  A  S  S  I  I  C  F  F  S  E  I  M  S  S  V  K  W  L  S  K  T  S  *  N  W  F  V  F  R  E  A  C  C  V  I  Y  V  S  *  G  G  K  G  F  W  I  T  F  Q  V  L  L  S  I  C  S  L  L  T  D  P  N  P  D  D  P  L  V  P  E  I  A  H  M  Y  K  T  D  K  S  K  Y  E  G  T  A  R  S  W  T  Q  K  Y  A  M  G  *  K  I  *  P  Y  D  G  L  N  *  Y  K  Q  K  Q  I  S  N  V  L  S  S  L  F  S  I  N  N  V  *  N  S  I  R  R  C  F  S  T  G  R  T  I  M  L  *  I  C  L  C  M  N  T  N  I  *  T  L  N  M  C  G  K  R  M  Y  L  L  F  D  C  F  C  W  F  D  D  Q  F  V  *  L  I  P  Y  F  K  S  L  L  *  I  L  P  C  L  L  I  R  I  T  I  V  Q  P   </first_frame>
            <second_frame>  K  V  I  Y  S  S  T  Q  F  H  L  L  V  S  R  K  E  S  A  A  F  P  I  F  *  S   : D  S  D  L  F  G  F  *  W  L  R  N  E  Y  *  R  S  *  R  I  S  R  R  I  L  L  L  H  A  A  L  :  A  L  L  E  R  T  C  F  T  G  R  L  Q  *  W  G  P  L  I  A  L  M  L  G  V  F  F  W  S  R  S  I  F  L  R  I  I  H  S  S  L  L  R :   L  L  L  G  Q  K  F  S  I  Q  I  S  I  A  M  G  V  Y  A  W  T  Y  *  R  S  S  G  A  L  H  *  L  F  P  R  S  F  L  T  F  I  C  *  A  I  I  Q  A  M  K  T  Y  L  F  R  G  L  G  P  S  *  Y  K  C  L  F  K  *  I  L  I  H  *  L  I  V  Y  N  L  *  D  S  *  *  K  F  I  D  S  L  K  G  K  I  V  *  L  G  I  I  D  N  R  *  P  N  I  I  P  *  *  L  *  G  A  M  M  K  T  F  *  P  S  N  V  S  F  I  K  H  F  D  F  G  C  I  G  *  D  I  V  P  D  S  L  L  V  A  S  F  V  F  F  L  K  L  *  V  L  L  N  G  F  P  R  P  V  K  T  G  L  C  F  A  K  H  V  V  L  F  M  F  L  K  V  G  K  D  S  G  L  H  F  R  F  C  F  Q  F  A  H  F  *  R  T  Q  T  L  T  T  P  W  F  L  R  L  L  T  C  T  R  L  T  S  P  N  T  K  E  P  P  G  V  G  P  R  S  M  P  W  V  K  K  F  N  P  M  M  A  *  T  D  I  N  K  N  K  F  Q  M  F  Y  L  L  Y  S  P  L  T  M  C  R  I  A  L  G  V  A  S  L  Q  E  E  R  *  C  F  E  F  V  Y  V  *  I  L  I  F  E  L  *  T  C  V  G  S  V  C  I  C  F  L  T  V  S  V  G  L  T  I  N  L  C  N  *  F  H  T  S  K  A  F  C  K  F  Y  R  V  Y  *  Y  G  *  L  *  F  N  L  </second_frame>
            <third_frame>   K  *  Y  I  P  Q  P  N  F  I  Y  *  F  R  V  K  S  Q  Q  L  F  R  F  S  D  Q  :  I  Q  I  C  L  D  F  D  G  F  E  T  N  I  E  G  A  E  G  S  P  E  G  S  S  Y  F  M  Q  R  W :   P  C  W  R  G  H  V  S  L  A  G  Y  N  N  G  A  L  *  *  P  L  C  W  G  C  F  F  G  H  D  P  F  S  S  G  L  S  I  Q  A  S  *   : G  C  F  *  D  K  S  F  P  S  K  Y  Q  *  Q  W  E  Y  M  L  G  H  T  E  G  A  V  E  P  C  I  N  Y  F  Q  G  P  F  L  P  L  S  A  E  Q  *  Y  K  L  *  K  H  T  Y  S  E  A  W  D  L  H  D  I  S  A  F  S  N  R  F  *  F  I  S  *  L  C  I  I  C  R  I  A  N  E  N  L  S  T  L  *  K  G  R  S  F  N  W  A  S  *  I  I  G  D  L  I  L  F  L  N  S  F  R  E  Q  *  *  K  H  F  N  R  L  M  C  P  S  *  S  T  L  I  L  V  A  *  D  K  I  L  S  P  I  L  C  *  *  H  H  L  F  F  F  *  N  Y  E  F  C  *  M  A  F  Q  D  Q  L  K  L  V  C  V  S  R  S  M  L  C  Y  L  C  F  L  R  W  E  R  I  L  D  Y  I  S  G  F  A  F  N  L  L  T  F  D  G  P  K  P  *  R  P  L  G  S  *  D  C  S  H  V  Q  D  *  Q  V  Q  I  R  R  N  R  Q  E  L  D  P  E  V  C  H  G  L  K  N  L  T  L  *  W  L  E  L  I  *  T  K  T  N  F  K  C  F  I  F  S  I  L  H  *  Q  C  V  E  *  H  *  A  L  L  L  Y  R  K  N  D  N  A  L  N  L  F  M  Y  E  Y  *  Y  L  N  F  E  H  V  W  E  A  Y  V  S  A  F  *  L  F  L  L  V  *  R  S  I  C  V  I  N  S  I  L  Q  K  P  F  V  N  S  T  V  F  I  N  T  D  N  Y  S  S  T  W </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="64306" stop="64337"/>
                    <exon start="64433" stop="64524"/>
                    <exon start="65585" stop="65712"/>
                    <exon start="66844" stop="67032"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>438</number_coding_nucleotides>
                  <number_encoded_amino_acids>146</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RVSSFSDFLIRFRFVWILMASKRILKELKDLQKDPPTSCSAGPVGEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLSYLYLLSNNTSYENIPIPRLGTFMI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="65387" e_stop="65712"/>
            <exon e_start="66844" e_stop="67059"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.957" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="65387" e_stop="65712" e_length="326"/>
          </exon>
          <intron i_serial="1" don_prob="0.957" acc_prob="0.997">
            <gDNA_intron_boundary i_start="65713" i_stop="66843" i_length="1131"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="66844" e_stop="67059" e_length="216"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="65387" stop="65712"/>
              <exon start="66844" stop="67059"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E256550" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATAATATGATTCATGCTTGACTGTCTTCATACATGATATACATCTGGATTTGACAATTCTTATTTGAATTATTGTGAGAGGGCATTTTCACTATTCTTCATCTAGATGTCGCGCACATGTTCCTGCATCTGTAAAAGATGTACATGCTATGTTATCTGTTATTCTTTGACATTGACTTCCTAACAACTTTGTAACAGGCCCTGTTGGAGAGGACATGTTTCACTGGCAGGCTACAATAATGGGGCCCTCTGATAGCCCTTATGCTGGGGGTGTTTTTTTGGTCACGATCCATTTTCCTCCGGATTATCCATTCAAGCCTCCTAAG : GTTGCTTTTAGGACAAAAGTTTTCCATCCAAATATCAATAGCAATGGGAGTATATGCTTGGACATACTGAAGGAGCAGTGGAGCCCTGCATTAACTATTTCCAAGGTCCTTTCTTACCTTTATCTGCTGAGCAATAATACAAGCTATGAAAACATACCTATTCCGAGGCTTGGGACCTTCATGATATAAGTGCCTTTTCAAATAGATTTTGATTCA</gDNA_template>
            <first_frame> Y  N  M  I  H  A  *  L  S  S  Y  M  I  Y  I  W  I  *  Q  F  L  F  E  L  L  *  E  G  I  F  T  I  L  H  L  D  V  A  H  M  F  L  H  L  *  K  M  Y  M  L  C  Y  L  L  F  F  D  I  D  F  L  T  T  L  *  Q  A  L  L  E  R  T  C  F  T  G  R  L  Q  *  W  G  P  L  I  A  L  M  L  G  V  F  F  W  S  R  S  I  F  L  R  I  I  H  S  S  L  L  R :   L  L  L  G  Q  K  F  S  I  Q  I  S  I  A  M  G  V  Y  A  W  T  Y  *  R  S  S  G  A  L  H  *  L  F  P  R  S  F  L  T  F  I  C  *  A  I  I  Q  A  M  K  T  Y  L  F  R  G  L  G  P  S  *  Y  K  C  L  F  K  *  I  L  I   </first_frame>
            <second_frame>  I  I  *  F  M  L  D  C  L  H  T  *  Y  T  S  G  F  D  N  S  Y  L  N  Y  C  E  R  A  F  S  L  F  F  I  *  M  S  R  T  C  S  C  I  C  K  R  C  T  C  Y  V  I  C  Y  S  L  T  L  T  S  *  Q  L  C  N  R  P  C  W  R  G  H  V  S  L  A  G  Y  N  N  G  A  L  *  *  P  L  C  W  G  C  F  F  G  H  D  P  F  S  S  G  L  S  I  Q  A  S  *   : G  C  F  *  D  K  S  F  P  S  K  Y  Q  *  Q  W  E  Y  M  L  G  H  T  E  G  A  V  E  P  C  I  N  Y  F  Q  G  P  F  L  P  L  S  A  E  Q  *  Y  K  L  *  K  H  T  Y  S  E  A  W  D  L  H  D  I  S  A  F  S  N  R  F  *  F  </second_frame>
            <third_frame>   *  Y  D  S  C  L  T  V  F  I  H  D  I  H  L  D  L  T  I  L  I  *  I  I  V  R  G  H  F  H  Y  S  S  S  R  C  R  A  H  V  P  A  S  V  K  D  V  H  A  M  L  S  V  I  L  *  H  *  L  P  N  N  F  V  T  G  P  V  G  E  D  M  F  H  W  Q  A  T  I  M  G  P  S  D  S  P  Y  A  G  G  V  F  L  V  T  I  H  F  P  P  D  Y  P  F  K  P  P  K  :  V  A  F  R  T  K  V  F  H  P  N  I  N  S  N  G  S  I  C  L  D  I  L  K  E  Q  W  S  P  A  L  T  I  S  K  V  L  S  Y  L  Y  L  L  S  N  N  T  S  Y  E  N  I  P  I  P  R  L  G  T  F  M  I  *  V  P  F  Q  I  D  F  D  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="9" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="65563" stop="65712"/>
                    <exon start="66844" stop="67032"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>336</number_coding_nucleotides>
                  <number_encoded_amino_acids>112</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LPNNFVTGPVGEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLSYLYLLSNNTSYENIPIPRLGTFMI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="67767" PGL_stop="67543"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67767" e_stop="67543"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="67767" e_stop="67543" e_length="225"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67767" stop="67543"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E573811" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATACATACGCTTCCCACACATGTTCAAAGTTCAAATATTAGTATTCATACATAAACAAATTCAAAGCATTATCGTTCTTCCTGTAGAGAAGCAACGCCTAATGCTATTCTACACATTGTTAATGGAGAATAGAGAAGATAAAACATTTGAAATTTGTTTTTGTTTATATCAGTTCAAGCCATCATAGGGTTAAATTTTTTAACCCATGGCATACTTCTGGGTCCA</gDNA_template>
            <first_frame> I  H  T  L  P  T  H  V  Q  S  S  N  I  S  I  H  T  *  T  N  S  K  H  Y  R  S  S  C  R  E  A  T  P  N  A  I  L  H  I  V  N  G  E  *  R  R  *  N  I  *  N  L  F  L  F  I  S  V  Q  A  I  I  G  L  N  F  L  T  H  G  I  L  L  G  P </first_frame>
            <second_frame>  Y  I  R  F  P  H  M  F  K  V  Q  I  L  V  F  I  H  K  Q  I  Q  S  I  I  V  L  P  V  E  K  Q  R  L  M  L  F  Y  T  L  L  M  E  N  R  E  D  K  T  F  E  I  C  F  C  L  Y  Q  F  K  P  S  *  G  *  I  F  *  P  M  A  Y  F  W  V   </second_frame>
            <third_frame>   T  Y  A  S  H  T  C  S  K  F  K  Y  *  Y  S  Y  I  N  K  F  K  A  L  S  F  F  L  *  R  S  N  A  *  C  Y  S  T  H  C  *  W  R  I  E  K  I  K  H  L  K  F  V  F  V  Y  I  S  S  S  H  H  R  V  K  F  F  N  P  W  H  T  S  G  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0034P15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="+" PGL_start="88669" PGL_stop="89395"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="88669" e_stop="89395"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.957"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.957">
            <gDNA_exon_boundary e_start="88669" e_stop="89395" e_length="727"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88669" stop="89154"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367110" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89095" stop="89395"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E245978" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCACCCACAATATACCCGCAACCACCACCCACACTCACAGCCAACCCGAACCACCCCATACCCACAACATCTCCAGCCCGATCCGTTTTGGGTCCTTCCCGGCTGCCCCCGAATTACCATCGCCCGTGCCACCCCCCAATACTCATCCCATCTTAACCCGTGGCAAAGCCGATATCTTTAAACCCAAAACCTTTCAGGCTACCATACTACCAAATACACCCCTTCCCGATAGTGAACCAACAACCTACTCTATTGCCTCAAAAAATGCTTATTGACGTCATTTTATGGATGACGAGTTTAAGGCTTTGACTGATCAGAAAACTTGGGTTCTTGTACCTAAGCCCCATGGGCGGCACCCAGTGGGCTGTAAATGGGTGTACAAAATTAAACACAATGCAGATGGCAGTATTTCCAGGTACAAGGCTCGTTTGGTTGCTAAAGGCTACAATCAGGAGTATGGGCTTGATTACTCCGAGACATTCAGTCCTGTTATTCGGCAGGAAACCGTTCACCTGGTACTGTCACTCGTCGTGCGCAACAATTGACTCATCAATCAGTTGGATGTTTCCAATGCTTTTCTTCATGGCATGCTTGATGAAACTATCTACATGACGCAACCACCGGGCTATGTTGATCCCCGCTTCCCTCAACATGTTTACAAACTCCAGAAGTCTCTGTATGGGCTCAAGTAAGCCCTCTGTGCTTGGTACACACGACTGAAAATGTT</gDNA_template>
            <first_frame> S  P  T  I  Y  P  Q  P  P  P  T  L  T  A  N  P  N  H  P  I  P  T  T  S  P  A  R  S  V  L  G  P  S  R  L  P  P  N  Y  H  R  P  C  H  P  P  I  L  I  P  S  *  P  V  A  K  P  I  S  L  N  P  K  P  F  R  L  P  Y  Y  Q  I  H  P  F  P  I  V  N  Q  Q  P  T  L  L  P  Q  K  M  L  I  D  V  I  L  W  M  T  S  L  R  L  *  L  I  R  K  L  G  F  L  Y  L  S  P  M  G  G  T  Q  W  A  V  N  G  C  T  K  L  N  T  M  Q  M  A  V  F  P  G  T  R  L  V  W  L  L  K  A  T  I  R  S  M  G  L  I  T  P  R  H  S  V  L  L  F  G  R  K  P  F  T  W  Y  C  H  S  S  C  A  T  I  D  S  S  I  S  W  M  F  P  M  L  F  F  M  A  C  L  M  K  L  S  T  *  R  N  H  R  A  M  L  I  P  A  S  L  N  M  F  T  N  S  R  S  L  C  M  G  S  S  K  P  S  V  L  G  T  H  D  *  K  C  </first_frame>
            <second_frame>  H  P  Q  Y  T  R  N  H  H  P  H  S  Q  P  T  R  T  T  P  Y  P  Q  H  L  Q  P  D  P  F  W  V  L  P  G  C  P  R  I  T  I  A  R  A  T  P  Q  Y  S  S  H  L  N  P  W  Q  S  R  Y  L  *  T  Q  N  L  S  G  Y  H  T  T  K  Y  T  P  S  R  *  *  T  N  N  L  L  Y  C  L  K  K  C  L  L  T  S  F  Y  G  *  R  V  *  G  F  D  *  S  E  N  L  G  S  C  T  *  A  P  W  A  A  P  S  G  L  *  M  G  V  Q  N  *  T  Q  C  R  W  Q  Y  F  Q  V  Q  G  S  F  G  C  *  R  L  Q  S  G  V  W  A  *  L  L  R  D  I  Q  S  C  Y  S  A  G  N  R  S  P  G  T  V  T  R  R  A  Q  Q  L  T  H  Q  S  V  G  C  F  Q  C  F  S  S  W  H  A  *  *  N  Y  L  H  D  A  T  T  G  L  C  *  S  P  L  P  S  T  C  L  Q  T  P  E  V  S  V  W  A  Q  V  S  P  L  C  L  V  H  T  T  E  N  V </second_frame>
            <third_frame>   T  H  N  I  P  A  T  T  T  H  T  H  S  Q  P  E  P  P  H  T  H  N  I  S  S  P  I  R  F  G  S  F  P  A  A  P  E  L  P  S  P  V  P  P  P  N  T  H  P  I  L  T  R  G  K  A  D  I  F  K  P  K  T  F  Q  A  T  I  L  P  N  T  P  L  P  D  S  E  P  T  T  Y  S  I  A  S  K  N  A  Y  *  R  H  F  M  D  D  E  F  K  A  L  T  D  Q  K  T  W  V  L  V  P  K  P  H  G  R  H  P  V  G  C  K  W  V  Y  K  I  K  H  N  A  D  G  S  I  S  R  Y  K  A  R  L  V  A  K  G  Y  N  Q  E  Y  G  L  D  Y  S  E  T  F  S  P  V  I  R  Q  E  T  V  H  L  V  L  S  L  V  V  R  N  N  *  L  I  N  Q  L  D  V  S  N  A  F  L  H  G  M  L  D  E  T  I  Y  M  T  Q  P  P  G  Y  V  D  P  R  F  P  Q  H  V  Y  K  L  Q  K  S  L  Y  G  L  K  *  A  L  C  A  W  Y  T  R  L  K  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88978" stop="89280"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>300</number_coding_nucleotides>
                  <number_encoded_amino_acids>100</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LIRKLGFLYLSPMGGTQWAVNGCTKLNTMQMAVFPGTRLVWLLKATIRSMGLITPRHSVLLFGRKPFTWYCHSSCATIDSSISWMFPMLFFMACLMKLST*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88671" stop="88943"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>THNIPATTTHTHSQPEPPHTHNISSPIRFGSFPAAPELPSPVPPPNTHPILTRGKADIFKPKTFQATILPNTPLPDSEPTTYSIASKNAY*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="88944" stop="89213"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RHFMDDEFKALTDQKTWVLVPKPHGRHPVGCKWVYKIKHNADGSISRYKARLVAKGYNQEYGLDYSETFSPVIRQETVHLVLSLVVRNN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="-" PGL_start="97742" PGL_stop="97351"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="97742" e_stop="97351"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.934"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.934">
            <gDNA_exon_boundary e_start="97742" e_stop="97351" e_length="392"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97742" stop="97516"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97732" stop="97353"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="97678" stop="97351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258205" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTCAAACACTGAAAATTTTTCTTTCTCTGCATTTATTTTTTCTCTCAAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTCAGTTCGTTGAAGTTAAAGAAGTTTGAGTACCGCTATTTCTTTAACAGGTTAATCCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAATTTCTGTGGACTCGGATTAATTCTTGTATTTTAAATTTTTTCTGCTTCATCTTGTTTCTGTTTCTGTTCATTAACTTCATAAATACAAGTTATTGTAAGAATAACACTAT</gDNA_template>
            <first_frame> R  H  V  P  C  *  K  W  L  *  K  E  V  N  F  *  F  F  K  H  *  K  F  F  F  L  C  I  Y  F  F  S  Q  N  K  I  K  V  S  I  D  *  V  C  V  T  C  C  C  S  S  V  R  *  S  *  R  S  L  S  T  A  I  S  L  T  G  *  S  V  L  S  W  E  K  L  I  H  N  L  G  Y  S  E  G  I  K  F  L  K  D  T  Q  *  F  L  W  T  R  I  N  S  C  I  L  N  F  F  C  F  I  L  F  L  F  L  F  I  N  F  I  N  T  S  Y  C  K  N  N  T   </first_frame>
            <second_frame>  D  M  F  L  A  E  N  G  Y  K  R  K  S  I  F  D  F  S  N  T  E  N  F  S  F  S  A  F  I  F  S  L  K  I  K  S  K  C  R  S  T  E  S  V  *  L  V  A  V  L  Q  F  V  E  V  K  E  V  *  V  P  L  F  L  *  Q  V  N  P  F  Y  L  G  R  N  *  S  I  T  L  G  T  V  R  G  L  N  F  L  R  T  H  S  N  F  C  G  L  G  L  I  L  V  F  *  I  F  S  A  S  S  C  F  C  F  C  S  L  T  S  *  I  Q  V  I  V  R  I  T  L  </second_frame>
            <third_frame>   T  C  S  L  L  K  M  A  I  K  G  S  Q  F  L  I  F  Q  T  L  K  I  F  L  S  L  H  L  F  F  L  S  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  F  S  S  L  K  L  K  K  F  E  Y  R  Y  F  F  N  R  L  I  R  F  I  L  G  E  I  N  P  *  P  W  V  Q  *  G  D  *  I  S  *  G  H  T  V  I  S  V  D  S  D  *  F  L  Y  F  K  F  F  L  L  H  L  V  S  V  S  V  H  *  L  H  K  Y  K  L  L  *  E  *  H  Y </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0034P15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="+" PGL_start="100677" PGL_stop="101996"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="100677" e_stop="100701"/>
            <exon e_start="101437" e_stop="101996"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.463" acc_prob="0.000" e_score="0.480"/>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.480">
            <gDNA_exon_boundary e_start="100677" e_stop="100701" e_length="25"/>
          </exon>
          <intron i_serial="1" don_prob="0.463" acc_prob="0.000">
            <gDNA_intron_boundary i_start="100702" i_stop="101436" i_length="735"/>
          </intron>
          <exon e_serial="2" e_score="0.961">
            <gDNA_exon_boundary e_start="101437" e_stop="101996" e_length="560"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="100677" stop="100701"/>
