<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 05:18:37"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347893" ref_strand="+" ref_description="SGN-E347893 [cTOF-31-E22]">
      <seq>ttctgttcagcaataataactacatgtttccagctaccttggaagtcttcaagccagtcataatccttaatgagctgttaaaactgcagtcaatgtgacctcaaccttttgcttttgcagagaaaggacagttgcttaccagatgcttataaattggttctttcgtacaaccaattggatattcttttgttgtgtgaattcctttttaccaaaagttgtgaggaacctcagagattttggttcctcaaaggaggaattcaggaagtcctcagggctttcgtctattggttagaacacaacgcatgatgtgtggattaggtgtacatcacaagtttgaactctgccaccggcagaatcctagtatttaagtggagaagggttaaggtacaggcccattatccaccaaacttcagactgtgcaccagttgtctctcaaaaaatttcagtttcaacgaaaataagagagattttgggagcatacaccttgtaaaatggaaggatatataatttgtgcagttggaaactggtaaagctggccactgggatatcagaaagtgactgcatcatagggactatttgctgtcagtagtctgcttaagctgaaagcattagacccgaacacagcacttgatcaaattgcttctctagctgatgagttatttgcatctgctgttgtatccaagtaagcaacaagct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="+" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="1137" stop="2431"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1437" g_stop="2131" g_length="695"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="696" r_length="696" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="+" ref_id="SGN-E347893" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>695</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347893" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1437" e_stop="2131"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTGTTCAGCAATAATAACTACATGTTTCCAGCTA-CTTGGAAGTCTTCAAGCCAGTCATAATCCTTAATGAGCTGTTACAACTGCAGTCAATGTGACCTCAACCTTTTGCTTTTGCAGAGAAAGGACAGTTGCTTACCAGATGCTTATAAATTGGTTCTTTCGTACAACCAATTGGATATTCTTTTGTTGTGTGAATTCCTTTTTACCAAAAGTTGTGAGGAACCTCAGAGATTTTGGTTCCTCAAAGGAGGAATTCAGGAAGTCCTCAGGGCTTTCGTCTATTGGTTAGAACACAACGCATGATGTGTGGATTAGGTGTACATCACAAGTTTGAACTCTGCCACCGGCAGAATCCTAGTATTTAAGTGGAGAAGGGTTAAGGTACAGGCCCATTATCCACCAAACTTCAGACTGTGCACCAGTTGTCTCTCAAAAAATTTCAGTTTCAACGAAAATAAGAGAGATTTTGGGAGCATACACCTTGTAAAATGGAAGGATATATAATTTGTGCAGTTGGAAACTGGTAAAGCTGGCCACTGGGATATCAGAAAGTGACTGCATCATAGGGACTATTTGCTGTCAGTAGTCTGCTTAAGCTGAAAGCATTAGACCCGAACACAGCACTTGATCAAATTGCTTCTCTAGCTGATGAGTTATTTGCATCTGCTGTTGTATCCAAGTAAGCAACAAGCT</genome_strand>
        <mrna_strand>TTCTGTTCAGCAATAATAACTACATGTTTCCAGCTACCTTGGAAGTCTTCAAGCCAGTCATAATCCTTAATGAGCTGTTAAAACTGCAGTCAATGTGACCTCAACCTTTTGCTTTTGCAGAGAAAGGACAGTTGCTTACCAGATGCTTATAAATTGGTTCTTTCGTACAACCAATTGGATATTCTTTTGTTGTGTGAATTCCTTTTTACCAAAAGTTGTGAGGAACCTCAGAGATTTTGGTTCCTCAAAGGAGGAATTCAGGAAGTCCTCAGGGCTTTCGTCTATTGGTTAGAACACAACGCATGATGTGTGGATTAGGTGTACATCACAAGTTTGAACTCTGCCACCGGCAGAATCCTAGTATTTAAGTGGAGAAGGGTTAAGGTACAGGCCCATTATCCACCAAACTTCAGACTGTGCACCAGTTGTCTCTCAAAAAATTTCAGTTTCAACGAAAATAAGAGAGATTTTGGGAGCATACACCTTGTAAAATGGAAGGATATATAATTTGTGCAGTTGGAAACTGGTAAAGCTGGCCACTGGGATATCAGAAAGTGACTGCATCATAGGGACTATTTGCTGTCAGTAGTCTGCTTAAGCTGAAAGCATTAGACCCGAACACAGCACTTGATCAAATTGCTTCTCTAGCTGATGAGTTATTTGCATCTGCTGTTGTATCCAAGTAAGCAACAAGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370597" ref_strand="+" ref_description="SGN-E370597 [TUS-27-M22](-)">
      <seq>ggacagttgcttaccagatgcttataattggttctttcgtacaaccaattggatattcttttgttgtgtgaattcctttttaccaaaagttgtgaggaacctcagagattttggttcctcaaaggaggaattcaggaagtcctcagggctttcgtctattggttagaacacaacgcatgatgtgtggattaggtgtacatcacaagtttgaactctgccaccggcagaatcctagtatttaagtggagaagggttaaggtacaggcccattatccaccaaacttcagactgtgcaccagttgtctctcaaaaaatttcagtttcaacgaaaataagagagattttgggagcatacaccttgtaaaatggaaggatatataatttgtgcagttggaaactggtaaagctggccactgggatatcagaaagtgactgcatcatagggactatttgctgtcagtagtctgcttaagctgaaagcattagacccgaacacagcacttgatcaaattgcttctctagctgatgagttatttgcatctgctgttgtatccaagtaagcaacaagcttcattaaagtaactgttaaacgacccacagctattgtttgattgtttgtgttcccttaagtagtgatttttcttaagtaggagagtatgtaaatctggtgacttgtacagtttggtatcatgtatgcttgaacataacgtactgatattttgagaaaactaaggacaacttctctaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="+" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="1261" stop="2608"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="1561" g_stop="2308" g_length="748"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="747" r_length="747" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="748" polyA_stop="757"/>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="+" ref_id="SGN-E370597" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E370597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="1561" e_stop="2308"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACAGTTGCTTACCAGATGCTTATAAATTGGTTCTTTCGTACAACCAATTGGATATTCTTTTGTTGTGTGAATTCCTTTTTACCAAAAGTTGTGAGGAACCTCAGAGATTTTGGTTCCTCAAAGGAGGAATTCAGGAAGTCCTCAGGGCTTTCGTCTATTGGTTAGAACACAACGCATGATGTGTGGATTAGGTGTACATCACAAGTTTGAACTCTGCCACCGGCAGAATCCTAGTATTTAAGTGGAGAAGGGTTAAGGTACAGGCCCATTATCCACCAAACTTCAGACTGTGCACCAGTTGTCTCTCAAAAAATTTCAGTTTCAACGAAAATAAGAGAGATTTTGGGAGCATACACCTTGTAAAATGGAAGGATATATAATTTGTGCAGTTGGAAACTGGTAAAGCTGGCCACTGGGATATCAGAAAGTGACTGCATCATAGGGACTATTTGCTGTCAGTAGTCTGCTTAAGCTGAAAGCATTAGACCCGAACACAGCACTTGATCAAATTGCTTCTCTAGCTGATGAGTTATTTGCATCTGCTGTTGTATCCAAGTAAGCAACAAGCTTCATTAAAGTAACTGTTAAACGACCCACAGCTATTGTTTGATTGTTTGTGTTCCCTTAAGTAGTGATTTTTCTTAAGTAGGAGAGTATGTAAATCTGGTGACTTGTACAGTTTGGTATCATGTATGCTTGAACATAACGTACTGATATTTTGAGAAAACTAAGGACAACTTCTCTAA</genome_strand>
        <mrna_strand>GGACAGTTGCTTACCAGATGCTTAT-AATTGGTTCTTTCGTACAACCAATTGGATATTCTTTTGTTGTGTGAATTCCTTTTTACCAAAAGTTGTGAGGAACCTCAGAGATTTTGGTTCCTCAAAGGAGGAATTCAGGAAGTCCTCAGGGCTTTCGTCTATTGGTTAGAACACAACGCATGATGTGTGGATTAGGTGTACATCACAAGTTTGAACTCTGCCACCGGCAGAATCCTAGTATTTAAGTGGAGAAGGGTTAAGGTACAGGCCCATTATCCACCAAACTTCAGACTGTGCACCAGTTGTCTCTCAAAAAATTTCAGTTTCAACGAAAATAAGAGAGATTTTGGGAGCATACACCTTGTAAAATGGAAGGATATATAATTTGTGCAGTTGGAAACTGGTAAAGCTGGCCACTGGGATATCAGAAAGTGACTGCATCATAGGGACTATTTGCTGTCAGTAGTCTGCTTAAGCTGAAAGCATTAGACCCGAACACAGCACTTGATCAAATTGCTTCTCTAGCTGATGAGTTATTTGCATCTGCTGTTGTATCCAAGTAAGCAACAAGCTTCATTAAAGTAACTGTTAAACGACCCACAGCTATTGTTTGATTGTTTGTGTTCCCTTAAGTAGTGATTTTTCTTAAGTAGGAGAGTATGTAAATCTGGTGACTTGTACAGTTTGGTATCATGTATGCTTGAACATAACGTACTGATATTTTGAGAAAACTAAGGACAACTTCTCTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E238490" ref_strand="+" ref_description="SGN-E238490 [cLED-17-K3]">
      <seq>agaaagtagaaagtcattcatttgcagcattcccatggccttatcctcactatcccctccattaacacatatttcttcaacgaaacttcatctctctttcccttgtatcgtaaatcctcatcctcattcccataattataccaacctttctcctctcaataaaaaatggcagaccaacgtttctttcttcccttctttcttcaacaagaagaccaaagaccctacacccattaaacaagagcttcttcaagccattgaacctcttgatcgtggcgctgacgccactcctcaagaccagcagataattgatcagattgcttgcagacttgaagcttgcaatccaacaaaggagcccctcaactcaactctgcttaatggaaaatgggaacttatatacactacatcaaagtctattttacagattcagagacccaagattttgcgatctagattgaattatcaagcaataaatgtagatacacttcgggctcagaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="+" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="14540" stop="20678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14840" g_stop="15152" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="313" r_length="313" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15153" i_stop="15249" i_length="97">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15250" g_stop="15363" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="314" r_stop="427" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15364" i_stop="20306" i_length="4943">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.665" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20307" g_stop="20378" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="499" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="+" ref_id="SGN-E238490" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>499</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E238490" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14840" e_stop="15152"/>
          <exon e_start="15250" e_stop="15363"/>
          <exon e_start="20307" e_stop="20378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGTAGAAAGTCATTCATTTGCAGCATTCCCATGGCCTTATCCTCACTATCCCCTCCATTAACACATATTTCTTCAACGAAACTTCATCTCTCTTTCCCTTGTATCGTAAATCCTCATCCTCATTCCCATAATTATACCAACCTTTCTCCTCTCAATAAAAAATGGCAGACCAACGTTTCTTTCTTCCCTTCTTTCTTCAACAAGAAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCCATTGAACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAGGTTTTGCTTCACCTCATTGCAATTATCCAGTTTAGGTTTAGTTTTCTGACTGATTGTGTGTTTCTTTTAGTTTCTCAACACAATGTTATTTGATTAGATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAACTCTGCTTAATGGAAAATGGGAACTTATATACACTACATCAAAGTCTATTTTACAGATTCAGGTGAAAACTATAACCATCATTCAAGTGTTTTACTGAATGTCATGAAAATTATGCTTCTAGGTCCTTTAATGGAACTGTATACATTGTTAAAATTCGTACCAAGCTGGGTAAAATGTTGAGTTTGTGAATGTCACCATTCAACTGTATATACACATTTTATGAGTTTGTGAGAATCTATACGATGCTTTGAAAGGAAATGGAAATCTGTACAGGAGACGGGGAAGGACATTCAATACATATATCTATAGAGTCTATCAAAATTATAACAACTTTGGCTGCTTTGTATGGATTGAAACATGTCTAGGTCACTAGAAAAATGCAATCATTCTCCCAGAAGTTGTACAAACAAAGGATGGGGAGACATTCCCACCAAAATTCCTCGAGACATTGCCACCAAAATTCCTCAATTTCTGGGAAATCACAGCAGTCTTAGATTTAATCTCTCTTCCCCATGAATATCACATGTTGAGTAGGCTTCCACAATTGGCATCTTTTACCAAGGTTTCTCCCAATGAAACCTGAAATGGTAATGTTGCAGATCTGGATATGAAAAGCTCTCAAGTTATAGCCTAAAGTTTGGTCGAATGCTTCAACAATTCCTTTCATCATAGCACAATCCGGAAGCTATACAAAAATGGTTCATTAGTAGATGGAAAATGTGCTTCACCTTCAAGGTGATACCGGTGAACCATAATCAATTCATTTTTGAGCTTCTATCGAGGAAGGAGGCGGTTATAGCTGGTCATTGGTTTTGGAACGGGAGACGGTTGACTCTTCAATGGTGGTCTTTGATCGCTGGATCAGAACTCGCACCCAAGAAAGAAGAACATCACATGATTAAAGCTTTTGGGATCCCAACACATCAGTATCATCAAAGGCGCGCTTAAGCCCTGAAGCGAGGCTCAAAACATGTTGAGCGCTTGACCTTGCTTTTTGTGCGCTTCAGTGTTGTCATCAAGGTTTTAAGGCAAACTTTTCCTTGATAATGAGCCTCTTATGAAGAAGTGACACTAAACGATTGATATTTCACTTAATCATAAAATAATTCTATTTCTTTGGTCATAAATGTGTCATTCATGATTATAATTATTTGTCTTGGACTAAACATATATAATTGTATCTTTTTCTCCCTTTGCGGCTTTTTTCATTAAAGCCCATGCTTTATTTGAGCTTTGCGCTTAAAGCATCACGGACCTTTGAGCTTTATGCGCTGTTCGCCTTTGATAACACCGCGAACACATGCATGGTCATTAAACAGGTTTAATAACATTTGGGAATTTAAGTGGGGCTTTATGGGAATTGATGAGGACACAAAGAATATGAACCAGTTAACTTGGGCCAGAATATACATAAAGAAAGCCTCCCATAGAGTGTTGCTGTCAAACATTAATTGACATTGATGAAGGAGGATGGAGATTTGAAATCTCAATCACATCGGATATCCATATAAAGATGAGGCCAATTGGAAGAGTGGAAAACATATCTGGAAATGAAACTGGCCCGATGTTTATATTAGGGTGAATAAGGAGATGTGTGATGGAGTCAATACTCGGGTTAGACCGGGTGAGAGGAGACTCTGAGTACTGCAGATGCATTAGGGATCAGGGATCAGGGATCAATTCTTAGCCCTTTTTTTTTTGCCTTGGTGATGGATGAGTTGACGCAATTCAGGAGGAGGTTCCATGGTGTATGTTATTTGCAGACGATATAGTACTGATTGATGAGATACGAGACTGAGTTAATGCTAGGTTGGATGTTTATAGACAAGTTATGGAGTCTAAAGGGTTCAGGTAGAGCAGGTGCAAAATGAAGTTTTTATAGTGCAAATTTAGTGTTGTTTGGATGTAGCAAATGTGGAAGTGACGCTTACAGCATAGACCAGTAAAAAGAGGGTTTTAAGTATCTTGGGTCCATAATCTAGGGTGGTGGGGACATTTAACGATGATGTCACACATTGCATTGGGGCAACATGGATGAAATGAAGGCTTGCCTTTGATGTTCTGTGCGACAAGAAGTACCACCTAAACTTAGAGATAAGTTCTACAGAGTGTGTAAGGGGTGAAGTGCTGACCAATCAAGAACTCATATATTTAGAAGATGCATGTTCCGGATATGAAAATTTTGAGATAAATGTGTGGACATACTAGGAGCGATAAGATTCGAAATGAGATTATCTAGGAGAGGGTGGGAGTGGCCACAAGACGAGGAAAGCTAGTCTGAGATAGTTTGGGCATGTAAAAAGGAGGTGTGCTGCCCTAGTAAGGAGGTGCAATCGGGTGTTGGTTGTACGAGGTATGCAGAGGGGTGAGGTGGACCCAAAAAGTACTGGGGAGAGGTGATCAGATAAGACATGATGGTACTTCATATTATCGTGGAAATGACTCTAGATAGGATGGAGTGGAGGTCACATATTGAGGTAGAAGGTTAGTAGCGGTTAAGTGTTGTCTTGCCTTGCGAAGATTTAGGCGTATTAGTGCATGTCGTATTACTAGTCAAACCTTTCTTGCCATATGTAGTTATTGTTTCTTGTAGACTTTACATAACTTTTTTTATTAACTGCTATGCTTTCTTCATTGTTTCTTCTTTCGTTACTAAGATTTGATGCACTTGAGTCGAGGGTCTTTTGGAAACAATCTCTACCTCCATGAGGAAGTGGTAAGGTCTGCGTATACTCTATCCTCTCTAGACCCCACTTAGTGGAGTTTCACTGGGCATGTTGTTGTTGCTATCCTAAAGTCTAATCAAATCCTTGTCTAAAATCACTATGTTAAGATATGTCATTAGGCCCATATGCCATATCTTAACATGGTATCAGAGCCAGAGATGATGGCCCCATTTAGAAGTGTTCATGCTCCAATTGAGGTCTGAGCGTGCAGGGGAGTGTTAAGACGTCTCACGTCGGTAGAGGGATGGGAATTTGGTCTCCTTATATGGACTTGGACAAACCTCCCCTCATGAGCTAGCTTTTGGGGTTGAGTTAGGTCCAGATGTCATATCTTAACAATCTCAAACTGAGTTTCCATATATCCAAAAATAGTAGTACGATGAAAGAATCCAGAAAATCTGACTTTTATACTCGGAGAATCTTCATCACGATCGCCACGTGCCCACACGACTGCCTACAGGTTGATCGGGACCCAACACGATCATTACCACGCCTTTGGGAAATCCAAAAAAGCCTAGACCTTGACCCCCTATTTACTCTACGCGATTGCGGCAGGGGAGCACACAATTGTGATGCACATCATTTTCCTTAACTTTGATCGTGATAACATTGCCTGTACCAGAAATCAGCATCAGCTGAAATGAAAAATTGTATACGAAACCCCTCAGATCTCAACCTAAACTGTACAAACAAGTCCCAAAATATTAAACCAAATAGGAAGTTCCAAAACATAAAATGGAACACACATGCTCCAAACTAAGGATTGGGTTATCACATAAAATACTTGTTTAAGGCCCATTCTTAATCACTTGCACTATTCTCATGTAATGAACTATCATCTTTATGAGGAGAACACAAGATCCTTCAGATCATTCTGAATTGGACCCTATTTGGTCTAAGTAGTCACCAGAGTCCAGATCAACTTGCCATTGTTACCAATTAATGGCATATGCAGTTTACAATAGAATATTATGGCTGTAGGATAATTATTCACCAATGAATGGTCAGTGTTTTGGAAAGCGAGAAGCGGAAAAAAGCGACGAGGGCTTGCTTCACAGAAGCGAGAAGCGTGAAGTGAAGCGCACACTTTTTTTAAAAAAAAGCTACATTTAGTATAAAAATAAAATAATAATAAATAACTAAATAGAGGTAATATAGTCTTAGATTGAAAGAAATTACATACGCAAAAATACTCATAAGTCATAACATATAAAGCAAAAAAATCAAAAACATAATTAAATCACAAAGATTGAAACTCCTATTCTTCAACAAGGCTGCTAGACTGATCACAAAATTAAAAAAAAAAAAAAGCAAAAGAAGTGAAAAAAAACCCAGAGGCAGCAGTCAGTAATTAGAAACAGAGCAGGCAACAGAGATGAAGAAAAGAAGAGAAGAAGAAGAAAAAACTAGAGAAGTCGAAACTCAGAGAGATAAAGAGATGAAGCACAGGCGAAGATTGTATATTTCAGGAGAAAAGAAACTCATAGAGATGAACTAATAAACATTAGCTAAAAAAGAGATGAACAAAAAGTTACCTGCAGTCTCGGTCGAGGTTGAAGAGAGAGGCAGCCTCAGTCGAGATCGTCAGGAGGGAAAGAAGTATTGTGAAAGAAGAGCCGCGAGGAGAGAAAGAAGGGAAAGAGTCGTGAGGAGAGAGAAGGTTATATTTCAGATTTTTTTAAAAAAAACTAATTTCTTTTTAAAAAAACTAATTGTCGCCTTTTATTTTATTTTATAAAAAGCGCGTTTTATTGCGCTTTTGCCTTTCTTCATCTGAAGCGAGAGCTTTTTTCAGATCGCCTCCCCTCAAGATAAAAAAGCGCACAAGGGTCGCCTCGCTTTGAAGCGCGCTTTAAGCGTGCTTTTTTGCGCTTTTCATAACACTGTAATGGTCATGCTATGTTCATTCTAAGTATGCCAGTTTATATTCATATCTATTGACAGAAACTTAATATTCTTTCTGTTAGCTGAATCAATTTTACTTGTATTGGAAACTCCAATTTTGTAATTGATGAACGGAATTAGTTGTCTCTTCTATTTTACTGTACAAGGCAGTATTTACTAAAGACAAGATTAGTATTGGTATGTGATTGCATGCTCTTTTGCATAGAAAGGTCAGGAAAAGGAAGAGGGTGAAATACCGAGTGCCTAGCACTTTCTAGTTCCCATATCTCGGCTACTGTATGATCAAGTAGCCAGTATTGTGTTGATGTTAATCTTCTTGTTATTTCGAAAAGTTATACAAATGAAGGTACTTATAGCTTAATATTTTGAACAGAGACCCAAGATTTTGCGATCTAGATTGAATTATCAAGCAATAAATGTAGATACACTTCGGGCTCAGAATATG</genome_strand>
        <mrna_strand>AGAAAGTAGAAAGTCATTCATTTGCAGCATTCCCATGGCCTTATCCTCACTATCCCCTCCATTAACACATATTTCTTCAACGAAACTTCATCTCTCTTTCCCTTGTATCGTAAATCCTCATCCTCATTCCCATAATTATACCAACCTTTCTCCTCTCAATAAAAAATGGCAGACCAACGTTTCTTTCTTCCCTTCTTTCTTCAACAAGAAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCCATTGAACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAG.................................................................................................ATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAACTCTGCTTAATGGAAAATGGGAACTTATATACACTACATCAAAGTCTATTTTACAGATTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCCAAGATTTTGCGATCTAGATTGAATTATCAAGCAATAAATGTAGATACACTTCGGGCTCAGAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E367886" ref_strand="+" ref_description="SGN-E367886 [TUS-22-E13]">
      <seq>agaaagtagaaaggcattcatttgcagcattcccatggccctattcttactattcccttcattaacccaaatttttttaaccaaaccttcttttttttttccttggaatggaaaatcctaatcctaattccaataataatcccaacctttttcttttaattaaaaaagggcaaaccaccgtttttttcttcctttcttttttcaccaagaagaccaaagaccctacacccattaaacaagagcttcttcaagccattgaacctcttgatcgtggcgctgacgccactcctcaagaccagcagataattgatcagattgcttgcagacttgaagcttgcaatccaacaaaggagcccctcaactcaactctgcttaatggaaaatgggaacttatatacactacatcaaagtctattttacagattcagagacccaagattttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="+" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="14540" stop="15663"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14840" g_stop="15152" g_length="313"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="314" r_length="314" r_score="0.875"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15153" i_stop="15249" i_length="97">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15250" g_stop="15363" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="315" r_stop="428" r_length="114" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="+" ref_id="SGN-E367886" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>427</cumulative_length_of_scored_exons>
        <coverage percentage="0.964" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E367886" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14840" e_stop="15152"/>
          <exon e_start="15250" e_stop="15363"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAAGTAGAAAGTCATTCATTTGCAGCATTCCCATGGCCTTATCCTCACTATCCCCTCCATTAACACATATTTCTTCAACGAAA-CTTCATCTCTCTTTCCCTTGTATCGTAAATCCTCATCCTCATTCCCATAATTATACCAACCTTTCTCCTCTCAATAAAAAATGGCAGACCAACGTTTCTTTCTTCCCTTCTTTCTTCAACAAGAAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCCATTGAACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAGGTTTTGCTTCACCTCATTGCAATTATCCAGTTTAGGTTTAGTTTTCTGACTGATTGTGTGTTTCTTTTAGTTTCTCAACACAATGTTATTTGATTAGATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAACTCTGCTTAATGGAAAATGGGAACTTATATACACTACATCAAAGTCTATTTTACAGATTCAG</genome_strand>
        <mrna_strand>AGAAAGTAGAAAGGCATTCATTTGCAGCATTCCCATGGCCCTATTCTTACTATTCCCTTCATTAACCCAAATTTTTTTAACCAAACCTTCTTTTTTTTTTCCTTGGAATGGAAAATCCTAATCCTAATTCCAATAATAATCCCAACCTTTTTCTTTTAATTAAAAAAGGGCAAACCACCGTTTTTTTCTTCCTTTCTTTTTTCACCAAGAAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCCATTGAACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAG.................................................................................................ATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAACTCTGCTTAATGGAAAATGGGAACTTATATACACTACATCAAAGTCTATTTTACAGATTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E207848" ref_strand="+" ref_description="SGN-E207848 [cLEC-32-N6]">
      <seq>cattcatttgcagcattcccatggccttatcctcactatcccctccattaacacatatttcttcaacgaaacttcatctctctttcccttgtatcgtaaatcctcatcctcattcccataattataccaacctttctcctctcaataaaaaatggcagaccaacgtttctttcttcccttctttcttcaacaagaagaccaaagaccctacacccattaaacaagagcttcttcaagccattgaacctcttgatcgtggcgctgacgccactcctcaagaccagcagataattgatcagattgcttgcagacttgaagcttgcaatccaacaaaggagcccctcaactcaactctgcttaatggaaaatgggaacttatatacactacatcaaagtctattttacagattcaggtgaaaactataaccatcattcaagtgttttactgaatgtcatgaaaattatgcttctaggtcctttaatggaactgtatacattgttaaaattcgtaccaagctgggtaaaatgttgagtttgtgaatgtcaccattcaactgtatatacacattttatgagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="+" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="14554" stop="15827"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14854" g_stop="15152" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15153" i_stop="15249" i_length="97">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15250" g_stop="15527" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="300" r_stop="577" r_length="278" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="+" ref_id="SGN-E207848" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>577</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E207848" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14854" e_stop="15152"/>
          <exon e_start="15250" e_stop="15527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CATTCATTTGCAGCATTCCCATGGCCTTATCCTCACTATCCCCTCCATTAACACATATTTCTTCAACGAAACTTCATCTCTCTTTCCCTTGTATCGTAAATCCTCATCCTCATTCCCATAATTATACCAACCTTTCTCCTCTCAATAAAAAATGGCAGACCAACGTTTCTTTCTTCCCTTCTTTCTTCAACAAGAAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCCATTGAACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAGGTTTTGCTTCACCTCATTGCAATTATCCAGTTTAGGTTTAGTTTTCTGACTGATTGTGTGTTTCTTTTAGTTTCTCAACACAATGTTATTTGATTAGATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAACTCTGCTTAATGGAAAATGGGAACTTATATACACTACATCAAAGTCTATTTTACAGATTCAGGTGAAAACTATAACCATCATTCAAGTGTTTTACTGAATGTCATGAAAATTATGCTTCTAGGTCCTTTAATGGAACTGTATACATTGTTAAAATTCGTACCAAGCTGGGTAAAATGTTGAGTTTGTGAATGTCACCATTCAACTGTATATACACATTTTATGAGT</genome_strand>
        <mrna_strand>CATTCATTTGCAGCATTCCCATGGCCTTATCCTCACTATCCCCTCCATTAACACATATTTCTTCAACGAAACTTCATCTCTCTTTCCCTTGTATCGTAAATCCTCATCCTCATTCCCATAATTATACCAACCTTTCTCCTCTCAATAAAAAATGGCAGACCAACGTTTCTTTCTTCCCTTCTTTCTTCAACAAGAAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCCATTGAACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAG.................................................................................................ATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAACTCTGCTTAATGGAAAATGGGAACTTATATACACTACATCAAAGTCTATTTTACAGATTCAGGTGAAAACTATAACCATCATTCAAGTGTTTTACTGAATGTCATGAAAATTATGCTTCTAGGTCCTTTAATGGAACTGTATACATTGTTAAAATTCGTACCAAGCTGGGTAAAATGTTGAGTTTGTGAATGTCACCATTCAACTGTATATACACATTTTATGAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E345969" ref_strand="+" ref_description="SGN-E345969 [cTOF-24-A5]">
