<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 05:20:42"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0061A10-VviI8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0061A10-VviI8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0061A10-VviI8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E744421" ref_strand="+" ref_description="SGN-E744421 [GI|399650]">
      <seq>aattctgctttgcttcttgcccaattcctcaagataatctgccatccatatcatctctttcccagcttcagctattgccacaaactcagctttagtggatgaaagagaaacatacttctaaagacacggacatccaacttactgcttttccacctatggtgtaaatgtacccggacgtactcttgctcgagtcaacatccccaccaagatcagcatcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0061A10-VviI8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0061A10.2" temp_strand="-" temp_description="C00HBa0061A10.2  CU927996.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0061A10 sequenced_by:sanger upload_account_name:uk">
        <position start="50508" stop="49693"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50210" g_stop="49993" g_length="218"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="218" r_length="218" r_score="0.913"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0061A10.2" gen_strand="-" ref_id="SGN-E744421" ref_strand="+">
        <total_alignment_score>0.913</total_alignment_score>
        <cumulative_length_of_scored_exons>218</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0061A10.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E744421" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50210" e_stop="49993"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCTCGCTCTGCTTCTTGCCCAATTCCTCAAGATAATCTGCCAGCCATATCATCTCTTTCCCAGCTTCAGCTATTGCCACATACTTAGCTTCAGTAGATGAAAGAGAAACACACTTCTGAAG-CCTGGACATCCAACTCACTTCTGTTCCACCTATGGTGTAAATGTACCCGGATGTACTCTTGCTCGAGTCAACATCCCCACCAAGATCAGCATCC</genome_strand>
        <mrna_strand>AATTCT-GCTTTGCTTCTTGCCCAATTCCTCAAGATAATCTGCCATCCATATCATCTCTTTCCCAGCTTCAGCTATTGCCACAAACTCAGCTTTAGTGGATGAAAGAGAAACATACTTCTAAAGACACGGACATCCAACTTACTGCTTTTCCACCTATGGTGTAAATGTACCCGGACGTACTCTTGCTCGAGTCAACATCCCCACCAAGATCAGCATCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0061A10-VviI8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303634" ref_strand="+" ref_description="SGN-E303634 [cLEY-6-O13]">
      <seq>aagtattagtgagtcctcatcaattcgaggataatatccacatgtcccttatgtcatactcttcatcttattgtcttttatgggattagtcccaagtgttgtatactctaaagtttagatggttcaagtagatgttgtaaagatttaaatgtttcaatgaaagtcttctgcttgtgtaatcaaacaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0061A10-VviI8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0061A10.2" temp_strand="+" temp_description="C00HBa0061A10.2  CU927996.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0061A10 sequenced_by:sanger upload_account_name:uk">
        <position start="66271" stop="67050"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66571" g_stop="66750" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="180" r_length="180" r_score="0.906"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="182" polyA_stop="195"/>
      <MATCH_line gen_id="C00HBa0061A10.2" gen_strand="+" ref_id="SGN-E303634" ref_strand="+">
        <total_alignment_score>0.906</total_alignment_score>
        <cumulative_length_of_scored_exons>180</cumulative_length_of_scored_exons>