              <exon start="101437" stop="101996"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395006" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTAGGTCCTATTTTTACCCTCTTAG : TAAGAAGATGCAAAATCTTTATTCATATTAACTGCAATTACATTGAGTTTGAAAAGGTCATCACTAAGGTAACCTTTTCCTACATACATATCATTCTTGCTTACTACTACTTTATCAGAAACAAATACACATATGAATCCATTCTTGGTCAGAATTGGAATTGAAACTAAATTCTTTCTCAATTCTGGAACATATGAGACCCTATTCAAAGTCACCACCTTCCCTGCTGTCATCTTTAATAGGACTTTGCCAGTTCCTTCCACCTTTGCAACAGCGGAGTTTGCCATAAACAATTTTTCATCTGTAAGTGCTGGAGTATATGATGAAAATAATTCTTTGTTGGCACAAACATGGCATGAGGCACCAGAATCTATCCACCATTCTCTTGGATTTCCAACCAAGTTACATTCTGAAAGCATTGCACAGAGATCATCCATTTCTCCTTTGGATTCAGCCGAGTTTGCTTGATCTTTCTTTTTCTTGTCCTTCTTAGGACCCCGACATTCATTATCCCTATGACCATGTTTACCACAATTAAAGCAGTTTCCATTGAATTTCTT</gDNA_template>
            <first_frame> L  G  P  I  F  T  L  L   : V  R  R  C  K  I  F  I  H  I  N  C  N  Y  I  E  F  E  K  V  I  T  K  V  T  F  S  Y  I  H  I  I  L  A  Y  Y  Y  F  I  R  N  K  Y  T  Y  E  S  I  L  G  Q  N  W  N  *  N  *  I  L  S  Q  F  W  N  I  *  D  P  I  Q  S  H  H  L  P  C  C  H  L  *  *  D  F  A  S  S  F  H  L  C  N  S  G  V  C  H  K  Q  F  F  I  C  K  C  W  S  I  *  *  K  *  F  F  V  G  T  N  M  A  *  G  T  R  I  Y  P  P  F  S  W  I  S  N  Q  V  T  F  *  K  H  C  T  E  I  I  H  F  S  F  G  F  S  R  V  C  L  I  F  L  F  L  V  L  L  R  T  P  T  F  I  I  P  M  T  M  F  T  T  I  K  A  V  S  I  E  F  L </first_frame>
            <second_frame>  *  V  L  F  L  P  S  *  :  *  E  D  A  K  S  L  F  I  L  T  A  I  T  L  S  L  K  R  S  S  L  R  *  P  F  P  T  Y  I  S  F  L  L  T  T  T  L  S  E  T  N  T  H  M  N  P  F  L  V  R  I  G  I  E  T  K  F  F  L  N  S  G  T  Y  E  T  L  F  K  V  T  T  F  P  A  V  I  F  N  R  T  L  P  V  P  S  T  F  A  T  A  E  F  A  I  N  N  F  S  S  V  S  A  G  V  Y  D  E  N  N  S  L  L  A  Q  T  W  H  E  A  P  E  S  I  H  H  S  L  G  F  P  T  K  L  H  S  E  S  I  A  Q  R  S  S  I  S  P  L  D  S  A  E  F  A  *  S  F  F  F  L  S  F  L  G  P  R  H  S  L  S  L  *  P  C  L  P  Q  L  K  Q  F  P  L  N  F   </second_frame>
            <third_frame>   R  S  Y  F  Y  P  L  S :   K  K  M  Q  N  L  Y  S  Y  *  L  Q  L  H  *  V  *  K  G  H  H  *  G  N  L  F  L  H  T  Y  H  S  C  L  L  L  L  Y  Q  K  Q  I  H  I  *  I  H  S  W  S  E  L  E  L  K  L  N  S  F  S  I  L  E  H  M  R  P  Y  S  K  S  P  P  S  L  L  S  S  L  I  G  L  C  Q  F  L  P  P  L  Q  Q  R  S  L  P  *  T  I  F  H  L  *  V  L  E  Y  M  M  K  I  I  L  C  W  H  K  H  G  M  R  H  Q  N  L  S  T  I  L  L  D  F  Q  P  S  Y  I  L  K  A  L  H  R  D  H  P  F  L  L  W  I  Q  P  S  L  L  D  L  S  F  S  C  P  S  *  D  P  D  I  H  Y  P  Y  D  H  V  Y  H  N  *  S  S  F  H  *  I  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="101509" stop="101904"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PFPTYISFLLTTTLSETNTHMNPFLVRIGIETKFFLNSGTYETLFKVTTFPAVIFNRTLPVPSTFATAEFAINNFSSVSAGVYDENNSLLAQTWHEAPESIHHSLGFPTKLHSESIAQRSSISPLDSAEFA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="-" PGL_start="102145" PGL_stop="101417"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102145" e_stop="101417"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.961"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.961">
            <gDNA_exon_boundary e_start="102145" e_stop="101417" e_length="729"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102145" stop="101437"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369759" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101972" stop="101446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E250407" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="101940" stop="101417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E375520" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TAAGGTTGAGAATCGAAGAGGATAATAAGGCTGCAGAAAAGAGGTCACGTGGTAATTCAGCAATATCTAGATTAAATTTTATTGAAGAAGATTCCACAAAATTAAAGAAAAGAAAGAAAACATCTGGTCCAAAAAGCAATCAACCTAAGAAGAAATTCAATGGAAACTGCTTTAATTGTGGTAAACATGGTCATAGGGATAATGAATGTCGGGGTCCTAAGAAGGACAAGAAAAAGAAAGATCAAGCAAACTCGGCTGAATCCAAAGGAGAAATGGATGATCTCTGTGCAATGCTTTCAGAATGTAACTTGGTTGGAAATCCAAGAGAATGGTGGATAGATTCTGGTGCCTCATGCCATGTTTGTGCCAACAAAGAATTATTTTCATCATATACTCCAGCACTTACAGATGAAAAATTGTTTATGGCAAACTCCGCTGTTGCAAAGGTGGAAGGAACTGGCAAAGTCCTATTAAAGATGACAGCAGGGAAGGTGGTGACTTTGAATAGGGTCTCATATGTTCCAGAATTGAGAAAGAATTTAGTTTCAATTCCAATTCTGACCAAGAATGGATTCATATGTGTATTTGTTTCTGATAAAGTAGTAGTAAGCAAGAATGATATGTATGTAGGAAAAGGTTACCTTAGTGATGACCTTTTCAAACTCAATGTAATTGCAGTTAATATGAATAAAGATTTTGCATCTTCTTACTTGCTTGAGTCTAAATGTT</gDNA_template>
            <first_frame> *  G  *  E  S  K  R  I  I  R  L  Q  K  R  G  H  V  V  I  Q  Q  Y  L  D  *  I  L  L  K  K  I  P  Q  N  *  R  K  E  R  K  H  L  V  Q  K  A  I  N  L  R  R  N  S  M  E  T  A  L  I  V  V  N  M  V  I  G  I  M  N  V  G  V  L  R  R  T  R  K  R  K  I  K  Q  T  R  L  N  P  K  E  K  W  M  I  S  V  Q  C  F  Q  N  V  T  W  L  E  I  Q  E  N  G  G  *  I  L  V  P  H  A  M  F  V  P  T  K  N  Y  F  H  H  I  L  Q  H  L  Q  M  K  N  C  L  W  Q  T  P  L  L  Q  R  W  K  E  L  A  K  S  Y  *  R  *  Q  Q  G  R  W  *  L  *  I  G  S  H  M  F  Q  N  *  E  R  I  *  F  Q  F  Q  F  *  P  R  M  D  S  Y  V  Y  L  F  L  I  K  *  *  *  A  R  M  I  C  M  *  E  K  V  T  L  V  M  T  F  S  N  S  M  *  L  Q  L  I  *  I  K  I  L  H  L  L  T  C  L  S  L  N  V </first_frame>
            <second_frame>  K  V  E  N  R  R  G  *  *  G  C  R  K  E  V  T  W  *  F  S  N  I  *  I  K  F  Y  *  R  R  F  H  K  I  K  E  K  K  E  N  I  W  S  K  K  Q  S  T  *  E  E  I  Q  W  K  L  L  *  L  W  *  T  W  S  *  G  *  *  M  S  G  S  *  E  G  Q  E  K  E  R  S  S  K  L  G  *  I  Q  R  R  N  G  *  S  L  C  N  A  F  R  M  *  L  G  W  K  S  K  R  M  V  D  R  F  W  C  L  M  P  C  L  C  Q  Q  R  I  I  F  I  I  Y  S  S  T  Y  R  *  K  I  V  Y  G  K  L  R  C  C  K  G  G  R  N  W  Q  S  P  I  K  D  D  S  R  E  G  G  D  F  E  *  G  L  I  C  S  R  I  E  K  E  F  S  F  N  S  N  S  D  Q  E  W  I  H  M  C  I  C  F  *  *  S  S  S  K  Q  E  *  Y  V  C  R  K  R  L  P  *  *  *  P  F  Q  T  Q  C  N  C  S  *  Y  E  *  R  F  C  I  F  L  L  A  *  V  *  M   </second_frame>
            <third_frame>   R  L  R  I  E  E  D  N  K  A  A  E  K  R  S  R  G  N  S  A  I  S  R  L  N  F  I  E  E  D  S  T  K  L  K  K  R  K  K  T  S  G  P  K  S  N  Q  P  K  K  K  F  N  G  N  C  F  N  C  G  K  H  G  H  R  D  N  E  C  R  G  P  K  K  D  K  K  K  K  D  Q  A  N  S  A  E  S  K  G  E  M  D  D  L  C  A  M  L  S  E  C  N  L  V  G  N  P  R  E  W  W  I  D  S  G  A  S  C  H  V  C  A  N  K  E  L  F  S  S  Y  T  P  A  L  T  D  E  K  L  F  M  A  N  S  A  V  A  K  V  E  G  T  G  K  V  L  L  K  M  T  A  G  K  V  V  T  L  N  R  V  S  Y  V  P  E  L  R  K  N  L  V  S  I  P  I  L  T  K  N  G  F  I  C  V  F  V  S  D  K  V  V  V  S  K  N  D  M  Y  V  G  K  G  Y  L  S  D  D  L  F  K  L  N  V  I  A  V  N  M  N  K  D  F  A  S  S  Y  L  L  E  S  K  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="-"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102143" stop="101418"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>726</number_coding_nucleotides>
                  <number_encoded_amino_acids>242</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RLRIEEDNKAAEKRSRGNSAISRLNFIEEDSTKLKKRKKTSGPKSNQPKKKFNGNCFNCGKHGHRDNECRGPKKDKKKKDQANSAESKGEMDDLCAMLSECNLVGNPREWWIDSGASCHVCANKELFSSYTPALTDEKLFMANSAVAKVEGTGKVLLKMTAGKVVTLNRVSYVPELRKNLVSIPILTKNGFICVFVSDKVVVSKNDMYVGKGYLSDDLFKLNVIAVNMNKDFASSYLLESKC</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="15" PGL_strand="+" PGL_start="102033" PGL_stop="102649"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="102033" e_stop="102649"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="102033" e_stop="102649" e_length="617"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102033" stop="102649"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E419244" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="15" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTTTCTTTAATTTTGTGGAATCTTCTTCAATAAAATTTAATCTAGATATTGCTGAATTACCACGTGACCTCTTTTCTGCAGCCTTATTATCCTCTTCGATTCTCAACCTTACTATGAGATCTTCAACAGTCATTTCCTTACGTTTGTGTTTCAAGTAGTTTTTAAAGTCCTTCCACAATGGAGGTAACTTTTCAATAATTGCAGCCACTTGAAAAGCATCATCCACGATCAATCCTTCAGCAAGGAGATCATGGATTATGACCTGCAATTCTTGAACTTGGGTGACGACAGTCTTACTGTCTATCATCTTATAGTCTAGAAATTTTGCCACAATGAATTTATTCATTCCGGCATCTTCTGTTTTGTACTTCTTTTCTAAAGCATCCCAGAGTTCTTTTGAGGTTTTGGCATTGCTGTACACATTGTACAGATCATCTTGAAGACCACTCAAAATATAATTTTTACACAAAAAATCTGAGTGTGTCCATGCTTCTGTTACCAAGAATCGTTCATCAGCCGGAGTTTTATCTGACATAACAGGAACATTCTCATTGATGAACTTCTGCAGACCCAACGTAGTGATATAGAAGAACAACTTTTGCTGCCATCTCTTAA</gDNA_template>
            <first_frame> S  F  L  *  F  C  G  I  F  F  N  K  I  *  S  R  Y  C  *  I  T  T  *  P  L  F  C  S  L  I  I  L  F  D  S  Q  P  Y  Y  E  I  F  N  S  H  F  L  T  F  V  F  Q  V  V  F  K  V  L  P  Q  W  R  *  L  F  N  N  C  S  H  L  K  S  I  I  H  D  Q  S  F  S  K  E  I  M  D  Y  D  L  Q  F  L  N  L  G  D  D  S  L  T  V  Y  H  L  I  V  *  K  F  C  H  N  E  F  I  H  S  G  I  F  C  F  V  L  L  F  *  S  I  P  E  F  F  *  G  F  G  I  A  V  H  I  V  Q  I  I  L  K  T  T  Q  N  I  I  F  T  Q  K  I  *  V  C  P  C  F  C  Y  Q  E  S  F  I  S  R  S  F  I  *  H  N  R  N  I  L  I  D  E  L  L  Q  T  Q  R  S  D  I  E  E  Q  L  L  L  P  S  L   </first_frame>
            <second_frame>  L  F  F  N  F  V  E  S  S  S  I  K  F  N  L  D  I  A  E  L  P  R  D  L  F  S  A  A  L  L  S  S  S  I  L  N  L  T  M  R  S  S  T  V  I  S  L  R  L  C  F  K  *  F  L  K  S  F  H  N  G  G  N  F  S  I  I  A  A  T  *  K  A  S  S  T  I  N  P  S  A  R  R  S  W  I  M  T  C  N  S  *  T  W  V  T  T  V  L  L  S  I  I  L  *  S  R  N  F  A  T  M  N  L  F  I  P  A  S  S  V  L  Y  F  F  S  K  A  S  Q  S  S  F  E  V  L  A  L  L  Y  T  L  Y  R  S  S  *  R  P  L  K  I  *  F  L  H  K  K  S  E  C  V  H  A  S  V  T  K  N  R  S  S  A  G  V  L  S  D  I  T  G  T  F  S  L  M  N  F  C  R  P  N  V  V  I  *  K  N  N  F  C  C  H  L  L  </second_frame>
            <third_frame>   F  S  L  I  L  W  N  L  L  Q  *  N  L  I  *  I  L  L  N  Y  H  V  T  S  F  L  Q  P  Y  Y  P  L  R  F  S  T  L  L  *  D  L  Q  Q  S  F  P  Y  V  C  V  S  S  S  F  *  S  P  S  T  M  E  V  T  F  Q  *  L  Q  P  L  E  K  H  H  P  R  S  I  L  Q  Q  G  D  H  G  L  *  P  A  I  L  E  L  G  *  R  Q  S  Y  C  L  S  S  Y  S  L  E  I  L  P  Q  *  I  Y  S  F  R  H  L  L  F  C  T  S  F  L  K  H  P  R  V  L  L  R  F  W  H  C  C  T  H  C  T  D  H  L  E  D  H  S  K  Y  N  F  Y  T  K  N  L  S  V  S  M  L  L  L  P  R  I  V  H  Q  P  E  F  Y  L  T  *  Q  E  H  S  H  *  *  T  S  A  D  P  T  *  *  Y  R  R  T  T  F  A  A  I  S  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="15" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102371" stop="102571"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IYSFRHLLFCTSFLKHPRVLLRFWHCCTHCTDHLEDHSKYNFYTKNLSVSMLLLPRIVHQPEFYLT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="16" PGL_strand="-" PGL_start="103178" PGL_stop="102157"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103178" e_stop="102157"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.960"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="103178" e_stop="102157" e_length="1022"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103178" stop="102502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261066" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103178" stop="102541"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263584" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103178" stop="102572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276669" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103089" stop="102480"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E253427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102978" stop="102247"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262550" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102978" stop="102534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258047" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102943" stop="102172"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261540" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="102764" stop="102157"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E251204" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="16" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTTAATTCGTTTTATCTTGGGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTTTAAATTTTTTCCGCTTCATCTTGTTTCTGCTTCTGTTCATTAACTTCATAAATACAAGTTATTGTAAAAATAACAATCTTAAGAAATTTTAGCAGTTTTTGTATTTGAGGTTTCTGGAGATTAAAACCTTCATGGTTTTCTACTCTGCTTGAATTTTTAAAATTCATTCGATTAACGATTAAAAGAACATAAAAACTTTATCGTTAAATCAGAAACAGTTTGTGTAAAGATTTATTTTTTACTGTTAGTATTTTTAAATACTTAATTTATCTGCCATTTGTGACAGAAAAAATGACTAATTCAAGTCAAACAAATGCTGGAACAGTAAGTGCTGCAACAACAACGGTTACACATAATCGTTCAAATGCTGCCTTAGCACCGGCTGAGAAACCTGCAAAGTTTTCTGGAGTCGACTTTAAGAGATGGCAGCAAAAGTTGTTCTTCTATATCACTACGTTGGGTCTGCAGAAGTTCATCAATGAGAATGTTCCTGTTATGTCAGATAAAACTCCGGCTGATGAACGATTCTTGGTAACAGAAGCATGGACACACTCAGATTTTTTGTGTAAAAATTATATTTTGAGTGGTCTTCAAGATGATCTGTACAATGTGTACAGCAATGCCAAAACCTCAAAAGAACTCTGGGATGCTTTAGAAAAGAAGTACAAAACAGAAGATGCCGGAATGAATAAATTCATTGTGGCAAAATTTCTAGACTATAAGATGATAGACAGTAAGACTGTCGTCACCCAAGTTCAAGAATTGCAGGTCATAATCCATGATCTCCTTGCTGAAGGATTGATCGTGGATGATGCTTTTCAAGTGGCTGCAATTATTGAAAAGTTACCTCCATTGTGGAAGGACTTTAAAAACTACTTGAAACACAAACGTAAGGAAATGACTGTTGA</gDNA_template>
            <first_frame> V  N  S  F  Y  L  G  R  N  *  S  I  T  L  G  T  V  R  G  L  N  F  L  R  T  H  S  S  F  C  G  L  G  L  I  L  V  F  *  I  F  S  A  S  S  C  F  C  F  C  S  L  T  S  *  I  Q  V  I  V  K  I  T  I  L  R  N  F  S  S  F  C  I  *  G  F  W  R  L  K  P  S  W  F  S  T  L  L  E  F  L  K  F  I  R  L  T  I  K  R  T  *  K  L  Y  R  *  I  R  N  S  L  C  K  D  L  F  F  T  V  S  I  F  K  Y  L  I  Y  L  P  F  V  T  E  K  M  T  N  S  S  Q  T  N  A  G  T  V  S  A  A  T  T  T  V  T  H  N  R  S  N  A  A  L  A  P  A  E  K  P  A  K  F  S  G  V  D  F  K  R  W  Q  Q  K  L  F  F  Y  I  T  T  L  G  L  Q  K  F  I  N  E  N  V  P  V  M  S  D  K  T  P  A  D  E  R  F  L  V  T  E  A  W  T  H  S  D  F  L  C  K  N  Y  I  L  S  G  L  Q  D  D  L  Y  N  V  Y  S  N  A  K  T  S  K  E  L  W  D  A  L  E  K  K  Y  K  T  E  D  A  G  M  N  K  F  I  V  A  K  F  L  D  Y  K  M  I  D  S  K  T  V  V  T  Q  V  Q  E  L  Q  V  I  I  H  D  L  L  A  E  G  L  I  V  D  D  A  F  Q  V  A  A  I  I  E  K  L  P  P  L  W  K  D  F  K  N  Y  L  K  H  K  R  K  E  M  T  V   </first_frame>
            <second_frame>  L  I  R  F  I  L  G  E  I  N  P  *  P  W  V  Q  *  G  D  *  I  S  *  G  H  T  V  V  S  V  D  S  D  *  F  L  Y  F  K  F  F  P  L  H  L  V  S  A  S  V  H  *  L  H  K  Y  K  L  L  *  K  *  Q  S  *  E  I  L  A  V  F  V  F  E  V  S  G  D  *  N  L  H  G  F  L  L  C  L  N  F  *  N  S  F  D  *  R  L  K  E  H  K  N  F  I  V  K  S  E  T  V  C  V  K  I  Y  F  L  L  L  V  F  L  N  T  *  F  I  C  H  L  *  Q  K  K  *  L  I  Q  V  K  Q  M  L  E  Q  *  V  L  Q  Q  Q  R  L  H  I  I  V  Q  M  L  P  *  H  R  L  R  N  L  Q  S  F  L  E  S  T  L  R  D  G  S  K  S  C  S  S  I  S  L  R  W  V  C  R  S  S  S  M  R  M  F  L  L  C  Q  I  K  L  R  L  M  N  D  S  W  *  Q  K  H  G  H  T  Q  I  F  C  V  K  I  I  F  *  V  V  F  K  M  I  C  T  M  C  T  A  M  P  K  P  Q  K  N  S  G  M  L  *  K  R  S  T  K  Q  K  M  P  E  *  I  N  S  L  W  Q  N  F  *  T  I  R  *  *  T  V  R  L  S  S  P  K  F  K  N  C  R  S  *  S  M  I  S  L  L  K  D  *  S  W  M  M  L  F  K  W  L  Q  L  L  K  S  Y  L  H  C  G  R  T  L  K  T  T  *  N  T  N  V  R  K  *  L  L  </second_frame>
            <third_frame>   *  F  V  L  S  W  E  K  L  I  H  N  L  G  Y  S  E  G  I  K  F  L  K  D  T  Q  *  F  L  W  T  R  I  N  S  C  I  L  N  F  F  R  F  I  L  F  L  L  L  F  I  N  F  I  N  T  S  Y  C  K  N  N  N  L  K  K  F  *  Q  F  L  Y  L  R  F  L  E  I  K  T  F  M  V  F  Y  S  A  *  I  F  K  I  H  S  I  N  D  *  K  N  I  K  T  L  S  L  N  Q  K  Q  F  V  *  R  F  I  F  Y  C  *  Y  F  *  I  L  N  L  S  A  I  C  D  R  K  N  D  *  F  K  S  N  K  C  W  N  S  K  C  C  N  N  N  G  Y  T  *  S  F  K  C  C  L  S  T  G  *  E  T  C  K  V  F  W  S  R  L  *  E  M  A  A  K  V  V  L  L  Y  H  Y  V  G  S  A  E  V  H  Q  *  E  C  S  C  Y  V  R  *  N  S  G  *  *  T  I  L  G  N  R  S  M  D  T  L  R  F  F  V  *  K  L  Y  F  E  W  S  S  R  *  S  V  Q  C  V  Q  Q  C  Q  N  L  K  R  T  L  G  C  F  R  K  E  V  Q  N  R  R  C  R  N  E  *  I  H  C  G  K  I  S  R  L  *  D  D  R  Q  *  D  C  R  H  P  S  S  R  I  A  G  H  N  P  *  S  P  C  *  R  I  D  R  G  *  C  F  S  S  G  C  N  Y  *  K  V  T  S  I  V  E  G  L  *  K  L  L  E  T  Q  T  *  G  N  D  C  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="-"/>
                <serials PGL_serial="16" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102857" stop="102159"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>699</number_coding_nucleotides>
                  <number_encoded_amino_acids>233</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRNSLCKDLFFTVSIFKYLIYLPFVTEKMTNSSQTNAGTVSAATTTVTHNRSNAALAPAEKPAKFSGVDFKRWQQKLFFYITTLGLQKFINENVPVMSDKTPADERFLVTEAWTHSDFLCKNYILSGLQDDLYNVYSNAKTSKELWDALEKKYKTEDAGMNKFIVAKFLDYKMIDSKTVVTQVQELQVIIHDLLAEGLIVDDAFQVAAIIEKLPPLWKDFKNYLKHKRKEMTV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="17" PGL_strand="-" PGL_start="114482" PGL_stop="114051"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="114482" e_stop="114051"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.912"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.912">