      <seq>attcatttgcagcattcccatggccttatcctcactatcccctccattaacacatatttcttcaacgaaacttcatctctctttcccttgtatcgtaaatcctcatcctcattcccataattataccaacctttctcctctcaataaaaaatggcagaccaacgtttctttcttcccttctttcttcaacaagaagaccaaagaccctacacccattaaacaagagcttcttcaagccattgaacctcttgatcgtggcgctgacgccactcctcaagaccagcagataattgatcagattgcttgcagacttgaagcttgcaatccaacaaaggagcccctcaactcaactctgcttaatggaaaatgggaacttatatacactacatcaaagtctattttacagattcagagacccaagattttgcgatctagattgaattatcaagcaataaatgtagatacacttcgggctcagaatatggaaggatggcccttcttcaaccaggttactgcagatttgaccccgctgaatgcacaaaaggtggcagtaaagtttgattatttcaaaattgctggactaatacctattaaagctcctggaagagctaaaggcgagcttgaaattacttacttggatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="+" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="14555" stop="22371"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14855" g_stop="15152" g_length="298"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="298" r_length="298" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15153" i_stop="15249" i_length="97">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15250" g_stop="15363" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="299" r_stop="412" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15364" i_stop="20306" i_length="4943">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.665" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20307" g_stop="20402" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="413" r_stop="508" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20403" i_stop="21696" i_length="1294">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21697" g_stop="21771" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="583" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21772" i_stop="22012" i_length="241">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22013" g_stop="22071" g_length="59"/>
          <reference_exon_boundary r_type="cDNA" r_start="584" r_stop="642" r_length="59" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="+" ref_id="SGN-E345969" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E345969" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14855" e_stop="15152"/>
          <exon e_start="15250" e_stop="15363"/>
          <exon e_start="20307" e_stop="20402"/>
          <exon e_start="21697" e_stop="21771"/>
          <exon e_start="22013" e_stop="22071"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTCATTTGCAGCATTCCCATGGCCTTATCCTCACTATCCCCTCCATTAACACATATTTCTTCAACGAAACTTCATCTCTCTTTCCCTTGTATCGTAAATCCTCATCCTCATTCCCATAATTATACCAACCTTTCTCCTCTCAATAAAAAATGGCAGACCAACGTTTCTTTCTTCCCTTCTTTCTTCAACAAGAAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCCATTGAACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAGGTTTTGCTTCACCTCATTGCAATTATCCAGTTTAGGTTTAGTTTTCTGACTGATTGTGTGTTTCTTTTAGTTTCTCAACACAATGTTATTTGATTAGATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAACTCTGCTTAATGGAAAATGGGAACTTATATACACTACATCAAAGTCTATTTTACAGATTCAGGTGAAAACTATAACCATCATTCAAGTGTTTTACTGAATGTCATGAAAATTATGCTTCTAGGTCCTTTAATGGAACTGTATACATTGTTAAAATTCGTACCAAGCTGGGTAAAATGTTGAGTTTGTGAATGTCACCATTCAACTGTATATACACATTTTATGAGTTTGTGAGAATCTATACGATGCTTTGAAAGGAAATGGAAATCTGTACAGGAGACGGGGAAGGACATTCAATACATATATCTATAGAGTCTATCAAAATTATAACAACTTTGGCTGCTTTGTATGGATTGAAACATGTCTAGGTCACTAGAAAAATGCAATCATTCTCCCAGAAGTTGTACAAACAAAGGATGGGGAGACATTCCCACCAAAATTCCTCGAGACATTGCCACCAAAATTCCTCAATTTCTGGGAAATCACAGCAGTCTTAGATTTAATCTCTCTTCCCCATGAATATCACATGTTGAGTAGGCTTCCACAATTGGCATCTTTTACCAAGGTTTCTCCCAATGAAACCTGAAATGGTAATGTTGCAGATCTGGATATGAAAAGCTCTCAAGTTATAGCCTAAAGTTTGGTCGAATGCTTCAACAATTCCTTTCATCATAGCACAATCCGGAAGCTATACAAAAATGGTTCATTAGTAGATGGAAAATGTGCTTCACCTTCAAGGTGATACCGGTGAACCATAATCAATTCATTTTTGAGCTTCTATCGAGGAAGGAGGCGGTTATAGCTGGTCATTGGTTTTGGAACGGGAGACGGTTGACTCTTCAATGGTGGTCTTTGATCGCTGGATCAGAACTCGCACCCAAGAAAGAAGAACATCACATGATTAAAGCTTTTGGGATCCCAACACATCAGTATCATCAAAGGCGCGCTTAAGCCCTGAAGCGAGGCTCAAAACATGTTGAGCGCTTGACCTTGCTTTTTGTGCGCTTCAGTGTTGTCATCAAGGTTTTAAGGCAAACTTTTCCTTGATAATGAGCCTCTTATGAAGAAGTGACACTAAACGATTGATATTTCACTTAATCATAAAATAATTCTATTTCTTTGGTCATAAATGTGTCATTCATGATTATAATTATTTGTCTTGGACTAAACATATATAATTGTATCTTTTTCTCCCTTTGCGGCTTTTTTCATTAAAGCCCATGCTTTATTTGAGCTTTGCGCTTAAAGCATCACGGACCTTTGAGCTTTATGCGCTGTTCGCCTTTGATAACACCGCGAACACATGCATGGTCATTAAACAGGTTTAATAACATTTGGGAATTTAAGTGGGGCTTTATGGGAATTGATGAGGACACAAAGAATATGAACCAGTTAACTTGGGCCAGAATATACATAAAGAAAGCCTCCCATAGAGTGTTGCTGTCAAACATTAATTGACATTGATGAAGGAGGATGGAGATTTGAAATCTCAATCACATCGGATATCCATATAAAGATGAGGCCAATTGGAAGAGTGGAAAACATATCTGGAAATGAAACTGGCCCGATGTTTATATTAGGGTGAATAAGGAGATGTGTGATGGAGTCAATACTCGGGTTAGACCGGGTGAGAGGAGACTCTGAGTACTGCAGATGCATTAGGGATCAGGGATCAGGGATCAATTCTTAGCCCTTTTTTTTTTGCCTTGGTGATGGATGAGTTGACGCAATTCAGGAGGAGGTTCCATGGTGTATGTTATTTGCAGACGATATAGTACTGATTGATGAGATACGAGACTGAGTTAATGCTAGGTTGGATGTTTATAGACAAGTTATGGAGTCTAAAGGGTTCAGGTAGAGCAGGTGCAAAATGAAGTTTTTATAGTGCAAATTTAGTGTTGTTTGGATGTAGCAAATGTGGAAGTGACGCTTACAGCATAGACCAGTAAAAAGAGGGTTTTAAGTATCTTGGGTCCATAATCTAGGGTGGTGGGGACATTTAACGATGATGTCACACATTGCATTGGGGCAACATGGATGAAATGAAGGCTTGCCTTTGATGTTCTGTGCGACAAGAAGTACCACCTAAACTTAGAGATAAGTTCTACAGAGTGTGTAAGGGGTGAAGTGCTGACCAATCAAGAACTCATATATTTAGAAGATGCATGTTCCGGATATGAAAATTTTGAGATAAATGTGTGGACATACTAGGAGCGATAAGATTCGAAATGAGATTATCTAGGAGAGGGTGGGAGTGGCCACAAGACGAGGAAAGCTAGTCTGAGATAGTTTGGGCATGTAAAAAGGAGGTGTGCTGCCCTAGTAAGGAGGTGCAATCGGGTGTTGGTTGTACGAGGTATGCAGAGGGGTGAGGTGGACCCAAAAAGTACTGGGGAGAGGTGATCAGATAAGACATGATGGTACTTCATATTATCGTGGAAATGACTCTAGATAGGATGGAGTGGAGGTCACATATTGAGGTAGAAGGTTAGTAGCGGTTAAGTGTTGTCTTGCCTTGCGAAGATTTAGGCGTATTAGTGCATGTCGTATTACTAGTCAAACCTTTCTTGCCATATGTAGTTATTGTTTCTTGTAGACTTTACATAACTTTTTTTATTAACTGCTATGCTTTCTTCATTGTTTCTTCTTTCGTTACTAAGATTTGATGCACTTGAGTCGAGGGTCTTTTGGAAACAATCTCTACCTCCATGAGGAAGTGGTAAGGTCTGCGTATACTCTATCCTCTCTAGACCCCACTTAGTGGAGTTTCACTGGGCATGTTGTTGTTGCTATCCTAAAGTCTAATCAAATCCTTGTCTAAAATCACTATGTTAAGATATGTCATTAGGCCCATATGCCATATCTTAACATGGTATCAGAGCCAGAGATGATGGCCCCATTTAGAAGTGTTCATGCTCCAATTGAGGTCTGAGCGTGCAGGGGAGTGTTAAGACGTCTCACGTCGGTAGAGGGATGGGAATTTGGTCTCCTTATATGGACTTGGACAAACCTCCCCTCATGAGCTAGCTTTTGGGGTTGAGTTAGGTCCAGATGTCATATCTTAACAATCTCAAACTGAGTTTCCATATATCCAAAAATAGTAGTACGATGAAAGAATCCAGAAAATCTGACTTTTATACTCGGAGAATCTTCATCACGATCGCCACGTGCCCACACGACTGCCTACAGGTTGATCGGGACCCAACACGATCATTACCACGCCTTTGGGAAATCCAAAAAAGCCTAGACCTTGACCCCCTATTTACTCTACGCGATTGCGGCAGGGGAGCACACAATTGTGATGCACATCATTTTCCTTAACTTTGATCGTGATAACATTGCCTGTACCAGAAATCAGCATCAGCTGAAATGAAAAATTGTATACGAAACCCCTCAGATCTCAACCTAAACTGTACAAACAAGTCCCAAAATATTAAACCAAATAGGAAGTTCCAAAACATAAAATGGAACACACATGCTCCAAACTAAGGATTGGGTTATCACATAAAATACTTGTTTAAGGCCCATTCTTAATCACTTGCACTATTCTCATGTAATGAACTATCATCTTTATGAGGAGAACACAAGATCCTTCAGATCATTCTGAATTGGACCCTATTTGGTCTAAGTAGTCACCAGAGTCCAGATCAACTTGCCATTGTTACCAATTAATGGCATATGCAGTTTACAATAGAATATTATGGCTGTAGGATAATTATTCACCAATGAATGGTCAGTGTTTTGGAAAGCGAGAAGCGGAAAAAAGCGACGAGGGCTTGCTTCACAGAAGCGAGAAGCGTGAAGTGAAGCGCACACTTTTTTTAAAAAAAAGCTACATTTAGTATAAAAATAAAATAATAATAAATAACTAAATAGAGGTAATATAGTCTTAGATTGAAAGAAATTACATACGCAAAAATACTCATAAGTCATAACATATAAAGCAAAAAAATCAAAAACATAATTAAATCACAAAGATTGAAACTCCTATTCTTCAACAAGGCTGCTAGACTGATCACAAAATTAAAAAAAAAAAAAAGCAAAAGAAGTGAAAAAAAACCCAGAGGCAGCAGTCAGTAATTAGAAACAGAGCAGGCAACAGAGATGAAGAAAAGAAGAGAAGAAGAAGAAAAAACTAGAGAAGTCGAAACTCAGAGAGATAAAGAGATGAAGCACAGGCGAAGATTGTATATTTCAGGAGAAAAGAAACTCATAGAGATGAACTAATAAACATTAGCTAAAAAAGAGATGAACAAAAAGTTACCTGCAGTCTCGGTCGAGGTTGAAGAGAGAGGCAGCCTCAGTCGAGATCGTCAGGAGGGAAAGAAGTATTGTGAAAGAAGAGCCGCGAGGAGAGAAAGAAGGGAAAGAGTCGTGAGGAGAGAGAAGGTTATATTTCAGATTTTTTTAAAAAAAACTAATTTCTTTTTAAAAAAACTAATTGTCGCCTTTTATTTTATTTTATAAAAAGCGCGTTTTATTGCGCTTTTGCCTTTCTTCATCTGAAGCGAGAGCTTTTTTCAGATCGCCTCCCCTCAAGATAAAAAAGCGCACAAGGGTCGCCTCGCTTTGAAGCGCGCTTTAAGCGTGCTTTTTTGCGCTTTTCATAACACTGTAATGGTCATGCTATGTTCATTCTAAGTATGCCAGTTTATATTCATATCTATTGACAGAAACTTAATATTCTTTCTGTTAGCTGAATCAATTTTACTTGTATTGGAAACTCCAATTTTGTAATTGATGAACGGAATTAGTTGTCTCTTCTATTTTACTGTACAAGGCAGTATTTACTAAAGACAAGATTAGTATTGGTATGTGATTGCATGCTCTTTTGCATAGAAAGGTCAGGAAAAGGAAGAGGGTGAAATACCGAGTGCCTAGCACTTTCTAGTTCCCATATCTCGGCTACTGTATGATCAAGTAGCCAGTATTGTGTTGATGTTAATCTTCTTGTTATTTCGAAAAGTTATACAAATGAAGGTACTTATAGCTTAATATTTTGAACAGAGACCCAAGATTTTGCGATCTAGATTGAATTATCAAGCAATAAATGTAGATACACTTCGGGCTCAGAATATGGAAGGATGGCCCTTCTTCAACCAGGTACTTGATTTGGAATCAATTTTTTTTTTGACATGTCCAACAATGTTATATTGAAATTTATTGAGAAGTTAACTCCCTTATTTACTATTACTAGTAATCGTGGAAATACTCTCTATTTTAGTATCCTTCCCCTTTGTTGGATTTTTGTTTCTGCGAAATGTTCTATTAAGTGACCAAAGTCCAGGAACTTGCAGTTCCTTTTTTTTGTTCTTTTTTTTTTTTGTCTTTCAGACAAACGTGAAACTAGAATTCATGGTTGACTTATGGGGAAAAAAGGAGAATTTTTAGATTTCCTTGTAATTCAGACAGTGATACTTTAAATTTGATTTTCCCCTGAAATTTGGTGATAGAACAAACCACAAATGGAAGTAACTTTTGAGTTTGAGCTTCCATATCTGATATTTTCGGAATCCTAATAAAAATTATCCATAGATCTTTATGAACTAAAGGATGGAACTTCTCCAGGAAGAAGTCTCTAGAGAAAAAAAAGGGTTTAAGATTTAATATAAAATGAATGTAATTATGGTATTAGAAACATAGTGAAAAGCATAAAGAAGAAGAGGAGAGTAATATTCTAGAGATCCCATATACTGTTCCTTCAAACAACCTACACTTTTCTCATGTTTTAAGAGACTTGGAAAGCTTCAAACCACTAATTTTACCATAAAACCAAATTATACATCTAATTTATTGTAGATATGCACAGGATTTTTTTTTGATCAATAATGTGTAGTTCTGTTGAATATACTTTGCTAATTTGTTGTTTCCAGTTAGTTGCCTTTAATGCCATATTCCCACACACACTTCGGATTACATTTTCCTTCAGCTGTGTTACAGTAAATTTTGATTGTACTGTTCCAATCTGTTCGTGTATTATGTCTATTAGGATGAATCTGAAATTCAGTAGAAATTTAGCCTTCTATGGATAATCATCCTCAACTAACCTCCCCCCCCCCCCCCCCCAACCCCAAAACCCCCAACAAATCTCTTTCCTACATAAGGTTTAAGAGCACCCTTCATATCACAGTGACTTAACCTTTGTCCAATTGAAAACGATAACACGATGGATAGGTCACTGTAAGTTCTAACAAGTGGATAAAAATGGCATGTTTCCTTGCACATTTTCTCTATAGAAGAGACTAGAGAGAAAGCATATTAATTAACTAGAAAGCAAACCCAAAAGTTAAATCATTGTTGGCCTAGCAAAATAAGTTCATATATCTTCTCATCTATTTCTTTCTTTAGTAGCATATTTCCAAATTTTATGATTTACATCTTCAATCATCTCCTGAAGGTTACTGCAGATTTGACCCCGCTGAATGCACAAAAGGTGGCAGTAAAGTTTGATTATTTCAAAATTGCTGGACTAGTAAGTTCCACATTCTTTACTCATCACTTTACAACAAAGGGTTATTTCGCTTGTAATGCATTCTTACACTTAACTGTTCCAAATACAAAAATAAAAAATAAAAAAATAGAATGAGTTGGTAATGTAATTTCATGACAGTTTGTGCGGGTGTACATAACATGAGAGCACAAATATGGATCAGTATTTTTTAATCTTTTTTCTAACCTTTTCTTTTCTTCGTCTCTTCGTTGTTGGCTGGCAGATACCTATTAAAGCTCCTGGAAGAGCTAAAGGCGAGCTTGAAATTACTTACTTGGATGA</genome_strand>
        <mrna_strand>ATTCATTTGCAGCATTCCCATGGCCTTATCCTCACTATCCCCTCCATTAACACATATTTCTTCAACGAAACTTCATCTCTCTTTCCCTTGTATCGTAAATCCTCATCCTCATTCCCATAATTATACCAACCTTTCTCCTCTCAATAAAAAATGGCAGACCAACGTTTCTTTCTTCCCTTCTTTCTTCAACAAGAAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCCATTGAACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAG.................................................................................................ATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAACTCTGCTTAATGGAAAATGGGAACTTATATACACTACATCAAAGTCTATTTTACAGATTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCCAAGATTTTGCGATCTAGATTGAATTATCAAGCAATAAATGTAGATACACTTCGGGCTCAGAATATGGAAGGATGGCCCTTCTTCAACCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTGCAGATTTGACCCCGCTGAATGCACAAAAGGTGGCAGTAAAGTTTGATTATTTCAAAATTGCTGGACTA.................................................................................................................................................................................................................................................ATACCTATTAAAGCTCCTGGAAGAGCTAAAGGCGAGCTTGAAATTACTTACTTGGATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E379509" ref_strand="+" ref_description="SGN-E379509 [TUS-3-E17]">
      <seq>ttcatttgcagcattcccatggccttatcctcactatcccctccattaccacatatttcttcaacgaaacttcatctctctttcccttgtatcgtaaatcctcatcctcattcccataattataccaacctttctcctctcaataaaaaatggcagaccaacgtttctttcttcccttctttcttcaacaagaagaccaaagaccctacacccattaaacaagagcttcttcaagccattgaacctcttgatcgtggcgctgacgccactcctcaagaccagcagataattgatcagattgcttgcagacttgaagcttgcaatccaacaaaggagcccctcaactcaactctgcttaatggaaaatgggaacttatatacactacatcaaagtctattttacagattcaggtgaaaactataaccatcattcaagtgttttactgaatgtcatgaaaattatgcttctaggtcctttaatggaactgtatacattgttaaaattcgtaccaagctgggtaaaatgttgagtttgtgaatgtcaccattcaactgtatatacacattttatgagtttgtgagaatctatacgatgctttgaaaggaaatggaaatctgtacaggagacggggaaggacattcaatacatatatctatagagtctatcaaaattataacaactttggctgctttgtatggattgaaacatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="+" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="14556" stop="15965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14856" g_stop="15152" g_length="297"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="297" r_length="297" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15153" i_stop="15249" i_length="97">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15250" g_stop="15665" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="298" r_stop="713" r_length="416" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="+" ref_id="SGN-E379509" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>713</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E379509" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14856" e_stop="15152"/>
          <exon e_start="15250" e_stop="15665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATTTGCAGCATTCCCATGGCCTTATCCTCACTATCCCCTCCATTAACACATATTTCTTCAACGAAACTTCATCTCTCTTTCCCTTGTATCGTAAATCCTCATCCTCATTCCCATAATTATACCAACCTTTCTCCTCTCAATAAAAAATGGCAGACCAACGTTTCTTTCTTCCCTTCTTTCTTCAACAAGAAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCCATTGAACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAGGTTTTGCTTCACCTCATTGCAATTATCCAGTTTAGGTTTAGTTTTCTGACTGATTGTGTGTTTCTTTTAGTTTCTCAACACAATGTTATTTGATTAGATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAACTCTGCTTAATGGAAAATGGGAACTTATATACACTACATCAAAGTCTATTTTACAGATTCAGGTGAAAACTATAACCATCATTCAAGTGTTTTACTGAATGTCATGAAAATTATGCTTCTAGGTCCTTTAATGGAACTGTATACATTGTTAAAATTCGTACCAAGCTGGGTAAAATGTTGAGTTTGTGAATGTCACCATTCAACTGTATATACACATTTTATGAGTTTGTGAGAATCTATACGATGCTTTGAAAGGAAATGGAAATCTGTACAGGAGACGGGGAAGGACATTCAATACATATATCTATAGAGTCTATCAAAATTATAACAACTTTGGCTGCTTTGTATGGATTGAAACATGTCT</genome_strand>
        <mrna_strand>TTCATTTGCAGCATTCCCATGGCCTTATCCTCACTATCCCCTCCATTACCACATATTTCTTCAACGAAACTTCATCTCTCTTTCCCTTGTATCGTAAATCCTCATCCTCATTCCCATAATTATACCAACCTTTCTCCTCTCAATAAAAAATGGCAGACCAACGTTTCTTTCTTCCCTTCTTTCTTCAACAAGAAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCCATTGAACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAG.................................................................................................ATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAACTCTGCTTAATGGAAAATGGGAACTTATATACACTACATCAAAGTCTATTTTACAGATTCAGGTGAAAACTATAACCATCATTCAAGTGTTTTACTGAATGTCATGAAAATTATGCTTCTAGGTCCTTTAATGGAACTGTATACATTGTTAAAATTCGTACCAAGCTGGGTAAAATGTTGAGTTTGTGAATGTCACCATTCAACTGTATATACACATTTTATGAGTTTGTGAGAATCTATACGATGCTTTGAAAGGAAATGGAAATCTGTACAGGAGACGGGGAAGGACATTCAATACATATATCTATAGAGTCTATCAAAATTATAACAACTTTGGCTGCTTTGTATGGATTGAAACATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E209459" ref_strand="+" ref_description="SGN-E209459 [cLEC-54-E11]">
      <seq>tcactatcccctccattaacacatatttcttcaacgaaacttcatctctctttcccttgtatcgtaaatcctcatcctcattcccataattataccaacctttctcctctcaataaaaaatggcagaccaacgtttctttcttcccttctttcttcaacaagaagaccaaagaccctacacccattaaacaagagcttcttcaagccattgaacctcttgatcgtggcgctgacgccactcctcaagaccagcagataattgatcagattgcttgcagacttgaagcttgcaatccaacaaaggagcccctcaactcaactctgcttaatggaaaatgggaacttatatacactacatcaaagtctattttacagattcagagacccaagaatttgcgatctagattgaatatcaagcaataaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="+" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="14586" stop="20651"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14886" g_stop="15152" g_length="267"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="267" r_length="267" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15153" i_stop="15249" i_length="97">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15250" g_stop="15363" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="268" r_stop="381" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15364" i_stop="20306" i_length="4943">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.665" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20307" g_stop="20351" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="382" r_stop="425" r_length="44" r_score="0.956"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="+" ref_id="SGN-E209459" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>426</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E209459" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14886" e_stop="15152"/>
          <exon e_start="15250" e_stop="15363"/>
          <exon e_start="20307" e_stop="20351"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCACTATCCCCTCCATTAACACATATTTCTTCAACGAAACTTCATCTCTCTTTCCCTTGTATCGTAAATCCTCATCCTCATTCCCATAATTATACCAACCTTTCTCCTCTCAATAAAAAATGGCAGACCAACGTTTCTTTCTTCCCTTCTTTCTTCAACAAGAAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCCATTGAACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAGGTTTTGCTTCACCTCATTGCAATTATCCAGTTTAGGTTTAGTTTTCTGACTGATTGTGTGTTTCTTTTAGTTTCTCAACACAATGTTATTTGATTAGATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAACTCTGCTTAATGGAAAATGGGAACTTATATACACTACATCAAAGTCTATTTTACAGATTCAGGTGAAAACTATAACCATCATTCAAGTGTTTTACTGAATGTCATGAAAATTATGCTTCTAGGTCCTTTAATGGAACTGTATACATTGTTAAAATTCGTACCAAGCTGGGTAAAATGTTGAGTTTGTGAATGTCACCATTCAACTGTATATACACATTTTATGAGTTTGTGAGAATCTATACGATGCTTTGAAAGGAAATGGAAATCTGTACAGGAGACGGGGAAGGACATTCAATACATATATCTATAGAGTCTATCAAAATTATAACAACTTTGGCTGCTTTGTATGGATTGAAACATGTCTAGGTCACTAGAAAAATGCAATCATTCTCCCAGAAGTTGTACAAACAAAGGATGGGGAGACATTCCCACCAAAATTCCTCGAGACATTGCCACCAAAATTCCTCAATTTCTGGGAAATCACAGCAGTCTTAGATTTAATCTCTCTTCCCCATGAATATCACATGTTGAGTAGGCTTCCACAATTGGCATCTTTTACCAAGGTTTCTCCCAATGAAACCTGAAATGGTAATGTTGCAGATCTGGATATGAAAAGCTCTCAAGTTATAGCCTAAAGTTTGGTCGAATGCTTCAACAATTCCTTTCATCATAGCACAATCCGGAAGCTATACAAAAATGGTTCATTAGTAGATGGAAAATGTGCTTCACCTTCAAGGTGATACCGGTGAACCATAATCAATTCATTTTTGAGCTTCTATCGAGGAAGGAGGCGGTTATAGCTGGTCATTGGTTTTGGAACGGGAGACGGTTGACTCTTCAATGGTGGTCTTTGATCGCTGGATCAGAACTCGCACCCAAGAAAGAAGAACATCACATGATTAAAGCTTTTGGGATCCCAACACATCAGTATCATCAAAGGCGCGCTTAAGCCCTGAAGCGAGGCTCAAAACATGTTGAGCGCTTGACCTTGCTTTTTGTGCGCTTCAGTGTTGTCATCAAGGTTTTAAGGCAAACTTTTCCTTGATAATGAGCCTCTTATGAAGAAGTGACACTAAACGATTGATATTTCACTTAATCATAAAATAATTCTATTTCTTTGGTCATAAATGTGTCATTCATGATTATAATTATTTGTCTTGGACTAAACATATATAATTGTATCTTTTTCTCCCTTTGCGGCTTTTTTCATTAAAGCCCATGCTTTATTTGAGCTTTGCGCTTAAAGCATCACGGACCTTTGAGCTTTATGCGCTGTTCGCCTTTGATAACACCGCGAACACATGCATGGTCATTAAACAGGTTTAATAACATTTGGGAATTTAAGTGGGGCTTTATGGGAATTGATGAGGACACAAAGAATATGAACCAGTTAACTTGGGCCAGAATATACATAAAGAAAGCCTCCCATAGAGTGTTGCTGTCAAACATTAATTGACATTGATGAAGGAGGATGGAGATTTGAAATCTCAATCACATCGGATATCCATATAAAGATGAGGCCAATTGGAAGAGTGGAAAACATATCTGGAAATGAAACTGGCCCGATGTTTATATTAGGGTGAATAAGGAGATGTGTGATGGAGTCAATACTCGGGTTAGACCGGGTGAGAGGAGACTCTGAGTACTGCAGATGCATTAGGGATCAGGGATCAGGGATCAATTCTTAGCCCTTTTTTTTTTGCCTTGGTGATGGATGAGTTGACGCAATTCAGGAGGAGGTTCCATGGTGTATGTTATTTGCAGACGATATAGTACTGATTGATGAGATACGAGACTGAGTTAATGCTAGGTTGGATGTTTATAGACAAGTTATGGAGTCTAAAGGGTTCAGGTAGAGCAGGTGCAAAATGAAGTTTTTATAGTGCAAATTTAGTGTTGTTTGGATGTAGCAAATGTGGAAGTGACGCTTACAGCATAGACCAGTAAAAAGAGGGTTTTAAGTATCTTGGGTCCATAATCTAGGGTGGTGGGGACATTTAACGATGATGTCACACATTGCATTGGGGCAACATGGATGAAATGAAGGCTTGCCTTTGATGTTCTGTGCGACAAGAAGTACCACCTAAACTTAGAGATAAGTTCTACAGAGTGTGTAAGGGGTGAAGTGCTGACCAATCAAGAACTCATATATTTAGAAGATGCATGTTCCGGATATGAAAATTTTGAGATAAATGTGTGGACATACTAGGAGCGATAAGATTCGAAATGAGATTATCTAGGAGAGGGTGGGAGTGGCCACAAGACGAGGAAAGCTAGTCTGAGATAGTTTGGGCATGTAAAAAGGAGGTGTGCTGCCCTAGTAAGGAGGTGCAATCGGGTGTTGGTTGTACGAGGTATGCAGAGGGGTGAGGTGGACCCAAAAAGTACTGGGGAGAGGTGATCAGATAAGACATGATGGTACTTCATATTATCGTGGAAATGACTCTAGATAGGATGGAGTGGAGGTCACATATTGAGGTAGAAGGTTAGTAGCGGTTAAGTGTTGTCTTGCCTTGCGAAGATTTAGGCGTATTAGTGCATGTCGTATTACTAGTCAAACCTTTCTTGCCATATGTAGTTATTGTTTCTTGTAGACTTTACATAACTTTTTTTATTAACTGCTATGCTTTCTTCATTGTTTCTTCTTTCGTTACTAAGATTTGATGCACTTGAGTCGAGGGTCTTTTGGAAACAATCTCTACCTCCATGAGGAAGTGGTAAGGTCTGCGTATACTCTATCCTCTCTAGACCCCACTTAGTGGAGTTTCACTGGGCATGTTGTTGTTGCTATCCTAAAGTCTAATCAAATCCTTGTCTAAAATCACTATGTTAAGATATGTCATTAGGCCCATATGCCATATCTTAACATGGTATCAGAGCCAGAGATGATGGCCCCATTTAGAAGTGTTCATGCTCCAATTGAGGTCTGAGCGTGCAGGGGAGTGTTAAGACGTCTCACGTCGGTAGAGGGATGGGAATTTGGTCTCCTTATATGGACTTGGACAAACCTCCCCTCATGAGCTAGCTTTTGGGGTTGAGTTAGGTCCAGATGTCATATCTTAACAATCTCAAACTGAGTTTCCATATATCCAAAAATAGTAGTACGATGAAAGAATCCAGAAAATCTGACTTTTATACTCGGAGAATCTTCATCACGATCGCCACGTGCCCACACGACTGCCTACAGGTTGATCGGGACCCAACACGATCATTACCACGCCTTTGGGAAATCCAAAAAAGCCTAGACCTTGACCCCCTATTTACTCTACGCGATTGCGGCAGGGGAGCACACAATTGTGATGCACATCATTTTCCTTAACTTTGATCGTGATAACATTGCCTGTACCAGAAATCAGCATCAGCTGAAATGAAAAATTGTATACGAAACCCCTCAGATCTCAACCTAAACTGTACAAACAAGTCCCAAAATATTAAACCAAATAGGAAGTTCCAAAACATAAAATGGAACACACATGCTCCAAACTAAGGATTGGGTTATCACATAAAATACTTGTTTAAGGCCCATTCTTAATCACTTGCACTATTCTCATGTAATGAACTATCATCTTTATGAGGAGAACACAAGATCCTTCAGATCATTCTGAATTGGACCCTATTTGGTCTAAGTAGTCACCAGAGTCCAGATCAACTTGCCATTGTTACCAATTAATGGCATATGCAGTTTACAATAGAATATTATGGCTGTAGGATAATTATTCACCAATGAATGGTCAGTGTTTTGGAAAGCGAGAAGCGGAAAAAAGCGACGAGGGCTTGCTTCACAGAAGCGAGAAGCGTGAAGTGAAGCGCACACTTTTTTTAAAAAAAAGCTACATTTAGTATAAAAATAAAATAATAATAAATAACTAAATAGAGGTAATATAGTCTTAGATTGAAAGAAATTACATACGCAAAAATACTCATAAGTCATAACATATAAAGCAAAAAAATCAAAAACATAATTAAATCACAAAGATTGAAACTCCTATTCTTCAACAAGGCTGCTAGACTGATCACAAAATTAAAAAAAAAAAAAAGCAAAAGAAGTGAAAAAAAACCCAGAGGCAGCAGTCAGTAATTAGAAACAGAGCAGGCAACAGAGATGAAGAAAAGAAGAGAAGAAGAAGAAAAAACTAGAGAAGTCGAAACTCAGAGAGATAAAGAGATGAAGCACAGGCGAAGATTGTATATTTCAGGAGAAAAGAAACTCATAGAGATGAACTAATAAACATTAGCTAAAAAAGAGATGAACAAAAAGTTACCTGCAGTCTCGGTCGAGGTTGAAGAGAGAGGCAGCCTCAGTCGAGATCGTCAGGAGGGAAAGAAGTATTGTGAAAGAAGAGCCGCGAGGAGAGAAAGAAGGGAAAGAGTCGTGAGGAGAGAGAAGGTTATATTTCAGATTTTTTTAAAAAAAACTAATTTCTTTTTAAAAAAACTAATTGTCGCCTTTTATTTTATTTTATAAAAAGCGCGTTTTATTGCGCTTTTGCCTTTCTTCATCTGAAGCGAGAGCTTTTTTCAGATCGCCTCCCCTCAAGATAAAAAAGCGCACAAGGGTCGCCTCGCTTTGAAGCGCGCTTTAAGCGTGCTTTTTTGCGCTTTTCATAACACTGTAATGGTCATGCTATGTTCATTCTAAGTATGCCAGTTTATATTCATATCTATTGACAGAAACTTAATATTCTTTCTGTTAGCTGAATCAATTTTACTTGTATTGGAAACTCCAATTTTGTAATTGATGAACGGAATTAGTTGTCTCTTCTATTTTACTGTACAAGGCAGTATTTACTAAAGACAAGATTAGTATTGGTATGTGATTGCATGCTCTTTTGCATAGAAAGGTCAGGAAAAGGAAGAGGGTGAAATACCGAGTGCCTAGCACTTTCTAGTTCCCATATCTCGGCTACTGTATGATCAAGTAGCCAGTATTGTGTTGATGTTAATCTTCTTGTTATTTCGAAAAGTTATACAAATGAAGGTACTTATAGCTTAATATTTTGAACAGAGACCCAAGATTTTGCGATCTAGATTGAATTATCAAGCAATAAAT</genome_strand>