        <coverage percentage="0.923" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0061A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E303634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66571" e_stop="66750"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGCATTGGGGAGTTCTCATCGATTCGAGGATAATATCCACATGTCCCTTATGTCATAGTCTTTATTTTATTGTTATGTATGAGATTAGTCCCAAGTGTTGTATACACTAAAGTTTAGATGGTTCAAGTAGATGTTGTAAAGATTTAATATTTTAAATGAAAGTCTTCTGCTTGTGTAAT</genome_strand>
        <mrna_strand>AAGTATTAGTGAGTCCTCATCAATTCGAGGATAATATCCACATGTCCCTTATGTCATACTCTTCATCTTATTGTCTTTTATGGGATTAGTCCCAAGTGTTGTATACTCTAAAGTTTAGATGGTTCAAGTAGATGTTGTAAAGATTTAAATGTTTCAATGAAAGTCTTCTGCTTGTGTAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0061A10-VviI8/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E314133" ref_strand="+" ref_description="SGN-E314133 [cTOA-21-I13]">
      <seq>agaagccaaaaaagagactttcccttctagttttctgccaaacattcatatctctttcctcattagtgaaaaactccacctccttaactcacatgtccactgaatttgagaaacataaaagagtaaaaataaccttaactttcctttttacaactctcctagcttcaaactcaaaatcccttttagtattatctccaattatactctaaaaatggaagcttttcatcatccccctattagctttcactttccctatgcttttcctatcccaacaccaacaaccaattttcttggaactccaaattcatcatcagttaatggaatgatcatcaacacttggatggatagtagaatttggagtagacttccacataggcttattgatagaatcattgcttttctaccaccacctgctttctttagagctagagttgtgtgtaagagattctatggacttatttactctacacattttcttgaattgtacttgcaagtttcacctaagaggaactggttcattttctttaacaaaaagtaccaagaaacaacatttacaagaacgtgatgaatagtagtaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0061A10-VviI8/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0061A10.2" temp_strand="+" temp_description="C00HBa0061A10.2  CU927996.3 htgs_phase:3 submitted_to_sgn_as:C04HBa0061A10 sequenced_by:sanger upload_account_name:uk">
        <position start="137500" stop="138691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="137800" g_stop="138391" g_length="592"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="580" r_length="580" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0061A10.2" gen_strand="+" ref_id="SGN-E314133" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>592</cumulative_length_of_scored_exons>
        <coverage percentage="1.021" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0061A10.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E314133" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="137800" e_stop="138391"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAGCCAAAAAAGAGACTTTCCCTTCTAGTTTTGTTTACTTTTCTGCCAAACAATTCATATCTCTTTCCTCATTAGTGAAAAACACCACCTCCTTAACTCACATGTCCACTGAATTTGAGAAACATCAAAGAGTAAAAATAACCTTAACTTTCCTTTTTACAACTCTCCTAGCTTCAAACTCAAAATCCCTTTTAGTTTTATCTCCAATTATACTCTAAAAATGGAAGCTTTTCATCATCCCCCTATTAGCTTTCACTTTCCCTATGCTTTTCCTATCCCAACACCAACAACCAATTTTCTTGGAACTCCAAATTCATCATCAATTAATGGAATGATCATCAACACTTGGATGTATAGTAGAATTTGGAGTAGACTTCCACATAGGCTTATTGATAGAATCATTGCTTTTCTACCACCACCTGCTTTCTTTAGAGCTAGAGTTGTTTATAAGAGATTCTATGGACTTATTTACTCTACACATTTTCTTGAATTGTACTTGCAAGTTTCACCTAAGAGGAACTGGTTCATTTTCTTTAAACAAAAAGTACCAAGAAACAACATTTACAAGAACATGATGAATAGTAGTGACT</genome_strand>
        <mrna_strand>AGAAGCCAAAAAAGAGACTTTCCCTTCTAG---T-TTT------CTGCCAAAC-ATTCATATCTCTTTCCTCATTAGTGAAAAACTCCACCTCCTTAACTCACATGTCCACTGAATTTGAGAAACATAAAAGAGTAAAAATAACCTTAACTTTCCTTTTTACAACTCTCCTAGCTTCAAACTCAAAATCCCTTTTAGTATTATCTCCAATTATACTCTAAAAATGGAAGCTTTTCATCATCCCCCTATTAGCTTTCACTTTCCCTATGCTTTTCCTATCCCAACACCAACAACCAATTTTCTTGGAACTCCAAATTCATCATCAGTTAATGGAATGATCATCAACACTTGGATGGATAGTAGAATTTGGAGTAGACTTCCACATAGGCTTATTGATAGAATCATTGCTTTTCTACCACCACCTGCTTTCTTTAGAGCTAGAGTTGTGTGTAAGAGATTCTATGGACTTATTTACTCTACACATTTTCTTGAATTGTACTTGCAAGTTTCACCTAAGAGGAACTGGTTCATTTTCTTT-AACAAAAAGTACCAAGAAACAACATTTACAAGAACGTGATGAATAGTAGTAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>3</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="50210" PGL_stop="49993"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="50210" e_stop="49993"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.913"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.913">