            <gDNA_exon_boundary e_start="114482" e_stop="114051" e_length="432"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="114482" stop="114051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365858" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="17" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTTGATGTACTCTGATGGAATTCAGAGTAGTACCAGGTACCTCATCACACTTTTCCACTTTATCAGCCTCTTCAGGTAGACTATGATTTTGATCATCAAGGTCATTTTTCAATTGTTGATCTGCATCAGCTTCACTTCTTTCAATTTTCTGTGAATTGAACAGCTTGATCACATCATCTTCATCATTTGATCCATTATTTTTCAAGCTTCCATCTTCATCAAATACAACATGAATGCTTTCTTCAGTGCATTTGAGTTCGTTTGTTGAATATTCTGTAAGCCTTACTCGATGAAGAATATCCAACAAATACTCCTTCATCACTCCTAGGATCAAATTTTCCCAGATCATCCTTTCCATTGTTCAGCACAAAACATCTGCATCCAAATGCTCTAAGATAGCTCCGCATAGGCTTTCTGTTGTTGAGCAACTCA</gDNA_template>
            <first_frame> F  D  V  L  *  W  N  S  E  *  Y  Q  V  P  H  H  T  F  P  L  Y  Q  P  L  Q  V  D  Y  D  F  D  H  Q  G  H  F  S  I  V  D  L  H  Q  L  H  F  F  Q  F  S  V  N  *  T  A  *  S  H  H  L  H  H  L  I  H  Y  F  S  S  F  H  L  H  Q  I  Q  H  E  C  F  L  Q  C  I  *  V  R  L  L  N  I  L  *  A  L  L  D  E  E  Y  P  T  N  T  P  S  S  L  L  G  S  N  F  P  R  S  S  F  P  L  F  S  T  K  H  L  H  P  N  A  L  R  *  L  R  I  G  F  L  L  L  S  N  S </first_frame>
            <second_frame>  L  M  Y  S  D  G  I  Q  S  S  T  R  Y  L  I  T  L  F  H  F  I  S  L  F  R  *  T  M  I  L  I  I  K  V  I  F  Q  L  L  I  C  I  S  F  T  S  F  N  F  L  *  I  E  Q  L  D  H  I  I  F  I  I  *  S  I  I  F  Q  A  S  I  F  I  K  Y  N  M  N  A  F  F  S  A  F  E  F  V  C  *  I  F  C  K  P  Y  S  M  K  N  I  Q  Q  I  L  L  H  H  S  *  D  Q  I  F  P  D  H  P  F  H  C  S  A  Q  N  I  C  I  Q  M  L  *  D  S  S  A  *  A  F  C  C  *  A  T   </second_frame>
            <third_frame>   *  C  T  L  M  E  F  R  V  V  P  G  T  S  S  H  F  S  T  L  S  A  S  S  G  R  L  *  F  *  S  S  R  S  F  F  N  C  *  S  A  S  A  S  L  L  S  I  F  C  E  L  N  S  L  I  T  S  S  S  S  F  D  P  L  F  F  K  L  P  S  S  S  N  T  T  *  M  L  S  S  V  H  L  S  S  F  V  E  Y  S  V  S  L  T  R  *  R  I  S  N  K  Y  S  F  I  T  P  R  I  K  F  S  Q  I  I  L  S  I  V  Q  H  K  T  S  A  S  K  C  S  K  I  A  P  H  R  L  S  V  V  E  Q  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0034P15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="18" PGL_strand="+" PGL_start="127329" PGL_stop="135278"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="127329" e_stop="127723"/>
            <exon e_start="129723" e_stop="130035"/>
            <exon e_start="131748" e_stop="131849"/>
            <exon e_start="133552" e_stop="134339"/>
            <exon e_start="134648" e_stop="135274"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="0.962"/>
          <exon-intron don_prob="0.999" acc_prob="0.977" e_score="0.946"/>
          <exon-intron don_prob="1.000" acc_prob="0.956" e_score="0.980"/>
          <exon-intron don_prob="0.999" acc_prob="0.976" e_score="0.995"/>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="127329" e_stop="127723" e_length="395"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="127724" i_stop="129722" i_length="1999"/>
          </intron>
          <exon e_serial="2" e_score="0.946">
            <gDNA_exon_boundary e_start="129723" e_stop="130035" e_length="313"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.977">
            <gDNA_intron_boundary i_start="130036" i_stop="131747" i_length="1712"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="131748" e_stop="131849" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.956">
            <gDNA_intron_boundary i_start="131850" i_stop="133551" i_length="1702"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="133552" e_stop="134339" e_length="788"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.976">
            <gDNA_intron_boundary i_start="134340" i_stop="134647" i_length="308"/>
          </intron>
          <exon e_serial="5" e_score="0.948">
            <gDNA_exon_boundary e_start="134648" e_stop="135274" e_length="627"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127329" stop="127723"/>
              <exon start="129723" stop="129921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127329" stop="127723"/>
              <exon start="129723" stop="129901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127329" stop="127723"/>
              <exon start="129723" stop="129887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127651" stop="127723"/>
              <exon start="129723" stop="130035"/>
              <exon start="131748" stop="131849"/>
              <exon start="133552" stop="133856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129931" stop="130035"/>
              <exon start="131748" stop="131849"/>
              <exon start="133552" stop="133847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131808" stop="131849"/>
              <exon start="133552" stop="134182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131808" stop="131849"/>
              <exon start="133552" stop="134034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134015" stop="134339"/>
              <exon start="134648" stop="134801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134186" stop="134339"/>
              <exon start="134648" stop="134987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134188" stop="134339"/>
              <exon start="134648" stop="135083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134249" stop="134339"/>
              <exon start="134648" stop="135260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432100" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134917" stop="135274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134953" stop="135256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369810" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATTCCCATTTAAAGGGGAAAAATATTCTCAAAATTTTTCTGTTCACAACACTGCATTTCTGCCTTAAACTATACCCCAATGATTTGAATTCGAATTTTTTTATCTGATTTTATAATTAATTTTAAATATAAATATATAAATAATATATCAAAATTCATATTTACAATTATAATAAATTTTAAATTCTAAATTCGATGATTGGCCCACAGTGGAACAATGTTAGCTCTAAATCATGCCATCTATAAATATATATACATTGGCTTACCATTTTGGTCAATTGTTTCACAAAGTTTTCTTCTCTCACTTTATTTATAGTATATGTGTTTTTTTCACTTAAATCCAAGCTGACATATATATTTCCCTTCTCTTCGATTCTAGCTATCGTTTATTGAG : GAAGAATATAAATGAAGATGGTGGAGGAAAGGGAGAATAAGCTTGATCCACAACAAGTGATTGATGAATTTGAGCTATTAAGCAAAGATGCTGGGAAAATTCAAGAAAAGACCTTACAAAAGATTCTTGAAGAAAATGGAAGGACAGAATATTTGCAACAATGGGGTCTTAATGGGAAAACAGATCAAGTTTCTTTCAAGAATTGTGTTCCTCTTGTTACACATAAGGATTTGGAGCCTTACATTTGTAGAATTGTTGATGGTGATCTTACTCCTATTCTCACTAGAAAGCCTATTACTACCATCTCGTTGAG : TTCTGGTACAACTCAAGGAAAGCCAAAATTTGTACCTTTCAATGAAGAATTGATGGAATCCACCATGCAAATATTCAAGACTTCTTTTGCCTTTAGGAACAG : AGAATTCCCAGTTGTAAATGGGAAAGCATTACAGTTCATTTATGGAAGCAAACAGTTCAAGACGAAGGGAGGTTTAGCAGCTGGAACAGCCACAACAAATGTGTATCGAAATTCGCAATTCAAGAAGACAATGAAAGCAATGCAGACCCCATGTTGTAGCCCTGATGAAGTGATATTCGGCCCTGATTTCCATCAGTCCTTGTACTGTCATCTCCTGTGTGGTCTCATTTTACGTAACGAAGTTCAAGTTGTCTCATCTACATTTGCTCATAGTATTGTCCATGCTTTTAGACAATTCGAACAAGTATGGCAAGAACTTGTTGCTAACATAAGGGACGGAGTCCTTTCAAGTCGCGTAAATGTCCCTTCTATAAGATCAGCAATGTCAAAATTACTCAAACCTGATCCAGAACTGGCTGATACTATTTATAACAAGTGCATTCGGTTAAGTAATTGGTACGGGTTGATACCTGAATTATTCCCCAACACAAGGTACATATATGGTATCATGACCGGATCAATGGAACCTTACTTGACGAAATTGAGGCATTATGCAGGGGATTTACCTCTGCTTAGTGCAGATTACGGATCTTCTGAAGGATGGATCGGAGCAAATGTTAATCCTGAATTGCCTCCTGAGCTAGTTACTTATGCTGTACTTCCTAATATTGGTTATTTCGAATTCATTCCTCTCGTGGAAAATGTAGATGGCGTGGAGGCTACACCAGTTGGTTTAACTGAAGTTAAACTCGATGAAGAGTATGAAATTGTTGTCACCAATTTCGCTG : GTTTATATCGATACAGGCTTGGTGATGTGGTAAAGATAAAAGGATTCCACAATCGCACTCCCGAGCTCCAATTTATTTGTCGTAGGAATCTCTTACTAAGCATCAACATCGACAAAAACACTGAGAAAGATTTACAACTAGCCGTGGAAGCAGCAGCACAGCTGCTATTAAACGAGAAGTTAGAAGTAGTCGATTTCTCTAGCAACGTAAACACAACAGCTGATCCAGGGCACTATGTAATCTTCTGGGAACTGAATGGTGAGGCAAGTGAGGAAATTCTGAAAGAATGTTGTAATTGTTTGGACAAATCTTTCGTCGATGCTGGCTATGTTAGCTCTCGGAAGGTCAAAACCATCGGTGCCCTTGAGCTACGGATAGTGAAGAGAGGGACATTTCATAAGATTTTAGATCATTTTGTAGGACTAGGAGCAGCAGTTAGCCAGTTCAAAACTCCGAGATGTGTCGGTACAACGAATCTCTCTGTGCTGCAAATATTGACTAGTAATGTTGTTGAGAGCTATTTTAGTACTGCATTTAGTTGAATTATATGTATGTTTGTTCCCAGAATTGTAAGCTGATTACTTTTCATATCTTAATAATACACTCTGAATTTGTACAAATTTTGTA</gDNA_template>
            <first_frame> *  F  P  F  K  G  E  K  Y  S  Q  N  F  S  V  H  N  T  A  F  L  P  *  T  I  P  Q  *  F  E  F  E  F  F  Y  L  I  L  *  L  I  L  N  I  N  I  *  I  I  Y  Q  N  S  Y  L  Q  L  *  *  I  L  N  S  K  F  D  D  W  P  T  V  E  Q  C  *  L  *  I  M  P  S  I  N  I  Y  T  L  A  Y  H  F  G  Q  L  F  H  K  V  F  F  S  H  F  I  Y  S  I  C  V  F  F  T  *  I  Q  A  D  I  Y  I  S  L  L  F  D  S  S  Y  R  L  L  R :   K  N  I  N  E  D  G  G  G  K  G  E  *  A  *  S  T  T  S  D  *  *  I  *  A  I  K  Q  R  C  W  E  N  S  R  K  D  L  T  K  D  S  *  R  K  W  K  D  R  I  F  A  T  M  G  S  *  W  E  N  R  S  S  F  F  Q  E  L  C  S  S  C  Y  T  *  G  F  G  A  L  H  L  *  N  C  *  W  *  S  Y  S  Y  S  H  *  K  A  Y  Y  Y  H  L  V  E  :  F  W  Y  N  S  R  K  A  K  I  C  T  F  Q  *  R  I  D  G  I  H  H  A  N  I  Q  D  F  F  C  L  *  E  Q  :  R  I  P  S  C  K  W  E  S  I  T  V  H  L  W  K  Q  T  V  Q  D  E  G  R  F  S  S  W  N  S  H  N  K  C  V  S  K  F  A  I  Q  E  D  N  E  S  N  A  D  P  M  L  *  P  *  *  S  D  I  R  P  *  F  P  S  V  L  V  L  S  S  P  V  W  S  H  F  T  *  R  S  S  S  C  L  I  Y  I  C  S  *  Y  C  P  C  F  *  T  I  R  T  S  M  A  R  T  C  C  *  H  K  G  R  S  P  F  K  S  R  K  C  P  F  Y  K  I  S  N  V  K  I  T  Q  T  *  S  R  T  G  *  Y  Y  L  *  Q  V  H  S  V  K  *  L  V  R  V  D  T  *  I  I  P  Q  H  K  V  H  I  W  Y  H  D  R  I  N  G  T  L  L  D  E  I  E  A  L  C  R  G  F  T  S  A  *  C  R  L  R  I  F  *  R  M  D  R  S  K  C  *  S  *  I  A  S  *  A  S  Y  L  C  C  T  S  *  Y  W  L  F  R  I  H  S  S  R  G  K  C  R  W  R  G  G  Y  T  S  W  F  N  *  S  *  T  R  *  R  V  *  N  C  C  H  Q  F  R  W :   F  I  S  I  Q  A  W  *  C  G  K  D  K  R  I  P  Q  S  H  S  R  A  P  I  Y  L  S  *  E  S  L  T  K  H  Q  H  R  Q  K  H  *  E  R  F  T  T  S  R  G  S  S  S  T  A  A  I  K  R  E  V  R  S  S  R  F  L  *  Q  R  K  H  N  S  *  S  R  A  L  C  N  L  L  G  T  E  W  *  G  K  *  G  N  S  E  R  M  L  *  L  F  G  Q  I  F  R  R  C  W  L  C  *  L  S  E  G  Q  N  H  R  C  P  *  A  T  D  S  E  E  R  D  I  S  *  D  F  R  S  F  C  R  T  R  S  S  S  *  P  V  Q  N  S  E  M  C  R  Y  N  E  S  L  C  A  A  N  I  D  *  *  C  C  *  E  L  F  *  Y  C  I  *  L  N  Y  M  Y  V  C  S  Q  N  C  K  L  I  T  F  H  I  L  I  I  H  S  E  F  V  Q  I  L   </first_frame>
            <second_frame>  N  S  H  L  K  G  K  N  I  L  K  I  F  L  F  T  T  L  H  F  C  L  K  L  Y  P  N  D  L  N  S  N  F  F  I  *  F  Y  N  *  F  *  I  *  I  Y  K  *  Y  I  K  I  H  I  Y  N  Y  N  K  F  *  I  L  N  S  M  I  G  P  Q  W  N  N  V  S  S  K  S  C  H  L  *  I  Y  I  H  W  L  T  I  L  V  N  C  F  T  K  F  S  S  L  T  L  F  I  V  Y  V  F  F  S  L  K  S  K  L  T  Y  I  F  P  F  S  S  I  L  A  I  V  Y  *   : G  R  I  *  M  K  M  V  E  E  R  E  N  K  L  D  P  Q  Q  V  I  D  E  F  E  L  L  S  K  D  A  G  K  I  Q  E  K  T  L  Q  K  I  L  E  E  N  G  R  T  E  Y  L  Q  Q  W  G  L  N  G  K  T  D  Q  V  S  F  K  N  C  V  P  L  V  T  H  K  D  L  E  P  Y  I  C  R  I  V  D  G  D  L  T  P  I  L  T  R  K  P  I  T  T  I  S  L  S :   S  G  T  T  Q  G  K  P  K  F  V  P  F  N  E  E  L  M  E  S  T  M  Q  I  F  K  T  S  F  A  F  R  N  R :   E  F  P  V  V  N  G  K  A  L  Q  F  I  Y  G  S  K  Q  F  K  T  K  G  G  L  A  A  G  T  A  T  T  N  V  Y  R  N  S  Q  F  K  K  T  M  K  A  M  Q  T  P  C  C  S  P  D  E  V  I  F  G  P  D  F  H  Q  S  L  Y  C  H  L  L  C  G  L  I  L  R  N  E  V  Q  V  V  S  S  T  F  A  H  S  I  V  H  A  F  R  Q  F  E  Q  V  W  Q  E  L  V  A  N  I  R  D  G  V  L  S  S  R  V  N  V  P  S  I  R  S  A  M  S  K  L  L  K  P  D  P  E  L  A  D  T  I  Y  N  K  C  I  R  L  S  N  W  Y  G  L  I  P  E  L  F  P  N  T  R  Y  I  Y  G  I  M  T  G  S  M  E  P  Y  L  T  K  L  R  H  Y  A  G  D  L  P  L  L  S  A  D  Y  G  S  S  E  G  W  I  G  A  N  V  N  P  E  L  P  P  E  L  V  T  Y  A  V  L  P  N  I  G  Y  F  E  F  I  P  L  V  E  N  V  D  G  V  E  A  T  P  V  G  L  T  E  V  K  L  D  E  E  Y  E  I  V  V  T  N  F  A   : G  L  Y  R  Y  R  L  G  D  V  V  K  I  K  G  F  H  N  R  T  P  E  L  Q  F  I  C  R  R  N  L  L  L  S  I  N  I  D  K  N  T  E  K  D  L  Q  L  A  V  E  A  A  A  Q  L  L  L  N  E  K  L  E  V  V  D  F  S  S  N  V  N  T  T  A  D  P  G  H  Y  V  I  F  W  E  L  N  G  E  A  S  E  E  I  L  K  E  C  C  N  C  L  D  K  S  F  V  D  A  G  Y  V  S  S  R  K  V  K  T  I  G  A  L  E  L  R  I  V  K  R  G  T  F  H  K  I  L  D  H  F  V  G  L  G  A  A  V  S  Q  F  K  T  P  R  C  V  G  T  T  N  L  S  V  L  Q  I  L  T  S  N  V  V  E  S  Y  F  S  T  A  F  S  *  I  I  C  M  F  V  P  R  I  V  S  *  L  L  F  I  S  *  *  Y  T  L  N  L  Y  K  F  C  </second_frame>
            <third_frame>   I  P  I  *  R  G  K  I  F  S  K  F  F  C  S  Q  H  C  I  S  A  L  N  Y  T  P  M  I  *  I  R  I  F  L  S  D  F  I  I  N  F  K  Y  K  Y  I  N  N  I  S  K  F  I  F  T  I  I  I  N  F  K  F  *  I  R  *  L  A  H  S  G  T  M  L  A  L  N  H  A  I  Y  K  Y  I  Y  I  G  L  P  F  W  S  I  V  S  Q  S  F  L  L  S  L  Y  L  *  Y  M  C  F  F  H  L  N  P  S  *  H  I  Y  F  P  S  L  R  F  *  L  S  F  I  E  :  E  E  Y  K  *  R  W  W  R  K  G  R  I  S  L  I  H  N  K  *  L  M  N  L  S  Y  *  A  K  M  L  G  K  F  K  K  R  P  Y  K  R  F  L  K  K  M  E  G  Q  N  I  C  N  N  G  V  L  M  G  K  Q  I  K  F  L  S  R  I  V  F  L  L  L  H  I  R  I  W  S  L  T  F  V  E  L  L  M  V  I  L  L  L  F  S  L  E  S  L  L  L  P  S  R  *   : V  L  V  Q  L  K  E  S  Q  N  L  Y  L  S  M  K  N  *  W  N  P  P  C  K  Y  S  R  L  L  L  P  L  G  T   : E  N  S  Q  L  *  M  G  K  H  Y  S  S  F  M  E  A  N  S  S  R  R  R  E  V  *  Q  L  E  Q  P  Q  Q  M  C  I  E  I  R  N  S  R  R  Q  *  K  Q  C  R  P  H  V  V  A  L  M  K  *  Y  S  A  L  I  S  I  S  P  C  T  V  I  S  C  V  V  S  F  Y  V  T  K  F  K  L  S  H  L  H  L  L  I  V  L  S  M  L  L  D  N  S  N  K  Y  G  K  N  L  L  L  T  *  G  T  E  S  F  Q  V  A  *  M  S  L  L  *  D  Q  Q  C  Q  N  Y  S  N  L  I  Q  N  W  L  I  L  F  I  T  S  A  F  G  *  V  I  G  T  G  *  Y  L  N  Y  S  P  T  Q  G  T  Y  M  V  S  *  P  D  Q  W  N  L  T  *  R  N  *  G  I  M  Q  G  I  Y  L  C  L  V  Q  I  T  D  L  L  K  D  G  S  E  Q  M  L  I  L  N  C  L  L  S  *  L  L  M  L  Y  F  L  I  L  V  I  S  N  S  F  L  S  W  K  M  *  M  A  W  R  L  H  Q  L  V  *  L  K  L  N  S  M  K  S  M  K  L  L  S  P  I  S  L  :  V  Y  I  D  T  G  L  V  M  W  *  R  *  K  D  S  T  I  A  L  P  S  S  N  L  F  V  V  G  I  S  Y  *  A  S  T  S  T  K  T  L  R  K  I  Y  N  *  P  W  K  Q  Q  H  S  C  Y  *  T  R  S  *  K  *  S  I  S  L  A  T  *  T  Q  Q  L  I  Q  G  T  M  *  S  S  G  N  *  M  V  R  Q  V  R  K  F  *  K  N  V  V  I  V  W  T  N  L  S  S  M  L  A  M  L  A  L  G  R  S  K  P  S  V  P  L  S  Y  G  *  *  R  E  G  H  F  I  R  F  *  I  I  L  *  D  *  E  Q  Q  L  A  S  S  K  L  R  D  V  S  V  Q  R  I  S  L  C  C  K  Y  *  L  V  M  L  L  R  A  I  L  V  L  H  L  V  E  L  Y  V  C  L  F  P  E  L  *  A  D  Y  F  S  Y  L  N  N  T  L  *  I  C  T  N  F  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129734" stop="130035"/>
                    <exon start="131748" stop="131849"/>
                    <exon start="133552" stop="134339"/>
                    <exon start="134648" stop="135189"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1731</number_coding_nucleotides>
                  <number_encoded_amino_acids>577</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MKMVEERENKLDPQQVIDEFELLSKDAGKIQEKTLQKILEENGRTEYLQQWGLNGKTDQVSFKNCVPLVTHKDLEPYICRIVDGDLTPILTRKPITTISLSSGTTQGKPKFVPFNEELMESTMQIFKTSFAFRNREFPVVNGKALQFIYGSKQFKTKGGLAAGTATTNVYRNSQFKKTMKAMQTPCCSPDEVIFGPDFHQSLYCHLLCGLILRNEVQVVSSTFAHSIVHAFRQFEQVWQELVANIRDGVLSSRVNVPSIRSAMSKLLKPDPELADTIYNKCIRLSNWYGLIPELFPNTRYIYGIMTGSMEPYLTKLRHYAGDLPLLSADYGSSEGWIGANVNPELPPELVTYAVLPNIGYFEFIPLVENVDGVEATPVGLTEVKLDEEYEIVVTNFAGLYRYRLGDVVKIKGFHNRTPELQFICRRNLLLSINIDKNTEKDLQLAVEAAAQLLLNEKLEVVDFSSNVNTTADPGHYVIFWELNGEASEEILKECCNCLDKSFVDAGYVSSRKVKTIGALELRIVKRGTFHKILDHFVGLGAAVSQFKTPRCVGTTNLSVLQILTSNVVESYFSTAFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="127329" e_stop="127723"/>
            <exon e_start="129723" e_stop="130035"/>
            <exon e_start="131705" e_stop="131849"/>
            <exon e_start="133552" e_stop="134339"/>
            <exon e_start="134648" e_stop="135274"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="0.962"/>
          <exon-intron don_prob="0.999" acc_prob="0.000" e_score="0.946"/>
          <exon-intron don_prob="1.000" acc_prob="0.956" e_score="0.938"/>
          <exon-intron don_prob="0.999" acc_prob="0.976" e_score="0.995"/>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="127329" e_stop="127723" e_length="395"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="127724" i_stop="129722" i_length="1999"/>