        <mrna_strand>TCACTATCCCCTCCATTAACACATATTTCTTCAACGAAACTTCATCTCTCTTTCCCTTGTATCGTAAATCCTCATCCTCATTCCCATAATTATACCAACCTTTCTCCTCTCAATAAAAAATGGCAGACCAACGTTTCTTTCTTCCCTTCTTTCTTCAACAAGAAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCCATTGAACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAG.................................................................................................ATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAACTCTGCTTAATGGAAAATGGGAACTTATATACACTACATCAAAGTCTATTTTACAGATTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCCAAGAATTTGCGATCTAGATTGAA-TATCAAGCAATAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E699666" ref_strand="+" ref_description="SGN-E699666 [FA10DD11]">
      <seq>cttcaacgaaacttcatctctctttcccttgtatcgtaaatcctcatcctcattcccataattataccaacctttctcctctcaataaaaaatggcagaccaacgtttctttcttcccttctttcttcaacaagaagaccaaagaccctacacccattaaacaagagcttcttcaagccattgaacctcttgatcgtggcgctgacgccactcctcaagaccagcagataattgatcaggttttgcttcacctcattgcaattatccagtttaggtttagttttctgactgattgtgtgtttcttttagtttctcaacacaatgttatttgattagattgcttgcagacttgaagcttgcaatccaacaaaggagcccctcaactcaactctgcttaatggaaaatgggaacttatatacactacatcaaagtctattttacagattcaggtgaaaactataaccatcattcaagtgttttactgaatgtcatgaaaattatgcttctaggtcctttaatggaactgtatacattgttaaaattcgtaccaagctgggtaaaatgttgagtttgtgaatgtcaccattcaactgtatatacacattttatgagtttgtgagaatctatacgatgctttgaaaggaaatggaaatctgtacaggagacggggaaggacattcaatacatatatctatagagtctgtcaaaattataacaactttggctgctttgtatggattgaaacatgtctaggtcactagaaaaatgcaatcattctccccaaagttgtacaaaccaaggatggggagacattcccaccaaaattcctcgagacattgccaccaaaattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="+" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="14614" stop="16066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14914" g_stop="15766" g_length="853"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="853" r_length="853" r_score="0.995"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="+" ref_id="SGN-E699666" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>853</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E699666" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14914" e_stop="15766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTCAACGAAACTTCATCTCTCTTTCCCTTGTATCGTAAATCCTCATCCTCATTCCCATAATTATACCAACCTTTCTCCTCTCAATAAAAAATGGCAGACCAACGTTTCTTTCTTCCCTTCTTTCTTCAACAAGAAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCCATTGAACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAGGTTTTGCTTCACCTCATTGCAATTATCCAGTTTAGGTTTAGTTTTCTGACTGATTGTGTGTTTCTTTTAGTTTCTCAACACAATGTTATTTGATTAGATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAACTCTGCTTAATGGAAAATGGGAACTTATATACACTACATCAAAGTCTATTTTACAGATTCAGGTGAAAACTATAACCATCATTCAAGTGTTTTACTGAATGTCATGAAAATTATGCTTCTAGGTCCTTTAATGGAACTGTATACATTGTTAAAATTCGTACCAAGCTGGGTAAAATGTTGAGTTTGTGAATGTCACCATTCAACTGTATATACACATTTTATGAGTTTGTGAGAATCTATACGATGCTTTGAAAGGAAATGGAAATCTGTACAGGAGACGGGGAAGGACATTCAATACATATATCTATAGAGTCTATCAAAATTATAACAACTTTGGCTGCTTTGTATGGATTGAAACATGTCTAGGTCACTAGAAAAATGCAATCATTCTCCCAGAAGTTGTACAAACAAAGGATGGGGAGACATTCCCACCAAAATTCCTCGAGACATTGCCACCAAAATTCC</genome_strand>
        <mrna_strand>CTTCAACGAAACTTCATCTCTCTTTCCCTTGTATCGTAAATCCTCATCCTCATTCCCATAATTATACCAACCTTTCTCCTCTCAATAAAAAATGGCAGACCAACGTTTCTTTCTTCCCTTCTTTCTTCAACAAGAAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCCATTGAACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAGGTTTTGCTTCACCTCATTGCAATTATCCAGTTTAGGTTTAGTTTTCTGACTGATTGTGTGTTTCTTTTAGTTTCTCAACACAATGTTATTTGATTAGATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAACTCTGCTTAATGGAAAATGGGAACTTATATACACTACATCAAAGTCTATTTTACAGATTCAGGTGAAAACTATAACCATCATTCAAGTGTTTTACTGAATGTCATGAAAATTATGCTTCTAGGTCCTTTAATGGAACTGTATACATTGTTAAAATTCGTACCAAGCTGGGTAAAATGTTGAGTTTGTGAATGTCACCATTCAACTGTATATACACATTTTATGAGTTTGTGAGAATCTATACGATGCTTTGAAAGGAAATGGAAATCTGTACAGGAGACGGGGAAGGACATTCAATACATATATCTATAGAGTCTGTCAAAATTATAACAACTTTGGCTGCTTTGTATGGATTGAAACATGTCTAGGTCACTAGAAAAATGCAATCATTCTCCCCAAAGTTGTACAAACCAAGGATGGGGAGACATTCCCACCAAAATTCCTCGAGACATTGCCACCAAAATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E408543" ref_strand="+" ref_description="SGN-E408543 [PPI-11-M10]">
      <seq>attcccatggccttatcctcactatcccttccactaactcatgttgcttcaaccaaactttatctctcttattccacttctttctctttcccttctacccaaaatactcatcctcataataatactaacatttctcatctcaataaaaaatggcagaccaatgtttcattcttccctgctttcttcaacaagaccaaagaccctacacccattaaacaagagcttcttcaagctattgcacctcttgatcgtggcgctgacgccactcctcaagaccagcagataattgatcagattgcttgcagacttgaagcttgcaatccaacaaaggagcccctcaactcaagtcttctcaatggaaaatgggaacttatatacactacatcaaagtcaattttacagattcagagacccaagattttgcgatctagattgaactaccaagcaataaatgtcgatacacttcgggctcagaatatggaaggagggcccttcttcaaccaggttactgcagatttgacccctctgaatgcacaaaaggtggcagtaaagtttgattatttcaaaattgctggactaatacctattaaagctcctggaagagctagaggtgagcttgaaattacttacttggatgaagaattgagggtatcaagagggtgatcttggcaacttgttcattttgaaaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="+" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="14568" stop="23478"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14926" g_stop="15152" g_length="227"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="294" r_length="217" r_score="0.890"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15153" i_stop="15249" i_length="97">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15250" g_stop="15363" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="295" r_stop="408" r_length="114" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15364" i_stop="20306" i_length="4943">
            <donor d_prob="0.949" d_score="0.98"/>
            <acceptor a_prob="0.665" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20307" g_stop="20402" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="409" r_stop="504" r_length="96" r_score="0.958"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20403" i_stop="21696" i_length="1294">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21697" g_stop="21771" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="505" r_stop="579" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21772" i_stop="22012" i_length="241">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22013" g_stop="22080" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="580" r_stop="647" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22081" i_stop="23136" i_length="1056">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="0.95"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23137" g_stop="23178" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="648" r_stop="690" r_length="43" r_score="0.952"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="+" ref_id="SGN-E408543" ref_strand="+">
        <total_alignment_score>0.938</total_alignment_score>
        <cumulative_length_of_scored_exons>622</cumulative_length_of_scored_exons>
        <coverage percentage="0.901" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E408543" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14926" e_stop="15152"/>
          <exon e_start="15250" e_stop="15363"/>
          <exon e_start="20307" e_stop="20402"/>
          <exon e_start="21697" e_stop="21771"/>
          <exon e_start="22013" e_stop="22080"/>
          <exon e_start="23137" e_stop="23178"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCTCTCTTTCCCTTGTATCGTAAATCCTCATCCTCATTCCCATAATTATACCAACCTTTCTCCTCTCAATAAAAAATGGCAGACCAACGTTTCTTTCTTCCCTTCTTTCTTCAACAAGAAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCCATTGAACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAGGTTTTGCTTCACCTCATTGCAATTATCCAGTTTAGGTTTAGTTTTCTGACTGATTGTGTGTTTCTTTTAGTTTCTCAACACAATGTTATTTGATTAGATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAACTCTGCTTAATGGAAAATGGGAACTTATATACACTACATCAAAGTCTATTTTACAGATTCAGGTGAAAACTATAACCATCATTCAAGTGTTTTACTGAATGTCATGAAAATTATGCTTCTAGGTCCTTTAATGGAACTGTATACATTGTTAAAATTCGTACCAAGCTGGGTAAAATGTTGAGTTTGTGAATGTCACCATTCAACTGTATATACACATTTTATGAGTTTGTGAGAATCTATACGATGCTTTGAAAGGAAATGGAAATCTGTACAGGAGACGGGGAAGGACATTCAATACATATATCTATAGAGTCTATCAAAATTATAACAACTTTGGCTGCTTTGTATGGATTGAAACATGTCTAGGTCACTAGAAAAATGCAATCATTCTCCCAGAAGTTGTACAAACAAAGGATGGGGAGACATTCCCACCAAAATTCCTCGAGACATTGCCACCAAAATTCCTCAATTTCTGGGAAATCACAGCAGTCTTAGATTTAATCTCTCTTCCCCATGAATATCACATGTTGAGTAGGCTTCCACAATTGGCATCTTTTACCAAGGTTTCTCCCAATGAAACCTGAAATGGTAATGTTGCAGATCTGGATATGAAAAGCTCTCAAGTTATAGCCTAAAGTTTGGTCGAATGCTTCAACAATTCCTTTCATCATAGCACAATCCGGAAGCTATACAAAAATGGTTCATTAGTAGATGGAAAATGTGCTTCACCTTCAAGGTGATACCGGTGAACCATAATCAATTCATTTTTGAGCTTCTATCGAGGAAGGAGGCGGTTATAGCTGGTCATTGGTTTTGGAACGGGAGACGGTTGACTCTTCAATGGTGGTCTTTGATCGCTGGATCAGAACTCGCACCCAAGAAAGAAGAACATCACATGATTAAAGCTTTTGGGATCCCAACACATCAGTATCATCAAAGGCGCGCTTAAGCCCTGAAGCGAGGCTCAAAACATGTTGAGCGCTTGACCTTGCTTTTTGTGCGCTTCAGTGTTGTCATCAAGGTTTTAAGGCAAACTTTTCCTTGATAATGAGCCTCTTATGAAGAAGTGACACTAAACGATTGATATTTCACTTAATCATAAAATAATTCTATTTCTTTGGTCATAAATGTGTCATTCATGATTATAATTATTTGTCTTGGACTAAACATATATAATTGTATCTTTTTCTCCCTTTGCGGCTTTTTTCATTAAAGCCCATGCTTTATTTGAGCTTTGCGCTTAAAGCATCACGGACCTTTGAGCTTTATGCGCTGTTCGCCTTTGATAACACCGCGAACACATGCATGGTCATTAAACAGGTTTAATAACATTTGGGAATTTAAGTGGGGCTTTATGGGAATTGATGAGGACACAAAGAATATGAACCAGTTAACTTGGGCCAGAATATACATAAAGAAAGCCTCCCATAGAGTGTTGCTGTCAAACATTAATTGACATTGATGAAGGAGGATGGAGATTTGAAATCTCAATCACATCGGATATCCATATAAAGATGAGGCCAATTGGAAGAGTGGAAAACATATCTGGAAATGAAACTGGCCCGATGTTTATATTAGGGTGAATAAGGAGATGTGTGATGGAGTCAATACTCGGGTTAGACCGGGTGAGAGGAGACTCTGAGTACTGCAGATGCATTAGGGATCAGGGATCAGGGATCAATTCTTAGCCCTTTTTTTTTTGCCTTGGTGATGGATGAGTTGACGCAATTCAGGAGGAGGTTCCATGGTGTATGTTATTTGCAGACGATATAGTACTGATTGATGAGATACGAGACTGAGTTAATGCTAGGTTGGATGTTTATAGACAAGTTATGGAGTCTAAAGGGTTCAGGTAGAGCAGGTGCAAAATGAAGTTTTTATAGTGCAAATTTAGTGTTGTTTGGATGTAGCAAATGTGGAAGTGACGCTTACAGCATAGACCAGTAAAAAGAGGGTTTTAAGTATCTTGGGTCCATAATCTAGGGTGGTGGGGACATTTAACGATGATGTCACACATTGCATTGGGGCAACATGGATGAAATGAAGGCTTGCCTTTGATGTTCTGTGCGACAAGAAGTACCACCTAAACTTAGAGATAAGTTCTACAGAGTGTGTAAGGGGTGAAGTGCTGACCAATCAAGAACTCATATATTTAGAAGATGCATGTTCCGGATATGAAAATTTTGAGATAAATGTGTGGACATACTAGGAGCGATAAGATTCGAAATGAGATTATCTAGGAGAGGGTGGGAGTGGCCACAAGACGAGGAAAGCTAGTCTGAGATAGTTTGGGCATGTAAAAAGGAGGTGTGCTGCCCTAGTAAGGAGGTGCAATCGGGTGTTGGTTGTACGAGGTATGCAGAGGGGTGAGGTGGACCCAAAAAGTACTGGGGAGAGGTGATCAGATAAGACATGATGGTACTTCATATTATCGTGGAAATGACTCTAGATAGGATGGAGTGGAGGTCACATATTGAGGTAGAAGGTTAGTAGCGGTTAAGTGTTGTCTTGCCTTGCGAAGATTTAGGCGTATTAGTGCATGTCGTATTACTAGTCAAACCTTTCTTGCCATATGTAGTTATTGTTTCTTGTAGACTTTACATAACTTTTTTTATTAACTGCTATGCTTTCTTCATTGTTTCTTCTTTCGTTACTAAGATTTGATGCACTTGAGTCGAGGGTCTTTTGGAAACAATCTCTACCTCCATGAGGAAGTGGTAAGGTCTGCGTATACTCTATCCTCTCTAGACCCCACTTAGTGGAGTTTCACTGGGCATGTTGTTGTTGCTATCCTAAAGTCTAATCAAATCCTTGTCTAAAATCACTATGTTAAGATATGTCATTAGGCCCATATGCCATATCTTAACATGGTATCAGAGCCAGAGATGATGGCCCCATTTAGAAGTGTTCATGCTCCAATTGAGGTCTGAGCGTGCAGGGGAGTGTTAAGACGTCTCACGTCGGTAGAGGGATGGGAATTTGGTCTCCTTATATGGACTTGGACAAACCTCCCCTCATGAGCTAGCTTTTGGGGTTGAGTTAGGTCCAGATGTCATATCTTAACAATCTCAAACTGAGTTTCCATATATCCAAAAATAGTAGTACGATGAAAGAATCCAGAAAATCTGACTTTTATACTCGGAGAATCTTCATCACGATCGCCACGTGCCCACACGACTGCCTACAGGTTGATCGGGACCCAACACGATCATTACCACGCCTTTGGGAAATCCAAAAAAGCCTAGACCTTGACCCCCTATTTACTCTACGCGATTGCGGCAGGGGAGCACACAATTGTGATGCACATCATTTTCCTTAACTTTGATCGTGATAACATTGCCTGTACCAGAAATCAGCATCAGCTGAAATGAAAAATTGTATACGAAACCCCTCAGATCTCAACCTAAACTGTACAAACAAGTCCCAAAATATTAAACCAAATAGGAAGTTCCAAAACATAAAATGGAACACACATGCTCCAAACTAAGGATTGGGTTATCACATAAAATACTTGTTTAAGGCCCATTCTTAATCACTTGCACTATTCTCATGTAATGAACTATCATCTTTATGAGGAGAACACAAGATCCTTCAGATCATTCTGAATTGGACCCTATTTGGTCTAAGTAGTCACCAGAGTCCAGATCAACTTGCCATTGTTACCAATTAATGGCATATGCAGTTTACAATAGAATATTATGGCTGTAGGATAATTATTCACCAATGAATGGTCAGTGTTTTGGAAAGCGAGAAGCGGAAAAAAGCGACGAGGGCTTGCTTCACAGAAGCGAGAAGCGTGAAGTGAAGCGCACACTTTTTTTAAAAAAAAGCTACATTTAGTATAAAAATAAAATAATAATAAATAACTAAATAGAGGTAATATAGTCTTAGATTGAAAGAAATTACATACGCAAAAATACTCATAAGTCATAACATATAAAGCAAAAAAATCAAAAACATAATTAAATCACAAAGATTGAAACTCCTATTCTTCAACAAGGCTGCTAGACTGATCACAAAATTAAAAAAAAAAAAAAGCAAAAGAAGTGAAAAAAAACCCAGAGGCAGCAGTCAGTAATTAGAAACAGAGCAGGCAACAGAGATGAAGAAAAGAAGAGAAGAAGAAGAAAAAACTAGAGAAGTCGAAACTCAGAGAGATAAAGAGATGAAGCACAGGCGAAGATTGTATATTTCAGGAGAAAAGAAACTCATAGAGATGAACTAATAAACATTAGCTAAAAAAGAGATGAACAAAAAGTTACCTGCAGTCTCGGTCGAGGTTGAAGAGAGAGGCAGCCTCAGTCGAGATCGTCAGGAGGGAAAGAAGTATTGTGAAAGAAGAGCCGCGAGGAGAGAAAGAAGGGAAAGAGTCGTGAGGAGAGAGAAGGTTATATTTCAGATTTTTTTAAAAAAAACTAATTTCTTTTTAAAAAAACTAATTGTCGCCTTTTATTTTATTTTATAAAAAGCGCGTTTTATTGCGCTTTTGCCTTTCTTCATCTGAAGCGAGAGCTTTTTTCAGATCGCCTCCCCTCAAGATAAAAAAGCGCACAAGGGTCGCCTCGCTTTGAAGCGCGCTTTAAGCGTGCTTTTTTGCGCTTTTCATAACACTGTAATGGTCATGCTATGTTCATTCTAAGTATGCCAGTTTATATTCATATCTATTGACAGAAACTTAATATTCTTTCTGTTAGCTGAATCAATTTTACTTGTATTGGAAACTCCAATTTTGTAATTGATGAACGGAATTAGTTGTCTCTTCTATTTTACTGTACAAGGCAGTATTTACTAAAGACAAGATTAGTATTGGTATGTGATTGCATGCTCTTTTGCATAGAAAGGTCAGGAAAAGGAAGAGGGTGAAATACCGAGTGCCTAGCACTTTCTAGTTCCCATATCTCGGCTACTGTATGATCAAGTAGCCAGTATTGTGTTGATGTTAATCTTCTTGTTATTTCGAAAAGTTATACAAATGAAGGTACTTATAGCTTAATATTTTGAACAGAGACCCAAGATTTTGCGATCTAGATTGAATTATCAAGCAATAAATGTAGATACACTTCGGGCTCAGAATATGGAAGGATGGCCCTTCTTCAACCAGGTACTTGATTTGGAATCAATTTTTTTTTTGACATGTCCAACAATGTTATATTGAAATTTATTGAGAAGTTAACTCCCTTATTTACTATTACTAGTAATCGTGGAAATACTCTCTATTTTAGTATCCTTCCCCTTTGTTGGATTTTTGTTTCTGCGAAATGTTCTATTAAGTGACCAAAGTCCAGGAACTTGCAGTTCCTTTTTTTTGTTCTTTTTTTTTTTTGTCTTTCAGACAAACGTGAAACTAGAATTCATGGTTGACTTATGGGGAAAAAAGGAGAATTTTTAGATTTCCTTGTAATTCAGACAGTGATACTTTAAATTTGATTTTCCCCTGAAATTTGGTGATAGAACAAACCACAAATGGAAGTAACTTTTGAGTTTGAGCTTCCATATCTGATATTTTCGGAATCCTAATAAAAATTATCCATAGATCTTTATGAACTAAAGGATGGAACTTCTCCAGGAAGAAGTCTCTAGAGAAAAAAAAGGGTTTAAGATTTAATATAAAATGAATGTAATTATGGTATTAGAAACATAGTGAAAAGCATAAAGAAGAAGAGGAGAGTAATATTCTAGAGATCCCATATACTGTTCCTTCAAACAACCTACACTTTTCTCATGTTTTAAGAGACTTGGAAAGCTTCAAACCACTAATTTTACCATAAAACCAAATTATACATCTAATTTATTGTAGATATGCACAGGATTTTTTTTTGATCAATAATGTGTAGTTCTGTTGAATATACTTTGCTAATTTGTTGTTTCCAGTTAGTTGCCTTTAATGCCATATTCCCACACACACTTCGGATTACATTTTCCTTCAGCTGTGTTACAGTAAATTTTGATTGTACTGTTCCAATCTGTTCGTGTATTATGTCTATTAGGATGAATCTGAAATTCAGTAGAAATTTAGCCTTCTATGGATAATCATCCTCAACTAACCTCCCCCCCCCCCCCCCCCAACCCCAAAACCCCCAACAAATCTCTTTCCTACATAAGGTTTAAGAGCACCCTTCATATCACAGTGACTTAACCTTTGTCCAATTGAAAACGATAACACGATGGATAGGTCACTGTAAGTTCTAACAAGTGGATAAAAATGGCATGTTTCCTTGCACATTTTCTCTATAGAAGAGACTAGAGAGAAAGCATATTAATTAACTAGAAAGCAAACCCAAAAGTTAAATCATTGTTGGCCTAGCAAAATAAGTTCATATATCTTCTCATCTATTTCTTTCTTTAGTAGCATATTTCCAAATTTTATGATTTACATCTTCAATCATCTCCTGAAGGTTACTGCAGATTTGACCCCGCTGAATGCACAAAAGGTGGCAGTAAAGTTTGATTATTTCAAAATTGCTGGACTAGTAAGTTCCACATTCTTTACTCATCACTTTACAACAAAGGGTTATTTCGCTTGTAATGCATTCTTACACTTAACTGTTCCAAATACAAAAATAAAAAATAAAAAAATAGAATGAGTTGGTAATGTAATTTCATGACAGTTTGTGCGGGTGTACATAACATGAGAGCACAAATATGGATCAGTATTTTTTAATCTTTTTTCTAACCTTTTCTTTTCTTCGTCTCTTCGTTGTTGGCTGGCAGATACCTATTAAAGCTCCTGGAAGAGCTAAAGGCGAGCTTGAAATTACTTACTTGGATGAAGAATTGAGGTGAGTTTATGTATTGTATTGTAATTCATGTATTCTTGAGTCTATAGAAGCCGACACTTAGTTCTGTTAACATGGTATGTCTACTTCATTCTAGTTTCTTGGTTGCATGTGTATGCTGTGTCATATAGTACACAGTTTTGTAAAATAAAATTAATATTATAAAACAAAATTCTGAATAAATATCTAAAGACATCAAACATTAGCAGTCATAGCTTACATTGCTCAAATTAATATTTAAATTAGGACCTCTTTGAAACAGCCTCTCTATCTCAAAGAGGTAGTGGTTAAAACTGCTTACACTCTACCCTCCCTAGACCACACTTTGGCACACTTTGTGGGATTTCATTGAGTATGTTATTTTTGTTGGCTTATAAAAGAAGTTATATTTCCTACTCGCAGCTACTTCCGGTTTACAGATTAGATCCATGGCTTCTTCCACCTTCTCTCTCCCTTTTTTCTTCATTCTTGTTCAATTTTTTTATTCTCTTTCCCATTTCTTTATTTAAAAAATCAAACTAGCAGAAACTTTCCTGAAGACTATGTTGTATGGAGCAATAATTTTTTCTGCAATAATTAGAAATAAAGAAACCAAGAGATTGAAATATCAATTCGTGGAGTTAAATGGCTTGTTATATGGAGAAATATTTGTATGTATTTTTAAGATTGTCCTTTTTTTGTTATGAAGTGGATTATAAACTCAAGAAGGGTAAAGAGAAGCTCTTTGTTGATCAGTAAAGAGAAATTTACTCTACAACAACAAACCTTAAAATATTAATACTATTTATCTTAAGGGTGTGAAAAATGGACGATTTGGACATTATTATAGGGTATTAATAAACATTATTAATCAAATACTTTCAATTAAGTTTTCATATATATGACATAAACTTATACAAACAAGTCCTTTGTGTCTAGATAGTTGGGTTTGCCCAAATTTAGTCTATCAATAATGTATCTTATGTTCAACTCATTAAATTCTGAACGGATTGTACGGGTCAAATGAGTTTTAGGCCGATTATGTCACCACATTCTAATTTGTTATCCAATTTTTGACAGGGTATCAAGA-GGTGATCTTGGCAACTTGTTCATTTTGAAAAT</genome_strand>
        <mrna_strand>TTC-TTTCTCTTTCCCTTCTACCCAAAATACTCAT-C-C--T--CATAATAATACTAACATTTCTCATCTCAATAAAAAATGGCAGACCAATGTTTCATTCTTCCCTGCTTTCTTCAAC---AAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCTATTGCACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAG.................................................................................................ATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAAGTCTTCTCAATGGAAAATGGGAACTTATATACACTACATCAAAGTCAATTTTACAGATTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCCAAGATTTTGCGATCTAGATTGAACTACCAAGCAATAAATGTCGATACACTTCGGGCTCAGAATATGGAAGGAGGGCCCTTCTTCAACCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTGCAGATTTGACCCCTCTGAATGCACAAAAGGTGGCAGTAAAGTTTGATTATTTCAAAATTGCTGGACTA.................................................................................................................................................................................................................................................ATACCTATTAAAGCTCCTGGAAGAGCTAGAGGTGAGCTTGAAATTACTTACTTGGATGAAGAATTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATCAAGAGGGTGATCTTGGCAACTTGTTCATTTTGAAAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E612558" ref_strand="+" ref_description="SGN-E612558 [62322]">
      <seq>ccttatcctcactatcccctccactaactcatgttgcttcaaccaaactttatctctcttattccacttttttctctttcccttctatccaaaatactcatcctcataataataatactaacatttctcctctcaataaaaaatggcagaccaatgtttcattcttccctgctttcttcaacaagaccaaagaccctacacccattaaacaagagcttcttcaagctattgcacctcttgatcgtggcgctgacgccactcctcaagaccagcagataattgatcagattgcttgcagacttgaagcttgcaatccaacaaaggagcccctcaactcaagtcttctcaatggaaaatgggaacttatatacactacatcaaagtcaattttacagattcagagacccaagattttgcgatctagattgaactaccaagcaataaatgtcgatacacttcgggctcagaatatggaaggaggtcccttcttcaaccaggttactgcagatttgacccctctgaatgcacaaaaggtggcagtaaagtttgattatttcaaaattgctggactaatacctattaaagctcctggaagagctagaggtgagcttgaaattacttacttggatgacgaattgagggtatcaagaggtgatcttggcaacttgttcattttgacaatgggttgaacccttcttacaaggtccctacttgagatggtactatctacttta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="+" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="14578" stop="23529"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14932" g_stop="15152" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="287" r_length="215" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15153" i_stop="15249" i_length="97">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15250" g_stop="15363" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="288" r_stop="401" r_length="114" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15364" i_stop="20306" i_length="4943">
            <donor d_prob="0.949" d_score="0.98"/>
            <acceptor a_prob="0.665" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20307" g_stop="20402" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="497" r_length="96" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20403" i_stop="21696" i_length="1294">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21697" g_stop="21771" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="572" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21772" i_stop="22012" i_length="241">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22013" g_stop="22080" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="573" r_stop="640" r_length="68" r_score="0.956"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22081" i_stop="23136" i_length="1056">
            <donor d_prob="0.998" d_score="0.94"/>