            <gDNA_exon_boundary e_start="50210" e_stop="49993" e_length="218"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50210" stop="49993"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E744421" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TCTTCTCGCTCTGCTTCTTGCCCAATTCCTCAAGATAATCTGCCAGCCATATCATCTCTTTCCCAGCTTCAGCTATTGCCACATACTTAGCTTCAGTAGATGAAAGAGAAACACACTTCTGAAGCCTGGACATCCAACTCACTTCTGTTCCACCTATGGTGTAAATGTACCCGGATGTACTCTTGCTCGAGTCAACATCCCCACCAAGATCAGCATCC</gDNA_template>
            <first_frame> S  S  R  S  A  S  C  P  I  P  Q  D  N  L  P  A  I  S  S  L  S  Q  L  Q  L  L  P  H  T  *  L  Q  *  M  K  E  K  H  T  S  E  A  W  T  S  N  S  L  L  F  H  L  W  C  K  C  T  R  M  Y  S  C  S  S  Q  H  P  H  Q  D  Q  H   </first_frame>
            <second_frame>  L  L  A  L  L  L  A  Q  F  L  K  I  I  C  Q  P  Y  H  L  F  P  S  F  S  Y  C  H  I  L  S  F  S  R  *  K  R  N  T  L  L  K  P  G  H  P  T  H  F  C  S  T  Y  G  V  N  V  P  G  C  T  L  A  R  V  N  I  P  T  K  I  S  I  </second_frame>
            <third_frame>   F  S  L  C  F  L  P  N  S  S  R  *  S  A  S  H  I  I  S  F  P  A  S  A  I  A  T  Y  L  A  S  V  D  E  R  E  T  H  F  *  S  L  D  I  Q  L  T  S  V  P  P  M  V  *  M  Y  P  D  V  L  L  L  E  S  T  S  P  P  R  S  A  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0061A10.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="66571" PGL_stop="66750"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66571" e_stop="66750"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.906"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.906">
            <gDNA_exon_boundary e_start="66571" e_stop="66750" e_length="180"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66571" stop="66750"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303634" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGCATTGGGGAGTTCTCATCGATTCGAGGATAATATCCACATGTCCCTTATGTCATAGTCTTTATTTTATTGTTATGTATGAGATTAGTCCCAAGTGTTGTATACACTAAAGTTTAGATGGTTCAAGTAGATGTTGTAAAGATTTAATATTTTAAATGAAAGTCTTCTGCTTGTGTAAT</gDNA_template>
            <first_frame> K  H  W  G  V  L  I  D  S  R  I  I  S  T  C  P  L  C  H  S  L  Y  F  I  V  M  Y  E  I  S  P  K  C  C  I  H  *  S  L  D  G  S  S  R  C  C  K  D  L  I  F  *  M  K  V  F  C  L  C  N </first_frame>
            <second_frame>  S  I  G  E  F  S  S  I  R  G  *  Y  P  H  V  P  Y  V  I  V  F  I  L  L  L  C  M  R  L  V  P  S  V  V  Y  T  K  V  *  M  V  Q  V  D  V  V  K  I  *  Y  F  K  *  K  S  S  A  C  V   </second_frame>
            <third_frame>   A  L  G  S  S  H  R  F  E  D  N  I  H  M  S  L  M  S  *  S  L  F  Y  C  Y  V  *  D  *  S  Q  V  L  Y  T  L  K  F  R  W  F  K  *  M  L  *  R  F  N  I  L  N  E  S  L  L  L  V  *  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0061A10.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="137800" PGL_stop="138391"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="137800" e_stop="138391"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.965"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.965">