          </intron>
          <exon e_serial="2" e_score="0.946">
            <gDNA_exon_boundary e_start="129723" e_stop="130035" e_length="313"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.000">
            <gDNA_intron_boundary i_start="130036" i_stop="131704" i_length="1669"/>
          </intron>
          <exon e_serial="3" e_score="0.938">
            <gDNA_exon_boundary e_start="131705" e_stop="131849" e_length="145"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.956">
            <gDNA_intron_boundary i_start="131850" i_stop="133551" i_length="1702"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="133552" e_stop="134339" e_length="788"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.976">
            <gDNA_intron_boundary i_start="134340" i_stop="134647" i_length="308"/>
          </intron>
          <exon e_serial="5" e_score="0.948">
            <gDNA_exon_boundary e_start="134648" e_stop="135274" e_length="627"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127329" stop="127723"/>
              <exon start="129723" stop="129921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127329" stop="127723"/>
              <exon start="129723" stop="129901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127329" stop="127723"/>
              <exon start="129723" stop="129887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127625" stop="127723"/>
              <exon start="129723" stop="130035"/>
              <exon start="131705" stop="131849"/>
              <exon start="133552" stop="133706"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E406966" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131808" stop="131849"/>
              <exon start="133552" stop="134182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131808" stop="131849"/>
              <exon start="133552" stop="134034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134015" stop="134339"/>
              <exon start="134648" stop="134801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134186" stop="134339"/>
              <exon start="134648" stop="134987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134188" stop="134339"/>
              <exon start="134648" stop="135083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134249" stop="134339"/>
              <exon start="134648" stop="135260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432100" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134917" stop="135274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134953" stop="135256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369810" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATTCCCATTTAAAGGGGAAAAATATTCTCAAAATTTTTCTGTTCACAACACTGCATTTCTGCCTTAAACTATACCCCAATGATTTGAATTCGAATTTTTTTATCTGATTTTATAATTAATTTTAAATATAAATATATAAATAATATATCAAAATTCATATTTACAATTATAATAAATTTTAAATTCTAAATTCGATGATTGGCCCACAGTGGAACAATGTTAGCTCTAAATCATGCCATCTATAAATATATATACATTGGCTTACCATTTTGGTCAATTGTTTCACAAAGTTTTCTTCTCTCACTTTATTTATAGTATATGTGTTTTTTTCACTTAAATCCAAGCTGACATATATATTTCCCTTCTCTTCGATTCTAGCTATCGTTTATTGAG : GAAGAATATAAATGAAGATGGTGGAGGAAAGGGAGAATAAGCTTGATCCACAACAAGTGATTGATGAATTTGAGCTATTAAGCAAAGATGCTGGGAAAATTCAAGAAAAGACCTTACAAAAGATTCTTGAAGAAAATGGAAGGACAGAATATTTGCAACAATGGGGTCTTAATGGGAAAACAGATCAAGTTTCTTTCAAGAATTGTGTTCCTCTTGTTACACATAAGGATTTGGAGCCTTACATTTGTAGAATTGTTGATGGTGATCTTACTCCTATTCTCACTAGAAAGCCTATTACTACCATCTCGTTGAG : AAGTTGAAGAACAAAAAGTTTGATGATAATTGTTGAACTGCAGTTCTGGTACAACTCAAGGAAAGCCAAAATTTGTACCTTTCAATGAAGAATTGATGGAATCCACCATGCAAATATTCAAGACTTCTTTTGCCTTTAGGAACAG : AGAATTCCCAGTTGTAAATGGGAAAGCATTACAGTTCATTTATGGAAGCAAACAGTTCAAGACGAAGGGAGGTTTAGCAGCTGGAACAGCCACAACAAATGTGTATCGAAATTCGCAATTCAAGAAGACAATGAAAGCAATGCAGACCCCATGTTGTAGCCCTGATGAAGTGATATTCGGCCCTGATTTCCATCAGTCCTTGTACTGTCATCTCCTGTGTGGTCTCATTTTACGTAACGAAGTTCAAGTTGTCTCATCTACATTTGCTCATAGTATTGTCCATGCTTTTAGACAATTCGAACAAGTATGGCAAGAACTTGTTGCTAACATAAGGGACGGAGTCCTTTCAAGTCGCGTAAATGTCCCTTCTATAAGATCAGCAATGTCAAAATTACTCAAACCTGATCCAGAACTGGCTGATACTATTTATAACAAGTGCATTCGGTTAAGTAATTGGTACGGGTTGATACCTGAATTATTCCCCAACACAAGGTACATATATGGTATCATGACCGGATCAATGGAACCTTACTTGACGAAATTGAGGCATTATGCAGGGGATTTACCTCTGCTTAGTGCAGATTACGGATCTTCTGAAGGATGGATCGGAGCAAATGTTAATCCTGAATTGCCTCCTGAGCTAGTTACTTATGCTGTACTTCCTAATATTGGTTATTTCGAATTCATTCCTCTCGTGGAAAATGTAGATGGCGTGGAGGCTACACCAGTTGGTTTAACTGAAGTTAAACTCGATGAAGAGTATGAAATTGTTGTCACCAATTTCGCTG : GTTTATATCGATACAGGCTTGGTGATGTGGTAAAGATAAAAGGATTCCACAATCGCACTCCCGAGCTCCAATTTATTTGTCGTAGGAATCTCTTACTAAGCATCAACATCGACAAAAACACTGAGAAAGATTTACAACTAGCCGTGGAAGCAGCAGCACAGCTGCTATTAAACGAGAAGTTAGAAGTAGTCGATTTCTCTAGCAACGTAAACACAACAGCTGATCCAGGGCACTATGTAATCTTCTGGGAACTGAATGGTGAGGCAAGTGAGGAAATTCTGAAAGAATGTTGTAATTGTTTGGACAAATCTTTCGTCGATGCTGGCTATGTTAGCTCTCGGAAGGTCAAAACCATCGGTGCCCTTGAGCTACGGATAGTGAAGAGAGGGACATTTCATAAGATTTTAGATCATTTTGTAGGACTAGGAGCAGCAGTTAGCCAGTTCAAAACTCCGAGATGTGTCGGTACAACGAATCTCTCTGTGCTGCAAATATTGACTAGTAATGTTGTTGAGAGCTATTTTAGTACTGCATTTAGTTGAATTATATGTATGTTTGTTCCCAGAATTGTAAGCTGATTACTTTTCATATCTTAATAATACACTCTGAATTTGTACAAATTTTGTA</gDNA_template>
            <first_frame> *  F  P  F  K  G  E  K  Y  S  Q  N  F  S  V  H  N  T  A  F  L  P  *  T  I  P  Q  *  F  E  F  E  F  F  Y  L  I  L  *  L  I  L  N  I  N  I  *  I  I  Y  Q  N  S  Y  L  Q  L  *  *  I  L  N  S  K  F  D  D  W  P  T  V  E  Q  C  *  L  *  I  M  P  S  I  N  I  Y  T  L  A  Y  H  F  G  Q  L  F  H  K  V  F  F  S  H  F  I  Y  S  I  C  V  F  F  T  *  I  Q  A  D  I  Y  I  S  L  L  F  D  S  S  Y  R  L  L  R :   K  N  I  N  E  D  G  G  G  K  G  E  *  A  *  S  T  T  S  D  *  *  I  *  A  I  K  Q  R  C  W  E  N  S  R  K  D  L  T  K  D  S  *  R  K  W  K  D  R  I  F  A  T  M  G  S  *  W  E  N  R  S  S  F  F  Q  E  L  C  S  S  C  Y  T  *  G  F  G  A  L  H  L  *  N  C  *  W  *  S  Y  S  Y  S  H  *  K  A  Y  Y  Y  H  L  V  E  :  K  L  K  N  K  K  F  D  D  N  C  *  T  A  V  L  V  Q  L  K  E  S  Q  N  L  Y  L  S  M  K  N  *  W  N  P  P  C  K  Y  S  R  L  L  L  P  L  G  T   : E  N  S  Q  L  *  M  G  K  H  Y  S  S  F  M  E  A  N  S  S  R  R  R  E  V  *  Q  L  E  Q  P  Q  Q  M  C  I  E  I  R  N  S  R  R  Q  *  K  Q  C  R  P  H  V  V  A  L  M  K  *  Y  S  A  L  I  S  I  S  P  C  T  V  I  S  C  V  V  S  F  Y  V  T  K  F  K  L  S  H  L  H  L  L  I  V  L  S  M  L  L  D  N  S  N  K  Y  G  K  N  L  L  L  T  *  G  T  E  S  F  Q  V  A  *  M  S  L  L  *  D  Q  Q  C  Q  N  Y  S  N  L  I  Q  N  W  L  I  L  F  I  T  S  A  F  G  *  V  I  G  T  G  *  Y  L  N  Y  S  P  T  Q  G  T  Y  M  V  S  *  P  D  Q  W  N  L  T  *  R  N  *  G  I  M  Q  G  I  Y  L  C  L  V  Q  I  T  D  L  L  K  D  G  S  E  Q  M  L  I  L  N  C  L  L  S  *  L  L  M  L  Y  F  L  I  L  V  I  S  N  S  F  L  S  W  K  M  *  M  A  W  R  L  H  Q  L  V  *  L  K  L  N  S  M  K  S  M  K  L  L  S  P  I  S  L  :  V  Y  I  D  T  G  L  V  M  W  *  R  *  K  D  S  T  I  A  L  P  S  S  N  L  F  V  V  G  I  S  Y  *  A  S  T  S  T  K  T  L  R  K  I  Y  N  *  P  W  K  Q  Q  H  S  C  Y  *  T  R  S  *  K  *  S  I  S  L  A  T  *  T  Q  Q  L  I  Q  G  T  M  *  S  S  G  N  *  M  V  R  Q  V  R  K  F  *  K  N  V  V  I  V  W  T  N  L  S  S  M  L  A  M  L  A  L  G  R  S  K  P  S  V  P  L  S  Y  G  *  *  R  E  G  H  F  I  R  F  *  I  I  L  *  D  *  E  Q  Q  L  A  S  S  K  L  R  D  V  S  V  Q  R  I  S  L  C  C  K  Y  *  L  V  M  L  L  R  A  I  L  V  L  H  L  V  E  L  Y  V  C  L  F  P  E  L  *  A  D  Y  F  S  Y  L  N  N  T  L  *  I  C  T  N  F  V </first_frame>
            <second_frame>  N  S  H  L  K  G  K  N  I  L  K  I  F  L  F  T  T  L  H  F  C  L  K  L  Y  P  N  D  L  N  S  N  F  F  I  *  F  Y  N  *  F  *  I  *  I  Y  K  *  Y  I  K  I  H  I  Y  N  Y  N  K  F  *  I  L  N  S  M  I  G  P  Q  W  N  N  V  S  S  K  S  C  H  L  *  I  Y  I  H  W  L  T  I  L  V  N  C  F  T  K  F  S  S  L  T  L  F  I  V  Y  V  F  F  S  L  K  S  K  L  T  Y  I  F  P  F  S  S  I  L  A  I  V  Y  *   : G  R  I  *  M  K  M  V  E  E  R  E  N  K  L  D  P  Q  Q  V  I  D  E  F  E  L  L  S  K  D  A  G  K  I  Q  E  K  T  L  Q  K  I  L  E  E  N  G  R  T  E  Y  L  Q  Q  W  G  L  N  G  K  T  D  Q  V  S  F  K  N  C  V  P  L  V  T  H  K  D  L  E  P  Y  I  C  R  I  V  D  G  D  L  T  P  I  L  T  R  K  P  I  T  T  I  S  L  R :   S  *  R  T  K  S  L  M  I  I  V  E  L  Q  F  W  Y  N  S  R  K  A  K  I  C  T  F  Q  *  R  I  D  G  I  H  H  A  N  I  Q  D  F  F  C  L  *  E  Q  :  R  I  P  S  C  K  W  E  S  I  T  V  H  L  W  K  Q  T  V  Q  D  E  G  R  F  S  S  W  N  S  H  N  K  C  V  S  K  F  A  I  Q  E  D  N  E  S  N  A  D  P  M  L  *  P  *  *  S  D  I  R  P  *  F  P  S  V  L  V  L  S  S  P  V  W  S  H  F  T  *  R  S  S  S  C  L  I  Y  I  C  S  *  Y  C  P  C  F  *  T  I  R  T  S  M  A  R  T  C  C  *  H  K  G  R  S  P  F  K  S  R  K  C  P  F  Y  K  I  S  N  V  K  I  T  Q  T  *  S  R  T  G  *  Y  Y  L  *  Q  V  H  S  V  K  *  L  V  R  V  D  T  *  I  I  P  Q  H  K  V  H  I  W  Y  H  D  R  I  N  G  T  L  L  D  E  I  E  A  L  C  R  G  F  T  S  A  *  C  R  L  R  I  F  *  R  M  D  R  S  K  C  *  S  *  I  A  S  *  A  S  Y  L  C  C  T  S  *  Y  W  L  F  R  I  H  S  S  R  G  K  C  R  W  R  G  G  Y  T  S  W  F  N  *  S  *  T  R  *  R  V  *  N  C  C  H  Q  F  R  W :   F  I  S  I  Q  A  W  *  C  G  K  D  K  R  I  P  Q  S  H  S  R  A  P  I  Y  L  S  *  E  S  L  T  K  H  Q  H  R  Q  K  H  *  E  R  F  T  T  S  R  G  S  S  S  T  A  A  I  K  R  E  V  R  S  S  R  F  L  *  Q  R  K  H  N  S  *  S  R  A  L  C  N  L  L  G  T  E  W  *  G  K  *  G  N  S  E  R  M  L  *  L  F  G  Q  I  F  R  R  C  W  L  C  *  L  S  E  G  Q  N  H  R  C  P  *  A  T  D  S  E  E  R  D  I  S  *  D  F  R  S  F  C  R  T  R  S  S  S  *  P  V  Q  N  S  E  M  C  R  Y  N  E  S  L  C  A  A  N  I  D  *  *  C  C  *  E  L  F  *  Y  C  I  *  L  N  Y  M  Y  V  C  S  Q  N  C  K  L  I  T  F  H  I  L  I  I  H  S  E  F  V  Q  I  L   </second_frame>
            <third_frame>   I  P  I  *  R  G  K  I  F  S  K  F  F  C  S  Q  H  C  I  S  A  L  N  Y  T  P  M  I  *  I  R  I  F  L  S  D  F  I  I  N  F  K  Y  K  Y  I  N  N  I  S  K  F  I  F  T  I  I  I  N  F  K  F  *  I  R  *  L  A  H  S  G  T  M  L  A  L  N  H  A  I  Y  K  Y  I  Y  I  G  L  P  F  W  S  I  V  S  Q  S  F  L  L  S  L  Y  L  *  Y  M  C  F  F  H  L  N  P  S  *  H  I  Y  F  P  S  L  R  F  *  L  S  F  I  E  :  E  E  Y  K  *  R  W  W  R  K  G  R  I  S  L  I  H  N  K  *  L  M  N  L  S  Y  *  A  K  M  L  G  K  F  K  K  R  P  Y  K  R  F  L  K  K  M  E  G  Q  N  I  C  N  N  G  V  L  M  G  K  Q  I  K  F  L  S  R  I  V  F  L  L  L  H  I  R  I  W  S  L  T  F  V  E  L  L  M  V  I  L  L  L  F  S  L  E  S  L  L  L  P  S  R  *   : E  V  E  E  Q  K  V  *  *  *  L  L  N  C  S  S  G  T  T  Q  G  K  P  K  F  V  P  F  N  E  E  L  M  E  S  T  M  Q  I  F  K  T  S  F  A  F  R  N  R :   E  F  P  V  V  N  G  K  A  L  Q  F  I  Y  G  S  K  Q  F  K  T  K  G  G  L  A  A  G  T  A  T  T  N  V  Y  R  N  S  Q  F  K  K  T  M  K  A  M  Q  T  P  C  C  S  P  D  E  V  I  F  G  P  D  F  H  Q  S  L  Y  C  H  L  L  C  G  L  I  L  R  N  E  V  Q  V  V  S  S  T  F  A  H  S  I  V  H  A  F  R  Q  F  E  Q  V  W  Q  E  L  V  A  N  I  R  D  G  V  L  S  S  R  V  N  V  P  S  I  R  S  A  M  S  K  L  L  K  P  D  P  E  L  A  D  T  I  Y  N  K  C  I  R  L  S  N  W  Y  G  L  I  P  E  L  F  P  N  T  R  Y  I  Y  G  I  M  T  G  S  M  E  P  Y  L  T  K  L  R  H  Y  A  G  D  L  P  L  L  S  A  D  Y  G  S  S  E  G  W  I  G  A  N  V  N  P  E  L  P  P  E  L  V  T  Y  A  V  L  P  N  I  G  Y  F  E  F  I  P  L  V  E  N  V  D  G  V  E  A  T  P  V  G  L  T  E  V  K  L  D  E  E  Y  E  I  V  V  T  N  F  A   : G  L  Y  R  Y  R  L  G  D  V  V  K  I  K  G  F  H  N  R  T  P  E  L  Q  F  I  C  R  R  N  L  L  L  S  I  N  I  D  K  N  T  E  K  D  L  Q  L  A  V  E  A  A  A  Q  L  L  L  N  E  K  L  E  V  V  D  F  S  S  N  V  N  T  T  A  D  P  G  H  Y  V  I  F  W  E  L  N  G  E  A  S  E  E  I  L  K  E  C  C  N  C  L  D  K  S  F  V  D  A  G  Y  V  S  S  R  K  V  K  T  I  G  A  L  E  L  R  I  V  K  R  G  T  F  H  K  I  L  D  H  F  V  G  L  G  A  A  V  S  Q  F  K  T  P  R  C  V  G  T  T  N  L  S  V  L  Q  I  L  T  S  N  V  V  E  S  Y  F  S  T  A  F  S  *  I  I  C  M  F  V  P  R  I  V  S  *  L  L  F  I  S  *  *  Y  T  L  N  L  Y  K  F  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="131734" stop="131849"/>
                    <exon start="133552" stop="134339"/>
                    <exon start="134648" stop="135189"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1443</number_coding_nucleotides>
                  <number_encoded_amino_acids>481</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LLNCSSGTTQGKPKFVPFNEELMESTMQIFKTSFAFRNREFPVVNGKALQFIYGSKQFKTKGGLAAGTATTNVYRNSQFKKTMKAMQTPCCSPDEVIFGPDFHQSLYCHLLCGLILRNEVQVVSSTFAHSIVHAFRQFEQVWQELVANIRDGVLSSRVNVPSIRSAMSKLLKPDPELADTIYNKCIRLSNWYGLIPELFPNTRYIYGIMTGSMEPYLTKLRHYAGDLPLLSADYGSSEGWIGANVNPELPPELVTYAVLPNIGYFEFIPLVENVDGVEATPVGLTEVKLDEEYEIVVTNFAGLYRYRLGDVVKIKGFHNRTPELQFICRRNLLLSINIDKNTEKDLQLAVEAAAQLLLNEKLEVVDFSSNVNTTADPGHYVIFWELNGEASEEILKECCNCLDKSFVDAGYVSSRKVKTIGALELRIVKRGTFHKILDHFVGLGAAVSQFKTPRCVGTTNLSVLQILTSNVVESYFSTAFS*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129734" stop="130035"/>
                    <exon start="131705" stop="131711"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>306</number_coding_nucleotides>
                  <number_encoded_amino_acids>102</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MKMVEERENKLDPQQVIDEFELLSKDAGKIQEKTLQKILEENGRTEYLQQWGLNGKTDQVSFKNCVPLVTHKDLEPYICRIVDGDLTPILTRKPITTISLRS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="127329" e_stop="127723"/>
            <exon e_start="129723" e_stop="130035"/>
            <exon e_start="131748" e_stop="131849"/>
            <exon e_start="133552" e_stop="135278"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="0.962"/>
          <exon-intron don_prob="0.999" acc_prob="0.977" e_score="0.946"/>
          <exon-intron don_prob="1.000" acc_prob="0.956" e_score="0.980"/>
          <exon-only e_score="0.998"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="127329" e_stop="127723" e_length="395"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="127724" i_stop="129722" i_length="1999"/>
          </intron>
          <exon e_serial="2" e_score="0.946">
            <gDNA_exon_boundary e_start="129723" e_stop="130035" e_length="313"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.977">
            <gDNA_intron_boundary i_start="130036" i_stop="131747" i_length="1712"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="131748" e_stop="131849" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.956">
            <gDNA_intron_boundary i_start="131850" i_stop="133551" i_length="1702"/>
          </intron>
          <exon e_serial="4" e_score="0.998">
            <gDNA_exon_boundary e_start="133552" e_stop="135278" e_length="1727"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127329" stop="127723"/>
              <exon start="129723" stop="129921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127329" stop="127723"/>
              <exon start="129723" stop="129901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127329" stop="127723"/>
              <exon start="129723" stop="129887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127651" stop="127723"/>
              <exon start="129723" stop="130035"/>
              <exon start="131748" stop="131849"/>
              <exon start="133552" stop="133856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129931" stop="130035"/>
              <exon start="131748" stop="131849"/>
              <exon start="133552" stop="133847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131808" stop="131849"/>
              <exon start="133552" stop="134182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131808" stop="131849"/>