            <acceptor a_prob="0.987" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23137" g_stop="23229" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="641" r_stop="734" r_length="94" r_score="0.914"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="+" ref_id="SGN-E612558" ref_strand="+">
        <total_alignment_score>0.940</total_alignment_score>
        <cumulative_length_of_scored_exons>667</cumulative_length_of_scored_exons>
        <coverage percentage="0.909" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E612558" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14932" e_stop="15152"/>
          <exon e_start="15250" e_stop="15363"/>
          <exon e_start="20307" e_stop="20402"/>
          <exon e_start="21697" e_stop="21771"/>
          <exon e_start="22013" e_stop="22080"/>
          <exon e_start="23137" e_stop="23229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTTCCCTTGTATCGTAAATCCTCATCCTCATTCCCATAATTATACCAACCTTTCTCCTCTCAATAAAAAATGGCAGACCAACGTTTCTTTCTTCCCTTCTTTCTTCAACAAGAAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCCATTGAACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAGGTTTTGCTTCACCTCATTGCAATTATCCAGTTTAGGTTTAGTTTTCTGACTGATTGTGTGTTTCTTTTAGTTTCTCAACACAATGTTATTTGATTAGATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAACTCTGCTTAATGGAAAATGGGAACTTATATACACTACATCAAAGTCTATTTTACAGATTCAGGTGAAAACTATAACCATCATTCAAGTGTTTTACTGAATGTCATGAAAATTATGCTTCTAGGTCCTTTAATGGAACTGTATACATTGTTAAAATTCGTACCAAGCTGGGTAAAATGTTGAGTTTGTGAATGTCACCATTCAACTGTATATACACATTTTATGAGTTTGTGAGAATCTATACGATGCTTTGAAAGGAAATGGAAATCTGTACAGGAGACGGGGAAGGACATTCAATACATATATCTATAGAGTCTATCAAAATTATAACAACTTTGGCTGCTTTGTATGGATTGAAACATGTCTAGGTCACTAGAAAAATGCAATCATTCTCCCAGAAGTTGTACAAACAAAGGATGGGGAGACATTCCCACCAAAATTCCTCGAGACATTGCCACCAAAATTCCTCAATTTCTGGGAAATCACAGCAGTCTTAGATTTAATCTCTCTTCCCCATGAATATCACATGTTGAGTAGGCTTCCACAATTGGCATCTTTTACCAAGGTTTCTCCCAATGAAACCTGAAATGGTAATGTTGCAGATCTGGATATGAAAAGCTCTCAAGTTATAGCCTAAAGTTTGGTCGAATGCTTCAACAATTCCTTTCATCATAGCACAATCCGGAAGCTATACAAAAATGGTTCATTAGTAGATGGAAAATGTGCTTCACCTTCAAGGTGATACCGGTGAACCATAATCAATTCATTTTTGAGCTTCTATCGAGGAAGGAGGCGGTTATAGCTGGTCATTGGTTTTGGAACGGGAGACGGTTGACTCTTCAATGGTGGTCTTTGATCGCTGGATCAGAACTCGCACCCAAGAAAGAAGAACATCACATGATTAAAGCTTTTGGGATCCCAACACATCAGTATCATCAAAGGCGCGCTTAAGCCCTGAAGCGAGGCTCAAAACATGTTGAGCGCTTGACCTTGCTTTTTGTGCGCTTCAGTGTTGTCATCAAGGTTTTAAGGCAAACTTTTCCTTGATAATGAGCCTCTTATGAAGAAGTGACACTAAACGATTGATATTTCACTTAATCATAAAATAATTCTATTTCTTTGGTCATAAATGTGTCATTCATGATTATAATTATTTGTCTTGGACTAAACATATATAATTGTATCTTTTTCTCCCTTTGCGGCTTTTTTCATTAAAGCCCATGCTTTATTTGAGCTTTGCGCTTAAAGCATCACGGACCTTTGAGCTTTATGCGCTGTTCGCCTTTGATAACACCGCGAACACATGCATGGTCATTAAACAGGTTTAATAACATTTGGGAATTTAAGTGGGGCTTTATGGGAATTGATGAGGACACAAAGAATATGAACCAGTTAACTTGGGCCAGAATATACATAAAGAAAGCCTCCCATAGAGTGTTGCTGTCAAACATTAATTGACATTGATGAAGGAGGATGGAGATTTGAAATCTCAATCACATCGGATATCCATATAAAGATGAGGCCAATTGGAAGAGTGGAAAACATATCTGGAAATGAAACTGGCCCGATGTTTATATTAGGGTGAATAAGGAGATGTGTGATGGAGTCAATACTCGGGTTAGACCGGGTGAGAGGAGACTCTGAGTACTGCAGATGCATTAGGGATCAGGGATCAGGGATCAATTCTTAGCCCTTTTTTTTTTGCCTTGGTGATGGATGAGTTGACGCAATTCAGGAGGAGGTTCCATGGTGTATGTTATTTGCAGACGATATAGTACTGATTGATGAGATACGAGACTGAGTTAATGCTAGGTTGGATGTTTATAGACAAGTTATGGAGTCTAAAGGGTTCAGGTAGAGCAGGTGCAAAATGAAGTTTTTATAGTGCAAATTTAGTGTTGTTTGGATGTAGCAAATGTGGAAGTGACGCTTACAGCATAGACCAGTAAAAAGAGGGTTTTAAGTATCTTGGGTCCATAATCTAGGGTGGTGGGGACATTTAACGATGATGTCACACATTGCATTGGGGCAACATGGATGAAATGAAGGCTTGCCTTTGATGTTCTGTGCGACAAGAAGTACCACCTAAACTTAGAGATAAGTTCTACAGAGTGTGTAAGGGGTGAAGTGCTGACCAATCAAGAACTCATATATTTAGAAGATGCATGTTCCGGATATGAAAATTTTGAGATAAATGTGTGGACATACTAGGAGCGATAAGATTCGAAATGAGATTATCTAGGAGAGGGTGGGAGTGGCCACAAGACGAGGAAAGCTAGTCTGAGATAGTTTGGGCATGTAAAAAGGAGGTGTGCTGCCCTAGTAAGGAGGTGCAATCGGGTGTTGGTTGTACGAGGTATGCAGAGGGGTGAGGTGGACCCAAAAAGTACTGGGGAGAGGTGATCAGATAAGACATGATGGTACTTCATATTATCGTGGAAATGACTCTAGATAGGATGGAGTGGAGGTCACATATTGAGGTAGAAGGTTAGTAGCGGTTAAGTGTTGTCTTGCCTTGCGAAGATTTAGGCGTATTAGTGCATGTCGTATTACTAGTCAAACCTTTCTTGCCATATGTAGTTATTGTTTCTTGTAGACTTTACATAACTTTTTTTATTAACTGCTATGCTTTCTTCATTGTTTCTTCTTTCGTTACTAAGATTTGATGCACTTGAGTCGAGGGTCTTTTGGAAACAATCTCTACCTCCATGAGGAAGTGGTAAGGTCTGCGTATACTCTATCCTCTCTAGACCCCACTTAGTGGAGTTTCACTGGGCATGTTGTTGTTGCTATCCTAAAGTCTAATCAAATCCTTGTCTAAAATCACTATGTTAAGATATGTCATTAGGCCCATATGCCATATCTTAACATGGTATCAGAGCCAGAGATGATGGCCCCATTTAGAAGTGTTCATGCTCCAATTGAGGTCTGAGCGTGCAGGGGAGTGTTAAGACGTCTCACGTCGGTAGAGGGATGGGAATTTGGTCTCCTTATATGGACTTGGACAAACCTCCCCTCATGAGCTAGCTTTTGGGGTTGAGTTAGGTCCAGATGTCATATCTTAACAATCTCAAACTGAGTTTCCATATATCCAAAAATAGTAGTACGATGAAAGAATCCAGAAAATCTGACTTTTATACTCGGAGAATCTTCATCACGATCGCCACGTGCCCACACGACTGCCTACAGGTTGATCGGGACCCAACACGATCATTACCACGCCTTTGGGAAATCCAAAAAAGCCTAGACCTTGACCCCCTATTTACTCTACGCGATTGCGGCAGGGGAGCACACAATTGTGATGCACATCATTTTCCTTAACTTTGATCGTGATAACATTGCCTGTACCAGAAATCAGCATCAGCTGAAATGAAAAATTGTATACGAAACCCCTCAGATCTCAACCTAAACTGTACAAACAAGTCCCAAAATATTAAACCAAATAGGAAGTTCCAAAACATAAAATGGAACACACATGCTCCAAACTAAGGATTGGGTTATCACATAAAATACTTGTTTAAGGCCCATTCTTAATCACTTGCACTATTCTCATGTAATGAACTATCATCTTTATGAGGAGAACACAAGATCCTTCAGATCATTCTGAATTGGACCCTATTTGGTCTAAGTAGTCACCAGAGTCCAGATCAACTTGCCATTGTTACCAATTAATGGCATATGCAGTTTACAATAGAATATTATGGCTGTAGGATAATTATTCACCAATGAATGGTCAGTGTTTTGGAAAGCGAGAAGCGGAAAAAAGCGACGAGGGCTTGCTTCACAGAAGCGAGAAGCGTGAAGTGAAGCGCACACTTTTTTTAAAAAAAAGCTACATTTAGTATAAAAATAAAATAATAATAAATAACTAAATAGAGGTAATATAGTCTTAGATTGAAAGAAATTACATACGCAAAAATACTCATAAGTCATAACATATAAAGCAAAAAAATCAAAAACATAATTAAATCACAAAGATTGAAACTCCTATTCTTCAACAAGGCTGCTAGACTGATCACAAAATTAAAAAAAAAAAAAAGCAAAAGAAGTGAAAAAAAACCCAGAGGCAGCAGTCAGTAATTAGAAACAGAGCAGGCAACAGAGATGAAGAAAAGAAGAGAAGAAGAAGAAAAAACTAGAGAAGTCGAAACTCAGAGAGATAAAGAGATGAAGCACAGGCGAAGATTGTATATTTCAGGAGAAAAGAAACTCATAGAGATGAACTAATAAACATTAGCTAAAAAAGAGATGAACAAAAAGTTACCTGCAGTCTCGGTCGAGGTTGAAGAGAGAGGCAGCCTCAGTCGAGATCGTCAGGAGGGAAAGAAGTATTGTGAAAGAAGAGCCGCGAGGAGAGAAAGAAGGGAAAGAGTCGTGAGGAGAGAGAAGGTTATATTTCAGATTTTTTTAAAAAAAACTAATTTCTTTTTAAAAAAACTAATTGTCGCCTTTTATTTTATTTTATAAAAAGCGCGTTTTATTGCGCTTTTGCCTTTCTTCATCTGAAGCGAGAGCTTTTTTCAGATCGCCTCCCCTCAAGATAAAAAAGCGCACAAGGGTCGCCTCGCTTTGAAGCGCGCTTTAAGCGTGCTTTTTTGCGCTTTTCATAACACTGTAATGGTCATGCTATGTTCATTCTAAGTATGCCAGTTTATATTCATATCTATTGACAGAAACTTAATATTCTTTCTGTTAGCTGAATCAATTTTACTTGTATTGGAAACTCCAATTTTGTAATTGATGAACGGAATTAGTTGTCTCTTCTATTTTACTGTACAAGGCAGTATTTACTAAAGACAAGATTAGTATTGGTATGTGATTGCATGCTCTTTTGCATAGAAAGGTCAGGAAAAGGAAGAGGGTGAAATACCGAGTGCCTAGCACTTTCTAGTTCCCATATCTCGGCTACTGTATGATCAAGTAGCCAGTATTGTGTTGATGTTAATCTTCTTGTTATTTCGAAAAGTTATACAAATGAAGGTACTTATAGCTTAATATTTTGAACAGAGACCCAAGATTTTGCGATCTAGATTGAATTATCAAGCAATAAATGTAGATACACTTCGGGCTCAGAATATGGAAGGATGGCCCTTCTTCAACCAGGTACTTGATTTGGAATCAATTTTTTTTTTGACATGTCCAACAATGTTATATTGAAATTTATTGAGAAGTTAACTCCCTTATTTACTATTACTAGTAATCGTGGAAATACTCTCTATTTTAGTATCCTTCCCCTTTGTTGGATTTTTGTTTCTGCGAAATGTTCTATTAAGTGACCAAAGTCCAGGAACTTGCAGTTCCTTTTTTTTGTTCTTTTTTTTTTTTGTCTTTCAGACAAACGTGAAACTAGAATTCATGGTTGACTTATGGGGAAAAAAGGAGAATTTTTAGATTTCCTTGTAATTCAGACAGTGATACTTTAAATTTGATTTTCCCCTGAAATTTGGTGATAGAACAAACCACAAATGGAAGTAACTTTTGAGTTTGAGCTTCCATATCTGATATTTTCGGAATCCTAATAAAAATTATCCATAGATCTTTATGAACTAAAGGATGGAACTTCTCCAGGAAGAAGTCTCTAGAGAAAAAAAAGGGTTTAAGATTTAATATAAAATGAATGTAATTATGGTATTAGAAACATAGTGAAAAGCATAAAGAAGAAGAGGAGAGTAATATTCTAGAGATCCCATATACTGTTCCTTCAAACAACCTACACTTTTCTCATGTTTTAAGAGACTTGGAAAGCTTCAAACCACTAATTTTACCATAAAACCAAATTATACATCTAATTTATTGTAGATATGCACAGGATTTTTTTTTGATCAATAATGTGTAGTTCTGTTGAATATACTTTGCTAATTTGTTGTTTCCAGTTAGTTGCCTTTAATGCCATATTCCCACACACACTTCGGATTACATTTTCCTTCAGCTGTGTTACAGTAAATTTTGATTGTACTGTTCCAATCTGTTCGTGTATTATGTCTATTAGGATGAATCTGAAATTCAGTAGAAATTTAGCCTTCTATGGATAATCATCCTCAACTAACCTCCCCCCCCCCCCCCCCCAACCCCAAAACCCCCAACAAATCTCTTTCCTACATAAGGTTTAAGAGCACCCTTCATATCACAGTGACTTAACCTTTGTCCAATTGAAAACGATAACACGATGGATAGGTCACTGTAAGTTCTAACAAGTGGATAAAAATGGCATGTTTCCTTGCACATTTTCTCTATAGAAGAGACTAGAGAGAAAGCATATTAATTAACTAGAAAGCAAACCCAAAAGTTAAATCATTGTTGGCCTAGCAAAATAAGTTCATATATCTTCTCATCTATTTCTTTCTTTAGTAGCATATTTCCAAATTTTATGATTTACATCTTCAATCATCTCCTGAAGGTTACTGCAGATTTGACCCCGCTGAATGCACAAAAGGTGGCAGTAAAGTTTGATTATTTCAAAATTGCTGGACTAGTAAGTTCCACATTCTTTACTCATCACTTTACAACAAAGGGTTATTTCGCTTGTAATGCATTCTTACACTTAACTGTTCCAAATACAAAAATAAAAAATAAAAAAATAGAATGAGTTGGTAATGTAATTTCATGACAGTTTGTGCGGGTGTACATAACATGAGAGCACAAATATGGATCAGTATTTTTTAATCTTTTTTCTAACCTTTTCTTTTCTTCGTCTCTTCGTTGTTGGCTGGCAGATACCTATTAAAGCTCCTGGAAGAGCTAAAGGCGAGCTTGAAATTACTTACTTGGATGAAGAATTGAGGTGAGTTTATGTATTGTATTGTAATTCATGTATTCTTGAGTCTATAGAAGCCGACACTTAGTTCTGTTAACATGGTATGTCTACTTCATTCTAGTTTCTTGGTTGCATGTGTATGCTGTGTCATATAGTACACAGTTTTGTAAAATAAAATTAATATTATAAAACAAAATTCTGAATAAATATCTAAAGACATCAAACATTAGCAGTCATAGCTTACATTGCTCAAATTAATATTTAAATTAGGACCTCTTTGAAACAGCCTCTCTATCTCAAAGAGGTAGTGGTTAAAACTGCTTACACTCTACCCTCCCTAGACCACACTTTGGCACACTTTGTGGGATTTCATTGAGTATGTTATTTTTGTTGGCTTATAAAAGAAGTTATATTTCCTACTCGCAGCTACTTCCGGTTTACAGATTAGATCCATGGCTTCTTCCACCTTCTCTCTCCCTTTTTTCTTCATTCTTGTTCAATTTTTTTATTCTCTTTCCCATTTCTTTATTTAAAAAATCAAACTAGCAGAAACTTTCCTGAAGACTATGTTGTATGGAGCAATAATTTTTTCTGCAATAATTAGAAATAAAGAAACCAAGAGATTGAAATATCAATTCGTGGAGTTAAATGGCTTGTTATATGGAGAAATATTTGTATGTATTTTTAAGATTGTCCTTTTTTTGTTATGAAGTGGATTATAAACTCAAGAAGGGTAAAGAGAAGCTCTTTGTTGATCAGTAAAGAGAAATTTACTCTACAACAACAAACCTTAAAATATTAATACTATTTATCTTAAGGGTGTGAAAAATGGACGATTTGGACATTATTATAGGGTATTAATAAACATTATTAATCAAATACTTTCAATTAAGTTTTCATATATATGACATAAACTTATACAAACAAGTCCTTTGTGTCTAGATAGTTGGGTTTGCCCAAATTTAGTCTATCAATAATGTATCTTATGTTCAACTCATTAAATTCTGAACGGATTGTACGGGTCAAATGAGTTTTAGGCCGATTATGTCACCACATTCTAATTTGTTATCCAATTTTTGACAGGGTATCAAGAGGTGATCTTGGCAACTTGTTCATTTTGAAAAT-GGTTG-ACCCTTCTTACAAGGTCCCTACTTGAGATTGCTACTATCAACTTTA</genome_strand>
        <mrna_strand>TCTCTTTCCCTTCTATCCAAAATACTCATCCTCA-T--AATAATAATACTAACATTTCTCCTCTCAATAAAAAATGGCAGACCAATGTTTCATTCTTCCCTGCTTTCTTCAAC---AAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCTATTGCACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAG.................................................................................................ATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAAGTCTTCTCAATGGAAAATGGGAACTTATATACACTACATCAAAGTCAATTTTACAGATTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCCAAGATTTTGCGATCTAGATTGAACTACCAAGCAATAAATGTCGATACACTTCGGGCTCAGAATATGGAAGGAGGTCCCTTCTTCAACCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTGCAGATTTGACCCCTCTGAATGCACAAAAGGTGGCAGTAAAGTTTGATTATTTCAAAATTGCTGGACTA.................................................................................................................................................................................................................................................ATACCTATTAAAGCTCCTGGAAGAGCTAGAGGTGAGCTTGAAATTACTTACTTGGATGACGAATTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATCAAGAGGTGATCTTGGCAACTTGTTCATTTTGACAATGGGTTGAACCCTTCTTACAAGGTCCCTACTTGAGA-TGGTACTATCTACTTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E560938" ref_strand="+" ref_description="SGN-E560938 [20671]">
      <seq>aattatctctcttattcagttttttctctttcccttctatccaaaatactcatcctcataataataatactaacatttctcctctcaataaaaaatggcagaccaatgtttcattcttccctgctttcttcaacaagaccaaagaccctacacccattaaacaagagcttcttcaagctattgcacctcttgatcgtggcgctgacgccactcctcaagaccagcagataattgatcagattgcttgcagacttgaagcttgcaatccaacaaaggagcccctcaactcaagtcttctcaatggaaaatgggaacttatatacactacatcaaagtcaattttacagattcagagacccaagattttgcgatctagattgaactaccaagcaataaatgtcgatacacttcgggctcagaatatggaaggaggtcccttcttcaaccaggttactgcagatttgacccctctgaatgcacaaaaggtggcagtaaagtttgattatttcaaaattgctggactaatacctattaaagctcctggaagagctagcaggtgagctttgaaattacttacttggatgaagaattgacgggtatcaagaggtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="+" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="14671" stop="23451"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14932" g_stop="15152" g_length="221"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="239" r_length="215" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15153" i_stop="15249" i_length="97">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15250" g_stop="15363" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="240" r_stop="353" r_length="114" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15364" i_stop="20306" i_length="4943">
            <donor d_prob="0.949" d_score="0.98"/>
            <acceptor a_prob="0.665" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20307" g_stop="20402" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="354" r_stop="449" r_length="96" r_score="0.948"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20403" i_stop="21696" i_length="1294">
            <donor d_prob="0.999" d_score="0.94"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21697" g_stop="21771" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="524" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21772" i_stop="22012" i_length="241">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.88"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22013" g_stop="22080" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="525" r_stop="595" r_length="71" r_score="0.882"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22081" i_stop="23136" i_length="1056">
            <donor d_prob="0.998" d_score="0.83"/>
            <acceptor a_prob="0.987" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23137" g_stop="23151" g_length="15"/>
          <reference_exon_boundary r_type="cDNA" r_start="596" r_stop="610" r_length="15" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="+" ref_id="SGN-E560938" ref_strand="+">
        <total_alignment_score>0.936</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="0.966" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E560938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14932" e_stop="15152"/>
          <exon e_start="15250" e_stop="15363"/>
          <exon e_start="20307" e_stop="20402"/>
          <exon e_start="21697" e_stop="21771"/>
          <exon e_start="22013" e_stop="22080"/>
          <exon e_start="23137" e_stop="23151"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTCTTTCCCTTGTATCGTAAATCCTCATCCTCATTCCCATAATTATACCAACCTTTCTCCTCTCAATAAAAAATGGCAGACCAACGTTTCTTTCTTCCCTTCTTTCTTCAACAAGAAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCCATTGAACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAGGTTTTGCTTCACCTCATTGCAATTATCCAGTTTAGGTTTAGTTTTCTGACTGATTGTGTGTTTCTTTTAGTTTCTCAACACAATGTTATTTGATTAGATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAACTCTGCTTAATGGAAAATGGGAACTTATATACACTACATCAAAGTCTATTTTACAGATTCAGGTGAAAACTATAACCATCATTCAAGTGTTTTACTGAATGTCATGAAAATTATGCTTCTAGGTCCTTTAATGGAACTGTATACATTGTTAAAATTCGTACCAAGCTGGGTAAAATGTTGAGTTTGTGAATGTCACCATTCAACTGTATATACACATTTTATGAGTTTGTGAGAATCTATACGATGCTTTGAAAGGAAATGGAAATCTGTACAGGAGACGGGGAAGGACATTCAATACATATATCTATAGAGTCTATCAAAATTATAACAACTTTGGCTGCTTTGTATGGATTGAAACATGTCTAGGTCACTAGAAAAATGCAATCATTCTCCCAGAAGTTGTACAAACAAAGGATGGGGAGACATTCCCACCAAAATTCCTCGAGACATTGCCACCAAAATTCCTCAATTTCTGGGAAATCACAGCAGTCTTAGATTTAATCTCTCTTCCCCATGAATATCACATGTTGAGTAGGCTTCCACAATTGGCATCTTTTACCAAGGTTTCTCCCAATGAAACCTGAAATGGTAATGTTGCAGATCTGGATATGAAAAGCTCTCAAGTTATAGCCTAAAGTTTGGTCGAATGCTTCAACAATTCCTTTCATCATAGCACAATCCGGAAGCTATACAAAAATGGTTCATTAGTAGATGGAAAATGTGCTTCACCTTCAAGGTGATACCGGTGAACCATAATCAATTCATTTTTGAGCTTCTATCGAGGAAGGAGGCGGTTATAGCTGGTCATTGGTTTTGGAACGGGAGACGGTTGACTCTTCAATGGTGGTCTTTGATCGCTGGATCAGAACTCGCACCCAAGAAAGAAGAACATCACATGATTAAAGCTTTTGGGATCCCAACACATCAGTATCATCAAAGGCGCGCTTAAGCCCTGAAGCGAGGCTCAAAACATGTTGAGCGCTTGACCTTGCTTTTTGTGCGCTTCAGTGTTGTCATCAAGGTTTTAAGGCAAACTTTTCCTTGATAATGAGCCTCTTATGAAGAAGTGACACTAAACGATTGATATTTCACTTAATCATAAAATAATTCTATTTCTTTGGTCATAAATGTGTCATTCATGATTATAATTATTTGTCTTGGACTAAACATATATAATTGTATCTTTTTCTCCCTTTGCGGCTTTTTTCATTAAAGCCCATGCTTTATTTGAGCTTTGCGCTTAAAGCATCACGGACCTTTGAGCTTTATGCGCTGTTCGCCTTTGATAACACCGCGAACACATGCATGGTCATTAAACAGGTTTAATAACATTTGGGAATTTAAGTGGGGCTTTATGGGAATTGATGAGGACACAAAGAATATGAACCAGTTAACTTGGGCCAGAATATACATAAAGAAAGCCTCCCATAGAGTGTTGCTGTCAAACATTAATTGACATTGATGAAGGAGGATGGAGATTTGAAATCTCAATCACATCGGATATCCATATAAAGATGAGGCCAATTGGAAGAGTGGAAAACATATCTGGAAATGAAACTGGCCCGATGTTTATATTAGGGTGAATAAGGAGATGTGTGATGGAGTCAATACTCGGGTTAGACCGGGTGAGAGGAGACTCTGAGTACTGCAGATGCATTAGGGATCAGGGATCAGGGATCAATTCTTAGCCCTTTTTTTTTTGCCTTGGTGATGGATGAGTTGACGCAATTCAGGAGGAGGTTCCATGGTGTATGTTATTTGCAGACGATATAGTACTGATTGATGAGATACGAGACTGAGTTAATGCTAGGTTGGATGTTTATAGACAAGTTATGGAGTCTAAAGGGTTCAGGTAGAGCAGGTGCAAAATGAAGTTTTTATAGTGCAAATTTAGTGTTGTTTGGATGTAGCAAATGTGGAAGTGACGCTTACAGCATAGACCAGTAAAAAGAGGGTTTTAAGTATCTTGGGTCCATAATCTAGGGTGGTGGGGACATTTAACGATGATGTCACACATTGCATTGGGGCAACATGGATGAAATGAAGGCTTGCCTTTGATGTTCTGTGCGACAAGAAGTACCACCTAAACTTAGAGATAAGTTCTACAGAGTGTGTAAGGGGTGAAGTGCTGACCAATCAAGAACTCATATATTTAGAAGATGCATGTTCCGGATATGAAAATTTTGAGATAAATGTGTGGACATACTAGGAGCGATAAGATTCGAAATGAGATTATCTAGGAGAGGGTGGGAGTGGCCACAAGACGAGGAAAGCTAGTCTGAGATAGTTTGGGCATGTAAAAAGGAGGTGTGCTGCCCTAGTAAGGAGGTGCAATCGGGTGTTGGTTGTACGAGGTATGCAGAGGGGTGAGGTGGACCCAAAAAGTACTGGGGAGAGGTGATCAGATAAGACATGATGGTACTTCATATTATCGTGGAAATGACTCTAGATAGGATGGAGTGGAGGTCACATATTGAGGTAGAAGGTTAGTAGCGGTTAAGTGTTGTCTTGCCTTGCGAAGATTTAGGCGTATTAGTGCATGTCGTATTACTAGTCAAACCTTTCTTGCCATATGTAGTTATTGTTTCTTGTAGACTTTACATAACTTTTTTTATTAACTGCTATGCTTTCTTCATTGTTTCTTCTTTCGTTACTAAGATTTGATGCACTTGAGTCGAGGGTCTTTTGGAAACAATCTCTACCTCCATGAGGAAGTGGTAAGGTCTGCGTATACTCTATCCTCTCTAGACCCCACTTAGTGGAGTTTCACTGGGCATGTTGTTGTTGCTATCCTAAAGTCTAATCAAATCCTTGTCTAAAATCACTATGTTAAGATATGTCATTAGGCCCATATGCCATATCTTAACATGGTATCAGAGCCAGAGATGATGGCCCCATTTAGAAGTGTTCATGCTCCAATTGAGGTCTGAGCGTGCAGGGGAGTGTTAAGACGTCTCACGTCGGTAGAGGGATGGGAATTTGGTCTCCTTATATGGACTTGGACAAACCTCCCCTCATGAGCTAGCTTTTGGGGTTGAGTTAGGTCCAGATGTCATATCTTAACAATCTCAAACTGAGTTTCCATATATCCAAAAATAGTAGTACGATGAAAGAATCCAGAAAATCTGACTTTTATACTCGGAGAATCTTCATCACGATCGCCACGTGCCCACACGACTGCCTACAGGTTGATCGGGACCCAACACGATCATTACCACGCCTTTGGGAAATCCAAAAAAGCCTAGACCTTGACCCCCTATTTACTCTACGCGATTGCGGCAGGGGAGCACACAATTGTGATGCACATCATTTTCCTTAACTTTGATCGTGATAACATTGCCTGTACCAGAAATCAGCATCAGCTGAAATGAAAAATTGTATACGAAACCCCTCAGATCTCAACCTAAACTGTACAAACAAGTCCCAAAATATTAAACCAAATAGGAAGTTCCAAAACATAAAATGGAACACACATGCTCCAAACTAAGGATTGGGTTATCACATAAAATACTTGTTTAAGGCCCATTCTTAATCACTTGCACTATTCTCATGTAATGAACTATCATCTTTATGAGGAGAACACAAGATCCTTCAGATCATTCTGAATTGGACCCTATTTGGTCTAAGTAGTCACCAGAGTCCAGATCAACTTGCCATTGTTACCAATTAATGGCATATGCAGTTTACAATAGAATATTATGGCTGTAGGATAATTATTCACCAATGAATGGTCAGTGTTTTGGAAAGCGAGAAGCGGAAAAAAGCGACGAGGGCTTGCTTCACAGAAGCGAGAAGCGTGAAGTGAAGCGCACACTTTTTTTAAAAAAAAGCTACATTTAGTATAAAAATAAAATAATAATAAATAACTAAATAGAGGTAATATAGTCTTAGATTGAAAGAAATTACATACGCAAAAATACTCATAAGTCATAACATATAAAGCAAAAAAATCAAAAACATAATTAAATCACAAAGATTGAAACTCCTATTCTTCAACAAGGCTGCTAGACTGATCACAAAATTAAAAAAAAAAAAAAGCAAAAGAAGTGAAAAAAAACCCAGAGGCAGCAGTCAGTAATTAGAAACAGAGCAGGCAACAGAGATGAAGAAAAGAAGAGAAGAAGAAGAAAAAACTAGAGAAGTCGAAACTCAGAGAGATAAAGAGATGAAGCACAGGCGAAGATTGTATATTTCAGGAGAAAAGAAACTCATAGAGATGAACTAATAAACATTAGCTAAAAAAGAGATGAACAAAAAGTTACCTGCAGTCTCGGTCGAGGTTGAAGAGAGAGGCAGCCTCAGTCGAGATCGTCAGGAGGGAAAGAAGTATTGTGAAAGAAGAGCCGCGAGGAGAGAAAGAAGGGAAAGAGTCGTGAGGAGAGAGAAGGTTATATTTCAGATTTTTTTAAAAAAAACTAATTTCTTTTTAAAAAAACTAATTGTCGCCTTTTATTTTATTTTATAAAAAGCGCGTTTTATTGCGCTTTTGCCTTTCTTCATCTGAAGCGAGAGCTTTTTTCAGATCGCCTCCCCTCAAGATAAAAAAGCGCACAAGGGTCGCCTCGCTTTGAAGCGCGCTTTAAGCGTGCTTTTTTGCGCTTTTCATAACACTGTAATGGTCATGCTATGTTCATTCTAAGTATGCCAGTTTATATTCATATCTATTGACAGAAACTTAATATTCTTTCTGTTAGCTGAATCAATTTTACTTGTATTGGAAACTCCAATTTTGTAATTGATGAACGGAATTAGTTGTCTCTTCTATTTTACTGTACAAGGCAGTATTTACTAAAGACAAGATTAGTATTGGTATGTGATTGCATGCTCTTTTGCATAGAAAGGTCAGGAAAAGGAAGAGGGTGAAATACCGAGTGCCTAGCACTTTCTAGTTCCCATATCTCGGCTACTGTATGATCAAGTAGCCAGTATTGTGTTGATGTTAATCTTCTTGTTATTTCGAAAAGTTATACAAATGAAGGTACTTATAGCTTAATATTTTGAACAGAGACCCAAGATTTTGCGATCTAGATTGAATTATCAAGCAATAAATGTAGATACACTTCGGGCTCAGAATATGGAAGGATGGCCCTTCTTCAACCAGGTACTTGATTTGGAATCAATTTTTTTTTTGACATGTCCAACAATGTTATATTGAAATTTATTGAGAAGTTAACTCCCTTATTTACTATTACTAGTAATCGTGGAAATACTCTCTATTTTAGTATCCTTCCCCTTTGTTGGATTTTTGTTTCTGCGAAATGTTCTATTAAGTGACCAAAGTCCAGGAACTTGCAGTTCCTTTTTTTTGTTCTTTTTTTTTTTTGTCTTTCAGACAAACGTGAAACTAGAATTCATGGTTGACTTATGGGGAAAAAAGGAGAATTTTTAGATTTCCTTGTAATTCAGACAGTGATACTTTAAATTTGATTTTCCCCTGAAATTTGGTGATAGAACAAACCACAAATGGAAGTAACTTTTGAGTTTGAGCTTCCATATCTGATATTTTCGGAATCCTAATAAAAATTATCCATAGATCTTTATGAACTAAAGGATGGAACTTCTCCAGGAAGAAGTCTCTAGAGAAAAAAAAGGGTTTAAGATTTAATATAAAATGAATGTAATTATGGTATTAGAAACATAGTGAAAAGCATAAAGAAGAAGAGGAGAGTAATATTCTAGAGATCCCATATACTGTTCCTTCAAACAACCTACACTTTTCTCATGTTTTAAGAGACTTGGAAAGCTTCAAACCACTAATTTTACCATAAAACCAAATTATACATCTAATTTATTGTAGATATGCACAGGATTTTTTTTTGATCAATAATGTGTAGTTCTGTTGAATATACTTTGCTAATTTGTTGTTTCCAGTTAGTTGCCTTTAATGCCATATTCCCACACACACTTCGGATTACATTTTCCTTCAGCTGTGTTACAGTAAATTTTGATTGTACTGTTCCAATCTGTTCGTGTATTATGTCTATTAGGATGAATCTGAAATTCAGTAGAAATTTAGCCTTCTATGGATAATCATCCTCAACTAACCTCCCCCCCCCCCCCCCCCAACCCCAAAACCCCCAACAAATCTCTTTCCTACATAAGGTTTAAGAGCACCCTTCATATCACAGTGACTTAACCTTTGTCCAATTGAAAACGATAACACGATGGATAGGTCACTGTAAGTTCTAACAAGTGGATAAAAATGGCATGTTTCCTTGCACATTTTCTCTATAGAAGAGACTAGAGAGAAAGCATATTAATTAACTAGAAAGCAAACCCAAAAGTTAAATCATTGTTGGCCTAGCAAAATAAGTTCATATATCTTCTCATCTATTTCTTTCTTTAGTAGCATATTTCCAAATTTTATGATTTACATCTTCAATCATCTCCTGAAGGTTACTGCAGATTTGACCCCGCTGAATGCACAAAAGGTGGCAGTAAAGTTTGATTATTTCAAAATTGCTGGACTAGTAAGTTCCACATTCTTTACTCATCACTTTACAACAAAGGGTTATTTCGCTTGTAATGCATTCTTACACTTAACTGTTCCAAATACAAAAATAAAAAATAAAAAAATAGAATGAGTTGGTAATGTAATTTCATGACAGTTTGTGCGGGTGTACATAACATGAGAGCACAAATATGGATCAGTATTTTTTAATCTTTTTTCTAACCTTTTCTTTTCTTCGTCTCTTCGTTGTTGGCTGGCAGATACCTATTAAAGCTCCTGGAAGAGCTA-AAGGCGAGC-TTGAAATTACTTACTTGGATGAAGAATTGA-GGTGAGTTTATGTATTGTATTGTAATTCATGTATTCTTGAGTCTATAGAAGCCGACACTTAGTTCTGTTAACATGGTATGTCTACTTCATTCTAGTTTCTTGGTTGCATGTGTATGCTGTGTCATATAGTACACAGTTTTGTAAAATAAAATTAATATTATAAAACAAAATTCTGAATAAATATCTAAAGACATCAAACATTAGCAGTCATAGCTTACATTGCTCAAATTAATATTTAAATTAGGACCTCTTTGAAACAGCCTCTCTATCTCAAAGAGGTAGTGGTTAAAACTGCTTACACTCTACCCTCCCTAGACCACACTTTGGCACACTTTGTGGGATTTCATTGAGTATGTTATTTTTGTTGGCTTATAAAAGAAGTTATATTTCCTACTCGCAGCTACTTCCGGTTTACAGATTAGATCCATGGCTTCTTCCACCTTCTCTCTCCCTTTTTTCTTCATTCTTGTTCAATTTTTTTATTCTCTTTCCCATTTCTTTATTTAAAAAATCAAACTAGCAGAAACTTTCCTGAAGACTATGTTGTATGGAGCAATAATTTTTTCTGCAATAATTAGAAATAAAGAAACCAAGAGATTGAAATATCAATTCGTGGAGTTAAATGGCTTGTTATATGGAGAAATATTTGTATGTATTTTTAAGATTGTCCTTTTTTTGTTATGAAGTGGATTATAAACTCAAGAAGGGTAAAGAGAAGCTCTTTGTTGATCAGTAAAGAGAAATTTACTCTACAACAACAAACCTTAAAATATTAATACTATTTATCTTAAGGGTGTGAAAAATGGACGATTTGGACATTATTATAGGGTATTAATAAACATTATTAATCAAATACTTTCAATTAAGTTTTCATATATATGACATAAACTTATACAAACAAGTCCTTTGTGTCTAGATAGTTGGGTTTGCCCAAATTTAGTCTATCAATAATGTATCTTATGTTCAACTCATTAAATTCTGAACGGATTGTACGGGTCAAATGAGTTTTAGGCCGATTATGTCACCACATTCTAATTTGTTATCCAATTTTTGACAGGGTATCAAGAGGTGA</genome_strand>