            <gDNA_exon_boundary e_start="137800" e_stop="138391" e_length="592"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="137800" stop="138391"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E314133" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAGCCAAAAAAGAGACTTTCCCTTCTAGTTTTGTTTACTTTTCTGCCAAACAATTCATATCTCTTTCCTCATTAGTGAAAAACACCACCTCCTTAACTCACATGTCCACTGAATTTGAGAAACATCAAAGAGTAAAAATAACCTTAACTTTCCTTTTTACAACTCTCCTAGCTTCAAACTCAAAATCCCTTTTAGTTTTATCTCCAATTATACTCTAAAAATGGAAGCTTTTCATCATCCCCCTATTAGCTTTCACTTTCCCTATGCTTTTCCTATCCCAACACCAACAACCAATTTTCTTGGAACTCCAAATTCATCATCAATTAATGGAATGATCATCAACACTTGGATGTATAGTAGAATTTGGAGTAGACTTCCACATAGGCTTATTGATAGAATCATTGCTTTTCTACCACCACCTGCTTTCTTTAGAGCTAGAGTTGTTTATAAGAGATTCTATGGACTTATTTACTCTACACATTTTCTTGAATTGTACTTGCAAGTTTCACCTAAGAGGAACTGGTTCATTTTCTTTAAACAAAAAGTACCAAGAAACAACATTTACAAGAACATGATGAATAGTAGTGACT</gDNA_template>
            <first_frame> R  S  Q  K  R  D  F  P  F  *  F  C  L  L  F  C  Q  T  I  H  I  S  F  L  I  S  E  K  H  H  L  L  N  S  H  V  H  *  I  *  E  T  S  K  S  K  N  N  L  N  F  P  F  Y  N  S  P  S  F  K  L  K  I  P  F  S  F  I  S  N  Y  T  L  K  M  E  A  F  H  H  P  P  I  S  F  H  F  P  Y  A  F  P  I  P  T  P  T  T  N  F  L  G  T  P  N  S  S  S  I  N  G  M  I  I  N  T  W  M  Y  S  R  I  W  S  R  L  P  H  R  L  I  D  R  I  I  A  F  L  P  P  P  A  F  F  R  A  R  V  V  Y  K  R  F  Y  G  L  I  Y  S  T  H  F  L  E  L  Y  L  Q  V  S  P  K  R  N  W  F  I  F  F  K  Q  K  V  P  R  N  N  I  Y  K  N  M  M  N  S  S  D  </first_frame>
            <second_frame>  E  A  K  K  E  T  F  P  S  S  F  V  Y  F  S  A  K  Q  F  I  S  L  S  S  L  V  K  N  T  T  S  L  T  H  M  S  T  E  F  E  K  H  Q  R  V  K  I  T  L  T  F  L  F  T  T  L  L  A  S  N  S  K  S  L  L  V  L  S  P  I  I  L  *  K  W  K  L  F  I  I  P  L  L  A  F  T  F  P  M  L  F  L  S  Q  H  Q  Q  P  I  F  L  E  L  Q  I  H  H  Q  L  M  E  *  S  S  T  L  G  C  I  V  E  F  G  V  D  F  H  I  G  L  L  I  E  S  L  L  F  Y  H  H  L  L  S  L  E  L  E  L  F  I  R  D  S  M  D  L  F  T  L  H  I  F  L  N  C  T  C  K  F  H  L  R  G  T  G  S  F  S  L  N  K  K  Y  Q  E  T  T  F  T  R  T  *  *  I  V  V  T </second_frame>
            <third_frame>   K  P  K  K  R  L  S  L  L  V  L  F  T  F  L  P  N  N  S  Y  L  F  P  H  *  *  K  T  P  P  P  *  L  T  C  P  L  N  L  R  N  I  K  E  *  K  *  P  *  L  S  F  L  Q  L  S  *  L  Q  T  Q  N  P  F  *  F  Y  L  Q  L  Y  S  K  N  G  S  F  S  S  S  P  Y  *  L  S  L  S  L  C  F  S  Y  P  N  T  N  N  Q  F  S  W  N  S  K  F  I  I  N  *  W  N  D  H  Q  H  L  D  V  *  *  N  L  E  *  T  S  T  *  A  Y  *  *  N  H  C  F  S  T  T  T  C  F  L  *  S  *  S  C  L  *  E  I  L  W  T  Y  L  L  Y  T  F  S  *  I  V  L  A  S  F  T  *  E  E  L  V  H  F  L  *  T  K  S  T  K  K  Q  H  L  Q  E  H  D  E  *  *  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0061A10.2" strand="+"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="137920" stop="138390"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>471</number_coding_nucleotides>
                  <number_encoded_amino_acids>157</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ETSKSKNNLNFPFYNSPSFKLKIPFSFISNYTLKMEAFHHPPISFHFPYAFPIPTPTTNFLGTPNSSSINGMIINTWMYSRIWSRLPHRLIDRIIAFLPPPAFFRARVVYKRFYGLIYSTHFLELYLQVSPKRNWFIFFKQKVPRNNIYKNMMNSSD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 90 chains have been computed
$ 
$ memory statistics:
$ 5608 bytes spliced alignments in total
$ 3 spliced alignments have been stored
$ 1869 bytes was the average size of a spliced alignment
$ 7880 bytes predicted gene locations in total
$ 3 predicted gene locations have been stored
$ 2626 bytes was the average size of a predicted gene location
$ 2 megabytes was the average size of the backtrace matrix
$ 108 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 05:24:11
-->