              <exon start="133552" stop="134034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133948" stop="134768"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E701645" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134570" stop="135278"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369258" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134917" stop="135274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134953" stop="135256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369810" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATTCCCATTTAAAGGGGAAAAATATTCTCAAAATTTTTCTGTTCACAACACTGCATTTCTGCCTTAAACTATACCCCAATGATTTGAATTCGAATTTTTTTATCTGATTTTATAATTAATTTTAAATATAAATATATAAATAATATATCAAAATTCATATTTACAATTATAATAAATTTTAAATTCTAAATTCGATGATTGGCCCACAGTGGAACAATGTTAGCTCTAAATCATGCCATCTATAAATATATATACATTGGCTTACCATTTTGGTCAATTGTTTCACAAAGTTTTCTTCTCTCACTTTATTTATAGTATATGTGTTTTTTTCACTTAAATCCAAGCTGACATATATATTTCCCTTCTCTTCGATTCTAGCTATCGTTTATTGAG : GAAGAATATAAATGAAGATGGTGGAGGAAAGGGAGAATAAGCTTGATCCACAACAAGTGATTGATGAATTTGAGCTATTAAGCAAAGATGCTGGGAAAATTCAAGAAAAGACCTTACAAAAGATTCTTGAAGAAAATGGAAGGACAGAATATTTGCAACAATGGGGTCTTAATGGGAAAACAGATCAAGTTTCTTTCAAGAATTGTGTTCCTCTTGTTACACATAAGGATTTGGAGCCTTACATTTGTAGAATTGTTGATGGTGATCTTACTCCTATTCTCACTAGAAAGCCTATTACTACCATCTCGTTGAG : TTCTGGTACAACTCAAGGAAAGCCAAAATTTGTACCTTTCAATGAAGAATTGATGGAATCCACCATGCAAATATTCAAGACTTCTTTTGCCTTTAGGAACAG : AGAATTCCCAGTTGTAAATGGGAAAGCATTACAGTTCATTTATGGAAGCAAACAGTTCAAGACGAAGGGAGGTTTAGCAGCTGGAACAGCCACAACAAATGTGTATCGAAATTCGCAATTCAAGAAGACAATGAAAGCAATGCAGACCCCATGTTGTAGCCCTGATGAAGTGATATTCGGCCCTGATTTCCATCAGTCCTTGTACTGTCATCTCCTGTGTGGTCTCATTTTACGTAACGAAGTTCAAGTTGTCTCATCTACATTTGCTCATAGTATTGTCCATGCTTTTAGACAATTCGAACAAGTATGGCAAGAACTTGTTGCTAACATAAGGGACGGAGTCCTTTCAAGTCGCGTAAATGTCCCTTCTATAAGATCAGCAATGTCAAAATTACTCAAACCTGATCCAGAACTGGCTGATACTATTTATAACAAGTGCATTCGGTTAAGTAATTGGTACGGGTTGATACCTGAATTATTCCCCAACACAAGGTACATATATGGTATCATGACCGGATCAATGGAACCTTACTTGACGAAATTGAGGCATTATGCAGGGGATTTACCTCTGCTTAGTGCAGATTACGGATCTTCTGAAGGATGGATCGGAGCAAATGTTAATCCTGAATTGCCTCCTGAGCTAGTTACTTATGCTGTACTTCCTAATATTGGTTATTTCGAATTCATTCCTCTCGTGGAAAATGTAGATGGCGTGGAGGCTACACCAGTTGGTTTAACTGAAGTTAAACTCGATGAAGAGTATGAAATTGTTGTCACCAATTTCGCTGGTATGATTTTGTTCTTCCCTTCCTTGGAAATACTTTTCATAGTATTGCTCCTGTAGTTTCTTTGTCCTTCAATTTTTATTGCTTTCTGTTATTTGTTATACTTCGATTGTCATATATTTACTGCTTTTGTTATGCTTTAACTTCCGTTACTCCTTTTTTGGACTGTTTGTTTCTTGAGTTGAGGGTCTATTACAACCTCTCTACCTCTGGATAAGGTCTGCATACACTCTATCCTCCTCAGATCCCATTTGGGACCTTATGTTGTTATTCGTTTTGACTTGATTGAATATATACCGTGTAAGATGCAGGTTTATATCGATACAGGCTTGGTGATGTGGTAAAGATAAAAGGATTCCACAATCGCACTCCCGAGCTCCAATTTATTTGTCGTAGGAATCTCTTACTAAGCATCAACATCGACAAAAACACTGAGAAAGATTTACAACTAGCCGTGGAAGCAGCAGCACAGCTGCTATTAAACGAGAAGTTAGAAGTAGTCGATTTCTCTAGCAACGTAAACACAACAGCTGATCCAGGGCACTATGTAATCTTCTGGGAACTGAATGGTGAGGCAAGTGAGGAAATTCTGAAAGAATGTTGTAATTGTTTGGACAAATCTTTCGTCGATGCTGGCTATGTTAGCTCTCGGAAGGTCAAAACCATCGGTGCCCTTGAGCTACGGATAGTGAAGAGAGGGACATTTCATAAGATTTTAGATCATTTTGTAGGACTAGGAGCAGCAGTTAGCCAGTTCAAAACTCCGAGATGTGTCGGTACAACGAATCTCTCTGTGCTGCAAATATTGACTAGTAATGTTGTTGAGAGCTATTTTAGTACTGCATTTAGTTGAATTATATGTATGTTTGTTCCCAGAATTGTAAGCTGATTACTTTTCATATCTTAATAATACACTCTGAATTTGTACAAATTTTGTAGGAC</gDNA_template>
            <first_frame> *  F  P  F  K  G  E  K  Y  S  Q  N  F  S  V  H  N  T  A  F  L  P  *  T  I  P  Q  *  F  E  F  E  F  F  Y  L  I  L  *  L  I  L  N  I  N  I  *  I  I  Y  Q  N  S  Y  L  Q  L  *  *  I  L  N  S  K  F  D  D  W  P  T  V  E  Q  C  *  L  *  I  M  P  S  I  N  I  Y  T  L  A  Y  H  F  G  Q  L  F  H  K  V  F  F  S  H  F  I  Y  S  I  C  V  F  F  T  *  I  Q  A  D  I  Y  I  S  L  L  F  D  S  S  Y  R  L  L  R :   K  N  I  N  E  D  G  G  G  K  G  E  *  A  *  S  T  T  S  D  *  *  I  *  A  I  K  Q  R  C  W  E  N  S  R  K  D  L  T  K  D  S  *  R  K  W  K  D  R  I  F  A  T  M  G  S  *  W  E  N  R  S  S  F  F  Q  E  L  C  S  S  C  Y  T  *  G  F  G  A  L  H  L  *  N  C  *  W  *  S  Y  S  Y  S  H  *  K  A  Y  Y  Y  H  L  V  E  :  F  W  Y  N  S  R  K  A  K  I  C  T  F  Q  *  R  I  D  G  I  H  H  A  N  I  Q  D  F  F  C  L  *  E  Q  :  R  I  P  S  C  K  W  E  S  I  T  V  H  L  W  K  Q  T  V  Q  D  E  G  R  F  S  S  W  N  S  H  N  K  C  V  S  K  F  A  I  Q  E  D  N  E  S  N  A  D  P  M  L  *  P  *  *  S  D  I  R  P  *  F  P  S  V  L  V  L  S  S  P  V  W  S  H  F  T  *  R  S  S  S  C  L  I  Y  I  C  S  *  Y  C  P  C  F  *  T  I  R  T  S  M  A  R  T  C  C  *  H  K  G  R  S  P  F  K  S  R  K  C  P  F  Y  K  I  S  N  V  K  I  T  Q  T  *  S  R  T  G  *  Y  Y  L  *  Q  V  H  S  V  K  *  L  V  R  V  D  T  *  I  I  P  Q  H  K  V  H  I  W  Y  H  D  R  I  N  G  T  L  L  D  E  I  E  A  L  C  R  G  F  T  S  A  *  C  R  L  R  I  F  *  R  M  D  R  S  K  C  *  S  *  I  A  S  *  A  S  Y  L  C  C  T  S  *  Y  W  L  F  R  I  H  S  S  R  G  K  C  R  W  R  G  G  Y  T  S  W  F  N  *  S  *  T  R  *  R  V  *  N  C  C  H  Q  F  R  W  Y  D  F  V  L  P  F  L  G  N  T  F  H  S  I  A  P  V  V  S  L  S  F  N  F  Y  C  F  L  L  F  V  I  L  R  L  S  Y  I  Y  C  F  C  Y  A  L  T  S  V  T  P  F  L  D  C  L  F  L  E  L  R  V  Y  Y  N  L  S  T  S  G  *  G  L  H  T  L  Y  P  P  Q  I  P  F  G  T  L  C  C  Y  S  F  *  L  D  *  I  Y  T  V  *  D  A  G  L  Y  R  Y  R  L  G  D  V  V  K  I  K  G  F  H  N  R  T  P  E  L  Q  F  I  C  R  R  N  L  L  L  S  I  N  I  D  K  N  T  E  K  D  L  Q  L  A  V  E  A  A  A  Q  L  L  L  N  E  K  L  E  V  V  D  F  S  S  N  V  N  T  T  A  D  P  G  H  Y  V  I  F  W  E  L  N  G  E  A  S  E  E  I  L  K  E  C  C  N  C  L  D  K  S  F  V  D  A  G  Y  V  S  S  R  K  V  K  T  I  G  A  L  E  L  R  I  V  K  R  G  T  F  H  K  I  L  D  H  F  V  G  L  G  A  A  V  S  Q  F  K  T  P  R  C  V  G  T  T  N  L  S  V  L  Q  I  L  T  S  N  V  V  E  S  Y  F  S  T  A  F  S  *  I  I  C  M  F  V  P  R  I  V  S  *  L  L  F  I  S  *  *  Y  T  L  N  L  Y  K  F  C  R   </first_frame>
            <second_frame>  N  S  H  L  K  G  K  N  I  L  K  I  F  L  F  T  T  L  H  F  C  L  K  L  Y  P  N  D  L  N  S  N  F  F  I  *  F  Y  N  *  F  *  I  *  I  Y  K  *  Y  I  K  I  H  I  Y  N  Y  N  K  F  *  I  L  N  S  M  I  G  P  Q  W  N  N  V  S  S  K  S  C  H  L  *  I  Y  I  H  W  L  T  I  L  V  N  C  F  T  K  F  S  S  L  T  L  F  I  V  Y  V  F  F  S  L  K  S  K  L  T  Y  I  F  P  F  S  S  I  L  A  I  V  Y  *   : G  R  I  *  M  K  M  V  E  E  R  E  N  K  L  D  P  Q  Q  V  I  D  E  F  E  L  L  S  K  D  A  G  K  I  Q  E  K  T  L  Q  K  I  L  E  E  N  G  R  T  E  Y  L  Q  Q  W  G  L  N  G  K  T  D  Q  V  S  F  K  N  C  V  P  L  V  T  H  K  D  L  E  P  Y  I  C  R  I  V  D  G  D  L  T  P  I  L  T  R  K  P  I  T  T  I  S  L  S :   S  G  T  T  Q  G  K  P  K  F  V  P  F  N  E  E  L  M  E  S  T  M  Q  I  F  K  T  S  F  A  F  R  N  R :   E  F  P  V  V  N  G  K  A  L  Q  F  I  Y  G  S  K  Q  F  K  T  K  G  G  L  A  A  G  T  A  T  T  N  V  Y  R  N  S  Q  F  K  K  T  M  K  A  M  Q  T  P  C  C  S  P  D  E  V  I  F  G  P  D  F  H  Q  S  L  Y  C  H  L  L  C  G  L  I  L  R  N  E  V  Q  V  V  S  S  T  F  A  H  S  I  V  H  A  F  R  Q  F  E  Q  V  W  Q  E  L  V  A  N  I  R  D  G  V  L  S  S  R  V  N  V  P  S  I  R  S  A  M  S  K  L  L  K  P  D  P  E  L  A  D  T  I  Y  N  K  C  I  R  L  S  N  W  Y  G  L  I  P  E  L  F  P  N  T  R  Y  I  Y  G  I  M  T  G  S  M  E  P  Y  L  T  K  L  R  H  Y  A  G  D  L  P  L  L  S  A  D  Y  G  S  S  E  G  W  I  G  A  N  V  N  P  E  L  P  P  E  L  V  T  Y  A  V  L  P  N  I  G  Y  F  E  F  I  P  L  V  E  N  V  D  G  V  E  A  T  P  V  G  L  T  E  V  K  L  D  E  E  Y  E  I  V  V  T  N  F  A  G  M  I  L  F  F  P  S  L  E  I  L  F  I  V  L  L  L  *  F  L  C  P  S  I  F  I  A  F  C  Y  L  L  Y  F  D  C  H  I  F  T  A  F  V  M  L  *  L  P  L  L  L  F  W  T  V  C  F  L  S  *  G  S  I  T  T  S  L  P  L  D  K  V  C  I  H  S  I  L  L  R  S  H  L  G  P  Y  V  V  I  R  F  D  L  I  E  Y  I  P  C  K  M  Q  V  Y  I  D  T  G  L  V  M  W  *  R  *  K  D  S  T  I  A  L  P  S  S  N  L  F  V  V  G  I  S  Y  *  A  S  T  S  T  K  T  L  R  K  I  Y  N  *  P  W  K  Q  Q  H  S  C  Y  *  T  R  S  *  K  *  S  I  S  L  A  T  *  T  Q  Q  L  I  Q  G  T  M  *  S  S  G  N  *  M  V  R  Q  V  R  K  F  *  K  N  V  V  I  V  W  T  N  L  S  S  M  L  A  M  L  A  L  G  R  S  K  P  S  V  P  L  S  Y  G  *  *  R  E  G  H  F  I  R  F  *  I  I  L  *  D  *  E  Q  Q  L  A  S  S  K  L  R  D  V  S  V  Q  R  I  S  L  C  C  K  Y  *  L  V  M  L  L  R  A  I  L  V  L  H  L  V  E  L  Y  V  C  L  F  P  E  L  *  A  D  Y  F  S  Y  L  N  N  T  L  *  I  C  T  N  F  V  G  </second_frame>
            <third_frame>   I  P  I  *  R  G  K  I  F  S  K  F  F  C  S  Q  H  C  I  S  A  L  N  Y  T  P  M  I  *  I  R  I  F  L  S  D  F  I  I  N  F  K  Y  K  Y  I  N  N  I  S  K  F  I  F  T  I  I  I  N  F  K  F  *  I  R  *  L  A  H  S  G  T  M  L  A  L  N  H  A  I  Y  K  Y  I  Y  I  G  L  P  F  W  S  I  V  S  Q  S  F  L  L  S  L  Y  L  *  Y  M  C  F  F  H  L  N  P  S  *  H  I  Y  F  P  S  L  R  F  *  L  S  F  I  E  :  E  E  Y  K  *  R  W  W  R  K  G  R  I  S  L  I  H  N  K  *  L  M  N  L  S  Y  *  A  K  M  L  G  K  F  K  K  R  P  Y  K  R  F  L  K  K  M  E  G  Q  N  I  C  N  N  G  V  L  M  G  K  Q  I  K  F  L  S  R  I  V  F  L  L  L  H  I  R  I  W  S  L  T  F  V  E  L  L  M  V  I  L  L  L  F  S  L  E  S  L  L  L  P  S  R  *   : V  L  V  Q  L  K  E  S  Q  N  L  Y  L  S  M  K  N  *  W  N  P  P  C  K  Y  S  R  L  L  L  P  L  G  T   : E  N  S  Q  L  *  M  G  K  H  Y  S  S  F  M  E  A  N  S  S  R  R  R  E  V  *  Q  L  E  Q  P  Q  Q  M  C  I  E  I  R  N  S  R  R  Q  *  K  Q  C  R  P  H  V  V  A  L  M  K  *  Y  S  A  L  I  S  I  S  P  C  T  V  I  S  C  V  V  S  F  Y  V  T  K  F  K  L  S  H  L  H  L  L  I  V  L  S  M  L  L  D  N  S  N  K  Y  G  K  N  L  L  L  T  *  G  T  E  S  F  Q  V  A  *  M  S  L  L  *  D  Q  Q  C  Q  N  Y  S  N  L  I  Q  N  W  L  I  L  F  I  T  S  A  F  G  *  V  I  G  T  G  *  Y  L  N  Y  S  P  T  Q  G  T  Y  M  V  S  *  P  D  Q  W  N  L  T  *  R  N  *  G  I  M  Q  G  I  Y  L  C  L  V  Q  I  T  D  L  L  K  D  G  S  E  Q  M  L  I  L  N  C  L  L  S  *  L  L  M  L  Y  F  L  I  L  V  I  S  N  S  F  L  S  W  K  M  *  M  A  W  R  L  H  Q  L  V  *  L  K  L  N  S  M  K  S  M  K  L  L  S  P  I  S  L  V  *  F  C  S  S  L  P  W  K  Y  F  S  *  Y  C  S  C  S  F  F  V  L  Q  F  L  L  L  S  V  I  C  Y  T  S  I  V  I  Y  L  L  L  L  L  C  F  N  F  R  Y  S  F  F  G  L  F  V  S  *  V  E  G  L  L  Q  P  L  Y  L  W  I  R  S  A  Y  T  L  S  S  S  D  P  I  W  D  L  M  L  L  F  V  L  T  *  L  N  I  Y  R  V  R  C  R  F  I  S  I  Q  A  W  *  C  G  K  D  K  R  I  P  Q  S  H  S  R  A  P  I  Y  L  S  *  E  S  L  T  K  H  Q  H  R  Q  K  H  *  E  R  F  T  T  S  R  G  S  S  S  T  A  A  I  K  R  E  V  R  S  S  R  F  L  *  Q  R  K  H  N  S  *  S  R  A  L  C  N  L  L  G  T  E  W  *  G  K  *  G  N  S  E  R  M  L  *  L  F  G  Q  I  F  R  R  C  W  L  C  *  L  S  E  G  Q  N  H  R  C  P  *  A  T  D  S  E  E  R  D  I  S  *  D  F  R  S  F  C  R  T  R  S  S  S  *  P  V  Q  N  S  E  M  C  R  Y  N  E  S  L  C  A  A  N  I  D  *  *  C  C  *  E  L  F  *  Y  C  I  *  L  N  Y  M  Y  V  C  S  Q  N  C  K  L  I  T  F  H  I  L  I  I  H  S  E  F  V  Q  I  L  *  D </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129734" stop="130035"/>
                    <exon start="131748" stop="131849"/>
                    <exon start="133552" stop="134395"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1245</number_coding_nucleotides>
                  <number_encoded_amino_acids>415</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MKMVEERENKLDPQQVIDEFELLSKDAGKIQEKTLQKILEENGRTEYLQQWGLNGKTDQVSFKNCVPLVTHKDLEPYICRIVDGDLTPILTRKPITTISLSSGTTQGKPKFVPFNEELMESTMQIFKTSFAFRNREFPVVNGKALQFIYGSKQFKTKGGLAAGTATTNVYRNSQFKKTMKAMQTPCCSPDEVIFGPDFHQSLYCHLLCGLILRNEVQVVSSTFAHSIVHAFRQFEQVWQELVANIRDGVLSSRVNVPSIRSAMSKLLKPDPELADTIYNKCIRLSNWYGLIPELFPNTRYIYGIMTGSMEPYLTKLRHYAGDLPLLSADYGSSEGWIGANVNPELPPELVTYAVLPNIGYFEFIPLVENVDGVEATPVGLTEVKLDEEYEIVVTNFAGMILFFPSLEILFIVLLL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134641" stop="135189"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>546</number_coding_nucleotides>
                  <number_encoded_amino_acids>182</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DAGLYRYRLGDVVKIKGFHNRTPELQFICRRNLLLSINIDKNTEKDLQLAVEAAAQLLLNEKLEVVDFSSNVNTTADPGHYVIFWELNGEASEEILKECCNCLDKSFVDAGYVSSRKVKTIGALELRIVKRGTFHKILDHFVGLGAAVSQFKTPRCVGTTNLSVLQILTSNVVESYFSTAFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="127638" e_stop="127723"/>
            <exon e_start="129689" e_stop="130035"/>
            <exon e_start="131748" e_stop="131849"/>
            <exon e_start="133552" e_stop="134339"/>
            <exon e_start="134648" e_stop="135274"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.165" e_score="0.895"/>
          <exon-intron don_prob="0.999" acc_prob="0.977" e_score="0.942"/>
          <exon-intron don_prob="1.000" acc_prob="0.956" e_score="0.971"/>
          <exon-intron don_prob="0.999" acc_prob="0.976" e_score="0.995"/>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.895">
            <gDNA_exon_boundary e_start="127638" e_stop="127723" e_length="86"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.165">
            <gDNA_intron_boundary i_start="127724" i_stop="129688" i_length="1965"/>
          </intron>
          <exon e_serial="2" e_score="0.942">
            <gDNA_exon_boundary e_start="129689" e_stop="130035" e_length="347"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.977">
            <gDNA_intron_boundary i_start="130036" i_stop="131747" i_length="1712"/>
          </intron>
          <exon e_serial="3" e_score="0.971">
            <gDNA_exon_boundary e_start="131748" e_stop="131849" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.956">
            <gDNA_intron_boundary i_start="131850" i_stop="133551" i_length="1702"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="133552" e_stop="134339" e_length="788"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.976">
            <gDNA_intron_boundary i_start="134340" i_stop="134647" i_length="308"/>
          </intron>
          <exon e_serial="5" e_score="0.948">
            <gDNA_exon_boundary e_start="134648" e_stop="135274" e_length="627"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127638" stop="127723"/>
              <exon start="129689" stop="130035"/>
              <exon start="131748" stop="131849"/>
              <exon start="133552" stop="133608"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E467585" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129931" stop="130035"/>
              <exon start="131748" stop="131849"/>
              <exon start="133552" stop="133847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131808" stop="131849"/>
              <exon start="133552" stop="134182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131808" stop="131849"/>
              <exon start="133552" stop="134034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134015" stop="134339"/>
              <exon start="134648" stop="134801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134186" stop="134339"/>
              <exon start="134648" stop="134987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134188" stop="134339"/>
              <exon start="134648" stop="135083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134249" stop="134339"/>
              <exon start="134648" stop="135260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432100" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134917" stop="135274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134953" stop="135256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369810" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATTTATAGTATATGTGTTTTTTTCACTTAAATCCAAGCTGACATATATATTTCCCTTCTCTTCGATTCTAGCTATCGTTTATTGAG : AAAATAACTTTAAATCTTGATTCCGTCAATACAGGAAGAATATAAATGAAGATGGTGGAGGAAAGGGAGAATAAGCTTGATCCACAACAAGTGATTGATGAATTTGAGCTATTAAGCAAAGATGCTGGGAAAATTCAAGAAAAGACCTTACAAAAGATTCTTGAAGAAAATGGAAGGACAGAATATTTGCAACAATGGGGTCTTAATGGGAAAACAGATCAAGTTTCTTTCAAGAATTGTGTTCCTCTTGTTACACATAAGGATTTGGAGCCTTACATTTGTAGAATTGTTGATGGTGATCTTACTCCTATTCTCACTAGAAAGCCTATTACTACCATCTCGTTGAG : TTCTGGTACAACTCAAGGAAAGCCAAAATTTGTACCTTTCAATGAAGAATTGATGGAATCCACCATGCAAATATTCAAGACTTCTTTTGCCTTTAGGAACAG : AGAATTCCCAGTTGTAAATGGGAAAGCATTACAGTTCATTTATGGAAGCAAACAGTTCAAGACGAAGGGAGGTTTAGCAGCTGGAACAGCCACAACAAATGTGTATCGAAATTCGCAATTCAAGAAGACAATGAAAGCAATGCAGACCCCATGTTGTAGCCCTGATGAAGTGATATTCGGCCCTGATTTCCATCAGTCCTTGTACTGTCATCTCCTGTGTGGTCTCATTTTACGTAACGAAGTTCAAGTTGTCTCATCTACATTTGCTCATAGTATTGTCCATGCTTTTAGACAATTCGAACAAGTATGGCAAGAACTTGTTGCTAACATAAGGGACGGAGTCCTTTCAAGTCGCGTAAATGTCCCTTCTATAAGATCAGCAATGTCAAAATTACTCAAACCTGATCCAGAACTGGCTGATACTATTTATAACAAGTGCATTCGGTTAAGTAATTGGTACGGGTTGATACCTGAATTATTCCCCAACACAAGGTACATATATGGTATCATGACCGGATCAATGGAACCTTACTTGACGAAATTGAGGCATTATGCAGGGGATTTACCTCTGCTTAGTGCAGATTACGGATCTTCTGAAGGATGGATCGGAGCAAATGTTAATCCTGAATTGCCTCCTGAGCTAGTTACTTATGCTGTACTTCCTAATATTGGTTATTTCGAATTCATTCCTCTCGTGGAAAATGTAGATGGCGTGGAGGCTACACCAGTTGGTTTAACTGAAGTTAAACTCGATGAAGAGTATGAAATTGTTGTCACCAATTTCGCTG : GTTTATATCGATACAGGCTTGGTGATGTGGTAAAGATAAAAGGATTCCACAATCGCACTCCCGAGCTCCAATTTATTTGTCGTAGGAATCTCTTACTAAGCATCAACATCGACAAAAACACTGAGAAAGATTTACAACTAGCCGTGGAAGCAGCAGCACAGCTGCTATTAAACGAGAAGTTAGAAGTAGTCGATTTCTCTAGCAACGTAAACACAACAGCTGATCCAGGGCACTATGTAATCTTCTGGGAACTGAATGGTGAGGCAAGTGAGGAAATTCTGAAAGAATGTTGTAATTGTTTGGACAAATCTTTCGTCGATGCTGGCTATGTTAGCTCTCGGAAGGTCAAAACCATCGGTGCCCTTGAGCTACGGATAGTGAAGAGAGGGACATTTCATAAGATTTTAGATCATTTTGTAGGACTAGGAGCAGCAGTTAGCCAGTTCAAAACTCCGAGATGTGTCGGTACAACGAATCTCTCTGTGCTGCAAATATTGACTAGTAATGTTGTTGAGAGCTATTTTAGTACTGCATTTAGTTGAATTATATGTATGTTTGTTCCCAGAATTGTAAGCTGATTACTTTTCATATCTTAATAATACACTCTGAATTTGTACAAATTTTGTA</gDNA_template>