        <mrna_strand>TCTCTTTCCCTTCTATCCAAAATACTCATCCTCA-T--AATAATAATACTAACATTTCTCCTCTCAATAAAAAATGGCAGACCAATGTTTCATTCTTCCCTGCTTTCTTCAAC---AAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCTATTGCACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAG.................................................................................................ATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAAGTCTTCTCAATGGAAAATGGGAACTTATATACACTACATCAAAGTCAATTTTACAGATTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCCAAGATTTTGCGATCTAGATTGAACTACCAAGCAATAAATGTCGATACACTTCGGGCTCAGAATATGGAAGGAGGTCCCTTCTTCAACCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTGCAGATTTGACCCCTCTGAATGCACAAAAGGTGGCAGTAAAGTTTGATTATTTCAAAATTGCTGGACTA.................................................................................................................................................................................................................................................ATACCTATTAAAGCTCCTGGAAGAGCTAGCAGGTGAGCTTTGAAATTACTTACTTGGATGAAGAATTGACG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATCAAGAGGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E347037" ref_strand="+" ref_description="SGN-E347037 [cTOF-25-B19]">
      <seq>aagaccaaagaccctacacccattaaacaagagcttcttcaagccattgaacctcttgatcgtggcgctgacgccactcctcaagaccagcagataattgatcagattgcttgcagacttgaagcttgcaatccaacaaaggagcccctcaactcaactctgcttaatggaaaatgggaacttatatacactacatcaaagtctattttacagattcagagacccaagattttgcgatctagattgaattatcaagcaataaatgtagatacacttcgggctcagaatatggaaggatggcccttcttcaaccaggttactgcagatttgaccccgctgaatgcacaaaaggtggcagtaaagtttgattatttcaaaattgctggactaatacctattaaagctcctggaagagctaaaggcgagcttgaaattacttacttggatgaagaattgagggtatcaagaggtgatcttggcaacttgttcattttgaaaatggttgacccttcttacaaggtccctacttgagattgctactatcaactttatagagttactaattagtgtcacatcttatattataatattatatgccaagtctgtgcaaaggattcacaagcattttctctcttcatttaactactgtacaaaatttcttgtcataatcacatgacct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="+" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="14748" stop="23714"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15048" g_stop="15152" g_length="105"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="105" r_length="105" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15153" i_stop="15249" i_length="97">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15250" g_stop="15363" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="106" r_stop="219" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15364" i_stop="20306" i_length="4943">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.665" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20307" g_stop="20402" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="220" r_stop="315" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20403" i_stop="21696" i_length="1294">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21697" g_stop="21771" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="316" r_stop="390" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21772" i_stop="22012" i_length="241">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22013" g_stop="22080" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="391" r_stop="458" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22081" i_stop="23136" i_length="1056">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23137" g_stop="23326" g_length="190"/>
          <reference_exon_boundary r_type="cDNA" r_start="459" r_stop="645" r_length="187" r_score="0.984"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="23327" i_stop="23378" i_length="52">
            <donor d_prob="0.521" d_score="0.94"/>
            <acceptor a_prob="0.349" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="23379" g_stop="23414" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="679" r_length="34" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="+" ref_id="SGN-E347037" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>684</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E347037" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15048" e_stop="15152"/>
          <exon e_start="15250" e_stop="15363"/>
          <exon e_start="20307" e_stop="20402"/>
          <exon e_start="21697" e_stop="21771"/>
          <exon e_start="22013" e_stop="22080"/>
          <exon e_start="23137" e_stop="23326"/>
          <exon e_start="23379" e_stop="23414"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCCATTGAACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAGGTTTTGCTTCACCTCATTGCAATTATCCAGTTTAGGTTTAGTTTTCTGACTGATTGTGTGTTTCTTTTAGTTTCTCAACACAATGTTATTTGATTAGATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAACTCTGCTTAATGGAAAATGGGAACTTATATACACTACATCAAAGTCTATTTTACAGATTCAGGTGAAAACTATAACCATCATTCAAGTGTTTTACTGAATGTCATGAAAATTATGCTTCTAGGTCCTTTAATGGAACTGTATACATTGTTAAAATTCGTACCAAGCTGGGTAAAATGTTGAGTTTGTGAATGTCACCATTCAACTGTATATACACATTTTATGAGTTTGTGAGAATCTATACGATGCTTTGAAAGGAAATGGAAATCTGTACAGGAGACGGGGAAGGACATTCAATACATATATCTATAGAGTCTATCAAAATTATAACAACTTTGGCTGCTTTGTATGGATTGAAACATGTCTAGGTCACTAGAAAAATGCAATCATTCTCCCAGAAGTTGTACAAACAAAGGATGGGGAGACATTCCCACCAAAATTCCTCGAGACATTGCCACCAAAATTCCTCAATTTCTGGGAAATCACAGCAGTCTTAGATTTAATCTCTCTTCCCCATGAATATCACATGTTGAGTAGGCTTCCACAATTGGCATCTTTTACCAAGGTTTCTCCCAATGAAACCTGAAATGGTAATGTTGCAGATCTGGATATGAAAAGCTCTCAAGTTATAGCCTAAAGTTTGGTCGAATGCTTCAACAATTCCTTTCATCATAGCACAATCCGGAAGCTATACAAAAATGGTTCATTAGTAGATGGAAAATGTGCTTCACCTTCAAGGTGATACCGGTGAACCATAATCAATTCATTTTTGAGCTTCTATCGAGGAAGGAGGCGGTTATAGCTGGTCATTGGTTTTGGAACGGGAGACGGTTGACTCTTCAATGGTGGTCTTTGATCGCTGGATCAGAACTCGCACCCAAGAAAGAAGAACATCACATGATTAAAGCTTTTGGGATCCCAACACATCAGTATCATCAAAGGCGCGCTTAAGCCCTGAAGCGAGGCTCAAAACATGTTGAGCGCTTGACCTTGCTTTTTGTGCGCTTCAGTGTTGTCATCAAGGTTTTAAGGCAAACTTTTCCTTGATAATGAGCCTCTTATGAAGAAGTGACACTAAACGATTGATATTTCACTTAATCATAAAATAATTCTATTTCTTTGGTCATAAATGTGTCATTCATGATTATAATTATTTGTCTTGGACTAAACATATATAATTGTATCTTTTTCTCCCTTTGCGGCTTTTTTCATTAAAGCCCATGCTTTATTTGAGCTTTGCGCTTAAAGCATCACGGACCTTTGAGCTTTATGCGCTGTTCGCCTTTGATAACACCGCGAACACATGCATGGTCATTAAACAGGTTTAATAACATTTGGGAATTTAAGTGGGGCTTTATGGGAATTGATGAGGACACAAAGAATATGAACCAGTTAACTTGGGCCAGAATATACATAAAGAAAGCCTCCCATAGAGTGTTGCTGTCAAACATTAATTGACATTGATGAAGGAGGATGGAGATTTGAAATCTCAATCACATCGGATATCCATATAAAGATGAGGCCAATTGGAAGAGTGGAAAACATATCTGGAAATGAAACTGGCCCGATGTTTATATTAGGGTGAATAAGGAGATGTGTGATGGAGTCAATACTCGGGTTAGACCGGGTGAGAGGAGACTCTGAGTACTGCAGATGCATTAGGGATCAGGGATCAGGGATCAATTCTTAGCCCTTTTTTTTTTGCCTTGGTGATGGATGAGTTGACGCAATTCAGGAGGAGGTTCCATGGTGTATGTTATTTGCAGACGATATAGTACTGATTGATGAGATACGAGACTGAGTTAATGCTAGGTTGGATGTTTATAGACAAGTTATGGAGTCTAAAGGGTTCAGGTAGAGCAGGTGCAAAATGAAGTTTTTATAGTGCAAATTTAGTGTTGTTTGGATGTAGCAAATGTGGAAGTGACGCTTACAGCATAGACCAGTAAAAAGAGGGTTTTAAGTATCTTGGGTCCATAATCTAGGGTGGTGGGGACATTTAACGATGATGTCACACATTGCATTGGGGCAACATGGATGAAATGAAGGCTTGCCTTTGATGTTCTGTGCGACAAGAAGTACCACCTAAACTTAGAGATAAGTTCTACAGAGTGTGTAAGGGGTGAAGTGCTGACCAATCAAGAACTCATATATTTAGAAGATGCATGTTCCGGATATGAAAATTTTGAGATAAATGTGTGGACATACTAGGAGCGATAAGATTCGAAATGAGATTATCTAGGAGAGGGTGGGAGTGGCCACAAGACGAGGAAAGCTAGTCTGAGATAGTTTGGGCATGTAAAAAGGAGGTGTGCTGCCCTAGTAAGGAGGTGCAATCGGGTGTTGGTTGTACGAGGTATGCAGAGGGGTGAGGTGGACCCAAAAAGTACTGGGGAGAGGTGATCAGATAAGACATGATGGTACTTCATATTATCGTGGAAATGACTCTAGATAGGATGGAGTGGAGGTCACATATTGAGGTAGAAGGTTAGTAGCGGTTAAGTGTTGTCTTGCCTTGCGAAGATTTAGGCGTATTAGTGCATGTCGTATTACTAGTCAAACCTTTCTTGCCATATGTAGTTATTGTTTCTTGTAGACTTTACATAACTTTTTTTATTAACTGCTATGCTTTCTTCATTGTTTCTTCTTTCGTTACTAAGATTTGATGCACTTGAGTCGAGGGTCTTTTGGAAACAATCTCTACCTCCATGAGGAAGTGGTAAGGTCTGCGTATACTCTATCCTCTCTAGACCCCACTTAGTGGAGTTTCACTGGGCATGTTGTTGTTGCTATCCTAAAGTCTAATCAAATCCTTGTCTAAAATCACTATGTTAAGATATGTCATTAGGCCCATATGCCATATCTTAACATGGTATCAGAGCCAGAGATGATGGCCCCATTTAGAAGTGTTCATGCTCCAATTGAGGTCTGAGCGTGCAGGGGAGTGTTAAGACGTCTCACGTCGGTAGAGGGATGGGAATTTGGTCTCCTTATATGGACTTGGACAAACCTCCCCTCATGAGCTAGCTTTTGGGGTTGAGTTAGGTCCAGATGTCATATCTTAACAATCTCAAACTGAGTTTCCATATATCCAAAAATAGTAGTACGATGAAAGAATCCAGAAAATCTGACTTTTATACTCGGAGAATCTTCATCACGATCGCCACGTGCCCACACGACTGCCTACAGGTTGATCGGGACCCAACACGATCATTACCACGCCTTTGGGAAATCCAAAAAAGCCTAGACCTTGACCCCCTATTTACTCTACGCGATTGCGGCAGGGGAGCACACAATTGTGATGCACATCATTTTCCTTAACTTTGATCGTGATAACATTGCCTGTACCAGAAATCAGCATCAGCTGAAATGAAAAATTGTATACGAAACCCCTCAGATCTCAACCTAAACTGTACAAACAAGTCCCAAAATATTAAACCAAATAGGAAGTTCCAAAACATAAAATGGAACACACATGCTCCAAACTAAGGATTGGGTTATCACATAAAATACTTGTTTAAGGCCCATTCTTAATCACTTGCACTATTCTCATGTAATGAACTATCATCTTTATGAGGAGAACACAAGATCCTTCAGATCATTCTGAATTGGACCCTATTTGGTCTAAGTAGTCACCAGAGTCCAGATCAACTTGCCATTGTTACCAATTAATGGCATATGCAGTTTACAATAGAATATTATGGCTGTAGGATAATTATTCACCAATGAATGGTCAGTGTTTTGGAAAGCGAGAAGCGGAAAAAAGCGACGAGGGCTTGCTTCACAGAAGCGAGAAGCGTGAAGTGAAGCGCACACTTTTTTTAAAAAAAAGCTACATTTAGTATAAAAATAAAATAATAATAAATAACTAAATAGAGGTAATATAGTCTTAGATTGAAAGAAATTACATACGCAAAAATACTCATAAGTCATAACATATAAAGCAAAAAAATCAAAAACATAATTAAATCACAAAGATTGAAACTCCTATTCTTCAACAAGGCTGCTAGACTGATCACAAAATTAAAAAAAAAAAAAAGCAAAAGAAGTGAAAAAAAACCCAGAGGCAGCAGTCAGTAATTAGAAACAGAGCAGGCAACAGAGATGAAGAAAAGAAGAGAAGAAGAAGAAAAAACTAGAGAAGTCGAAACTCAGAGAGATAAAGAGATGAAGCACAGGCGAAGATTGTATATTTCAGGAGAAAAGAAACTCATAGAGATGAACTAATAAACATTAGCTAAAAAAGAGATGAACAAAAAGTTACCTGCAGTCTCGGTCGAGGTTGAAGAGAGAGGCAGCCTCAGTCGAGATCGTCAGGAGGGAAAGAAGTATTGTGAAAGAAGAGCCGCGAGGAGAGAAAGAAGGGAAAGAGTCGTGAGGAGAGAGAAGGTTATATTTCAGATTTTTTTAAAAAAAACTAATTTCTTTTTAAAAAAACTAATTGTCGCCTTTTATTTTATTTTATAAAAAGCGCGTTTTATTGCGCTTTTGCCTTTCTTCATCTGAAGCGAGAGCTTTTTTCAGATCGCCTCCCCTCAAGATAAAAAAGCGCACAAGGGTCGCCTCGCTTTGAAGCGCGCTTTAAGCGTGCTTTTTTGCGCTTTTCATAACACTGTAATGGTCATGCTATGTTCATTCTAAGTATGCCAGTTTATATTCATATCTATTGACAGAAACTTAATATTCTTTCTGTTAGCTGAATCAATTTTACTTGTATTGGAAACTCCAATTTTGTAATTGATGAACGGAATTAGTTGTCTCTTCTATTTTACTGTACAAGGCAGTATTTACTAAAGACAAGATTAGTATTGGTATGTGATTGCATGCTCTTTTGCATAGAAAGGTCAGGAAAAGGAAGAGGGTGAAATACCGAGTGCCTAGCACTTTCTAGTTCCCATATCTCGGCTACTGTATGATCAAGTAGCCAGTATTGTGTTGATGTTAATCTTCTTGTTATTTCGAAAAGTTATACAAATGAAGGTACTTATAGCTTAATATTTTGAACAGAGACCCAAGATTTTGCGATCTAGATTGAATTATCAAGCAATAAATGTAGATACACTTCGGGCTCAGAATATGGAAGGATGGCCCTTCTTCAACCAGGTACTTGATTTGGAATCAATTTTTTTTTTGACATGTCCAACAATGTTATATTGAAATTTATTGAGAAGTTAACTCCCTTATTTACTATTACTAGTAATCGTGGAAATACTCTCTATTTTAGTATCCTTCCCCTTTGTTGGATTTTTGTTTCTGCGAAATGTTCTATTAAGTGACCAAAGTCCAGGAACTTGCAGTTCCTTTTTTTTGTTCTTTTTTTTTTTTGTCTTTCAGACAAACGTGAAACTAGAATTCATGGTTGACTTATGGGGAAAAAAGGAGAATTTTTAGATTTCCTTGTAATTCAGACAGTGATACTTTAAATTTGATTTTCCCCTGAAATTTGGTGATAGAACAAACCACAAATGGAAGTAACTTTTGAGTTTGAGCTTCCATATCTGATATTTTCGGAATCCTAATAAAAATTATCCATAGATCTTTATGAACTAAAGGATGGAACTTCTCCAGGAAGAAGTCTCTAGAGAAAAAAAAGGGTTTAAGATTTAATATAAAATGAATGTAATTATGGTATTAGAAACATAGTGAAAAGCATAAAGAAGAAGAGGAGAGTAATATTCTAGAGATCCCATATACTGTTCCTTCAAACAACCTACACTTTTCTCATGTTTTAAGAGACTTGGAAAGCTTCAAACCACTAATTTTACCATAAAACCAAATTATACATCTAATTTATTGTAGATATGCACAGGATTTTTTTTTGATCAATAATGTGTAGTTCTGTTGAATATACTTTGCTAATTTGTTGTTTCCAGTTAGTTGCCTTTAATGCCATATTCCCACACACACTTCGGATTACATTTTCCTTCAGCTGTGTTACAGTAAATTTTGATTGTACTGTTCCAATCTGTTCGTGTATTATGTCTATTAGGATGAATCTGAAATTCAGTAGAAATTTAGCCTTCTATGGATAATCATCCTCAACTAACCTCCCCCCCCCCCCCCCCCAACCCCAAAACCCCCAACAAATCTCTTTCCTACATAAGGTTTAAGAGCACCCTTCATATCACAGTGACTTAACCTTTGTCCAATTGAAAACGATAACACGATGGATAGGTCACTGTAAGTTCTAACAAGTGGATAAAAATGGCATGTTTCCTTGCACATTTTCTCTATAGAAGAGACTAGAGAGAAAGCATATTAATTAACTAGAAAGCAAACCCAAAAGTTAAATCATTGTTGGCCTAGCAAAATAAGTTCATATATCTTCTCATCTATTTCTTTCTTTAGTAGCATATTTCCAAATTTTATGATTTACATCTTCAATCATCTCCTGAAGGTTACTGCAGATTTGACCCCGCTGAATGCACAAAAGGTGGCAGTAAAGTTTGATTATTTCAAAATTGCTGGACTAGTAAGTTCCACATTCTTTACTCATCACTTTACAACAAAGGGTTATTTCGCTTGTAATGCATTCTTACACTTAACTGTTCCAAATACAAAAATAAAAAATAAAAAAATAGAATGAGTTGGTAATGTAATTTCATGACAGTTTGTGCGGGTGTACATAACATGAGAGCACAAATATGGATCAGTATTTTTTAATCTTTTTTCTAACCTTTTCTTTTCTTCGTCTCTTCGTTGTTGGCTGGCAGATACCTATTAAAGCTCCTGGAAGAGCTAAAGGCGAGCTTGAAATTACTTACTTGGATGAAGAATTGAGGTGAGTTTATGTATTGTATTGTAATTCATGTATTCTTGAGTCTATAGAAGCCGACACTTAGTTCTGTTAACATGGTATGTCTACTTCATTCTAGTTTCTTGGTTGCATGTGTATGCTGTGTCATATAGTACACAGTTTTGTAAAATAAAATTAATATTATAAAACAAAATTCTGAATAAATATCTAAAGACATCAAACATTAGCAGTCATAGCTTACATTGCTCAAATTAATATTTAAATTAGGACCTCTTTGAAACAGCCTCTCTATCTCAAAGAGGTAGTGGTTAAAACTGCTTACACTCTACCCTCCCTAGACCACACTTTGGCACACTTTGTGGGATTTCATTGAGTATGTTATTTTTGTTGGCTTATAAAAGAAGTTATATTTCCTACTCGCAGCTACTTCCGGTTTACAGATTAGATCCATGGCTTCTTCCACCTTCTCTCTCCCTTTTTTCTTCATTCTTGTTCAATTTTTTTATTCTCTTTCCCATTTCTTTATTTAAAAAATCAAACTAGCAGAAACTTTCCTGAAGACTATGTTGTATGGAGCAATAATTTTTTCTGCAATAATTAGAAATAAAGAAACCAAGAGATTGAAATATCAATTCGTGGAGTTAAATGGCTTGTTATATGGAGAAATATTTGTATGTATTTTTAAGATTGTCCTTTTTTTGTTATGAAGTGGATTATAAACTCAAGAAGGGTAAAGAGAAGCTCTTTGTTGATCAGTAAAGAGAAATTTACTCTACAACAACAAACCTTAAAATATTAATACTATTTATCTTAAGGGTGTGAAAAATGGACGATTTGGACATTATTATAGGGTATTAATAAACATTATTAATCAAATACTTTCAATTAAGTTTTCATATATATGACATAAACTTATACAAACAAGTCCTTTGTGTCTAGATAGTTGGGTTTGCCCAAATTTAGTCTATCAATAATGTATCTTATGTTCAACTCATTAAATTCTGAACGGATTGTACGGGTCAAATGAGTTTTAGGCCGATTATGTCACCACATTCTAATTTGTTATCCAATTTTTGACAGGGTATCAAGAGGTGATCTTGGCAACTTGTTCATTTTGAAAATGGTTGACCCTTCTTACAAGGTCCCTACTTGAGATTGCTACTATCAACTTTATAGAGTTACTAATTAGTGTCACATCTTATATTATAATATTATATGCCAAGTCTGTGCAAAGGATTCACAAGCATTTTCTCTCTTCAATTTAACTACTGTACAAAATTGCATTAAAAAACTTAAGTAATTTCAAACTTGTGTATATGCAGCTTTATCAAAATTTCTTGTCATAATCAACATGACCT</genome_strand>
        <mrna_strand>AAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCCATTGAACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAG.................................................................................................ATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAACTCTGCTTAATGGAAAATGGGAACTTATATACACTACATCAAAGTCTATTTTACAGATTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCCAAGATTTTGCGATCTAGATTGAATTATCAAGCAATAAATGTAGATACACTTCGGGCTCAGAATATGGAAGGATGGCCCTTCTTCAACCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTGCAGATTTGACCCCGCTGAATGCACAAAAGGTGGCAGTAAAGTTTGATTATTTCAAAATTGCTGGACTA.................................................................................................................................................................................................................................................ATACCTATTAAAGCTCCTGGAAGAGCTAAAGGCGAGCTTGAAATTACTTACTTGGATGAAGAATTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATCAAGAGGTGATCTTGGCAACTTGTTCATTTTGAAAATGGTTGACCCTTCTTACAAGGTCCCTACTTGAGATTGCTACTATCAACTTTATAGAGTTACTAATTAGTGTCACATCTTATATTATAATATTATATGCCAAGTCTGTGCAAAGGATTCACAAGCATTTTCTCTCTTC-ATTTAACTA--....................................................CTGTA-CAAAATTTCTTGTCATAATC-ACATGACCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E282634" ref_strand="+" ref_description="SGN-E282634 [cLER-15-A10]">
      <seq>ttcttcaagccattgaacctcttgatcgtggcgctgacgccactcctcaagaccagcagataattgatcagattgcttgcagacttgaagcttgcaatccaacaaaggagcccctcaactcaactctgcttaatggaaaatgggaacttatatacactacatcaaagtctattttacagattcagagacccaagattttgcgatctagattgaattatcaagcaataaatgtagatacacttcgggctcagaatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="+" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="14782" stop="20678"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15082" g_stop="15152" g_length="71"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="71" r_length="71" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15153" i_stop="15249" i_length="97">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15250" g_stop="15363" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="185" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15364" i_stop="20306" i_length="4943">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.665" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20307" g_stop="20378" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="186" r_stop="257" r_length="72" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="+" ref_id="SGN-E282634" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>257</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E282634" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15082" e_stop="15152"/>
          <exon e_start="15250" e_stop="15363"/>
          <exon e_start="20307" e_stop="20378"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCTTCAAGCCATTGAACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAGGTTTTGCTTCACCTCATTGCAATTATCCAGTTTAGGTTTAGTTTTCTGACTGATTGTGTGTTTCTTTTAGTTTCTCAACACAATGTTATTTGATTAGATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAACTCTGCTTAATGGAAAATGGGAACTTATATACACTACATCAAAGTCTATTTTACAGATTCAGGTGAAAACTATAACCATCATTCAAGTGTTTTACTGAATGTCATGAAAATTATGCTTCTAGGTCCTTTAATGGAACTGTATACATTGTTAAAATTCGTACCAAGCTGGGTAAAATGTTGAGTTTGTGAATGTCACCATTCAACTGTATATACACATTTTATGAGTTTGTGAGAATCTATACGATGCTTTGAAAGGAAATGGAAATCTGTACAGGAGACGGGGAAGGACATTCAATACATATATCTATAGAGTCTATCAAAATTATAACAACTTTGGCTGCTTTGTATGGATTGAAACATGTCTAGGTCACTAGAAAAATGCAATCATTCTCCCAGAAGTTGTACAAACAAAGGATGGGGAGACATTCCCACCAAAATTCCTCGAGACATTGCCACCAAAATTCCTCAATTTCTGGGAAATCACAGCAGTCTTAGATTTAATCTCTCTTCCCCATGAATATCACATGTTGAGTAGGCTTCCACAATTGGCATCTTTTACCAAGGTTTCTCCCAATGAAACCTGAAATGGTAATGTTGCAGATCTGGATATGAAAAGCTCTCAAGTTATAGCCTAAAGTTTGGTCGAATGCTTCAACAATTCCTTTCATCATAGCACAATCCGGAAGCTATACAAAAATGGTTCATTAGTAGATGGAAAATGTGCTTCACCTTCAAGGTGATACCGGTGAACCATAATCAATTCATTTTTGAGCTTCTATCGAGGAAGGAGGCGGTTATAGCTGGTCATTGGTTTTGGAACGGGAGACGGTTGACTCTTCAATGGTGGTCTTTGATCGCTGGATCAGAACTCGCACCCAAGAAAGAAGAACATCACATGATTAAAGCTTTTGGGATCCCAACACATCAGTATCATCAAAGGCGCGCTTAAGCCCTGAAGCGAGGCTCAAAACATGTTGAGCGCTTGACCTTGCTTTTTGTGCGCTTCAGTGTTGTCATCAAGGTTTTAAGGCAAACTTTTCCTTGATAATGAGCCTCTTATGAAGAAGTGACACTAAACGATTGATATTTCACTTAATCATAAAATAATTCTATTTCTTTGGTCATAAATGTGTCATTCATGATTATAATTATTTGTCTTGGACTAAACATATATAATTGTATCTTTTTCTCCCTTTGCGGCTTTTTTCATTAAAGCCCATGCTTTATTTGAGCTTTGCGCTTAAAGCATCACGGACCTTTGAGCTTTATGCGCTGTTCGCCTTTGATAACACCGCGAACACATGCATGGTCATTAAACAGGTTTAATAACATTTGGGAATTTAAGTGGGGCTTTATGGGAATTGATGAGGACACAAAGAATATGAACCAGTTAACTTGGGCCAGAATATACATAAAGAAAGCCTCCCATAGAGTGTTGCTGTCAAACATTAATTGACATTGATGAAGGAGGATGGAGATTTGAAATCTCAATCACATCGGATATCCATATAAAGATGAGGCCAATTGGAAGAGTGGAAAACATATCTGGAAATGAAACTGGCCCGATGTTTATATTAGGGTGAATAAGGAGATGTGTGATGGAGTCAATACTCGGGTTAGACCGGGTGAGAGGAGACTCTGAGTACTGCAGATGCATTAGGGATCAGGGATCAGGGATCAATTCTTAGCCCTTTTTTTTTTGCCTTGGTGATGGATGAGTTGACGCAATTCAGGAGGAGGTTCCATGGTGTATGTTATTTGCAGACGATATAGTACTGATTGATGAGATACGAGACTGAGTTAATGCTAGGTTGGATGTTTATAGACAAGTTATGGAGTCTAAAGGGTTCAGGTAGAGCAGGTGCAAAATGAAGTTTTTATAGTGCAAATTTAGTGTTGTTTGGATGTAGCAAATGTGGAAGTGACGCTTACAGCATAGACCAGTAAAAAGAGGGTTTTAAGTATCTTGGGTCCATAATCTAGGGTGGTGGGGACATTTAACGATGATGTCACACATTGCATTGGGGCAACATGGATGAAATGAAGGCTTGCCTTTGATGTTCTGTGCGACAAGAAGTACCACCTAAACTTAGAGATAAGTTCTACAGAGTGTGTAAGGGGTGAAGTGCTGACCAATCAAGAACTCATATATTTAGAAGATGCATGTTCCGGATATGAAAATTTTGAGATAAATGTGTGGACATACTAGGAGCGATAAGATTCGAAATGAGATTATCTAGGAGAGGGTGGGAGTGGCCACAAGACGAGGAAAGCTAGTCTGAGATAGTTTGGGCATGTAAAAAGGAGGTGTGCTGCCCTAGTAAGGAGGTGCAATCGGGTGTTGGTTGTACGAGGTATGCAGAGGGGTGAGGTGGACCCAAAAAGTACTGGGGAGAGGTGATCAGATAAGACATGATGGTACTTCATATTATCGTGGAAATGACTCTAGATAGGATGGAGTGGAGGTCACATATTGAGGTAGAAGGTTAGTAGCGGTTAAGTGTTGTCTTGCCTTGCGAAGATTTAGGCGTATTAGTGCATGTCGTATTACTAGTCAAACCTTTCTTGCCATATGTAGTTATTGTTTCTTGTAGACTTTACATAACTTTTTTTATTAACTGCTATGCTTTCTTCATTGTTTCTTCTTTCGTTACTAAGATTTGATGCACTTGAGTCGAGGGTCTTTTGGAAACAATCTCTACCTCCATGAGGAAGTGGTAAGGTCTGCGTATACTCTATCCTCTCTAGACCCCACTTAGTGGAGTTTCACTGGGCATGTTGTTGTTGCTATCCTAAAGTCTAATCAAATCCTTGTCTAAAATCACTATGTTAAGATATGTCATTAGGCCCATATGCCATATCTTAACATGGTATCAGAGCCAGAGATGATGGCCCCATTTAGAAGTGTTCATGCTCCAATTGAGGTCTGAGCGTGCAGGGGAGTGTTAAGACGTCTCACGTCGGTAGAGGGATGGGAATTTGGTCTCCTTATATGGACTTGGACAAACCTCCCCTCATGAGCTAGCTTTTGGGGTTGAGTTAGGTCCAGATGTCATATCTTAACAATCTCAAACTGAGTTTCCATATATCCAAAAATAGTAGTACGATGAAAGAATCCAGAAAATCTGACTTTTATACTCGGAGAATCTTCATCACGATCGCCACGTGCCCACACGACTGCCTACAGGTTGATCGGGACCCAACACGATCATTACCACGCCTTTGGGAAATCCAAAAAAGCCTAGACCTTGACCCCCTATTTACTCTACGCGATTGCGGCAGGGGAGCACACAATTGTGATGCACATCATTTTCCTTAACTTTGATCGTGATAACATTGCCTGTACCAGAAATCAGCATCAGCTGAAATGAAAAATTGTATACGAAACCCCTCAGATCTCAACCTAAACTGTACAAACAAGTCCCAAAATATTAAACCAAATAGGAAGTTCCAAAACATAAAATGGAACACACATGCTCCAAACTAAGGATTGGGTTATCACATAAAATACTTGTTTAAGGCCCATTCTTAATCACTTGCACTATTCTCATGTAATGAACTATCATCTTTATGAGGAGAACACAAGATCCTTCAGATCATTCTGAATTGGACCCTATTTGGTCTAAGTAGTCACCAGAGTCCAGATCAACTTGCCATTGTTACCAATTAATGGCATATGCAGTTTACAATAGAATATTATGGCTGTAGGATAATTATTCACCAATGAATGGTCAGTGTTTTGGAAAGCGAGAAGCGGAAAAAAGCGACGAGGGCTTGCTTCACAGAAGCGAGAAGCGTGAAGTGAAGCGCACACTTTTTTTAAAAAAAAGCTACATTTAGTATAAAAATAAAATAATAATAAATAACTAAATAGAGGTAATATAGTCTTAGATTGAAAGAAATTACATACGCAAAAATACTCATAAGTCATAACATATAAAGCAAAAAAATCAAAAACATAATTAAATCACAAAGATTGAAACTCCTATTCTTCAACAAGGCTGCTAGACTGATCACAAAATTAAAAAAAAAAAAAAGCAAAAGAAGTGAAAAAAAACCCAGAGGCAGCAGTCAGTAATTAGAAACAGAGCAGGCAACAGAGATGAAGAAAAGAAGAGAAGAAGAAGAAAAAACTAGAGAAGTCGAAACTCAGAGAGATAAAGAGATGAAGCACAGGCGAAGATTGTATATTTCAGGAGAAAAGAAACTCATAGAGATGAACTAATAAACATTAGCTAAAAAAGAGATGAACAAAAAGTTACCTGCAGTCTCGGTCGAGGTTGAAGAGAGAGGCAGCCTCAGTCGAGATCGTCAGGAGGGAAAGAAGTATTGTGAAAGAAGAGCCGCGAGGAGAGAAAGAAGGGAAAGAGTCGTGAGGAGAGAGAAGGTTATATTTCAGATTTTTTTAAAAAAAACTAATTTCTTTTTAAAAAAACTAATTGTCGCCTTTTATTTTATTTTATAAAAAGCGCGTTTTATTGCGCTTTTGCCTTTCTTCATCTGAAGCGAGAGCTTTTTTCAGATCGCCTCCCCTCAAGATAAAAAAGCGCACAAGGGTCGCCTCGCTTTGAAGCGCGCTTTAAGCGTGCTTTTTTGCGCTTTTCATAACACTGTAATGGTCATGCTATGTTCATTCTAAGTATGCCAGTTTATATTCATATCTATTGACAGAAACTTAATATTCTTTCTGTTAGCTGAATCAATTTTACTTGTATTGGAAACTCCAATTTTGTAATTGATGAACGGAATTAGTTGTCTCTTCTATTTTACTGTACAAGGCAGTATTTACTAAAGACAAGATTAGTATTGGTATGTGATTGCATGCTCTTTTGCATAGAAAGGTCAGGAAAAGGAAGAGGGTGAAATACCGAGTGCCTAGCACTTTCTAGTTCCCATATCTCGGCTACTGTATGATCAAGTAGCCAGTATTGTGTTGATGTTAATCTTCTTGTTATTTCGAAAAGTTATACAAATGAAGGTACTTATAGCTTAATATTTTGAACAGAGACCCAAGATTTTGCGATCTAGATTGAATTATCAAGCAATAAATGTAGATACACTTCGGGCTCAGAATATG</genome_strand>
        <mrna_strand>TTCTTCAAGCCATTGAACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAG.................................................................................................ATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAACTCTGCTTAATGGAAAATGGGAACTTATATACACTACATCAAAGTCTATTTTACAGATTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCCAAGATTTTGCGATCTAGATTGAATTATCAAGCAATAAATGTAGATACACTTCGGGCTCAGAATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E412292" ref_strand="-" ref_description="SGN-E412292 [STM-16-E11]">
      <seq>atcaaagtcaattttacagattcagagacccaagattttgcgatctagattgaactaccaagcaataaatgtcgatacacttcgggctcagaatatggaaggagggcccttcttcaaccaggttactgcagatttgacccctctgaatgcacaaaaggtggcagtaaagtttgattatttcaaaattgctggactaatacctattaaagctcctggaagagctagaggtgagcttgaaattacttacttggatgaagaattgagggtatcaagaggtgatcttggcaacttgttcattttgaaaatggttgacccttcttacaaggtccctacttgagattgctactatcaactttacagagttactaattagtgtcacatcttatattattattatgctaagtctgtgcaaatgattcgcaaggattttctctcttcaatttaactgtacaaaattgcattaaaaaactgagtaatttcaaacttgtgtatatgcaaatttatcacaatttcttgtcataatcaaacacgaccctagtattgtgtacaaacatgcacatttttcttttcttcaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="+" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="20004" stop="23730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20307" g_stop="20402" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="26" r_stop="121" r_length="96" r_score="0.958"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20403" i_stop="21696" i_length="1294">
            <donor d_prob="0.999" d_score="0.96"/>
            <acceptor a_prob="0.971" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21697" g_stop="21771" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="122" r_stop="196" r_length="75" r_score="0.987"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="21772" i_stop="22012" i_length="241">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="22013" g_stop="22080" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="264" r_length="68" r_score="0.971"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="22081" i_stop="23136" i_length="1056">
            <donor d_prob="0.998" d_score="0.96"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="23137" g_stop="23465" g_length="329"/>
          <reference_exon_boundary r_type="cDNA" r_start="265" r_stop="584" r_length="320" r_score="0.888"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="+" ref_id="SGN-E412292" ref_strand="-">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>568</cumulative_length_of_scored_exons>
        <coverage percentage="0.973" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E412292" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="20307" e_stop="20402"/>
          <exon e_start="21697" e_stop="21771"/>
          <exon e_start="22013" e_stop="22080"/>
          <exon e_start="23137" e_stop="23465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACCCAAGATTTTGCGATCTAGATTGAATTATCAAGCAATAAATGTAGATACACTTCGGGCTCAGAATATGGAAGGATGGCCCTTCTTCAACCAGGTACTTGATTTGGAATCAATTTTTTTTTTGACATGTCCAACAATGTTATATTGAAATTTATTGAGAAGTTAACTCCCTTATTTACTATTACTAGTAATCGTGGAAATACTCTCTATTTTAGTATCCTTCCCCTTTGTTGGATTTTTGTTTCTGCGAAATGTTCTATTAAGTGACCAAAGTCCAGGAACTTGCAGTTCCTTTTTTTTGTTCTTTTTTTTTTTTGTCTTTCAGACAAACGTGAAACTAGAATTCATGGTTGACTTATGGGGAAAAAAGGAGAATTTTTAGATTTCCTTGTAATTCAGACAGTGATACTTTAAATTTGATTTTCCCCTGAAATTTGGTGATAGAACAAACCACAAATGGAAGTAACTTTTGAGTTTGAGCTTCCATATCTGATATTTTCGGAATCCTAATAAAAATTATCCATAGATCTTTATGAACTAAAGGATGGAACTTCTCCAGGAAGAAGTCTCTAGAGAAAAAAAAGGGTTTAAGATTTAATATAAAATGAATGTAATTATGGTATTAGAAACATAGTGAAAAGCATAAAGAAGAAGAGGAGAGTAATATTCTAGAGATCCCATATACTGTTCCTTCAAACAACCTACACTTTTCTCATGTTTTAAGAGACTTGGAAAGCTTCAAACCACTAATTTTACCATAAAACCAAATTATACATCTAATTTATTGTAGATATGCACAGGATTTTTTTTTGATCAATAATGTGTAGTTCTGTTGAATATACTTTGCTAATTTGTTGTTTCCAGTTAGTTGCCTTTAATGCCATATTCCCACACACACTTCGGATTACATTTTCCTTCAGCTGTGTTACAGTAAATTTTGATTGTACTGTTCCAATCTGTTCGTGTATTATGTCTATTAGGATGAATCTGAAATTCAGTAGAAATTTAGCCTTCTATGGATAATCATCCTCAACTAACCTCCCCCCCCCCCCCCCCCAACCCCAAAACCCCCAACAAATCTCTTTCCTACATAAGGTTTAAGAGCACCCTTCATATCACAGTGACTTAACCTTTGTCCAATTGAAAACGATAACACGATGGATAGGTCACTGTAAGTTCTAACAAGTGGATAAAAATGGCATGTTTCCTTGCACATTTTCTCTATAGAAGAGACTAGAGAGAAAGCATATTAATTAACTAGAAAGCAAACCCAAAAGTTAAATCATTGTTGGCCTAGCAAAATAAGTTCATATATCTTCTCATCTATTTCTTTCTTTAGTAGCATATTTCCAAATTTTATGATTTACATCTTCAATCATCTCCTGAAGGTTACTGCAGATTTGACCCCGCTGAATGCACAAAAGGTGGCAGTAAAGTTTGATTATTTCAAAATTGCTGGACTAGTAAGTTCCACATTCTTTACTCATCACTTTACAACAAAGGGTTATTTCGCTTGTAATGCATTCTTACACTTAACTGTTCCAAATACAAAAATAAAAAATAAAAAAATAGAATGAGTTGGTAATGTAATTTCATGACAGTTTGTGCGGGTGTACATAACATGAGAGCACAAATATGGATCAGTATTTTTTAATCTTTTTTCTAACCTTTTCTTTTCTTCGTCTCTTCGTTGTTGGCTGGCAGATACCTATTAAAGCTCCTGGAAGAGCTAAAGGCGAGCTTGAAATTACTTACTTGGATGAAGAATTGAGGTGAGTTTATGTATTGTATTGTAATTCATGTATTCTTGAGTCTATAGAAGCCGACACTTAGTTCTGTTAACATGGTATGTCTACTTCATTCTAGTTTCTTGGTTGCATGTGTATGCTGTGTCATATAGTACACAGTTTTGTAAAATAAAATTAATATTATAAAACAAAATTCTGAATAAATATCTAAAGACATCAAACATTAGCAGTCATAGCTTACATTGCTCAAATTAATATTTAAATTAGGACCTCTTTGAAACAGCCTCTCTATCTCAAAGAGGTAGTGGTTAAAACTGCTTACACTCTACCCTCCCTAGACCACACTTTGGCACACTTTGTGGGATTTCATTGAGTATGTTATTTTTGTTGGCTTATAAAAGAAGTTATATTTCCTACTCGCAGCTACTTCCGGTTTACAGATTAGATCCATGGCTTCTTCCACCTTCTCTCTCCCTTTTTTCTTCATTCTTGTTCAATTTTTTTATTCTCTTTCCCATTTCTTTATTTAAAAAATCAAACTAGCAGAAACTTTCCTGAAGACTATGTTGTATGGAGCAATAATTTTTTCTGCAATAATTAGAAATAAAGAAACCAAGAGATTGAAATATCAATTCGTGGAGTTAAATGGCTTGTTATATGGAGAAATATTTGTATGTATTTTTAAGATTGTCCTTTTTTTGTTATGAAGTGGATTATAAACTCAAGAAGGGTAAAGAGAAGCTCTTTGTTGATCAGTAAAGAGAAATTTACTCTACAACAACAAACCTTAAAATATTAATACTATTTATCTTAAGGGTGTGAAAAATGGACGATTTGGACATTATTATAGGGTATTAATAAACATTATTAATCAAATACTTTCAATTAAGTTTTCATATATATGACATAAACTTATACAAACAAGTCCTTTGTGTCTAGATAGTTGGGTTTGCCCAAATTTAGTCTATCAATAATGTATCTTATGTTCAACTCATTAAATTCTGAACGGATTGTACGGGTCAAATGAGTTTTAGGCCGATTATGTCACCACATTCTAATTTGTTATCCAATTTTTGACAGGGTATCAAGAGGTGATCTTGGCAACTTGTTCATTTTGAAAATGGTTGACCCTTCTTACAAGGTCCCTACTTGAGATTGCTACTATCAACTTTATAGAGTTACTAATTAGTGTCACATCTTATATTATAATATTATATGCCAAGTCTGTGCAAAGGATTCACAAGCATTTTCTCTCTTCAATTTAACTACTGTACAAAATTGCATTAAAAAACTTAAGTAATTTCAAACTTGTGTATATGCAGCTTTATCAAAATTTCTTGTCATAATC-AACATGA-CCTAGTGTTGTGTACAACAACAAAACACATTTTTCTTCTGTTCATCTACTTAAT</genome_strand>
        <mrna_strand>AGACCCAAGATTTTGCGATCTAGATTGAACTACCAAGCAATAAATGTCGATACACTTCGGGCTCAGAATATGGAAGGAGGGCCCTTCTTCAACCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTGCAGATTTGACCCCTCTGAATGCACAAAAGGTGGCAGTAAAGTTTGATTATTTCAAAATTGCTGGACTA.................................................................................................................................................................................................................................................ATACCTATTAAAGCTCCTGGAAGAGCTAGAGGTGAGCTTGAAATTACTTACTTGGATGAAGAATTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATCAAGAGGTGATCTTGGCAACTTGTTCATTTTGAAAATGGTTGACCCTTCTTACAAGGTCCCTACTTGAGATTGCTACTATCAACTTTACAGAGTTACTAATTAGTGTCACATCTTATATTAT--TA-T-TATGCTAAGTCTGTGCAAATGATTCGCAAGGATTTTCTCTCTTCAATTT-A--ACTGTACAAAATTGCATTAAAAAAC-TGAGTAATTTCAAACTTGTGTATATGCAAATTTATCACAATTTCTTGTCATAATCAAACACGACCCTAGTATTGTGTAC-A-AAC-ATGCACATTTTTCTTTTCTTCAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303649" ref_strand="+" ref_description="SGN-E303649 [cLEY-6-G15](-)">
      <seq>ggtggatccatgctagtaattggttcagcagctggagtagcatttatgggaatggaaaaagtcgacttcttttggtatatgagaaaggttagtggttttgcttttgctggttatgctgccggtattgcttcgtatcttgcagtacataatctcgatatctcactcccaacagctctggctcaaattcctttccttcatggatcttgatgtccttggagctatcagtaaatctgatcggttgtgtattctctgcttcaagttaatgaccagaacatatgaacacaaatccagaacctttagtggtggagatgaaaatgccatatatcaatctctttagaactaccagtgtgttggcctgggttggggattaaagccccacataatgtaatttattgattctaatagtttaataatataactgtggagtaatacctccatcttcagaaaaaaaaaaaaaaac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="45944" stop="44820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45644" g_stop="45558" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45557" i_stop="45478" i_length="80">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45477" g_stop="45120" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="445" r_length="358" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="446" polyA_stop="460"/>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-E303649" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303649" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45644" e_stop="45558"/>
          <exon e_start="45477" e_stop="45120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGATCCATGCTAGTAATTGGTTCAGCAGCTGGAGTAGCATTTATGGGAATGGAAAAAGTCGACTTCTTTTGGTATATGAGAAAGGTACATATGCTGCTGCCTGCTATTTTGATGCACCACTTTGAACATTTCTGCTTCAATATTTGTCACTCTTATCTCTGCAGGTTAGTGGTTTTGCTTTTGCTGGTTATGCTGCCGGTATTGCTTCGTATCTTGCAGTACATAATCTCGATATCTCACTCCCAACAGCTCTGGCTCAAATTCCTTTCCTTCATGGATCTTGATGTCCTTGGAGCTATCAGTAAATCTGATCGGTTGTGTATTCTCTGCTTCAAGTTAATGACCAGAACATATGAACACAAATCCAGAACCTTTAGTGGTGGAGATGAAAATGCCATATATCAATCTCTTTAGAACTACCAGTGTGTTGGCCTGGGTTGGGGATTAAAGCCCCACATAATGTAATTTATTGATTCTAATAGTTTAATAATGTAACTGTGGAGTAATACCTCCATCTTCAGA</genome_strand>
        <mrna_strand>GGTGGATCCATGCTAGTAATTGGTTCAGCAGCTGGAGTAGCATTTATGGGAATGGAAAAAGTCGACTTCTTTTGGTATATGAGAAAG................................................................................GTTAGTGGTTTTGCTTTTGCTGGTTATGCTGCCGGTATTGCTTCGTATCTTGCAGTACATAATCTCGATATCTCACTCCCAACAGCTCTGGCTCAAATTCCTTTCCTTCATGGATCTTGATGTCCTTGGAGCTATCAGTAAATCTGATCGGTTGTGTATTCTCTGCTTCAAGTTAATGACCAGAACATATGAACACAAATCCAGAACCTTTAGTGGTGGAGATGAAAATGCCATATATCAATCTCTTTAGAACTACCAGTGTGTTGGCCTGGGTTGGGGATTAAAGCCCCACATAATGTAATTTATTGATTCTAATAGTTTAATAATATAACTGTGGAGTAATACCTCCATCTTCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E544083" ref_strand="+" ref_description="SGN-E544083 [TUS-66-D18]">
      <seq>ggtggatccatgctagtaattggttcagcagctggagtagcatttatgggaatggaaaaagtcgacttcttttggtatatgagaaaggttagtggttttgcttttgctggttatgctgccggtattgcttcgtatcttgcagtacataatctcgatatctcactcccaacagctctggctcaaattcctttccttcatggatcttgatgtccttggagctatcagtaaatctgatcggttgtgtattctctgcttcaagttaatgaccagaacatatgaacacaaatccagaacctttagtggtggagatgaaaatgccatatatcaatctctttagaactaccagtgtgttggcctgggttggggattaaagccccacataatgtaatttattgattctaatagtttaataatgtaactgtggagtaatacctccatcttcagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="45944" stop="44820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45644" g_stop="45558" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45557" i_stop="45478" i_length="80">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45477" g_stop="45120" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="445" r_length="358" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-E544083" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544083" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45644" e_stop="45558"/>
          <exon e_start="45477" e_stop="45120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGATCCATGCTAGTAATTGGTTCAGCAGCTGGAGTAGCATTTATGGGAATGGAAAAAGTCGACTTCTTTTGGTATATGAGAAAGGTACATATGCTGCTGCCTGCTATTTTGATGCACCACTTTGAACATTTCTGCTTCAATATTTGTCACTCTTATCTCTGCAGGTTAGTGGTTTTGCTTTTGCTGGTTATGCTGCCGGTATTGCTTCGTATCTTGCAGTACATAATCTCGATATCTCACTCCCAACAGCTCTGGCTCAAATTCCTTTCCTTCATGGATCTTGATGTCCTTGGAGCTATCAGTAAATCTGATCGGTTGTGTATTCTCTGCTTCAAGTTAATGACCAGAACATATGAACACAAATCCAGAACCTTTAGTGGTGGAGATGAAAATGCCATATATCAATCTCTTTAGAACTACCAGTGTGTTGGCCTGGGTTGGGGATTAAAGCCCCACATAATGTAATTTATTGATTCTAATAGTTTAATAATGTAACTGTGGAGTAATACCTCCATCTTCAGA</genome_strand>
        <mrna_strand>GGTGGATCCATGCTAGTAATTGGTTCAGCAGCTGGAGTAGCATTTATGGGAATGGAAAAAGTCGACTTCTTTTGGTATATGAGAAAG................................................................................GTTAGTGGTTTTGCTTTTGCTGGTTATGCTGCCGGTATTGCTTCGTATCTTGCAGTACATAATCTCGATATCTCACTCCCAACAGCTCTGGCTCAAATTCCTTTCCTTCATGGATCTTGATGTCCTTGGAGCTATCAGTAAATCTGATCGGTTGTGTATTCTCTGCTTCAAGTTAATGACCAGAACATATGAACACAAATCCAGAACCTTTAGTGGTGGAGATGAAAATGCCATATATCAATCTCTTTAGAACTACCAGTGTGTTGGCCTGGGTTGGGGATTAAAGCCCCACATAATGTAATTTATTGATTCTAATAGTTTAATAATGTAACTGTGGAGTAATACCTCCATCTTCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E548984" ref_strand="+" ref_description="SGN-E548984 [TUS-66-D18](-)">
      <seq>ggtggatccatgctagtaattggttcagcagctggagtagcatttatgggaatggaaaaagtcgacttcttttggtatatgagaaaggttagtggttttgcttttgctggttatgctgccggtattgcttcgtatcttgcagtacataatctcgatatctcactcccaacagctctggctcaaattcctttccttcatggatcttgatgtccttggagctatcagtaaatctgatcggttgtgtattctctgcttcaagttaatgaccagaacatatgaacacaaatccagaacctttagtggtggagatgaaaatgccatatatcaatctctttagaactaccagtgtgttggcctgggttggggattaaagccccacataatgtaatttattgattctaatagtttaataatgtaactgtggagtaatacctccatcttcagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="45944" stop="44820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45644" g_stop="45558" g_length="87"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="87" r_length="87" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45557" i_stop="45478" i_length="80">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45477" g_stop="45120" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="88" r_stop="445" r_length="358" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-E548984" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>445</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E548984" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45644" e_stop="45558"/>
          <exon e_start="45477" e_stop="45120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGTGGATCCATGCTAGTAATTGGTTCAGCAGCTGGAGTAGCATTTATGGGAATGGAAAAAGTCGACTTCTTTTGGTATATGAGAAAGGTACATATGCTGCTGCCTGCTATTTTGATGCACCACTTTGAACATTTCTGCTTCAATATTTGTCACTCTTATCTCTGCAGGTTAGTGGTTTTGCTTTTGCTGGTTATGCTGCCGGTATTGCTTCGTATCTTGCAGTACATAATCTCGATATCTCACTCCCAACAGCTCTGGCTCAAATTCCTTTCCTTCATGGATCTTGATGTCCTTGGAGCTATCAGTAAATCTGATCGGTTGTGTATTCTCTGCTTCAAGTTAATGACCAGAACATATGAACACAAATCCAGAACCTTTAGTGGTGGAGATGAAAATGCCATATATCAATCTCTTTAGAACTACCAGTGTGTTGGCCTGGGTTGGGGATTAAAGCCCCACATAATGTAATTTATTGATTCTAATAGTTTAATAATGTAACTGTGGAGTAATACCTCCATCTTCAGA</genome_strand>
        <mrna_strand>GGTGGATCCATGCTAGTAATTGGTTCAGCAGCTGGAGTAGCATTTATGGGAATGGAAAAAGTCGACTTCTTTTGGTATATGAGAAAG................................................................................GTTAGTGGTTTTGCTTTTGCTGGTTATGCTGCCGGTATTGCTTCGTATCTTGCAGTACATAATCTCGATATCTCACTCCCAACAGCTCTGGCTCAAATTCCTTTCCTTCATGGATCTTGATGTCCTTGGAGCTATCAGTAAATCTGATCGGTTGTGTATTCTCTGCTTCAAGTTAATGACCAGAACATATGAACACAAATCCAGAACCTTTAGTGGTGGAGATGAAAATGCCATATATCAATCTCTTTAGAACTACCAGTGTGTTGGCCTGGGTTGGGGATTAAAGCCCCACATAATGTAATTTATTGATTCTAATAGTTTAATAATGTAACTGTGGAGTAATACCTCCATCTTCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303648" ref_strand="+" ref_description="SGN-E303648 [cLEY-6-G15]">
      <seq>gtggatccatgctagtaattggttcagcagctggagtagcatttatgggaatggaaaaagtcgacttcttttggtatatgagaaaggttagtggttttgcttttgctggttatgctgccggtattgcttcgtatcttgcagtacataatctcgatatctcactcccaacagctctggctcaaattcctttccttcatggatcttgatgtccttggagctatcagtaaatctgatcggttgtgtattctctgcttcaagttaatgaccagaacatatgaacacaaatccagaacctttagtggtggagatgaaaatgccatatatcaatctctttagaactaccagtgtgttggcctgggttggggattaaagccccacataatgtaatttattgattctaatagtttaataatgtaactgtggagtaatacctccatcttcagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="45943" stop="44820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45643" g_stop="45558" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="86" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45557" i_stop="45478" i_length="80">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45477" g_stop="45120" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="87" r_stop="444" r_length="358" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-E303648" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>444</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303648" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45643" e_stop="45558"/>
          <exon e_start="45477" e_stop="45120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGATCCATGCTAGTAATTGGTTCAGCAGCTGGAGTAGCATTTATGGGAATGGAAAAAGTCGACTTCTTTTGGTATATGAGAAAGGTACATATGCTGCTGCCTGCTATTTTGATGCACCACTTTGAACATTTCTGCTTCAATATTTGTCACTCTTATCTCTGCAGGTTAGTGGTTTTGCTTTTGCTGGTTATGCTGCCGGTATTGCTTCGTATCTTGCAGTACATAATCTCGATATCTCACTCCCAACAGCTCTGGCTCAAATTCCTTTCCTTCATGGATCTTGATGTCCTTGGAGCTATCAGTAAATCTGATCGGTTGTGTATTCTCTGCTTCAAGTTAATGACCAGAACATATGAACACAAATCCAGAACCTTTAGTGGTGGAGATGAAAATGCCATATATCAATCTCTTTAGAACTACCAGTGTGTTGGCCTGGGTTGGGGATTAAAGCCCCACATAATGTAATTTATTGATTCTAATAGTTTAATAATGTAACTGTGGAGTAATACCTCCATCTTCAGA</genome_strand>
        <mrna_strand>GTGGATCCATGCTAGTAATTGGTTCAGCAGCTGGAGTAGCATTTATGGGAATGGAAAAAGTCGACTTCTTTTGGTATATGAGAAAG................................................................................GTTAGTGGTTTTGCTTTTGCTGGTTATGCTGCCGGTATTGCTTCGTATCTTGCAGTACATAATCTCGATATCTCACTCCCAACAGCTCTGGCTCAAATTCCTTTCCTTCATGGATCTTGATGTCCTTGGAGCTATCAGTAAATCTGATCGGTTGTGTATTCTCTGCTTCAAGTTAATGACCAGAACATATGAACACAAATCCAGAACCTTTAGTGGTGGAGATGAAAATGCCATATATCAATCTCTTTAGAACTACCAGTGTGTTGGCCTGGGTTGGGGATTAAAGCCCCACATAATGTAATTTATTGATTCTAATAGTTTAATAATGTAACTGTGGAGTAATACCTCCATCTTCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E252319" ref_strand="+" ref_description="SGN-E252319 [cLEG-12-F16]">
      <seq>ttttgtgactttcttcctcagttcaatccttgacaatctgacttctacaattgtgatggtctccttactgaggaaactggcaccaccttcagaataccgaaagcttcttggcgctgttgttgttatagcagcaaatgccggtggagcatggactcccataggtgatgttacaactacaatgctctggatacacggccaagtatccacgttaccaacgatgaaggatttatttctaccgtcagttgtttctctagctgttcctttggctctgctgtcccttacaagtgaagtgaatgggaaaggacaaaactccgctgaggttctggcatccgaacagatggctcctcgaggacagctagttttcgcggttggacttggggctttagtgtttgtaccagttttcaaggccttgactggccttccaccgtacatgggtatgctgcttggactgggagttctttggataatcacagatgcgatccactatggagaatctgaaagacagcggctgaaagtaccacaggctttatcacgcattgacactcaaggagctcttttcttccttggaatcctattgtccgttagcagcctggaagcagcaggtattctgcgagaattggcaaattaccttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="50360" stop="45506"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50060" g_stop="49959" g_length="102"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="102" r_length="102" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49958" i_stop="48887" i_length="1072">