            <first_frame> I  Y  S  I  C  V  F  F  T  *  I  Q  A  D  I  Y  I  S  L  L  F  D  S  S  Y  R  L  L  R :   K  *  L  *  I  L  I  P  S  I  Q  E  E  Y  K  *  R  W  W  R  K  G  R  I  S  L  I  H  N  K  *  L  M  N  L  S  Y  *  A  K  M  L  G  K  F  K  K  R  P  Y  K  R  F  L  K  K  M  E  G  Q  N  I  C  N  N  G  V  L  M  G  K  Q  I  K  F  L  S  R  I  V  F  L  L  L  H  I  R  I  W  S  L  T  F  V  E  L  L  M  V  I  L  L  L  F  S  L  E  S  L  L  L  P  S  R  *   : V  L  V  Q  L  K  E  S  Q  N  L  Y  L  S  M  K  N  *  W  N  P  P  C  K  Y  S  R  L  L  L  P  L  G  T   : E  N  S  Q  L  *  M  G  K  H  Y  S  S  F  M  E  A  N  S  S  R  R  R  E  V  *  Q  L  E  Q  P  Q  Q  M  C  I  E  I  R  N  S  R  R  Q  *  K  Q  C  R  P  H  V  V  A  L  M  K  *  Y  S  A  L  I  S  I  S  P  C  T  V  I  S  C  V  V  S  F  Y  V  T  K  F  K  L  S  H  L  H  L  L  I  V  L  S  M  L  L  D  N  S  N  K  Y  G  K  N  L  L  L  T  *  G  T  E  S  F  Q  V  A  *  M  S  L  L  *  D  Q  Q  C  Q  N  Y  S  N  L  I  Q  N  W  L  I  L  F  I  T  S  A  F  G  *  V  I  G  T  G  *  Y  L  N  Y  S  P  T  Q  G  T  Y  M  V  S  *  P  D  Q  W  N  L  T  *  R  N  *  G  I  M  Q  G  I  Y  L  C  L  V  Q  I  T  D  L  L  K  D  G  S  E  Q  M  L  I  L  N  C  L  L  S  *  L  L  M  L  Y  F  L  I  L  V  I  S  N  S  F  L  S  W  K  M  *  M  A  W  R  L  H  Q  L  V  *  L  K  L  N  S  M  K  S  M  K  L  L  S  P  I  S  L  :  V  Y  I  D  T  G  L  V  M  W  *  R  *  K  D  S  T  I  A  L  P  S  S  N  L  F  V  V  G  I  S  Y  *  A  S  T  S  T  K  T  L  R  K  I  Y  N  *  P  W  K  Q  Q  H  S  C  Y  *  T  R  S  *  K  *  S  I  S  L  A  T  *  T  Q  Q  L  I  Q  G  T  M  *  S  S  G  N  *  M  V  R  Q  V  R  K  F  *  K  N  V  V  I  V  W  T  N  L  S  S  M  L  A  M  L  A  L  G  R  S  K  P  S  V  P  L  S  Y  G  *  *  R  E  G  H  F  I  R  F  *  I  I  L  *  D  *  E  Q  Q  L  A  S  S  K  L  R  D  V  S  V  Q  R  I  S  L  C  C  K  Y  *  L  V  M  L  L  R  A  I  L  V  L  H  L  V  E  L  Y  V  C  L  F  P  E  L  *  A  D  Y  F  S  Y  L  N  N  T  L  *  I  C  T  N  F  V </first_frame>
            <second_frame>  F  I  V  Y  V  F  F  S  L  K  S  K  L  T  Y  I  F  P  F  S  S  I  L  A  I  V  Y  *   : E  N  N  F  K  S  *  F  R  Q  Y  R  K  N  I  N  E  D  G  G  G  K  G  E  *  A  *  S  T  T  S  D  *  *  I  *  A  I  K  Q  R  C  W  E  N  S  R  K  D  L  T  K  D  S  *  R  K  W  K  D  R  I  F  A  T  M  G  S  *  W  E  N  R  S  S  F  F  Q  E  L  C  S  S  C  Y  T  *  G  F  G  A  L  H  L  *  N  C  *  W  *  S  Y  S  Y  S  H  *  K  A  Y  Y  Y  H  L  V  E  :  F  W  Y  N  S  R  K  A  K  I  C  T  F  Q  *  R  I  D  G  I  H  H  A  N  I  Q  D  F  F  C  L  *  E  Q  :  R  I  P  S  C  K  W  E  S  I  T  V  H  L  W  K  Q  T  V  Q  D  E  G  R  F  S  S  W  N  S  H  N  K  C  V  S  K  F  A  I  Q  E  D  N  E  S  N  A  D  P  M  L  *  P  *  *  S  D  I  R  P  *  F  P  S  V  L  V  L  S  S  P  V  W  S  H  F  T  *  R  S  S  S  C  L  I  Y  I  C  S  *  Y  C  P  C  F  *  T  I  R  T  S  M  A  R  T  C  C  *  H  K  G  R  S  P  F  K  S  R  K  C  P  F  Y  K  I  S  N  V  K  I  T  Q  T  *  S  R  T  G  *  Y  Y  L  *  Q  V  H  S  V  K  *  L  V  R  V  D  T  *  I  I  P  Q  H  K  V  H  I  W  Y  H  D  R  I  N  G  T  L  L  D  E  I  E  A  L  C  R  G  F  T  S  A  *  C  R  L  R  I  F  *  R  M  D  R  S  K  C  *  S  *  I  A  S  *  A  S  Y  L  C  C  T  S  *  Y  W  L  F  R  I  H  S  S  R  G  K  C  R  W  R  G  G  Y  T  S  W  F  N  *  S  *  T  R  *  R  V  *  N  C  C  H  Q  F  R  W :   F  I  S  I  Q  A  W  *  C  G  K  D  K  R  I  P  Q  S  H  S  R  A  P  I  Y  L  S  *  E  S  L  T  K  H  Q  H  R  Q  K  H  *  E  R  F  T  T  S  R  G  S  S  S  T  A  A  I  K  R  E  V  R  S  S  R  F  L  *  Q  R  K  H  N  S  *  S  R  A  L  C  N  L  L  G  T  E  W  *  G  K  *  G  N  S  E  R  M  L  *  L  F  G  Q  I  F  R  R  C  W  L  C  *  L  S  E  G  Q  N  H  R  C  P  *  A  T  D  S  E  E  R  D  I  S  *  D  F  R  S  F  C  R  T  R  S  S  S  *  P  V  Q  N  S  E  M  C  R  Y  N  E  S  L  C  A  A  N  I  D  *  *  C  C  *  E  L  F  *  Y  C  I  *  L  N  Y  M  Y  V  C  S  Q  N  C  K  L  I  T  F  H  I  L  I  I  H  S  E  F  V  Q  I  L   </second_frame>
            <third_frame>   L  *  Y  M  C  F  F  H  L  N  P  S  *  H  I  Y  F  P  S  L  R  F  *  L  S  F  I  E  :  K  I  T  L  N  L  D  S  V  N  T  G  R  I  *  M  K  M  V  E  E  R  E  N  K  L  D  P  Q  Q  V  I  D  E  F  E  L  L  S  K  D  A  G  K  I  Q  E  K  T  L  Q  K  I  L  E  E  N  G  R  T  E  Y  L  Q  Q  W  G  L  N  G  K  T  D  Q  V  S  F  K  N  C  V  P  L  V  T  H  K  D  L  E  P  Y  I  C  R  I  V  D  G  D  L  T  P  I  L  T  R  K  P  I  T  T  I  S  L  S :   S  G  T  T  Q  G  K  P  K  F  V  P  F  N  E  E  L  M  E  S  T  M  Q  I  F  K  T  S  F  A  F  R  N  R :   E  F  P  V  V  N  G  K  A  L  Q  F  I  Y  G  S  K  Q  F  K  T  K  G  G  L  A  A  G  T  A  T  T  N  V  Y  R  N  S  Q  F  K  K  T  M  K  A  M  Q  T  P  C  C  S  P  D  E  V  I  F  G  P  D  F  H  Q  S  L  Y  C  H  L  L  C  G  L  I  L  R  N  E  V  Q  V  V  S  S  T  F  A  H  S  I  V  H  A  F  R  Q  F  E  Q  V  W  Q  E  L  V  A  N  I  R  D  G  V  L  S  S  R  V  N  V  P  S  I  R  S  A  M  S  K  L  L  K  P  D  P  E  L  A  D  T  I  Y  N  K  C  I  R  L  S  N  W  Y  G  L  I  P  E  L  F  P  N  T  R  Y  I  Y  G  I  M  T  G  S  M  E  P  Y  L  T  K  L  R  H  Y  A  G  D  L  P  L  L  S  A  D  Y  G  S  S  E  G  W  I  G  A  N  V  N  P  E  L  P  P  E  L  V  T  Y  A  V  L  P  N  I  G  Y  F  E  F  I  P  L  V  E  N  V  D  G  V  E  A  T  P  V  G  L  T  E  V  K  L  D  E  E  Y  E  I  V  V  T  N  F  A   : G  L  Y  R  Y  R  L  G  D  V  V  K  I  K  G  F  H  N  R  T  P  E  L  Q  F  I  C  R  R  N  L  L  L  S  I  N  I  D  K  N  T  E  K  D  L  Q  L  A  V  E  A  A  A  Q  L  L  L  N  E  K  L  E  V  V  D  F  S  S  N  V  N  T  T  A  D  P  G  H  Y  V  I  F  W  E  L  N  G  E  A  S  E  E  I  L  K  E  C  C  N  C  L  D  K  S  F  V  D  A  G  Y  V  S  S  R  K  V  K  T  I  G  A  L  E  L  R  I  V  K  R  G  T  F  H  K  I  L  D  H  F  V  G  L  G  A  A  V  S  Q  F  K  T  P  R  C  V  G  T  T  N  L  S  V  L  Q  I  L  T  S  N  V  V  E  S  Y  F  S  T  A  F  S  *  I  I  C  M  F  V  P  R  I  V  S  *  L  L  F  I  S  *  *  Y  T  L  N  L  Y  K  F  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129734" stop="130035"/>
                    <exon start="131748" stop="131849"/>
                    <exon start="133552" stop="134339"/>
                    <exon start="134648" stop="135189"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1731</number_coding_nucleotides>
                  <number_encoded_amino_acids>577</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MKMVEERENKLDPQQVIDEFELLSKDAGKIQEKTLQKILEENGRTEYLQQWGLNGKTDQVSFKNCVPLVTHKDLEPYICRIVDGDLTPILTRKPITTISLSSGTTQGKPKFVPFNEELMESTMQIFKTSFAFRNREFPVVNGKALQFIYGSKQFKTKGGLAAGTATTNVYRNSQFKKTMKAMQTPCCSPDEVIFGPDFHQSLYCHLLCGLILRNEVQVVSSTFAHSIVHAFRQFEQVWQELVANIRDGVLSSRVNVPSIRSAMSKLLKPDPELADTIYNKCIRLSNWYGLIPELFPNTRYIYGIMTGSMEPYLTKLRHYAGDLPLLSADYGSSEGWIGANVNPELPPELVTYAVLPNIGYFEFIPLVENVDGVEATPVGLTEVKLDEEYEIVVTNFAGLYRYRLGDVVKIKGFHNRTPELQFICRRNLLLSINIDKNTEKDLQLAVEAAAQLLLNEKLEVVDFSSNVNTTADPGHYVIFWELNGEASEEILKECCNCLDKSFVDAGYVSSRKVKTIGALELRIVKRGTFHKILDHFVGLGAAVSQFKTPRCVGTTNLSVLQILTSNVVESYFSTAFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="5">
          <exon_coordinates>
            <exon e_start="127329" e_stop="127723"/>
            <exon e_start="129723" e_stop="130035"/>
            <exon e_start="131748" e_stop="131849"/>
            <exon e_start="133552" e_stop="134339"/>
            <exon e_start="134648" e_stop="134905"/>
            <exon e_start="134972" e_stop="135263"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.985" acc_prob="0.998" e_score="0.962"/>
          <exon-intron don_prob="0.999" acc_prob="0.977" e_score="0.946"/>
          <exon-intron don_prob="1.000" acc_prob="0.956" e_score="0.980"/>
          <exon-intron don_prob="0.999" acc_prob="0.976" e_score="0.995"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.950"/>
          <exon-only e_score="0.962"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.962">
            <gDNA_exon_boundary e_start="127329" e_stop="127723" e_length="395"/>
          </exon>
          <intron i_serial="1" don_prob="0.985" acc_prob="0.998">
            <gDNA_intron_boundary i_start="127724" i_stop="129722" i_length="1999"/>
          </intron>
          <exon e_serial="2" e_score="0.946">
            <gDNA_exon_boundary e_start="129723" e_stop="130035" e_length="313"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.977">
            <gDNA_intron_boundary i_start="130036" i_stop="131747" i_length="1712"/>
          </intron>
          <exon e_serial="3" e_score="0.980">
            <gDNA_exon_boundary e_start="131748" e_stop="131849" e_length="102"/>
          </exon>
          <intron i_serial="3" don_prob="1.000" acc_prob="0.956">
            <gDNA_intron_boundary i_start="131850" i_stop="133551" i_length="1702"/>
          </intron>
          <exon e_serial="4" e_score="0.995">
            <gDNA_exon_boundary e_start="133552" e_stop="134339" e_length="788"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.976">
            <gDNA_intron_boundary i_start="134340" i_stop="134647" i_length="308"/>
          </intron>
          <exon e_serial="5" e_score="0.950">
            <gDNA_exon_boundary e_start="134648" e_stop="134905" e_length="258"/>
          </exon>
          <intron i_serial="5" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="134906" i_stop="134971" i_length="66"/>
          </intron>
          <exon e_serial="6" e_score="0.962">
            <gDNA_exon_boundary e_start="134972" e_stop="135263" e_length="292"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127329" stop="127723"/>
              <exon start="129723" stop="129921"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330070" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127329" stop="127723"/>
              <exon start="129723" stop="129901"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E329896" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127329" stop="127723"/>
              <exon start="129723" stop="129887"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E330069" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="127651" stop="127723"/>
              <exon start="129723" stop="130035"/>
              <exon start="131748" stop="131849"/>
              <exon start="133552" stop="133856"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E599984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="129931" stop="130035"/>
              <exon start="131748" stop="131849"/>
              <exon start="133552" stop="133847"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E476023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131808" stop="131849"/>
              <exon start="133552" stop="134182"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369259" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="131808" stop="131849"/>
              <exon start="133552" stop="134034"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E248877" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134015" stop="134339"/>
              <exon start="134648" stop="134801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134234" stop="134339"/>
              <exon start="134648" stop="134905"/>
              <exon start="134972" stop="135263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E572878" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="5" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TAATTCCCATTTAAAGGGGAAAAATATTCTCAAAATTTTTCTGTTCACAACACTGCATTTCTGCCTTAAACTATACCCCAATGATTTGAATTCGAATTTTTTTATCTGATTTTATAATTAATTTTAAATATAAATATATAAATAATATATCAAAATTCATATTTACAATTATAATAAATTTTAAATTCTAAATTCGATGATTGGCCCACAGTGGAACAATGTTAGCTCTAAATCATGCCATCTATAAATATATATACATTGGCTTACCATTTTGGTCAATTGTTTCACAAAGTTTTCTTCTCTCACTTTATTTATAGTATATGTGTTTTTTTCACTTAAATCCAAGCTGACATATATATTTCCCTTCTCTTCGATTCTAGCTATCGTTTATTGAG : GAAGAATATAAATGAAGATGGTGGAGGAAAGGGAGAATAAGCTTGATCCACAACAAGTGATTGATGAATTTGAGCTATTAAGCAAAGATGCTGGGAAAATTCAAGAAAAGACCTTACAAAAGATTCTTGAAGAAAATGGAAGGACAGAATATTTGCAACAATGGGGTCTTAATGGGAAAACAGATCAAGTTTCTTTCAAGAATTGTGTTCCTCTTGTTACACATAAGGATTTGGAGCCTTACATTTGTAGAATTGTTGATGGTGATCTTACTCCTATTCTCACTAGAAAGCCTATTACTACCATCTCGTTGAG : TTCTGGTACAACTCAAGGAAAGCCAAAATTTGTACCTTTCAATGAAGAATTGATGGAATCCACCATGCAAATATTCAAGACTTCTTTTGCCTTTAGGAACAG : AGAATTCCCAGTTGTAAATGGGAAAGCATTACAGTTCATTTATGGAAGCAAACAGTTCAAGACGAAGGGAGGTTTAGCAGCTGGAACAGCCACAACAAATGTGTATCGAAATTCGCAATTCAAGAAGACAATGAAAGCAATGCAGACCCCATGTTGTAGCCCTGATGAAGTGATATTCGGCCCTGATTTCCATCAGTCCTTGTACTGTCATCTCCTGTGTGGTCTCATTTTACGTAACGAAGTTCAAGTTGTCTCATCTACATTTGCTCATAGTATTGTCCATGCTTTTAGACAATTCGAACAAGTATGGCAAGAACTTGTTGCTAACATAAGGGACGGAGTCCTTTCAAGTCGCGTAAATGTCCCTTCTATAAGATCAGCAATGTCAAAATTACTCAAACCTGATCCAGAACTGGCTGATACTATTTATAACAAGTGCATTCGGTTAAGTAATTGGTACGGGTTGATACCTGAATTATTCCCCAACACAAGGTACATATATGGTATCATGACCGGATCAATGGAACCTTACTTGACGAAATTGAGGCATTATGCAGGGGATTTACCTCTGCTTAGTGCAGATTACGGATCTTCTGAAGGATGGATCGGAGCAAATGTTAATCCTGAATTGCCTCCTGAGCTAGTTACTTATGCTGTACTTCCTAATATTGGTTATTTCGAATTCATTCCTCTCGTGGAAAATGTAGATGGCGTGGAGGCTACACCAGTTGGTTTAACTGAAGTTAAACTCGATGAAGAGTATGAAATTGTTGTCACCAATTTCGCTG : GTTTATATCGATACAGGCTTGGTGATGTGGTAAAGATAAAAGGATTCCACAATCGCACTCCCGAGCTCCAATTTATTTGTCGTAGGAATCTCTTACTAAGCATCAACATCGACAAAAACACTGAGAAAGATTTACAACTAGCCGTGGAAGCAGCAGCACAGCTGCTATTAAACGAGAAGTTAGAAGTAGTCGATTTCTCTAGCAACGTAAACACAACAGCTGATCCAGGGCACTATGTAATCTTCTGGGAACTGAATG : GCTATGTTAGCTCTCGGAAGGTCAAAACCATCGGTGCCCTTGAGCTACGGATAGTGAAGAGAGGGACATTTCATAAGATTTTAGATCATTTTGTAGGACTAGGAGCAGCAGTTAGCCAGTTCAAAACTCCGAGATGTGTCGGTACAACGAATCTCTCTGTGCTGCAAATATTGACTAGTAATGTTGTTGAGAGCTATTTTAGTACTGCATTTAGTTGAATTATATGTATGTTTGTTCCCAGAATTGTAAGCTGATTACTTTTCATATCTTAATAATACACTCTGAATTTGTA</gDNA_template>
            <first_frame> *  F  P  F  K  G  E  K  Y  S  Q  N  F  S  V  H  N  T  A  F  L  P  *  T  I  P  Q  *  F  E  F  E  F  F  Y  L  I  L  *  L  I  L  N  I  N  I  *  I  I  Y  Q  N  S  Y  L  Q  L  *  *  I  L  N  S  K  F  D  D  W  P  T  V  E  Q  C  *  L  *  I  M  P  S  I  N  I  Y  T  L  A  Y  H  F  G  Q  L  F  H  K  V  F  F  S  H  F  I  Y  S  I  C  V  F  F  T  *  I  Q  A  D  I  Y  I  S  L  L  F  D  S  S  Y  R  L  L  R :   K  N  I  N  E  D  G  G  G  K  G  E  *  A  *  S  T  T  S  D  *  *  I  *  A  I  K  Q  R  C  W  E  N  S  R  K  D  L  T  K  D  S  *  R  K  W  K  D  R  I  F  A  T  M  G  S  *  W  E  N  R  S  S  F  F  Q  E  L  C  S  S  C  Y  T  *  G  F  G  A  L  H  L  *  N  C  *  W  *  S  Y  S  Y  S  H  *  K  A  Y  Y  Y  H  L  V  E  :  F  W  Y  N  S  R  K  A  K  I  C  T  F  Q  *  R  I  D  G  I  H  H  A  N  I  Q  D  F  F  C  L  *  E  Q  :  R  I  P  S  C  K  W  E  S  I  T  V  H  L  W  K  Q  T  V  Q  D  E  G  R  F  S  S  W  N  S  H  N  K  C  V  S  K  F  A  I  Q  E  D  N  E  S  N  A  D  P  M  L  *  P  *  *  S  D  I  R  P  *  F  P  S  V  L  V  L  S  S  P  V  W  S  H  F  T  *  R  S  S  S  C  L  I  Y  I  C  S  *  Y  C  P  C  F  *  T  I  R  T  S  M  A  R  T  C  C  *  H  K  G  R  S  P  F  K  S  R  K  C  P  F  Y  K  I  S  N  V  K  I  T  Q  T  *  S  R  T  G  *  Y  Y  L  *  Q  V  H  S  V  K  *  L  V  R  V  D  T  *  I  I  P  Q  H  K  V  H  I  W  Y  H  D  R  I  N  G  T  L  L  D  E  I  E  A  L  C  R  G  F  T  S  A  *  C  R  L  R  I  F  *  R  M  D  R  S  K  C  *  S  *  I  A  S  *  A  S  Y  L  C  C  T  S  *  Y  W  L  F  R  I  H  S  S  R  G  K  C  R  W  R  G  G  Y  T  S  W  F  N  *  S  *  T  R  *  R  V  *  N  C  C  H  Q  F  R  W :   F  I  S  I  Q  A  W  *  C  G  K  D  K  R  I  P  Q  S  H  S  R  A  P  I  Y  L  S  *  E  S  L  T  K  H  Q  H  R  Q  K  H  *  E  R  F  T  T  S  R  G  S  S  S  T  A  A  I  K  R  E  V  R  S  S  R  F  L  *  Q  R  K  H  N  S  *  S  R  A  L  C  N  L  L  G  T  E  W :   L  C  *  L  S  E  G  Q  N  H  R  C  P  *  A  T  D  S  E  E  R  D  I  S  *  D  F  R  S  F  C  R  T  R  S  S  S  *  P  V  Q  N  S  E  M  C  R  Y  N  E  S  L  C  A  A  N  I  D  *  *  C  C  *  E  L  F  *  Y  C  I  *  L  N  Y  M  Y  V  C  S  Q  N  C  K  L  I  T  F  H  I  L  I  I  H  S  E  F  V </first_frame>
            <second_frame>  N  S  H  L  K  G  K  N  I  L  K  I  F  L  F  T  T  L  H  F  C  L  K  L  Y  P  N  D  L  N  S  N  F  F  I  *  F  Y  N  *  F  *  I  *  I  Y  K  *  Y  I  K  I  H  I  Y  N  Y  N  K  F  *  I  L  N  S  M  I  G  P  Q  W  N  N  V  S  S  K  S  C  H  L  *  I  Y  I  H  W  L  T  I  L  V  N  C  F  T  K  F  S  S  L  T  L  F  I  V  Y  V  F  F  S  L  K  S  K  L  T  Y  I  F  P  F  S  S  I  L  A  I  V  Y  *   : G  R  I  *  M  K  M  V  E  E  R  E  N  K  L  D  P  Q  Q  V  I  D  E  F  E  L  L  S  K  D  A  G  K  I  Q  E  K  T  L  Q  K  I  L  E  E  N  G  R  T  E  Y  L  Q  Q  W  G  L  N  G  K  T  D  Q  V  S  F  K  N  C  V  P  L  V  T  H  K  D  L  E  P  Y  I  C  R  I  V  D  G  D  L  T  P  I  L  T  R  K  P  I  T  T  I  S  L  S :   S  G  T  T  Q  G  K  P  K  F  V  P  F  N  E  E  L  M  E  S  T  M  Q  I  F  K  T  S  F  A  F  R  N  R :   E  F  P  V  V  N  G  K  A  L  Q  F  I  Y  G  S  K  Q  F  K  T  K  G  G  L  A  A  G  T  A  T  T  N  V  Y  R  N  S  Q  F  K  K  T  M  K  A  M  Q  T  P  C  C  S  P  D  E  V  I  F  G  P  D  F  H  Q  S  L  Y  C  H  L  L  C  G  L  I  L  R  N  E  V  Q  V  V  S  S  T  F  A  H  S  I  V  H  A  F  R  Q  F  E  Q  V  W  Q  E  L  V  A  N  I  R  D  G  V  L  S  S  R  V  N  V  P  S  I  R  S  A  M  S  K  L  L  K  P  D  P  E  L  A  D  T  I  Y  N  K  C  I  R  L  S  N  W  Y  G  L  I  P  E  L  F  P  N  T  R  Y  I  Y  G  I  M  T  G  S  M  E  P  Y  L  T  K  L  R  H  Y  A  G  D  L  P  L  L  S  A  D  Y  G  S  S  E  G  W  I  G  A  N  V  N  P  E  L  P  P  E  L  V  T  Y  A  V  L  P  N  I  G  Y  F  E  F  I  P  L  V  E  N  V  D  G  V  E  A  T  P  V  G  L  T  E  V  K  L  D  E  E  Y  E  I  V  V  T  N  F  A   : G  L  Y  R  Y  R  L  G  D  V  V  K  I  K  G  F  H  N  R  T  P  E  L  Q  F  I  C  R  R  N  L  L  L  S  I  N  I  D  K  N  T  E  K  D  L  Q  L  A  V  E  A  A  A  Q  L  L  L  N  E  K  L  E  V  V  D  F  S  S  N  V  N  T  T  A  D  P  G  H  Y  V  I  F  W  E  L  N   : G  Y  V  S  S  R  K  V  K  T  I  G  A  L  E  L  R  I  V  K  R  G  T  F  H  K  I  L  D  H  F  V  G  L  G  A  A  V  S  Q  F  K  T  P  R  C  V  G  T  T  N  L  S  V  L  Q  I  L  T  S  N  V  V  E  S  Y  F  S  T  A  F  S  *  I  I  C  M  F  V  P  R  I  V  S  *  L  L  F  I  S  *  *  Y  T  L  N  L   </second_frame>