            <donor d_prob="0.781" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48886" g_stop="48766" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="103" r_stop="223" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48765" i_stop="46714" i_length="2052">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46713" g_stop="46652" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="224" r_stop="285" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46651" i_stop="46553" i_length="99">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46552" g_stop="46250" g_length="303"/>
          <reference_exon_boundary r_type="cDNA" r_start="286" r_stop="588" r_length="303" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46249" i_stop="45853" i_length="397">
            <donor d_prob="0.920" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="45852" g_stop="45806" g_length="47"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="635" r_length="47" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-E252319" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>635</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252319" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50060" e_stop="49959"/>
          <exon e_start="48886" e_stop="48766"/>
          <exon e_start="46713" e_stop="46652"/>
          <exon e_start="46552" e_stop="46250"/>
          <exon e_start="45852" e_stop="45806"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTGTGACTTTCTTCCTCAGTTCAATCCTTGACAATCTGACTTCTACAATTGTGATGGTCTCCTTACTGAGGAAACTGGCACCACCTTCAGAATACCGAAAGTAAGTGTCAGCAGCTTTGAGCCTCATCTGTTGAACCTTCTAGTAGGAGCAAAGATATTATGATTTACTCTCATATTTGGTCTAAAGTTATTTGATCTCGGAATATCAATCTTGATTTCCATAAGTCTCAAGAGGTATTGATATTCGAACTCGAGAGAAGATCAGAAAGAACAAGGGATGTACATGTGTAAGCAAGTTAGATGTCTATACATTATCAAAAAAAAGAAGTTAGATGTCTATAAGAGAAATGACAAGCCCAGATGCTTTCAGGATGCAACTTTGGAGTAGCTCAAGGTTCTTGTATTACAATTGTGGGAATTTTTTAAAATGAGAGTCACTTGAGTTAAATTTTTGATTTAATAAGGCAGTGAATGGTCGTATGGTGATGCGATGTTTAAATGCATTAAGTAACTTCACCCTAGCTATATCAATAAGTATCTTCTAGAACTTTACGCTTATCTTTTAGCAAATAATCATGGTTGTGTTTCTGTGCAAGTATAGACTAGACTCTCTTGTATCTCAGACTACATTATTCATTTTGAGTTATTTTCCAGAATTCTGAACCTTTTCTAGCTTTTGTTTGTTCAGCCTTAACAGGTGGATCTGGTTTTCAAATTAACAATCTTCAAAGTTTGCAGATTGTGGATATCCCTGCCCCTTGTACTGTAAAACTTAATATCTAGGGATAGGCCTGAGAAACTTTTCCTGAGATAAATATTGACAATTTCTAATTACTTTGAGCACCCGAGTGTGTGGCCTAGTGGTCAGTGAAGTGGTTGAGAGCCATGAGGTCTCAGGTTCAAATCTCAGCTAGAGACAAAAATTCTAGGTGATTCTTCCAACTGACCTAGCCTTGGTGAATGTAGTTCCTGGAACCTGTTGCTGGTGGGAGGGGGCACGTATCCCGTGGAATAAGTCGCGGGTGAAAGCTGGCCCAGACACCATGGTCATCAAAAACAATAAATTACTTTATCTTTCTCCTAGACTACCTGTTTCTTGCTCGGTATCCTTTTTCTGAAGGCTCTGTTGTATTTATTGTGAAGTATATAATCTGTTAATTATTTGTTCCCAGGCTTCTTGGCGCTGTTGTTGTTATAGCAGCAAATGCCGGTGGAGCATGGACTCCCATAGGTGATGTTACAACTACAATGCTCTGGATACACGGCCAAGTATCCACGTTACCAACGATGAAGGTTTTTGAATTTTTTTATCTCATTGCTTCTATTTATTTACTAGTTTCTGAGTACGTGCGTTGCACATGTGACCCATGCAAGTTTTTATAGATCCATTACAACGATTAAGTATATATGATTAGTAATAAAACAACAATTACAAAAAAAAAAAAATTAAAAAGGGTGACAAAAACAACATTTACAAACTTTGAACTTTGTTTAGTAGTTAGCAAATTTTCAATTATGTCACAAATGGCTAACAGAGCCCCAAAAAAGTACAGACTTACGAAAATAAAAAATTCAAGAAAATTAAATTAAAGAAGTCTAATATATATAGAGAAAACACAGAAAATGAATAGAGAAGGAAAAATATACAACATACACATCCTTTCTTAAACTTTAATCATAACAATATAGAGGTAAAACAATATACAAAATCCATACATATTTTTTTGAAATTTTTGCTGGTGACTTTCATAACCAATCAAAATTGTAGAGTCTTCTTCATTGAGTTAGAATGAATCAAATATTACAAAATTAAATATAAGTGCTTCACTAGTTTGATAATATAATGACAAAGGATAATTTTGTTGGGGGTCTCATAAAACAAAAAAAATATGAGTTTATATAGATAAAAGTGCAGAAAATCCAAAAGATATTATTAAGTTTCAAATTAAACATTTGGAGGTTATGATTATTAAAAGCATGTAATATCAAGATATTAATTGATAGGTAATTATATATAATTCATGAATGTGAATATTTAAAGTAAATAAATAATCATAATAAATAAATGAAGAAAGAAAAAGTTTGGTGAAAATGATATTTGTTGTTTCAATTTGAGAACTTATACAATCTGAAATGAATAATAATAACATAAACCAATTGGGGAAGAACAAAAAAAAATCTTTAATCTCAATAAATATATGCATATCTATACGAAATTTCGTGGTAGAGCAAGAGATGGTTGAATCCAAACGGTTGGTATTAACTCCTCCTTTGGGCTCTTCATTGTATATTTATAAGTTATTATAACGCTTCATTATTTTTTCATTTATTAGCACAGTAATTAATAAAAAGATAATTATGTGCAATTTAAATGTGATTTAACAAAATTTTTTAAATTATTATGTCACTTCCCTTTTTCACTTTTTTTTAGCTATTGCCCCCCTATTCAACTACTTAGTTGCTCACAATGAAAAAAAGAAACATTGTATGGCTTGACTACAAGAAGTTGAGTTTTGTCAAACTGAAGATATTAGCGGTTTTTGGGATTATTTGATGGAACAGTTATCTAATTTAAGTCATTAAGTAGTAGAAAATGATAAGTTGTAACATCTAACCATTGTAATTATTGATTTTAACTTTAAAAGATTTTAATAAAAAAAATAAGTGAAGGGCATTTTCGTAATTCAACTTTGAACTTAAAATCTTCCCACTTATAATAATATATGATATATGTACATCTTTCCTTGTGTTATAATGAAGGAAACAATCTTTAGGGACGAAGGGAGAGAATTATTATCAAATAAGCACTGGATGGTTGTCATTTCGTATAGCTTCCAATATTCGAAGATGATTAGTCTAAATGCAATGATATTCATAGCATTGTTGATGTCATTTTGATTGTACACGCTGCCTGAAAACATGTTTGCATTGGCTTAGATGCATTCTGTAACCGAATATTATATTGAGGAATTCACATTTAAGTTTGAATGAATATATATTTGAGACTATGGATGAAGGTAGTGCTGAAATGAATGAAAGAACCATACAGCTCAGTCTGTATTCTCTCAAACTGCACTTATTATGGAATAAAGTATGGATGATGGAAAAGAAATATGTAACTTTTCTGTGGAGGATGGTTATTTCAGTGCTGCCACTGGTTCTATCCACCGTGCATATTCATTTAAAAAAGCATTTTTCACTTGGTTATATTTGGTAAATTAGAACCTGCCAGATCATGTCTAAACCTGTATAATAGTCTTCACTTAAGAACTCTTTACTTCAGTTGCCAACTGAAGTCTCTATTTCAGTTCTGGTAACAGTGCAATGCACTTTATCTTTTCGCAGGATTTATTTCTACCGTCAGTTGTTTCTCTAGCTGTTCCTTTGGCTCTGCTGTCCCTTACAAGGTATATTTCTAGCATAGACCTGAAGAGCTTCTTGAATTTCGGAAATATTTTAAGAAATAGAGTGGAGATGAAACTATATTAGAAATTATTTGTGTTCAGTGAAGTGAATGGGAAAGGACAAAACTCCGCTGAGGTTCTGGCATCCGAACAGATGGCTCCTCGAGGACAGCTAGTTTTCGCGGTTGGACTTGGGGCTTTAGTGTTTGTACCAGTTTTCAAGGCCTTGACTGGCCTTCCACCGTACATGGGTATGCTGCTTGGACTGGGAGTTCTTTGGATAATCACAGATGCGATCCACTATGGAGAATCTGAAAGACAGCGGCTGAAAGTACCACAGGCTTTATCACGCATTGACACTCAAGGAGCTCTTTTCTTCCTTGGAATCCTATTGTCCGTTAGCAGGTATTGCAGAATCCTTTGGGTTTTATAATACTTACAGCAGCATGGCAATCAAAAAGTTCATGCAGAACTCTTTTCTTGATAGAATAGATTCATACATCATAACCCTAAAATCATTTTAAACCAGATGTTGAGAATTAACCCTGTTCAAAAATTTGCCATCCAGATCATTTGGCATTATATCATTTCTTAGTCTTGATTAACAGTGTAACCACTATAAGTGAAATCATTGGGGGAAATGGGAAGTGGTTCTTATTTTACTTCTGCGGGTATGATGGGTGTAGGATCCATTACTCTATTTAGCTCATGCATTGTGTGACTATCAACCATCATCCATGCACATCTGAATTAGATAAATAACATGACTAGTCATTCTGGCATATTAACATCTTTTCCATAGCCTGGAAGCAGCAGGTATTCTGCGAGAATTGGCAAATTACCTTGATG</genome_strand>
        <mrna_strand>TTTTGTGACTTTCTTCCTCAGTTCAATCCTTGACAATCTGACTTCTACAATTGTGATGGTCTCCTTACTGAGGAAACTGGCACCACCTTCAGAATACCGAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTTGGCGCTGTTGTTGTTATAGCAGCAAATGCCGGTGGAGCATGGACTCCCATAGGTGATGTTACAACTACAATGCTCTGGATACACGGCCAAGTATCCACGTTACCAACGATGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTATTTCTACCGTCAGTTGTTTCTCTAGCTGTTCCTTTGGCTCTGCTGTCCCTTACAAG...................................................................................................TGAAGTGAATGGGAAAGGACAAAACTCCGCTGAGGTTCTGGCATCCGAACAGATGGCTCCTCGAGGACAGCTAGTTTTCGCGGTTGGACTTGGGGCTTTAGTGTTTGTACCAGTTTTCAAGGCCTTGACTGGCCTTCCACCGTACATGGGTATGCTGCTTGGACTGGGAGTTCTTTGGATAATCACAGATGCGATCCACTATGGAGAATCTGAAAGACAGCGGCTGAAAGTACCACAGGCTTTATCACGCATTGACACTCAAGGAGCTCTTTTCTTCCTTGGAATCCTATTGTCCGTTAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................CCTGGAAGCAGCAGGTATTCTGCGAGAATTGGCAAATTACCTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E443852" ref_strand="+" ref_description="SGN-E443852 [cSTA-40-E4]">
      <seq>cgggctgcaggaattcggcacgaggtgaagagcttcttgaatttcggaaatagttacaagaaattagagtggggatgaaactatattagaaattatttgtgttcagtgaagtgaatgggaaaggacaaaattccgctgaggttctggcatccgaacagatggctcctcgaggacagctagtttttgcagtaggacttggggctttagtgtttgtaccagttttcaaggccttgactggtctaccaccgtacatgggtatgctgcttggactgggagttctttggataatcacagatgcgattcactatggagaatctgaaagacagcggctgaaagtaccacaggctttatcacgcattgacactcaaggagctcttttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="46935" stop="45979"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="46632" g_stop="46279" g_length="354"/>
          <reference_exon_boundary r_type="cDNA" r_start="25" r_stop="380" r_length="356" r_score="0.958"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-E443852" ref_strand="+">
        <total_alignment_score>0.958</total_alignment_score>
        <cumulative_length_of_scored_exons>354</cumulative_length_of_scored_exons>
        <coverage percentage="0.932" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E443852" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="46632" e_stop="46279"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTGAAGAGCTTCTTGAATTTCGGAAATA-TTTTAAGAAA-TAGAGTGGAGATGAAACTATATTAGAAATTATTTGTGTTCAGTGAAGTGAATGGGAAAGGACAAAACTCCGCTGAGGTTCTGGCATCCGAACAGATGGCTCCTCGAGGACAGCTAGTTTTCGCGGTTGGACTTGGGGCTTTAGTGTTTGTACCAGTTTTCAAGGCCTTGACTGGCCTTCCACCGTACATGGGTATGCTGCTTGGACTGGGAGTTCTTTGGATAATCACAGATGCGATCCACTATGGAGAATCTGAAAGACAGCGGCTGAAAGTACCACAGGCTTTATCACGCATTGACACTCAAGGAGCTCTTTTC</genome_strand>
        <mrna_strand>GTGAAGAGCTTCTTGAATTTCGGAAATAGTTACAAGAAATTAGAGTGGGGATGAAACTATATTAGAAATTATTTGTGTTCAGTGAAGTGAATGGGAAAGGACAAAATTCCGCTGAGGTTCTGGCATCCGAACAGATGGCTCCTCGAGGACAGCTAGTTTTTGCAGTAGGACTTGGGGCTTTAGTGTTTGTACCAGTTTTCAAGGCCTTGACTGGTCTACCACCGTACATGGGTATGCTGCTTGGACTGGGAGTTCTTTGGATAATCACAGATGCGATTCACTATGGAGAATCTGAAAGACAGCGGCTGAAAGTACCACAGGCTTTATCACGCATTGACACTCAAGGAGCTCTTTTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E551315" ref_strand="+" ref_description="SGN-E551315 [TUS-54-C17]">
      <seq>gttttgtgactttcttcctcagttcaatccttgacaatctgacttctacaattgtgatggtctccttactgaggaaactggcaccaccttcagaataccgaaagcttcttggcgctgttgttgttatagcagcaaatgccggtggagcatggactcccataggtgatgttacaactacaatgctctggatacacggccaagtatccacgttaccaacgatgaaggatttatttctaccgtcagttgtttctctagctgttcctttggctctgctgtcccttacaagtgaagtgaatgggaaaggacaaaactccgctgaggttctggcatccgaacagatggctcctcgaggacagctagttttcgcggttggacttggggctttagtgtttgtaccagttttcaaggccttgactggccttccaccgtacatgggtatgctgcttggactgggagttctttggataatcacagatgcgatccactatggagaatctgaaagacagcggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="50361" stop="46028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50061" g_stop="49959" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49958" i_stop="48887" i_length="1072">
            <donor d_prob="0.781" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48886" g_stop="48766" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="224" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48765" i_stop="46714" i_length="2052">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46713" g_stop="46652" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="286" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46651" i_stop="46553" i_length="99">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46552" g_stop="46328" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="511" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-E551315" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E551315" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50061" e_stop="49959"/>
          <exon e_start="48886" e_stop="48766"/>
          <exon e_start="46713" e_stop="46652"/>
          <exon e_start="46552" e_stop="46328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGTGACTTTCTTCCTCAGTTCAATCCTTGACAATCTGACTTCTACAATTGTGATGGTCTCCTTACTGAGGAAACTGGCACCACCTTCAGAATACCGAAAGTAAGTGTCAGCAGCTTTGAGCCTCATCTGTTGAACCTTCTAGTAGGAGCAAAGATATTATGATTTACTCTCATATTTGGTCTAAAGTTATTTGATCTCGGAATATCAATCTTGATTTCCATAAGTCTCAAGAGGTATTGATATTCGAACTCGAGAGAAGATCAGAAAGAACAAGGGATGTACATGTGTAAGCAAGTTAGATGTCTATACATTATCAAAAAAAAGAAGTTAGATGTCTATAAGAGAAATGACAAGCCCAGATGCTTTCAGGATGCAACTTTGGAGTAGCTCAAGGTTCTTGTATTACAATTGTGGGAATTTTTTAAAATGAGAGTCACTTGAGTTAAATTTTTGATTTAATAAGGCAGTGAATGGTCGTATGGTGATGCGATGTTTAAATGCATTAAGTAACTTCACCCTAGCTATATCAATAAGTATCTTCTAGAACTTTACGCTTATCTTTTAGCAAATAATCATGGTTGTGTTTCTGTGCAAGTATAGACTAGACTCTCTTGTATCTCAGACTACATTATTCATTTTGAGTTATTTTCCAGAATTCTGAACCTTTTCTAGCTTTTGTTTGTTCAGCCTTAACAGGTGGATCTGGTTTTCAAATTAACAATCTTCAAAGTTTGCAGATTGTGGATATCCCTGCCCCTTGTACTGTAAAACTTAATATCTAGGGATAGGCCTGAGAAACTTTTCCTGAGATAAATATTGACAATTTCTAATTACTTTGAGCACCCGAGTGTGTGGCCTAGTGGTCAGTGAAGTGGTTGAGAGCCATGAGGTCTCAGGTTCAAATCTCAGCTAGAGACAAAAATTCTAGGTGATTCTTCCAACTGACCTAGCCTTGGTGAATGTAGTTCCTGGAACCTGTTGCTGGTGGGAGGGGGCACGTATCCCGTGGAATAAGTCGCGGGTGAAAGCTGGCCCAGACACCATGGTCATCAAAAACAATAAATTACTTTATCTTTCTCCTAGACTACCTGTTTCTTGCTCGGTATCCTTTTTCTGAAGGCTCTGTTGTATTTATTGTGAAGTATATAATCTGTTAATTATTTGTTCCCAGGCTTCTTGGCGCTGTTGTTGTTATAGCAGCAAATGCCGGTGGAGCATGGACTCCCATAGGTGATGTTACAACTACAATGCTCTGGATACACGGCCAAGTATCCACGTTACCAACGATGAAGGTTTTTGAATTTTTTTATCTCATTGCTTCTATTTATTTACTAGTTTCTGAGTACGTGCGTTGCACATGTGACCCATGCAAGTTTTTATAGATCCATTACAACGATTAAGTATATATGATTAGTAATAAAACAACAATTACAAAAAAAAAAAAATTAAAAAGGGTGACAAAAACAACATTTACAAACTTTGAACTTTGTTTAGTAGTTAGCAAATTTTCAATTATGTCACAAATGGCTAACAGAGCCCCAAAAAAGTACAGACTTACGAAAATAAAAAATTCAAGAAAATTAAATTAAAGAAGTCTAATATATATAGAGAAAACACAGAAAATGAATAGAGAAGGAAAAATATACAACATACACATCCTTTCTTAAACTTTAATCATAACAATATAGAGGTAAAACAATATACAAAATCCATACATATTTTTTTGAAATTTTTGCTGGTGACTTTCATAACCAATCAAAATTGTAGAGTCTTCTTCATTGAGTTAGAATGAATCAAATATTACAAAATTAAATATAAGTGCTTCACTAGTTTGATAATATAATGACAAAGGATAATTTTGTTGGGGGTCTCATAAAACAAAAAAAATATGAGTTTATATAGATAAAAGTGCAGAAAATCCAAAAGATATTATTAAGTTTCAAATTAAACATTTGGAGGTTATGATTATTAAAAGCATGTAATATCAAGATATTAATTGATAGGTAATTATATATAATTCATGAATGTGAATATTTAAAGTAAATAAATAATCATAATAAATAAATGAAGAAAGAAAAAGTTTGGTGAAAATGATATTTGTTGTTTCAATTTGAGAACTTATACAATCTGAAATGAATAATAATAACATAAACCAATTGGGGAAGAACAAAAAAAAATCTTTAATCTCAATAAATATATGCATATCTATACGAAATTTCGTGGTAGAGCAAGAGATGGTTGAATCCAAACGGTTGGTATTAACTCCTCCTTTGGGCTCTTCATTGTATATTTATAAGTTATTATAACGCTTCATTATTTTTTCATTTATTAGCACAGTAATTAATAAAAAGATAATTATGTGCAATTTAAATGTGATTTAACAAAATTTTTTAAATTATTATGTCACTTCCCTTTTTCACTTTTTTTTAGCTATTGCCCCCCTATTCAACTACTTAGTTGCTCACAATGAAAAAAAGAAACATTGTATGGCTTGACTACAAGAAGTTGAGTTTTGTCAAACTGAAGATATTAGCGGTTTTTGGGATTATTTGATGGAACAGTTATCTAATTTAAGTCATTAAGTAGTAGAAAATGATAAGTTGTAACATCTAACCATTGTAATTATTGATTTTAACTTTAAAAGATTTTAATAAAAAAAATAAGTGAAGGGCATTTTCGTAATTCAACTTTGAACTTAAAATCTTCCCACTTATAATAATATATGATATATGTACATCTTTCCTTGTGTTATAATGAAGGAAACAATCTTTAGGGACGAAGGGAGAGAATTATTATCAAATAAGCACTGGATGGTTGTCATTTCGTATAGCTTCCAATATTCGAAGATGATTAGTCTAAATGCAATGATATTCATAGCATTGTTGATGTCATTTTGATTGTACACGCTGCCTGAAAACATGTTTGCATTGGCTTAGATGCATTCTGTAACCGAATATTATATTGAGGAATTCACATTTAAGTTTGAATGAATATATATTTGAGACTATGGATGAAGGTAGTGCTGAAATGAATGAAAGAACCATACAGCTCAGTCTGTATTCTCTCAAACTGCACTTATTATGGAATAAAGTATGGATGATGGAAAAGAAATATGTAACTTTTCTGTGGAGGATGGTTATTTCAGTGCTGCCACTGGTTCTATCCACCGTGCATATTCATTTAAAAAAGCATTTTTCACTTGGTTATATTTGGTAAATTAGAACCTGCCAGATCATGTCTAAACCTGTATAATAGTCTTCACTTAAGAACTCTTTACTTCAGTTGCCAACTGAAGTCTCTATTTCAGTTCTGGTAACAGTGCAATGCACTTTATCTTTTCGCAGGATTTATTTCTACCGTCAGTTGTTTCTCTAGCTGTTCCTTTGGCTCTGCTGTCCCTTACAAGGTATATTTCTAGCATAGACCTGAAGAGCTTCTTGAATTTCGGAAATATTTTAAGAAATAGAGTGGAGATGAAACTATATTAGAAATTATTTGTGTTCAGTGAAGTGAATGGGAAAGGACAAAACTCCGCTGAGGTTCTGGCATCCGAACAGATGGCTCCTCGAGGACAGCTAGTTTTCGCGGTTGGACTTGGGGCTTTAGTGTTTGTACCAGTTTTCAAGGCCTTGACTGGCCTTCCACCGTACATGGGTATGCTGCTTGGACTGGGAGTTCTTTGGATAATCACAGATGCGATCCACTATGGAGAATCTGAAAGACAGCGGCT</genome_strand>
        <mrna_strand>GTTTTGTGACTTTCTTCCTCAGTTCAATCCTTGACAATCTGACTTCTACAATTGTGATGGTCTCCTTACTGAGGAAACTGGCACCACCTTCAGAATACCGAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTTGGCGCTGTTGTTGTTATAGCAGCAAATGCCGGTGGAGCATGGACTCCCATAGGTGATGTTACAACTACAATGCTCTGGATACACGGCCAAGTATCCACGTTACCAACGATGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTATTTCTACCGTCAGTTGTTTCTCTAGCTGTTCCTTTGGCTCTGCTGTCCCTTACAAG...................................................................................................TGAAGTGAATGGGAAAGGACAAAACTCCGCTGAGGTTCTGGCATCCGAACAGATGGCTCCTCGAGGACAGCTAGTTTTCGCGGTTGGACTTGGGGCTTTAGTGTTTGTACCAGTTTTCAAGGCCTTGACTGGCCTTCCACCGTACATGGGTATGCTGCTTGGACTGGGAGTTCTTTGGATAATCACAGATGCGATCCACTATGGAGAATCTGAAAGACAGCGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E688608" ref_strand="+" ref_description="SGN-E688608 [t3_tus_54_C17]">
      <seq>gttttgtgactttcttcctcagttcaatccttgacaatctgacttctacaattgtgatggtctccttactgaggaaactggcaccaccttcagaataccgaaagcttcttggcgctgttgttgttatagcagcaaatgccggtggagcatggactcccataggtgatgttacaactacaatgctctggatacacggccaagtatccacgttaccaacgatgaaggatttatttctaccgtcagttgtttctctagctgttcctttggctctgctgtcccttacaagtgaagtgaatgggaaaggacaaaactccgctgaggttctggcatccgaacagatggctcctcgaggacagctagttttcgcggttggacttggggctttagtgtttgtaccagttttcaaggccttgactggccttccaccgtacatgggtatgctgcttggactgggagttctttggataatcacagatgcgatccactatggagaatctgaaagacagcggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="50361" stop="46028"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="50061" g_stop="49959" g_length="103"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="103" r_length="103" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="49958" i_stop="48887" i_length="1072">
            <donor d_prob="0.781" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="48886" g_stop="48766" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="104" r_stop="224" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="48765" i_stop="46714" i_length="2052">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="46713" g_stop="46652" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="225" r_stop="286" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="46651" i_stop="46553" i_length="99">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46552" g_stop="46328" g_length="225"/>
          <reference_exon_boundary r_type="cDNA" r_start="287" r_stop="511" r_length="225" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-E688608" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>511</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E688608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="50061" e_stop="49959"/>
          <exon e_start="48886" e_stop="48766"/>
          <exon e_start="46713" e_stop="46652"/>
          <exon e_start="46552" e_stop="46328"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTTGTGACTTTCTTCCTCAGTTCAATCCTTGACAATCTGACTTCTACAATTGTGATGGTCTCCTTACTGAGGAAACTGGCACCACCTTCAGAATACCGAAAGTAAGTGTCAGCAGCTTTGAGCCTCATCTGTTGAACCTTCTAGTAGGAGCAAAGATATTATGATTTACTCTCATATTTGGTCTAAAGTTATTTGATCTCGGAATATCAATCTTGATTTCCATAAGTCTCAAGAGGTATTGATATTCGAACTCGAGAGAAGATCAGAAAGAACAAGGGATGTACATGTGTAAGCAAGTTAGATGTCTATACATTATCAAAAAAAAGAAGTTAGATGTCTATAAGAGAAATGACAAGCCCAGATGCTTTCAGGATGCAACTTTGGAGTAGCTCAAGGTTCTTGTATTACAATTGTGGGAATTTTTTAAAATGAGAGTCACTTGAGTTAAATTTTTGATTTAATAAGGCAGTGAATGGTCGTATGGTGATGCGATGTTTAAATGCATTAAGTAACTTCACCCTAGCTATATCAATAAGTATCTTCTAGAACTTTACGCTTATCTTTTAGCAAATAATCATGGTTGTGTTTCTGTGCAAGTATAGACTAGACTCTCTTGTATCTCAGACTACATTATTCATTTTGAGTTATTTTCCAGAATTCTGAACCTTTTCTAGCTTTTGTTTGTTCAGCCTTAACAGGTGGATCTGGTTTTCAAATTAACAATCTTCAAAGTTTGCAGATTGTGGATATCCCTGCCCCTTGTACTGTAAAACTTAATATCTAGGGATAGGCCTGAGAAACTTTTCCTGAGATAAATATTGACAATTTCTAATTACTTTGAGCACCCGAGTGTGTGGCCTAGTGGTCAGTGAAGTGGTTGAGAGCCATGAGGTCTCAGGTTCAAATCTCAGCTAGAGACAAAAATTCTAGGTGATTCTTCCAACTGACCTAGCCTTGGTGAATGTAGTTCCTGGAACCTGTTGCTGGTGGGAGGGGGCACGTATCCCGTGGAATAAGTCGCGGGTGAAAGCTGGCCCAGACACCATGGTCATCAAAAACAATAAATTACTTTATCTTTCTCCTAGACTACCTGTTTCTTGCTCGGTATCCTTTTTCTGAAGGCTCTGTTGTATTTATTGTGAAGTATATAATCTGTTAATTATTTGTTCCCAGGCTTCTTGGCGCTGTTGTTGTTATAGCAGCAAATGCCGGTGGAGCATGGACTCCCATAGGTGATGTTACAACTACAATGCTCTGGATACACGGCCAAGTATCCACGTTACCAACGATGAAGGTTTTTGAATTTTTTTATCTCATTGCTTCTATTTATTTACTAGTTTCTGAGTACGTGCGTTGCACATGTGACCCATGCAAGTTTTTATAGATCCATTACAACGATTAAGTATATATGATTAGTAATAAAACAACAATTACAAAAAAAAAAAAATTAAAAAGGGTGACAAAAACAACATTTACAAACTTTGAACTTTGTTTAGTAGTTAGCAAATTTTCAATTATGTCACAAATGGCTAACAGAGCCCCAAAAAAGTACAGACTTACGAAAATAAAAAATTCAAGAAAATTAAATTAAAGAAGTCTAATATATATAGAGAAAACACAGAAAATGAATAGAGAAGGAAAAATATACAACATACACATCCTTTCTTAAACTTTAATCATAACAATATAGAGGTAAAACAATATACAAAATCCATACATATTTTTTTGAAATTTTTGCTGGTGACTTTCATAACCAATCAAAATTGTAGAGTCTTCTTCATTGAGTTAGAATGAATCAAATATTACAAAATTAAATATAAGTGCTTCACTAGTTTGATAATATAATGACAAAGGATAATTTTGTTGGGGGTCTCATAAAACAAAAAAAATATGAGTTTATATAGATAAAAGTGCAGAAAATCCAAAAGATATTATTAAGTTTCAAATTAAACATTTGGAGGTTATGATTATTAAAAGCATGTAATATCAAGATATTAATTGATAGGTAATTATATATAATTCATGAATGTGAATATTTAAAGTAAATAAATAATCATAATAAATAAATGAAGAAAGAAAAAGTTTGGTGAAAATGATATTTGTTGTTTCAATTTGAGAACTTATACAATCTGAAATGAATAATAATAACATAAACCAATTGGGGAAGAACAAAAAAAAATCTTTAATCTCAATAAATATATGCATATCTATACGAAATTTCGTGGTAGAGCAAGAGATGGTTGAATCCAAACGGTTGGTATTAACTCCTCCTTTGGGCTCTTCATTGTATATTTATAAGTTATTATAACGCTTCATTATTTTTTCATTTATTAGCACAGTAATTAATAAAAAGATAATTATGTGCAATTTAAATGTGATTTAACAAAATTTTTTAAATTATTATGTCACTTCCCTTTTTCACTTTTTTTTAGCTATTGCCCCCCTATTCAACTACTTAGTTGCTCACAATGAAAAAAAGAAACATTGTATGGCTTGACTACAAGAAGTTGAGTTTTGTCAAACTGAAGATATTAGCGGTTTTTGGGATTATTTGATGGAACAGTTATCTAATTTAAGTCATTAAGTAGTAGAAAATGATAAGTTGTAACATCTAACCATTGTAATTATTGATTTTAACTTTAAAAGATTTTAATAAAAAAAATAAGTGAAGGGCATTTTCGTAATTCAACTTTGAACTTAAAATCTTCCCACTTATAATAATATATGATATATGTACATCTTTCCTTGTGTTATAATGAAGGAAACAATCTTTAGGGACGAAGGGAGAGAATTATTATCAAATAAGCACTGGATGGTTGTCATTTCGTATAGCTTCCAATATTCGAAGATGATTAGTCTAAATGCAATGATATTCATAGCATTGTTGATGTCATTTTGATTGTACACGCTGCCTGAAAACATGTTTGCATTGGCTTAGATGCATTCTGTAACCGAATATTATATTGAGGAATTCACATTTAAGTTTGAATGAATATATATTTGAGACTATGGATGAAGGTAGTGCTGAAATGAATGAAAGAACCATACAGCTCAGTCTGTATTCTCTCAAACTGCACTTATTATGGAATAAAGTATGGATGATGGAAAAGAAATATGTAACTTTTCTGTGGAGGATGGTTATTTCAGTGCTGCCACTGGTTCTATCCACCGTGCATATTCATTTAAAAAAGCATTTTTCACTTGGTTATATTTGGTAAATTAGAACCTGCCAGATCATGTCTAAACCTGTATAATAGTCTTCACTTAAGAACTCTTTACTTCAGTTGCCAACTGAAGTCTCTATTTCAGTTCTGGTAACAGTGCAATGCACTTTATCTTTTCGCAGGATTTATTTCTACCGTCAGTTGTTTCTCTAGCTGTTCCTTTGGCTCTGCTGTCCCTTACAAGGTATATTTCTAGCATAGACCTGAAGAGCTTCTTGAATTTCGGAAATATTTTAAGAAATAGAGTGGAGATGAAACTATATTAGAAATTATTTGTGTTCAGTGAAGTGAATGGGAAAGGACAAAACTCCGCTGAGGTTCTGGCATCCGAACAGATGGCTCCTCGAGGACAGCTAGTTTTCGCGGTTGGACTTGGGGCTTTAGTGTTTGTACCAGTTTTCAAGGCCTTGACTGGCCTTCCACCGTACATGGGTATGCTGCTTGGACTGGGAGTTCTTTGGATAATCACAGATGCGATCCACTATGGAGAATCTGAAAGACAGCGGCT</genome_strand>