            <third_frame>   I  P  I  *  R  G  K  I  F  S  K  F  F  C  S  Q  H  C  I  S  A  L  N  Y  T  P  M  I  *  I  R  I  F  L  S  D  F  I  I  N  F  K  Y  K  Y  I  N  N  I  S  K  F  I  F  T  I  I  I  N  F  K  F  *  I  R  *  L  A  H  S  G  T  M  L  A  L  N  H  A  I  Y  K  Y  I  Y  I  G  L  P  F  W  S  I  V  S  Q  S  F  L  L  S  L  Y  L  *  Y  M  C  F  F  H  L  N  P  S  *  H  I  Y  F  P  S  L  R  F  *  L  S  F  I  E  :  E  E  Y  K  *  R  W  W  R  K  G  R  I  S  L  I  H  N  K  *  L  M  N  L  S  Y  *  A  K  M  L  G  K  F  K  K  R  P  Y  K  R  F  L  K  K  M  E  G  Q  N  I  C  N  N  G  V  L  M  G  K  Q  I  K  F  L  S  R  I  V  F  L  L  L  H  I  R  I  W  S  L  T  F  V  E  L  L  M  V  I  L  L  L  F  S  L  E  S  L  L  L  P  S  R  *   : V  L  V  Q  L  K  E  S  Q  N  L  Y  L  S  M  K  N  *  W  N  P  P  C  K  Y  S  R  L  L  L  P  L  G  T   : E  N  S  Q  L  *  M  G  K  H  Y  S  S  F  M  E  A  N  S  S  R  R  R  E  V  *  Q  L  E  Q  P  Q  Q  M  C  I  E  I  R  N  S  R  R  Q  *  K  Q  C  R  P  H  V  V  A  L  M  K  *  Y  S  A  L  I  S  I  S  P  C  T  V  I  S  C  V  V  S  F  Y  V  T  K  F  K  L  S  H  L  H  L  L  I  V  L  S  M  L  L  D  N  S  N  K  Y  G  K  N  L  L  L  T  *  G  T  E  S  F  Q  V  A  *  M  S  L  L  *  D  Q  Q  C  Q  N  Y  S  N  L  I  Q  N  W  L  I  L  F  I  T  S  A  F  G  *  V  I  G  T  G  *  Y  L  N  Y  S  P  T  Q  G  T  Y  M  V  S  *  P  D  Q  W  N  L  T  *  R  N  *  G  I  M  Q  G  I  Y  L  C  L  V  Q  I  T  D  L  L  K  D  G  S  E  Q  M  L  I  L  N  C  L  L  S  *  L  L  M  L  Y  F  L  I  L  V  I  S  N  S  F  L  S  W  K  M  *  M  A  W  R  L  H  Q  L  V  *  L  K  L  N  S  M  K  S  M  K  L  L  S  P  I  S  L  :  V  Y  I  D  T  G  L  V  M  W  *  R  *  K  D  S  T  I  A  L  P  S  S  N  L  F  V  V  G  I  S  Y  *  A  S  T  S  T  K  T  L  R  K  I  Y  N  *  P  W  K  Q  Q  H  S  C  Y  *  T  R  S  *  K  *  S  I  S  L  A  T  *  T  Q  Q  L  I  Q  G  T  M  *  S  S  G  N  *  M  :  A  M  L  A  L  G  R  S  K  P  S  V  P  L  S  Y  G  *  *  R  E  G  H  F  I  R  F  *  I  I  L  *  D  *  E  Q  Q  L  A  S  S  K  L  R  D  V  S  V  Q  R  I  S  L  C  C  K  Y  *  L  V  M  L  L  R  A  I  L  V  L  H  L  V  E  L  Y  V  C  L  F  P  E  L  *  A  D  Y  F  S  Y  L  N  N  T  L  *  I  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="5" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="129734" stop="130035"/>
                    <exon start="131748" stop="131849"/>
                    <exon start="133552" stop="134339"/>
                    <exon start="134648" stop="134905"/>
                    <exon start="134972" stop="135189"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1665</number_coding_nucleotides>
                  <number_encoded_amino_acids>555</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MKMVEERENKLDPQQVIDEFELLSKDAGKIQEKTLQKILEENGRTEYLQQWGLNGKTDQVSFKNCVPLVTHKDLEPYICRIVDGDLTPILTRKPITTISLSSGTTQGKPKFVPFNEELMESTMQIFKTSFAFRNREFPVVNGKALQFIYGSKQFKTKGGLAAGTATTNVYRNSQFKKTMKAMQTPCCSPDEVIFGPDFHQSLYCHLLCGLILRNEVQVVSSTFAHSIVHAFRQFEQVWQELVANIRDGVLSSRVNVPSIRSAMSKLLKPDPELADTIYNKCIRLSNWYGLIPELFPNTRYIYGIMTGSMEPYLTKLRHYAGDLPLLSADYGSSEGWIGANVNPELPPELVTYAVLPNIGYFEFIPLVENVDGVEATPVGLTEVKLDEEYEIVVTNFAGLYRYRLGDVVKIKGFHNRTPELQFICRRNLLLSINIDKNTEKDLQLAVEAAAQLLLNEKLEVVDFSSNVNTTADPGHYVIFWELNGYVSSRKVKTIGALELRIVKRGTFHKILDHFVGLGAAVSQFKTPRCVGTTNLSVLQILTSNVVESYFSTAFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="6">
          <exon_coordinates>
            <exon e_start="133551" e_stop="134339"/>
            <exon e_start="134648" e_stop="135274"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.999" acc_prob="0.976" e_score="0.949"/>
          <exon-only e_score="0.948"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.949">
            <gDNA_exon_boundary e_start="133551" e_stop="134339" e_length="789"/>
          </exon>
          <intron i_serial="1" don_prob="0.999" acc_prob="0.976">
            <gDNA_intron_boundary i_start="134340" i_stop="134647" i_length="308"/>
          </intron>
          <exon e_serial="2" e_score="0.948">
            <gDNA_exon_boundary e_start="134648" e_stop="135274" e_length="627"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133551" stop="134123"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E409427" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134015" stop="134339"/>
              <exon start="134648" stop="134801"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E341046" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134186" stop="134339"/>
              <exon start="134648" stop="134987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432099" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134188" stop="134339"/>
              <exon start="134648" stop="135083"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E400969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134249" stop="134339"/>
              <exon start="134648" stop="135260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E432100" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134917" stop="135274"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612850" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="134953" stop="135256"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369810" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="18" AGS_serial="6" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAGAATTCCCAGTTGTAAATGGGAAAGCATTACAGTTCATTTATGGAAGCAAACAGTTCAAGACGAAGGGAGGTTTAGCAGCTGGAACAGCCACAACAAATGTGTATCGAAATTCGCAATTCAAGAAGACAATGAAAGCAATGCAGACCCCATGTTGTAGCCCTGATGAAGTGATATTCGGCCCTGATTTCCATCAGTCCTTGTACTGTCATCTCCTGTGTGGTCTCATTTTACGTAACGAAGTTCAAGTTGTCTCATCTACATTTGCTCATAGTATTGTCCATGCTTTTAGACAATTCGAACAAGTATGGCAAGAACTTGTTGCTAACATAAGGGACGGAGTCCTTTCAAGTCGCGTAAATGTCCCTTCTATAAGATCAGCAATGTCAAAATTACTCAAACCTGATCCAGAACTGGCTGATACTATTTATAACAAGTGCATTCGGTTAAGTAATTGGTACGGGTTGATACCTGAATTATTCCCCAACACAAGGTACATATATGGTATCATGACCGGATCAATGGAACCTTACTTGACGAAATTGAGGCATTATGCAGGGGATTTACCTCTGCTTAGTGCAGATTACGGATCTTCTGAAGGATGGATCGGAGCAAATGTTAATCCTGAATTGCCTCCTGAGCTAGTTACTTATGCTGTACTTCCTAATATTGGTTATTTCGAATTCATTCCTCTCGTGGAAAATGTAGATGGCGTGGAGGCTACACCAGTTGGTTTAACTGAAGTTAAACTCGATGAAGAGTATGAAATTGTTGTCACCAATTTCGCTG : GTTTATATCGATACAGGCTTGGTGATGTGGTAAAGATAAAAGGATTCCACAATCGCACTCCCGAGCTCCAATTTATTTGTCGTAGGAATCTCTTACTAAGCATCAACATCGACAAAAACACTGAGAAAGATTTACAACTAGCCGTGGAAGCAGCAGCACAGCTGCTATTAAACGAGAAGTTAGAAGTAGTCGATTTCTCTAGCAACGTAAACACAACAGCTGATCCAGGGCACTATGTAATCTTCTGGGAACTGAATGGTGAGGCAAGTGAGGAAATTCTGAAAGAATGTTGTAATTGTTTGGACAAATCTTTCGTCGATGCTGGCTATGTTAGCTCTCGGAAGGTCAAAACCATCGGTGCCCTTGAGCTACGGATAGTGAAGAGAGGGACATTTCATAAGATTTTAGATCATTTTGTAGGACTAGGAGCAGCAGTTAGCCAGTTCAAAACTCCGAGATGTGTCGGTACAACGAATCTCTCTGTGCTGCAAATATTGACTAGTAATGTTGTTGAGAGCTATTTTAGTACTGCATTTAGTTGAATTATATGTATGTTTGTTCCCAGAATTGTAAGCTGATTACTTTTCATATCTTAATAATACACTCTGAATTTGTACAAATTTTGTA</gDNA_template>
            <first_frame> E  N  S  Q  L  *  M  G  K  H  Y  S  S  F  M  E  A  N  S  S  R  R  R  E  V  *  Q  L  E  Q  P  Q  Q  M  C  I  E  I  R  N  S  R  R  Q  *  K  Q  C  R  P  H  V  V  A  L  M  K  *  Y  S  A  L  I  S  I  S  P  C  T  V  I  S  C  V  V  S  F  Y  V  T  K  F  K  L  S  H  L  H  L  L  I  V  L  S  M  L  L  D  N  S  N  K  Y  G  K  N  L  L  L  T  *  G  T  E  S  F  Q  V  A  *  M  S  L  L  *  D  Q  Q  C  Q  N  Y  S  N  L  I  Q  N  W  L  I  L  F  I  T  S  A  F  G  *  V  I  G  T  G  *  Y  L  N  Y  S  P  T  Q  G  T  Y  M  V  S  *  P  D  Q  W  N  L  T  *  R  N  *  G  I  M  Q  G  I  Y  L  C  L  V  Q  I  T  D  L  L  K  D  G  S  E  Q  M  L  I  L  N  C  L  L  S  *  L  L  M  L  Y  F  L  I  L  V  I  S  N  S  F  L  S  W  K  M  *  M  A  W  R  L  H  Q  L  V  *  L  K  L  N  S  M  K  S  M  K  L  L  S  P  I  S  L  :  V  Y  I  D  T  G  L  V  M  W  *  R  *  K  D  S  T  I  A  L  P  S  S  N  L  F  V  V  G  I  S  Y  *  A  S  T  S  T  K  T  L  R  K  I  Y  N  *  P  W  K  Q  Q  H  S  C  Y  *  T  R  S  *  K  *  S  I  S  L  A  T  *  T  Q  Q  L  I  Q  G  T  M  *  S  S  G  N  *  M  V  R  Q  V  R  K  F  *  K  N  V  V  I  V  W  T  N  L  S  S  M  L  A  M  L  A  L  G  R  S  K  P  S  V  P  L  S  Y  G  *  *  R  E  G  H  F  I  R  F  *  I  I  L  *  D  *  E  Q  Q  L  A  S  S  K  L  R  D  V  S  V  Q  R  I  S  L  C  C  K  Y  *  L  V  M  L  L  R  A  I  L  V  L  H  L  V  E  L  Y  V  C  L  F  P  E  L  *  A  D  Y  F  S  Y  L  N  N  T  L  *  I  C  T  N  F  V </first_frame>
            <second_frame>  R  I  P  S  C  K  W  E  S  I  T  V  H  L  W  K  Q  T  V  Q  D  E  G  R  F  S  S  W  N  S  H  N  K  C  V  S  K  F  A  I  Q  E  D  N  E  S  N  A  D  P  M  L  *  P  *  *  S  D  I  R  P  *  F  P  S  V  L  V  L  S  S  P  V  W  S  H  F  T  *  R  S  S  S  C  L  I  Y  I  C  S  *  Y  C  P  C  F  *  T  I  R  T  S  M  A  R  T  C  C  *  H  K  G  R  S  P  F  K  S  R  K  C  P  F  Y  K  I  S  N  V  K  I  T  Q  T  *  S  R  T  G  *  Y  Y  L  *  Q  V  H  S  V  K  *  L  V  R  V  D  T  *  I  I  P  Q  H  K  V  H  I  W  Y  H  D  R  I  N  G  T  L  L  D  E  I  E  A  L  C  R  G  F  T  S  A  *  C  R  L  R  I  F  *  R  M  D  R  S  K  C  *  S  *  I  A  S  *  A  S  Y  L  C  C  T  S  *  Y  W  L  F  R  I  H  S  S  R  G  K  C  R  W  R  G  G  Y  T  S  W  F  N  *  S  *  T  R  *  R  V  *  N  C  C  H  Q  F  R  W :   F  I  S  I  Q  A  W  *  C  G  K  D  K  R  I  P  Q  S  H  S  R  A  P  I  Y  L  S  *  E  S  L  T  K  H  Q  H  R  Q  K  H  *  E  R  F  T  T  S  R  G  S  S  S  T  A  A  I  K  R  E  V  R  S  S  R  F  L  *  Q  R  K  H  N  S  *  S  R  A  L  C  N  L  L  G  T  E  W  *  G  K  *  G  N  S  E  R  M  L  *  L  F  G  Q  I  F  R  R  C  W  L  C  *  L  S  E  G  Q  N  H  R  C  P  *  A  T  D  S  E  E  R  D  I  S  *  D  F  R  S  F  C  R  T  R  S  S  S  *  P  V  Q  N  S  E  M  C  R  Y  N  E  S  L  C  A  A  N  I  D  *  *  C  C  *  E  L  F  *  Y  C  I  *  L  N  Y  M  Y  V  C  S  Q  N  C  K  L  I  T  F  H  I  L  I  I  H  S  E  F  V  Q  I  L   </second_frame>
            <third_frame>   E  F  P  V  V  N  G  K  A  L  Q  F  I  Y  G  S  K  Q  F  K  T  K  G  G  L  A  A  G  T  A  T  T  N  V  Y  R  N  S  Q  F  K  K  T  M  K  A  M  Q  T  P  C  C  S  P  D  E  V  I  F  G  P  D  F  H  Q  S  L  Y  C  H  L  L  C  G  L  I  L  R  N  E  V  Q  V  V  S  S  T  F  A  H  S  I  V  H  A  F  R  Q  F  E  Q  V  W  Q  E  L  V  A  N  I  R  D  G  V  L  S  S  R  V  N  V  P  S  I  R  S  A  M  S  K  L  L  K  P  D  P  E  L  A  D  T  I  Y  N  K  C  I  R  L  S  N  W  Y  G  L  I  P  E  L  F  P  N  T  R  Y  I  Y  G  I  M  T  G  S  M  E  P  Y  L  T  K  L  R  H  Y  A  G  D  L  P  L  L  S  A  D  Y  G  S  S  E  G  W  I  G  A  N  V  N  P  E  L  P  P  E  L  V  T  Y  A  V  L  P  N  I  G  Y  F  E  F  I  P  L  V  E  N  V  D  G  V  E  A  T  P  V  G  L  T  E  V  K  L  D  E  E  Y  E  I  V  V  T  N  F  A   : G  L  Y  R  Y  R  L  G  D  V  V  K  I  K  G  F  H  N  R  T  P  E  L  Q  F  I  C  R  R  N  L  L  L  S  I  N  I  D  K  N  T  E  K  D  L  Q  L  A  V  E  A  A  A  Q  L  L  L  N  E  K  L  E  V  V  D  F  S  S  N  V  N  T  T  A  D  P  G  H  Y  V  I  F  W  E  L  N  G  E  A  S  E  E  I  L  K  E  C  C  N  C  L  D  K  S  F  V  D  A  G  Y  V  S  S  R  K  V  K  T  I  G  A  L  E  L  R  I  V  K  R  G  T  F  H  K  I  L  D  H  F  V  G  L  G  A  A  V  S  Q  F  K  T  P  R  C  V  G  T  T  N  L  S  V  L  Q  I  L  T  S  N  V  V  E  S  Y  F  S  T  A  F  S  *  I  I  C  M  F  V  P  R  I  V  S  *  L  L  F  I  S  *  *  Y  T  L  N  L  Y  K  F  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="18" AGS_serial="6" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133553" stop="134339"/>
                    <exon start="134648" stop="135189"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1326</number_coding_nucleotides>
                  <number_encoded_amino_acids>442</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EFPVVNGKALQFIYGSKQFKTKGGLAAGTATTNVYRNSQFKKTMKAMQTPCCSPDEVIFGPDFHQSLYCHLLCGLILRNEVQVVSSTFAHSIVHAFRQFEQVWQELVANIRDGVLSSRVNVPSIRSAMSKLLKPDPELADTIYNKCIRLSNWYGLIPELFPNTRYIYGIMTGSMEPYLTKLRHYAGDLPLLSADYGSSEGWIGANVNPELPPELVTYAVLPNIGYFEFIPLVENVDGVEATPVGLTEVKLDEEYEIVVTNFAGLYRYRLGDVVKIKGFHNRTPELQFICRRNLLLSINIDKNTEKDLQLAVEAAAQLLLNEKLEVVDFSSNVNTTADPGHYVIFWELNGEASEEILKECCNCLDKSFVDAGYVSSRKVKTIGALELRIVKRGTFHKILDHFVGLGAAVSQFKTPRCVGTTNLSVLQILTSNVVESYFSTAFS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="19" PGL_strand="-" PGL_start="135262" PGL_stop="134595"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="135262" e_stop="134595"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="135262" e_stop="134595" e_length="668"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135262" stop="134863"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E602539" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="135242" stop="134595"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426112" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="19" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ACAAATTCAGAGTGTATTATTAAGATATGAAAAGTAATCAGCTTACAATTCTGGGAACAAACATACATATAATTCAACTAAATGCAGTACTAAAATAGCTCTCAACAACATTACTAGTCAATATTTGCAGCACAGAGAGATTCGTTGTACCGACACATCTCGGAGTTTTGAACTGGCTAACTGCTGCTCCTAGTCCTACAAAATGATCTAAAATCTTATGAAATGTCCCTCTCTTCACTATCCGTAGCTCAAGGGCACCGATGGTTTTGACCTTCCGAGAGCTAACATAGCCAGCATCGACGAAAGATTTGTCCAAACAATTACAACATTCTTTCAGAATTTCCTCACTTGCCTCACCATTCAGTTCCCAGAAGATTACATAGTGCCCTGGATCAGCTGTTGTGTTTACGTTGCTAGAGAAATCGACTACTTCTAACTTCTCGTTTAATAGCAGCTGTGCTGCTGCTTCCACGGCTAGTTGTAAATCTTTCTCAGTGTTTTTGTCGATGTTGATGCTTAGTAAGAGATTCCTACGACAAATAAATTGGAGCTCGGGAGTGCGATTGTGGAATCCTTTTATCTTTACCACATCACCAAGCCTGTATCGATATAAACCTGCATCTTACACGGTATATATTCAATCAAGTCAAAACGAATAACAACATAAG</gDNA_template>
            <first_frame> T  N  S  E  C  I  I  K  I  *  K  V  I  S  L  Q  F  W  E  Q  T  Y  I  *  F  N  *  M  Q  Y  *  N  S  S  Q  Q  H  Y  *  S  I  F  A  A  Q  R  D  S  L  Y  R  H  I  S  E  F  *  T  G  *  L  L  L  L  V  L  Q  N  D  L  K  S  Y  E  M  S  L  S  S  L  S  V  A  Q  G  H  R  W  F  *  P  S  E  S  *  H  S  Q  H  R  R  K  I  C  P  N  N  Y  N  I  L  S  E  F  P  H  L  P  H  H  S  V  P  R  R  L  H  S  A  L  D  Q  L  L  C  L  R  C  *  R  N  R  L  L  L  T  S  R  L  I  A  A  V  L  L  L  P  R  L  V  V  N  L  S  Q  C  F  C  R  C  *  C  L  V  R  D  S  Y  D  K  *  I  G  A  R  E  C  D  C  G  I  L  L  S  L  P  H  H  Q  A  C  I  D  I  N  L  H  L  T  R  Y  I  F  N  Q  V  K  T  N  N  N  I   </first_frame>
            <second_frame>  Q  I  Q  S  V  L  L  R  Y  E  K  *  S  A  Y  N  S  G  N  K  H  T  Y  N  S  T  K  C  S  T  K  I  A  L  N  N  I  T  S  Q  Y  L  Q  H  R  E  I  R  C  T  D  T  S  R  S  F  E  L  A  N  C  C  S  *  S  Y  K  M  I  *  N  L  M  K  C  P  S  L  H  Y  P  *  L  K  G  T  D  G  F  D  L  P  R  A  N  I  A  S  I  D  E  R  F  V  Q  T  I  T  T  F  F  Q  N  F  L  T  C  L  T  I  Q  F  P  E  D  Y  I  V  P  W  I  S  C  C  V  Y  V  A  R  E  I  D  Y  F  *  L  L  V  *  *  Q  L  C  C  C  F  H  G  *  L  *  I  F  L  S  V  F  V  D  V  D  A  *  *  E  I  P  T  T  N  K  L  E  L  G  S  A  I  V  E  S  F  Y  L  Y  H  I  T  K  P  V  S  I  *  T  C  I  L  H  G  I  Y  S  I  K  S  K  R  I  T  T  *  </second_frame>
            <third_frame>   K  F  R  V  Y  Y  *  D  M  K  S  N  Q  L  T  I  L  G  T  N  I  H  I  I  Q  L  N  A  V  L  K  *  L  S  T  T  L  L  V  N  I  C  S  T  E  R  F  V  V  P  T  H  L  G  V  L  N  W  L  T  A  A  P  S  P  T  K  *  S  K  I  L  *  N  V  P  L  F  T  I  R  S  S  R  A  P  M  V  L  T  F  R  E  L  T  *  P  A  S  T  K  D  L  S  K  Q  L  Q  H  S  F  R  I  S  S  L  A  S  P  F  S  S  Q  K  I  T  *  C  P  G  S  A  V  V  F  T  L  L  E  K  S  T  T  S  N  F  S  F  N  S  S  C  A  A  A  S  T  A  S  C  K  S  F  S  V  F  L  S  M  L  M  L  S  K  R  F  L  R  Q  I  N  W  S  S  G  V  R  L  W  N  P  F  I  F  T  T  S  P  S  L  Y  R  Y  K  P  A  S  Y  T  V  Y  I  Q  S  S  Q  N  E  *  Q  H  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="-"/>
                <serials PGL_serial="19" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="134879" stop="134604"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>273</number_coding_nucleotides>
                  <number_encoded_amino_acids>91</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CPGSAVVFTLLEKSTTSNFSFNSSCAAASTASCKSFSVFLSMLMLSKRFLRQINWSSGVRLWNPFIFTTSPSLYRYKPASYTVYIQSSQNE*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="20" PGL_strand="-" PGL_start="171182" PGL_stop="145686"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="171182" e_stop="170739"/>
            <exon e_start="146274" e_stop="146064"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.900" acc_prob="0.000" e_score="0.944"/>
          <exon-only e_score="0.924"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.944">
            <gDNA_exon_boundary e_start="171182" e_stop="170739" e_length="444"/>
          </exon>
          <intron i_serial="1" don_prob="0.900" acc_prob="0.000">
            <gDNA_intron_boundary i_start="170738" i_stop="146275" i_length="24464"/>
          </intron>
          <exon e_serial="2" e_score="0.924">
            <gDNA_exon_boundary e_start="146274" e_stop="146064" e_length="211"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="171182" stop="170739"/>
              <exon start="146274" stop="146064"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E541821" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCACGTGTACAAGCCTCTAAAGTATTACAATTGATTCAAAAGAAAAACTCAAGTCTCAAATGAACTTGTTTCTAGAATAGAACAAGATCATAATTATGGAGAAGAAAGTCTGCCGAGATGGAAACAACTACCTCACAAATCTCCAAGAAACCTCGGAAAAGAAGAGAATGACAAGTACAACAAAAATCCAGGCTCATAACCTACAAAAAAATTGTAGTAGCAAGGGTGAGTACCAAACCACACGGTACTCAGCAAGTAAATCTCTAAACACAAGCTAAGGGGATGAAATACGGGTACTCCTACCACCCCCAACCGAACCTCCACAACTACAACCTGCATTAAAATCAACCCAACCTAACAGCTCACAATTTACATAACACATAGCTCAATAACAACACTTAGATAAATTACATATCCTCAACAACAACACTTTCACAAATTAC : ATATCCTCAACAACAACACTTTAACAAATTACATATCCTCAACAACAATACTTCAAAAAATTACATATCCGCAATAACAAACTCAATATTGATCAATCATAAGTTCAACAGAAAGGCAATCAGAAGATCAACAAAACACGATATCAAGTTCACTAATGTTAAGTATGTGCATTACAATGGAATGCAATGTCAAGTATAATGATGCATGTCT</gDNA_template>
            <first_frame> V  T  C  T  S  L  *  S  I  T  I  D  S  K  E  K  L  K  S  Q  M  N  L  F  L  E  *  N  K  I  I  I  M  E  K  K  V  C  R  D  G  N  N  Y  L  T  N  L  Q  E  T  S  E  K  K  R  M  T  S  T  T  K  I  Q  A  H  N  L  Q  K  N  C  S  S  K  G  E  Y  Q  T  T  R  Y  S  A  S  K  S  L  N  T  S  *  G  D  E  I  R  V  L  L  P  P  P  T  E  P  P  Q  L  Q  P  A  L  K  S  T  Q  P  N  S  S  Q  F  T  *  H  I  A  Q  *  Q  H  L  D  K  L  H  I  L  N  N  N  T  F  T  N  Y  :  I  S  S  T  T  T  L  *  Q  I  T  Y  P  Q  Q  Q  Y  F  K  K  L  H  I  R  N  N  K  L  N  I  D  Q  S  *  V  Q  Q  K  G  N  Q  K  I  N  K  T  R  Y  Q  V  H  *  C  *  V  C  A  L  Q  W  N  A  M  S  S  I  M  M  H  V  </first_frame>
            <second_frame>  S  R  V  Q  A  S  K  V  L  Q  L  I  Q  K  K  N  S  S  L  K  *  T  C  F  *  N  R  T  R  S  *  L  W  R  R  K  S  A  E  M  E  T  T  T  S  Q  I  S  K  K  P  R  K  R  R  E  *  Q  V  Q  Q  K  S  R  L  I  T  Y  K  K  I  V  V  A  R  V  S  T  K  P  H  G  T  Q  Q  V  N  L  *  T  Q  A  K  G  M  K  Y  G  Y  S  Y  H  P  Q  P  N  L  H  N  Y  N  L  H  *  N  Q  P  N  L  T  A  H  N  L  H  N  T  *  L  N  N  N  T  *  I  N  Y  I  S  S  T  T  T  L  S  Q  I  T :   Y  P  Q  Q  Q  H  F  N  K  L  H  I  L  N  N  N  T  S  K  N  Y  I  S  A  I  T  N  S  I  L  I  N  H  K  F  N  R  K  A  I  R  R  S  T  K  H  D  I  K  F  T  N  V  K  Y  V  H  Y  N  G  M  Q  C  Q  V  *  *  C  M  S </second_frame>
            <third_frame>   H  V  Y  K  P  L  K  Y  Y  N  *  F  K  R  K  T  Q  V  S  N  E  L  V  S  R  I  E  Q  D  H  N  Y  G  E  E  S  L  P  R  W  K  Q  L  P  H  K  S  P  R  N  L  G  K  E  E  N  D  K  Y  N  K  N  P  G  S  *  P  T  K  K  L  *  *  Q  G  *  V  P  N  H  T  V  L  S  K  *  I  S  K  H  K  L  R  G  *  N  T  G  T  P  T  T  P  N  R  T  S  T  T  T  T  C  I  K  I  N  P  T  *  Q  L  T  I  Y  I  T  H  S  S  I  T  T  L  R  *  I  T  Y  P  Q  Q  Q  H  F  H  K  L   : H  I  L  N  N  N  T  L  T  N  Y  I  S  S  T  T  I  L  Q  K  I  T  Y  P  Q  *  Q  T  Q  Y  *  S  I  I  S  S  T  E  R  Q  S  E  D  Q  Q  N  T  I  S  S  S  L  M  L  S  M  C  I  T  M  E  C  N  V  K  Y  N  D  A  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="170779" stop="170739"/>
                    <exon start="146274" stop="146076"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>INYISSTTTLSQITYPQQQHFNKLHILNNNTSKNYISAITNSILINHKFNRKAIRRSTKHDIKFTNVKYVHYNGMQCQV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="171101" stop="170904"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NKIIIMEKKVCRDGNNYLTNLQETSEKKRMTSTTKIQAHNLQKNCSSKGEYQTTRYSASKSLNTS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="146282" e_stop="145904"/>
            <exon e_start="145865" e_stop="145686"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.921"/>
          <exon-only e_score="0.928"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.921">
            <gDNA_exon_boundary e_start="146282" e_stop="145904" e_length="379"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="145903" i_stop="145866" i_length="38"/>
          </intron>
          <exon e_serial="2" e_score="0.928">
            <gDNA_exon_boundary e_start="145865" e_stop="145686" e_length="180"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="146282" stop="145904"/>
              <exon start="145865" stop="145686"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E243101" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="20" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAAATTACATATCCTCAACAACAACACTTTAACAAATTACATATCCTCAACAACAATACTTCAAAAAATTACATATCCGCAATAACAAACTCAATATTGATCAATCATAAGTTCAACAGAAAGGCAATCAGAAGATCAACAAAACACGATATCAAGTTCACTAATGTTAAGTATGTGCATTACAATGGAATGCAATGTCAAGTATAATGATGCATGTCTGACCTAGTGATACACACCCGCTGTCTCTCAGTCCGGGACCCATGGGGGACATATCTGTCCATGCATCTGTCGCGGCGCACGACATGACCCTCGATAATAGTAACCATCGCGGCGCGCGATACATCCCTCGAAATATATTATCCATCGCGACGCGCGATAC : GTCCCTCGAAATGTTACATCCTCTTAAGTACTCATTCTTTCTCAATGCACATAACACTTGTCACAACCAATGCCTCATAATAATGCAGATGACAAGTTCACACAAATAATGAGGAGATGACCATTTTCATAACATTGCACAATTCACAACCACACAAACATGAAATCACATCAACAATGA</gDNA_template>
            <first_frame> Q  I  T  Y  P  Q  Q  Q  H  F  N  K  L  H  I  L  N  N  N  T  S  K  N  Y  I  S  A  I  T  N  S  I  L  I  N  H  K  F  N  R  K  A  I  R  R  S  T  K  H  D  I  K  F  T  N  V  K  Y  V  H  Y  N  G  M  Q  C  Q  V  *  *  C  M  S  D  L  V  I  H  T  R  C  L  S  V  R  D  P  W  G  T  Y  L  S  M  H  L  S  R  R  T  T  *  P  S  I  I  V  T  I  A  A  R  D  T  S  L  E  I  Y  Y  P  S  R  R  A  I   : R  P  S  K  C  Y  I  L  L  S  T  H  S  F  S  M  H  I  T  L  V  T  T  N  A  S  *  *  C  R  *  Q  V  H  T  N  N  E  E  M  T  I  F  I  T  L  H  N  S  Q  P  H  K  H  E  I  T  S  T  M  </first_frame>
            <second_frame>  K  L  H  I  L  N  N  N  T  L  T  N  Y  I  S  S  T  T  I  L  Q  K  I  T  Y  P  Q  *  Q  T  Q  Y  *  S  I  I  S  S  T  E  R  Q  S  E  D  Q  Q  N  T  I  S  S  S  L  M  L  S  M  C  I  T  M  E  C  N  V  K  Y  N  D  A  C  L  T  *  *  Y  T  P  A  V  S  Q  S  G  T  H  G  G  H  I  C  P  C  I  C  R  G  A  R  H  D  P  R  *  *  *  P  S  R  R  A  I  H  P  S  K  Y  I  I  H  R  D  A  R  Y  :  V  P  R  N  V  T  S  S  *  V  L  I  L  S  Q  C  T  *  H  L  S  Q  P  M  P  H  N  N  A  D  D  K  F  T  Q  I  M  R  R  *  P  F  S  *  H  C  T  I  H  N  H  T  N  M  K  S  H  Q  Q  * </second_frame>
            <third_frame>   N  Y  I  S  S  T  T  T  L  *  Q  I  T  Y  P  Q  Q  Q  Y  F  K  K  L  H  I  R  N  N  K  L  N  I  D  Q  S  *  V  Q  Q  K  G  N  Q  K  I  N  K  T  R  Y  Q  V  H  *  C  *  V  C  A  L  Q  W  N  A  M  S  S  I  M  M  H  V  *  P  S  D  T  H  P  L  S  L  S  P  G  P  M  G  D  I  S  V  H  A  S  V  A  A  H  D  M  T  L  D  N  S  N  H  R  G  A  R  Y  I  P  R  N  I  L  S  I  A  T  R  D  T :   S  L  E  M  L  H  P  L  K  Y  S  F  F  L  N  A  H  N  T  C  H  N  Q  C  L  I  I  M  Q  M  T  S  S  H  K  *  *  G  D  D  H  F  H  N  I  A  Q  F  T  T  T  Q  T  *  N  H  I  N  N   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146061" stop="145904"/>
                    <exon start="145865" stop="145757"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>264</number_coding_nucleotides>
                  <number_encoded_amino_acids>88</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PSDTHPLSLSPGPMGDISVHASVAAHDMTLDNSNHRGARYIPRNILSIATRDTSLEMLHPLKYSFFLNAHNTCHNQCLIIMQMTSSHK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="-"/>
                <serials PGL_serial="20" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="146282" stop="146076"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>QITYPQQQHFNKLHILNNNTSKNYISAITNSILINHKFNRKAIRRSTKHDIKFTNVKYVHYNGMQCQV*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="21" PGL_strand="+" PGL_start="169993" PGL_stop="170410"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="169993" e_stop="170120"/>
            <exon e_start="170171" e_stop="170410"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.867"/>
          <exon-only e_score="0.938"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.867">
            <gDNA_exon_boundary e_start="169993" e_stop="170120" e_length="128"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="170121" i_stop="170170" i_length="50"/>
          </intron>
          <exon e_serial="2" e_score="0.938">
            <gDNA_exon_boundary e_start="170171" e_stop="170410" e_length="240"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="169993" stop="170120"/>
              <exon start="170171" stop="170410"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E278592" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="21" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TATATGTTTGGGAGTAACAGGATTGGTGATGGATTGACTTATCCACATTAATTAATTCTAATGATGAAAAAAAAGGGATAACAAAAGGCAATGTGATTAATTGTTTATGTGTGATGTGTTGAGAAAGG : TGAAGGCTTGTTGAATCATTGTTAATGTGATTTCATGTTTGTGTGGTTGTGAACTGTGCAATGTTATGAAAATGGTCATCTTCTCATTATTTGTGTGAACTTGTCATCTGCATTATTATGAGGCATTGGTTGTGACAAGTGTTATGTGCATTGAGAAAGAATGAGTACTTAAGAGGATGTACCATTTCGAGGGACGTATCGCGTGCCGCGATGGAAAATATATTTCGAGGGACGTATCGC</gDNA_template>
            <first_frame> Y  M  F  G  S  N  R  I  G  D  G  L  T  Y  P  H  *  L  I  L  M  M  K  K  K  G  *  Q  K  A  M  *  L  I  V  Y  V  *  C  V  E  K  G :   E  G  L  L  N  H  C  *  C  D  F  M  F  V  W  L  *  T  V  Q  C  Y  E  N  G  H  L  L  I  I  C  V  N  L  S  S  A  L  L  *  G  I  G  C  D  K  C  Y  V  H  *  E  R  M  S  T  *  E  D  V  P  F  R  G  T  Y  R  V  P  R  W  K  I  Y  F  E  G  R  I   </first_frame>
            <second_frame>  I  C  L  G  V  T  G  L  V  M  D  *  L  I  H  I  N  *  F  *  *  *  K  K  R  D  N  K  R  Q  C  D  *  L  F  M  C  D  V  L  R  K   : V  K  A  C  *  I  I  V  N  V  I  S  C  L  C  G  C  E  L  C  N  V  M  K  M  V  I  F  S  L  F  V  *  T  C  H  L  H  Y  Y  E  A  L  V  V  T  S  V  M  C  I  E  K  E  *  V  L  K  R  M  Y  H  F  E  G  R  I  A  C  R  D  G  K  Y  I  S  R  D  V  S  </second_frame>
            <third_frame>   Y  V  W  E  *  Q  D  W  *  W  I  D  L  S  T  L  I  N  S  N  D  E  K  K  G  I  T  K  G  N  V  I  N  C  L  C  V  M  C  *  E  R  :  *  R  L  V  E  S  L  L  M  *  F  H  V  C  V  V  V  N  C  A  M  L  *  K  W  S  S  S  H  Y  L  C  E  L  V  I  C  I  I  M  R  H  W  L  *  Q  V  L  C  A  L  R  K  N  E  Y  L  R  G  C  T  I  S  R  D  V  S  R  A  A  M  E  N  I  F  R  G  T  Y  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0034P15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="22" PGL_strand="-" PGL_start="178499" PGL_stop="178169"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="178499" e_stop="178169"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.937"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.937">
            <gDNA_exon_boundary e_start="178499" e_stop="178169" e_length="331"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="178499" stop="178169"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352716" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="22" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GATCTGTCCCAGGCTTGGCTAACGTTACAGTTTTAGCATTACAATCTAAGATTGCAAAATTTGGAGAAAGACAAGTCATACCCAGAATTACATCGAAGTCAACCATTTCTAAGATAACCAAGTCTACATGAGTATTGCTCCCCACAAAAGTCACCAGAAAAGACCTATATACCTTTTCAACTATCACAGACTCACCCACCGGAGTACAAGCACGAATAGGCATGTCAAGCAATTCACAATTTAAATTAAGTCCAGTAACAAATGCGGAAGATACATATGAAAATGTGGAGCCAGGGTCAAATAATACAGAAGCCATACAATCACAAACCAA</gDNA_template>
            <first_frame> D  L  S  Q  A  W  L  T  L  Q  F  *  H  Y  N  L  R  L  Q  N  L  E  K  D  K  S  Y  P  E  L  H  R  S  Q  P  F  L  R  *  P  S  L  H  E  Y  C  S  P  Q  K  S  P  E  K  T  Y  I  P  F  Q  L  S  Q  T  H  P  P  E  Y  K  H  E  *  A  C  Q  A  I  H  N  L  N  *  V  Q  *  Q  M  R  K  I  H  M  K  M  W  S  Q  G  Q  I  I  Q  K  P  Y  N  H  K  P  </first_frame>
            <second_frame>  I  C  P  R  L  G  *  R  Y  S  F  S  I  T  I  *  D  C  K  I  W  R  K  T  S  H  T  Q  N  Y  I  E  V  N  H  F  *  D  N  Q  V  Y  M  S  I  A  P  H  K  S  H  Q  K  R  P  I  Y  L  F  N  Y  H  R  L  T  H  R  S  T  S  T  N  R  H  V  K  Q  F  T  I  *  I  K  S  S  N  K  C  G  R  Y  I  *  K  C  G  A  R  V  K  *  Y  R  S  H  T  I  T  N  Q </second_frame>
            <third_frame>   S  V  P  G  L  A  N  V  T  V  L  A  L  Q  S  K  I  A  K  F  G  E  R  Q  V  I  P  R  I  T  S  K  S  T  I  S  K  I  T  K  S  T  *  V  L  L  P  T  K  V  T  R  K  D  L  Y  T  F  S  T  I  T  D  S  P  T  G  V  Q  A  R  I  G  M  S  S  N  S  Q  F  K  L  S  P  V  T  N  A  E  D  T  Y  E  N  V  E  P  G  S  N  N  T  E  A  I  Q  S  Q  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="-"/>
                <serials PGL_serial="22" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="178368" stop="178171"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLPTKVTRKDLYTFSTITDSPTGVQARIGMSSNSQFKLSPVTNAEDTYENVEPGSNNTEAIQSQT</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="23" PGL_strand="+" PGL_start="178199" PGL_stop="178860"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="178199" e_stop="178860"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="178199" e_stop="178860" e_length="662"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="178199" stop="178860"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E352117" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="23" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTGACCCTGGCTCCACATTTTCATATGTATCTTCCGCATTTGTTACTGGACTTAATTTAAATTGTGAATTGCTTGACATGCCTATTCGTGCTTGTACTCCGGTGGGTGAGTCTGTGATAGTTGAAAAGGTATATAGGTCTTTTCTGGTGACTTTTGTGGGGAGCAATACTCATGTAGACTTGGTTATCTTAGAAATGGTTGACTTCGATGTAATTCTGGGTATGACTTGTCTTTCTCCAAATTTTGCAATCTTAGATTGTAATGCTAAAACTGTAACGTTAGCCAAGCCTGGGACAGATCCGTTAGTATGGGAGGGTGACTACACTTCCACTCCAGTTCGTATCATCTCCTTCCTTCGTGCTAAGAGAATGGTTAGAAAGGGTTGTTTAGCTTTCTTGGCACACCTCAGGGATGATACTACCCAAGTACCTTCGATTGAGTCGGTTTCAATAGTCCGTGAGTTTCTTGATGTGTTTCCTGCAGACCTTCCTGGTATGCCACCGGATAGAGATATTGACTTTTGTATTGATCTGGAGCCGGGCACTCGCCCCATTTCCATACCCCCCTTATAGGATGGCTCCCGCTGAGCTAAGTGAGCTAAAGGCGCAACTTCAAGAGTTGTTAAGTAAAGGTTTCATTAGACCAAGTGCATCCCCTTGGG</gDNA_template>
            <first_frame> F  D  P  G  S  T  F  S  Y  V  S  S  A  F  V  T  G  L  N  L  N  C  E  L  L  D  M  P  I  R  A  C  T  P  V  G  E  S  V  I  V  E  K  V  Y  R  S  F  L  V  T  F  V  G  S  N  T  H  V  D  L  V  I  L  E  M  V  D  F  D  V  I  L  G  M  T  C  L  S  P  N  F  A  I  L  D  C  N  A  K  T  V  T  L  A  K  P  G  T  D  P  L  V  W  E  G  D  Y  T  S  T  P  V  R  I  I  S  F  L  R  A  K  R  M  V  R  K  G  C  L  A  F  L  A  H  L  R  D  D  T  T  Q  V  P  S  I  E  S  V  S  I  V  R  E  F  L  D  V  F  P  A  D  L  P  G  M  P  P  D  R  D  I  D  F  C  I  D  L  E  P  G  T  R  P  I  S  I  P  P  L  *  D  G  S  R  *  A  K  *  A  K  G  A  T  S  R  V  V  K  *  R  F  H  *  T  K  C  I  P  L   </first_frame>
            <second_frame>  L  T  L  A  P  H  F  H  M  Y  L  P  H  L  L  L  D  L  I  *  I  V  N  C  L  T  C  L  F  V  L  V  L  R  W  V  S  L  *  *  L  K  R  Y  I  G  L  F  W  *  L  L  W  G  A  I  L  M  *  T  W  L  S  *  K  W  L  T  S  M  *  F  W  V  *  L  V  F  L  Q  I  L  Q  S  *  I  V  M  L  K  L  *  R  *  P  S  L  G  Q  I  R  *  Y  G  R  V  T  T  L  P  L  Q  F  V  S  S  P  S  F  V  L  R  E  W  L  E  R  V  V  *  L  S  W  H  T  S  G  M  I  L  P  K  Y  L  R  L  S  R  F  Q  *  S  V  S  F  L  M  C  F  L  Q  T  F  L  V  C  H  R  I  E  I  L  T  F  V  L  I  W  S  R  A  L  A  P  F  P  Y  P  P  Y  R  M  A  P  A  E  L  S  E  L  K  A  Q  L  Q  E  L  L  S  K  G  F  I  R  P  S  A  S  P  W  </second_frame>
            <third_frame>   *  P  W  L  H  I  F  I  C  I  F  R  I  C  Y  W  T  *  F  K  L  *  I  A  *  H  A  Y  S  C  L  Y  S  G  G  *  V  C  D  S  *  K  G  I  *  V  F  S  G  D  F  C  G  E  Q  Y  S  C  R  L  G  Y  L  R  N  G  *  L  R  C  N  S  G  Y  D  L  S  F  S  K  F  C  N  L  R  L  *  C  *  N  C  N  V  S  Q  A  W  D  R  S  V  S  M  G  G  *  L  H  F  H  S  S  S  Y  H  L  L  P  S  C  *  E  N  G  *  K  G  L  F  S  F  L  G  T  P  Q  G  *  Y  Y  P  S  T  F  D  *  V  G  F  N  S  P  *  V  S  *  C  V  S  C  R  P  S  W  Y  A  T  G  *  R  Y  *  L  L  Y  *  S  G  A  G  H  S  P  H  F  H  T  P  L  I  G  W  L  P  L  S  *  V  S  *  R  R  N  F  K  S  C  *  V  K  V  S  L  D  Q  V  H  P  L  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0034P15.1" strand="+"/>
                <serials PGL_serial="23" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="178199" stop="178771"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>570</number_coding_nucleotides>
                  <number_encoded_amino_acids>190</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FDPGSTFSYVSSAFVTGLNLNCELLDMPIRACTPVGESVIVEKVYRSFLVTFVGSNTHVDLVILEMVDFDVILGMTCLSPNFAILDCNAKTVTLAKPGTDPLVWEGDYTSTPVRIISFLRAKRMVRKGCLAFLAHLRDDTTQVPSIESVSIVREFLDVFPADLPGMPPDRDIDFCIDLEPGTRPISIPPL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 589 chains have been computed
$ 
$ memory statistics:
$ 763296 bytes spliced alignments in total
$ 210 spliced alignments have been stored
$ 3634 bytes was the average size of a spliced alignment
$ 37144 bytes predicted gene locations in total
$ 23 predicted gene locations have been stored
$ 1614 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 681 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 05:40:00
-->