        <mrna_strand>GTTTTGTGACTTTCTTCCTCAGTTCAATCCTTGACAATCTGACTTCTACAATTGTGATGGTCTCCTTACTGAGGAAACTGGCACCACCTTCAGAATACCGAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTTGGCGCTGTTGTTGTTATAGCAGCAAATGCCGGTGGAGCATGGACTCCCATAGGTGATGTTACAACTACAATGCTCTGGATACACGGCCAAGTATCCACGTTACCAACGATGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTATTTCTACCGTCAGTTGTTTCTCTAGCTGTTCCTTTGGCTCTGCTGTCCCTTACAAG...................................................................................................TGAAGTGAATGGGAAAGGACAAAACTCCGCTGAGGTTCTGGCATCCGAACAGATGGCTCCTCGAGGACAGCTAGTTTTCGCGGTTGGACTTGGGGCTTTAGTGTTTGTACCAGTTTTCAAGGCCTTGACTGGCCTTCCACCGTACATGGGTATGCTGCTTGGACTGGGAGTTCTTTGGATAATCACAGATGCGATCCACTATGGAGAATCTGAAAGACAGCGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283324" ref_strand="+" ref_description="SGN-E283324 [cLER-12-H22]">
      <seq>agctggttacagacaacatcactactcgcaagccaataactctgctttgggtggtaggttttgtgactttcttcctcagttcaatccttgacaatctgacttctacaattgtgatggtctccttactgaggaaactggcaccaccttcagaataccgaaagcttcttggcgctgttgttgttatagcagcaaatgccggtggagcatggactcccataggtgatgttacaactacaatgctctggatacacggccaagtatccacgttaccaacgatgaaggatttatttctaccgtcagttgtttctctagctgttcctttggctctgctgtcccttacaagtgaagtgaatgggaaaggacaaaactccgctgaggttctggcatccgaacagatggctcctcgaggacagctagttttcgcggttggacttggggctttagtgtttgtaccagttttcaaggccttgactggccttccaccgtacatgggtatgctgcttggactgggagttctttggataatcacagatgcgatccactatggagaatctgaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="51427" stop="46039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51127" g_stop="51075" g_length="53"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="53" r_length="53" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51074" i_stop="50066" i_length="1009">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50065" g_stop="49959" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="54" r_stop="160" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49958" i_stop="48887" i_length="1072">
            <donor d_prob="0.781" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48886" g_stop="48766" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="281" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48765" i_stop="46714" i_length="2052">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46713" g_stop="46652" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="282" r_stop="343" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46651" i_stop="46553" i_length="99">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46552" g_stop="46339" g_length="214"/>
          <reference_exon_boundary r_type="cDNA" r_start="344" r_stop="557" r_length="214" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-E283324" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>557</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E283324" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51127" e_stop="51075"/>
          <exon e_start="50065" e_stop="49959"/>
          <exon e_start="48886" e_stop="48766"/>
          <exon e_start="46713" e_stop="46652"/>
          <exon e_start="46552" e_stop="46339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGCTGGTTACAGACAACATCACTACTCGCAAGCCAATAACTCTGCTTTGGGTGGTTAGTGATTCAATAACCTTTCCTCTTTCAAATTACTCTCGGTTCTGTTTAGTTAAGCAGTTATTTATTTTTCTCTATGAATATAGACGATTCTGTAATATCTTGCTTTTGGTCTAACAAAAACAGATAGTGGTCTGATTTTGCATGAAATATGTTACTTGATTGAAAATGCATATATACAATTCAAAATAAGTAAATCTAAGAATGTCAGAGTAAGGAATAATACAAGTGGATAATAATGGAAGGACCAAGTTACCTACCGATTTAGCAATCTATTAAGCCCCATGTTTCGTTCCAGCATATTCAGTTGTTGTACTCTTTTATGAAATGCATGTTAGAATGCAAGGCATCCAAAGTTTTCTTCTGTTGGAAAAGTCATCTCTTAGGAATTGACAATTTGTCAAAGTAAGAACTGCTCATTTTTTTTCTTCAATGGAGAGATGCACAGTTCTGTCAGAGAGGGGTTGCTATTAATTGATGGCTCTTAATAGTCTTTGTTGTACGTATTTCACATATATTGGCTTCTAATGTCCTTTCAATCATAAAATTTCTTATGAAATACATGTTCTTGGGCCGGAATTGTCCATGCTAGGATATATAGAAATCTTAGATTCATTTATTTTAAGAATTGACAATTTCTCAAAGTAGCTGTATAATTTTTACTTGATATGCAGATGCATAGTTATATCAAAGCGGGTTTGCTTTTAGTTGATCATCCTTAGTAGTCTACGTAGTAACTATTTTGAATTTAATTTGATTTTGCTCCTAGATATTGTAGGATCTTATAATGCGCAGCAGATGGGGGTGGTATGATTACCTTCACTAGATGAAGGACATGACATACATAGATGATTTATACACAGAAGGTGGCTAGCCAATAATATGATTTACCACATTAGCCTTTCGTTCAAAAAAAAATGATTTAACTGAGTCAAGACTGATTCAACATTTTGTTTGCTGCTTGTTTCCTGTAATTGTCATTAACTTTCTAAAGTTATGGTAATTTCAGGTAGGTTTTGTGACTTTCTTCCTCAGTTCAATCCTTGACAATCTGACTTCTACAATTGTGATGGTCTCCTTACTGAGGAAACTGGCACCACCTTCAGAATACCGAAAGTAAGTGTCAGCAGCTTTGAGCCTCATCTGTTGAACCTTCTAGTAGGAGCAAAGATATTATGATTTACTCTCATATTTGGTCTAAAGTTATTTGATCTCGGAATATCAATCTTGATTTCCATAAGTCTCAAGAGGTATTGATATTCGAACTCGAGAGAAGATCAGAAAGAACAAGGGATGTACATGTGTAAGCAAGTTAGATGTCTATACATTATCAAAAAAAAGAAGTTAGATGTCTATAAGAGAAATGACAAGCCCAGATGCTTTCAGGATGCAACTTTGGAGTAGCTCAAGGTTCTTGTATTACAATTGTGGGAATTTTTTAAAATGAGAGTCACTTGAGTTAAATTTTTGATTTAATAAGGCAGTGAATGGTCGTATGGTGATGCGATGTTTAAATGCATTAAGTAACTTCACCCTAGCTATATCAATAAGTATCTTCTAGAACTTTACGCTTATCTTTTAGCAAATAATCATGGTTGTGTTTCTGTGCAAGTATAGACTAGACTCTCTTGTATCTCAGACTACATTATTCATTTTGAGTTATTTTCCAGAATTCTGAACCTTTTCTAGCTTTTGTTTGTTCAGCCTTAACAGGTGGATCTGGTTTTCAAATTAACAATCTTCAAAGTTTGCAGATTGTGGATATCCCTGCCCCTTGTACTGTAAAACTTAATATCTAGGGATAGGCCTGAGAAACTTTTCCTGAGATAAATATTGACAATTTCTAATTACTTTGAGCACCCGAGTGTGTGGCCTAGTGGTCAGTGAAGTGGTTGAGAGCCATGAGGTCTCAGGTTCAAATCTCAGCTAGAGACAAAAATTCTAGGTGATTCTTCCAACTGACCTAGCCTTGGTGAATGTAGTTCCTGGAACCTGTTGCTGGTGGGAGGGGGCACGTATCCCGTGGAATAAGTCGCGGGTGAAAGCTGGCCCAGACACCATGGTCATCAAAAACAATAAATTACTTTATCTTTCTCCTAGACTACCTGTTTCTTGCTCGGTATCCTTTTTCTGAAGGCTCTGTTGTATTTATTGTGAAGTATATAATCTGTTAATTATTTGTTCCCAGGCTTCTTGGCGCTGTTGTTGTTATAGCAGCAAATGCCGGTGGAGCATGGACTCCCATAGGTGATGTTACAACTACAATGCTCTGGATACACGGCCAAGTATCCACGTTACCAACGATGAAGGTTTTTGAATTTTTTTATCTCATTGCTTCTATTTATTTACTAGTTTCTGAGTACGTGCGTTGCACATGTGACCCATGCAAGTTTTTATAGATCCATTACAACGATTAAGTATATATGATTAGTAATAAAACAACAATTACAAAAAAAAAAAAATTAAAAAGGGTGACAAAAACAACATTTACAAACTTTGAACTTTGTTTAGTAGTTAGCAAATTTTCAATTATGTCACAAATGGCTAACAGAGCCCCAAAAAAGTACAGACTTACGAAAATAAAAAATTCAAGAAAATTAAATTAAAGAAGTCTAATATATATAGAGAAAACACAGAAAATGAATAGAGAAGGAAAAATATACAACATACACATCCTTTCTTAAACTTTAATCATAACAATATAGAGGTAAAACAATATACAAAATCCATACATATTTTTTTGAAATTTTTGCTGGTGACTTTCATAACCAATCAAAATTGTAGAGTCTTCTTCATTGAGTTAGAATGAATCAAATATTACAAAATTAAATATAAGTGCTTCACTAGTTTGATAATATAATGACAAAGGATAATTTTGTTGGGGGTCTCATAAAACAAAAAAAATATGAGTTTATATAGATAAAAGTGCAGAAAATCCAAAAGATATTATTAAGTTTCAAATTAAACATTTGGAGGTTATGATTATTAAAAGCATGTAATATCAAGATATTAATTGATAGGTAATTATATATAATTCATGAATGTGAATATTTAAAGTAAATAAATAATCATAATAAATAAATGAAGAAAGAAAAAGTTTGGTGAAAATGATATTTGTTGTTTCAATTTGAGAACTTATACAATCTGAAATGAATAATAATAACATAAACCAATTGGGGAAGAACAAAAAAAAATCTTTAATCTCAATAAATATATGCATATCTATACGAAATTTCGTGGTAGAGCAAGAGATGGTTGAATCCAAACGGTTGGTATTAACTCCTCCTTTGGGCTCTTCATTGTATATTTATAAGTTATTATAACGCTTCATTATTTTTTCATTTATTAGCACAGTAATTAATAAAAAGATAATTATGTGCAATTTAAATGTGATTTAACAAAATTTTTTAAATTATTATGTCACTTCCCTTTTTCACTTTTTTTTAGCTATTGCCCCCCTATTCAACTACTTAGTTGCTCACAATGAAAAAAAGAAACATTGTATGGCTTGACTACAAGAAGTTGAGTTTTGTCAAACTGAAGATATTAGCGGTTTTTGGGATTATTTGATGGAACAGTTATCTAATTTAAGTCATTAAGTAGTAGAAAATGATAAGTTGTAACATCTAACCATTGTAATTATTGATTTTAACTTTAAAAGATTTTAATAAAAAAAATAAGTGAAGGGCATTTTCGTAATTCAACTTTGAACTTAAAATCTTCCCACTTATAATAATATATGATATATGTACATCTTTCCTTGTGTTATAATGAAGGAAACAATCTTTAGGGACGAAGGGAGAGAATTATTATCAAATAAGCACTGGATGGTTGTCATTTCGTATAGCTTCCAATATTCGAAGATGATTAGTCTAAATGCAATGATATTCATAGCATTGTTGATGTCATTTTGATTGTACACGCTGCCTGAAAACATGTTTGCATTGGCTTAGATGCATTCTGTAACCGAATATTATATTGAGGAATTCACATTTAAGTTTGAATGAATATATATTTGAGACTATGGATGAAGGTAGTGCTGAAATGAATGAAAGAACCATACAGCTCAGTCTGTATTCTCTCAAACTGCACTTATTATGGAATAAAGTATGGATGATGGAAAAGAAATATGTAACTTTTCTGTGGAGGATGGTTATTTCAGTGCTGCCACTGGTTCTATCCACCGTGCATATTCATTTAAAAAAGCATTTTTCACTTGGTTATATTTGGTAAATTAGAACCTGCCAGATCATGTCTAAACCTGTATAATAGTCTTCACTTAAGAACTCTTTACTTCAGTTGCCAACTGAAGTCTCTATTTCAGTTCTGGTAACAGTGCAATGCACTTTATCTTTTCGCAGGATTTATTTCTACCGTCAGTTGTTTCTCTAGCTGTTCCTTTGGCTCTGCTGTCCCTTACAAGGTATATTTCTAGCATAGACCTGAAGAGCTTCTTGAATTTCGGAAATATTTTAAGAAATAGAGTGGAGATGAAACTATATTAGAAATTATTTGTGTTCAGTGAAGTGAATGGGAAAGGACAAAACTCCGCTGAGGTTCTGGCATCCGAACAGATGGCTCCTCGAGGACAGCTAGTTTTCGCGGTTGGACTTGGGGCTTTAGTGTTTGTACCAGTTTTCAAGGCCTTGACTGGCCTTCCACCGTACATGGGTATGCTGCTTGGACTGGGAGTTCTTTGGATAATCACAGATGCGATCCACTATGGAGAATCTGAA</genome_strand>
        <mrna_strand>AGCTGGTTACAGACAACATCACTACTCGCAAGCCAATAACTCTGCTTTGGGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGTTTTGTGACTTTCTTCCTCAGTTCAATCCTTGACAATCTGACTTCTACAATTGTGATGGTCTCCTTACTGAGGAAACTGGCACCACCTTCAGAATACCGAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTTGGCGCTGTTGTTGTTATAGCAGCAAATGCCGGTGGAGCATGGACTCCCATAGGTGATGTTACAACTACAATGCTCTGGATACACGGCCAAGTATCCACGTTACCAACGATGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTATTTCTACCGTCAGTTGTTTCTCTAGCTGTTCCTTTGGCTCTGCTGTCCCTTACAAG...................................................................................................TGAAGTGAATGGGAAAGGACAAAACTCCGCTGAGGTTCTGGCATCCGAACAGATGGCTCCTCGAGGACAGCTAGTTTTCGCGGTTGGACTTGGGGCTTTAGTGTTTGTACCAGTTTTCAAGGCCTTGACTGGCCTTCCACCGTACATGGGTATGCTGCTTGGACTGGGAGTTCTTTGGATAATCACAGATGCGATCCACTATGGAGAATCTGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E223744" ref_strand="+" ref_description="SGN-E223744 [cLEL-19-N18](-)">
      <seq>gctctttcccagttgtcacatgcgactgctgaagttagtgaaatagtgttctttttgcttggtgcgatgaccattgttgagatagttgatgctcatcagggatttaagctggttacagacaacatcactactcgcaagccaataactctgctttgggtggtaggttttgtgactttcttcctcagttcaatccttgacaatctgacttctacaattgtgatggtctccttactgaggaaactggcaccaccttcagaataccgaaagcttcttggcgctgttgttgttatagcagcaaatgccggtggagcatggactcccataggtgatgttacaactacaatgctctggatacacggccaagtatccacgttaccaacgatgaaggatttatttctaccgtcagttgtttctctagctgttcctttggctctgctgtcccttacaagtgaagtgaatgggaaaggacaaaactccgctgaggttctggcatacgaacagatggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="51533" stop="46195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51233" g_stop="51075" g_length="159"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="159" r_length="159" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51074" i_stop="50066" i_length="1009">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50065" g_stop="49959" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="160" r_stop="266" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49958" i_stop="48887" i_length="1072">
            <donor d_prob="0.781" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48886" g_stop="48766" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="267" r_stop="387" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48765" i_stop="46714" i_length="2052">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46713" g_stop="46652" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="388" r_stop="449" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46651" i_stop="46553" i_length="99">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46552" g_stop="46495" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="450" r_stop="507" r_length="58" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-E223744" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>507</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E223744" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51233" e_stop="51075"/>
          <exon e_start="50065" e_stop="49959"/>
          <exon e_start="48886" e_stop="48766"/>
          <exon e_start="46713" e_stop="46652"/>
          <exon e_start="46552" e_stop="46495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTCTTTCCCAGTTGTCACATGCGACTGCTGAAGTTAGTGAAATAGTGTTCTTTTTGCTTGGTGCGATGACCATTGTTGAGATAGTTGATGCTCATCAGGGATTTAAGCTGGTTACAGACAACATCACTACTCGCAAGCCAATAACTCTGCTTTGGGTGGTTAGTGATTCAATAACCTTTCCTCTTTCAAATTACTCTCGGTTCTGTTTAGTTAAGCAGTTATTTATTTTTCTCTATGAATATAGACGATTCTGTAATATCTTGCTTTTGGTCTAACAAAAACAGATAGTGGTCTGATTTTGCATGAAATATGTTACTTGATTGAAAATGCATATATACAATTCAAAATAAGTAAATCTAAGAATGTCAGAGTAAGGAATAATACAAGTGGATAATAATGGAAGGACCAAGTTACCTACCGATTTAGCAATCTATTAAGCCCCATGTTTCGTTCCAGCATATTCAGTTGTTGTACTCTTTTATGAAATGCATGTTAGAATGCAAGGCATCCAAAGTTTTCTTCTGTTGGAAAAGTCATCTCTTAGGAATTGACAATTTGTCAAAGTAAGAACTGCTCATTTTTTTTCTTCAATGGAGAGATGCACAGTTCTGTCAGAGAGGGGTTGCTATTAATTGATGGCTCTTAATAGTCTTTGTTGTACGTATTTCACATATATTGGCTTCTAATGTCCTTTCAATCATAAAATTTCTTATGAAATACATGTTCTTGGGCCGGAATTGTCCATGCTAGGATATATAGAAATCTTAGATTCATTTATTTTAAGAATTGACAATTTCTCAAAGTAGCTGTATAATTTTTACTTGATATGCAGATGCATAGTTATATCAAAGCGGGTTTGCTTTTAGTTGATCATCCTTAGTAGTCTACGTAGTAACTATTTTGAATTTAATTTGATTTTGCTCCTAGATATTGTAGGATCTTATAATGCGCAGCAGATGGGGGTGGTATGATTACCTTCACTAGATGAAGGACATGACATACATAGATGATTTATACACAGAAGGTGGCTAGCCAATAATATGATTTACCACATTAGCCTTTCGTTCAAAAAAAAATGATTTAACTGAGTCAAGACTGATTCAACATTTTGTTTGCTGCTTGTTTCCTGTAATTGTCATTAACTTTCTAAAGTTATGGTAATTTCAGGTAGGTTTTGTGACTTTCTTCCTCAGTTCAATCCTTGACAATCTGACTTCTACAATTGTGATGGTCTCCTTACTGAGGAAACTGGCACCACCTTCAGAATACCGAAAGTAAGTGTCAGCAGCTTTGAGCCTCATCTGTTGAACCTTCTAGTAGGAGCAAAGATATTATGATTTACTCTCATATTTGGTCTAAAGTTATTTGATCTCGGAATATCAATCTTGATTTCCATAAGTCTCAAGAGGTATTGATATTCGAACTCGAGAGAAGATCAGAAAGAACAAGGGATGTACATGTGTAAGCAAGTTAGATGTCTATACATTATCAAAAAAAAGAAGTTAGATGTCTATAAGAGAAATGACAAGCCCAGATGCTTTCAGGATGCAACTTTGGAGTAGCTCAAGGTTCTTGTATTACAATTGTGGGAATTTTTTAAAATGAGAGTCACTTGAGTTAAATTTTTGATTTAATAAGGCAGTGAATGGTCGTATGGTGATGCGATGTTTAAATGCATTAAGTAACTTCACCCTAGCTATATCAATAAGTATCTTCTAGAACTTTACGCTTATCTTTTAGCAAATAATCATGGTTGTGTTTCTGTGCAAGTATAGACTAGACTCTCTTGTATCTCAGACTACATTATTCATTTTGAGTTATTTTCCAGAATTCTGAACCTTTTCTAGCTTTTGTTTGTTCAGCCTTAACAGGTGGATCTGGTTTTCAAATTAACAATCTTCAAAGTTTGCAGATTGTGGATATCCCTGCCCCTTGTACTGTAAAACTTAATATCTAGGGATAGGCCTGAGAAACTTTTCCTGAGATAAATATTGACAATTTCTAATTACTTTGAGCACCCGAGTGTGTGGCCTAGTGGTCAGTGAAGTGGTTGAGAGCCATGAGGTCTCAGGTTCAAATCTCAGCTAGAGACAAAAATTCTAGGTGATTCTTCCAACTGACCTAGCCTTGGTGAATGTAGTTCCTGGAACCTGTTGCTGGTGGGAGGGGGCACGTATCCCGTGGAATAAGTCGCGGGTGAAAGCTGGCCCAGACACCATGGTCATCAAAAACAATAAATTACTTTATCTTTCTCCTAGACTACCTGTTTCTTGCTCGGTATCCTTTTTCTGAAGGCTCTGTTGTATTTATTGTGAAGTATATAATCTGTTAATTATTTGTTCCCAGGCTTCTTGGCGCTGTTGTTGTTATAGCAGCAAATGCCGGTGGAGCATGGACTCCCATAGGTGATGTTACAACTACAATGCTCTGGATACACGGCCAAGTATCCACGTTACCAACGATGAAGGTTTTTGAATTTTTTTATCTCATTGCTTCTATTTATTTACTAGTTTCTGAGTACGTGCGTTGCACATGTGACCCATGCAAGTTTTTATAGATCCATTACAACGATTAAGTATATATGATTAGTAATAAAACAACAATTACAAAAAAAAAAAAATTAAAAAGGGTGACAAAAACAACATTTACAAACTTTGAACTTTGTTTAGTAGTTAGCAAATTTTCAATTATGTCACAAATGGCTAACAGAGCCCCAAAAAAGTACAGACTTACGAAAATAAAAAATTCAAGAAAATTAAATTAAAGAAGTCTAATATATATAGAGAAAACACAGAAAATGAATAGAGAAGGAAAAATATACAACATACACATCCTTTCTTAAACTTTAATCATAACAATATAGAGGTAAAACAATATACAAAATCCATACATATTTTTTTGAAATTTTTGCTGGTGACTTTCATAACCAATCAAAATTGTAGAGTCTTCTTCATTGAGTTAGAATGAATCAAATATTACAAAATTAAATATAAGTGCTTCACTAGTTTGATAATATAATGACAAAGGATAATTTTGTTGGGGGTCTCATAAAACAAAAAAAATATGAGTTTATATAGATAAAAGTGCAGAAAATCCAAAAGATATTATTAAGTTTCAAATTAAACATTTGGAGGTTATGATTATTAAAAGCATGTAATATCAAGATATTAATTGATAGGTAATTATATATAATTCATGAATGTGAATATTTAAAGTAAATAAATAATCATAATAAATAAATGAAGAAAGAAAAAGTTTGGTGAAAATGATATTTGTTGTTTCAATTTGAGAACTTATACAATCTGAAATGAATAATAATAACATAAACCAATTGGGGAAGAACAAAAAAAAATCTTTAATCTCAATAAATATATGCATATCTATACGAAATTTCGTGGTAGAGCAAGAGATGGTTGAATCCAAACGGTTGGTATTAACTCCTCCTTTGGGCTCTTCATTGTATATTTATAAGTTATTATAACGCTTCATTATTTTTTCATTTATTAGCACAGTAATTAATAAAAAGATAATTATGTGCAATTTAAATGTGATTTAACAAAATTTTTTAAATTATTATGTCACTTCCCTTTTTCACTTTTTTTTAGCTATTGCCCCCCTATTCAACTACTTAGTTGCTCACAATGAAAAAAAGAAACATTGTATGGCTTGACTACAAGAAGTTGAGTTTTGTCAAACTGAAGATATTAGCGGTTTTTGGGATTATTTGATGGAACAGTTATCTAATTTAAGTCATTAAGTAGTAGAAAATGATAAGTTGTAACATCTAACCATTGTAATTATTGATTTTAACTTTAAAAGATTTTAATAAAAAAAATAAGTGAAGGGCATTTTCGTAATTCAACTTTGAACTTAAAATCTTCCCACTTATAATAATATATGATATATGTACATCTTTCCTTGTGTTATAATGAAGGAAACAATCTTTAGGGACGAAGGGAGAGAATTATTATCAAATAAGCACTGGATGGTTGTCATTTCGTATAGCTTCCAATATTCGAAGATGATTAGTCTAAATGCAATGATATTCATAGCATTGTTGATGTCATTTTGATTGTACACGCTGCCTGAAAACATGTTTGCATTGGCTTAGATGCATTCTGTAACCGAATATTATATTGAGGAATTCACATTTAAGTTTGAATGAATATATATTTGAGACTATGGATGAAGGTAGTGCTGAAATGAATGAAAGAACCATACAGCTCAGTCTGTATTCTCTCAAACTGCACTTATTATGGAATAAAGTATGGATGATGGAAAAGAAATATGTAACTTTTCTGTGGAGGATGGTTATTTCAGTGCTGCCACTGGTTCTATCCACCGTGCATATTCATTTAAAAAAGCATTTTTCACTTGGTTATATTTGGTAAATTAGAACCTGCCAGATCATGTCTAAACCTGTATAATAGTCTTCACTTAAGAACTCTTTACTTCAGTTGCCAACTGAAGTCTCTATTTCAGTTCTGGTAACAGTGCAATGCACTTTATCTTTTCGCAGGATTTATTTCTACCGTCAGTTGTTTCTCTAGCTGTTCCTTTGGCTCTGCTGTCCCTTACAAGGTATATTTCTAGCATAGACCTGAAGAGCTTCTTGAATTTCGGAAATATTTTAAGAAATAGAGTGGAGATGAAACTATATTAGAAATTATTTGTGTTCAGTGAAGTGAATGGGAAAGGACAAAACTCCGCTGAGGTTCTGGCATCCGAACAGATGGCT</genome_strand>
        <mrna_strand>GCTCTTTCCCAGTTGTCACATGCGACTGCTGAAGTTAGTGAAATAGTGTTCTTTTTGCTTGGTGCGATGACCATTGTTGAGATAGTTGATGCTCATCAGGGATTTAAGCTGGTTACAGACAACATCACTACTCGCAAGCCAATAACTCTGCTTTGGGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGTTTTGTGACTTTCTTCCTCAGTTCAATCCTTGACAATCTGACTTCTACAATTGTGATGGTCTCCTTACTGAGGAAACTGGCACCACCTTCAGAATACCGAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTTGGCGCTGTTGTTGTTATAGCAGCAAATGCCGGTGGAGCATGGACTCCCATAGGTGATGTTACAACTACAATGCTCTGGATACACGGCCAAGTATCCACGTTACCAACGATGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTATTTCTACCGTCAGTTGTTTCTCTAGCTGTTCCTTTGGCTCTGCTGTCCCTTACAAG...................................................................................................TGAAGTGAATGGGAAAGGACAAAACTCCGCTGAGGTTCTGGCATACGAACAGATGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E224168" ref_strand="+" ref_description="SGN-E224168 [cLEL-19-N18](-)">
      <seq>gtgttctttttgcttggtgcgatgaccattgttaagatagttaatgctcatcagggatttaagctggttacagacaccatcactactcgcaagccaataactctgctttgggtggtaggttttgtgactttcttcctcagttcaatccttgacaatctgacttctacaattgtgatggtctccttactgaggaaactggcaccaccttcagaataccnaaagcttcttggcgctgttgttgttatagcagcaaatgccggtggagcatggactcccataggtgatgttacaactacaatgctctggatacacggccaagtatccacgttaccaacgatgaaggatttatttctaccgtcagttgtttctctagctgttcctttggctctgctgtcccttacaagtgaagtgaatgggaaaggacaaaactccgctgaggttctggcatccgaacagatggct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="51488" stop="46195"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51188" g_stop="51075" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="114" r_length="114" r_score="0.974"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51074" i_stop="50066" i_length="1009">
            <donor d_prob="0.995" d_score="0.98"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50065" g_stop="49959" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="115" r_stop="221" r_length="107" r_score="0.991"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49958" i_stop="48887" i_length="1072">
            <donor d_prob="0.781" d_score="0.98"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48886" g_stop="48766" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="222" r_stop="342" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48765" i_stop="46714" i_length="2052">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46713" g_stop="46652" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="343" r_stop="404" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46651" i_stop="46553" i_length="99">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46552" g_stop="46495" g_length="58"/>
          <reference_exon_boundary r_type="cDNA" r_start="405" r_stop="462" r_length="58" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-E224168" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>462</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E224168" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51188" e_stop="51075"/>
          <exon e_start="50065" e_stop="49959"/>
          <exon e_start="48886" e_stop="48766"/>
          <exon e_start="46713" e_stop="46652"/>
          <exon e_start="46552" e_stop="46495"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGTTCTTTTTGCTTGGTGCGATGACCATTGTTGAGATAGTTGATGCTCATCAGGGATTTAAGCTGGTTACAGACAACATCACTACTCGCAAGCCAATAACTCTGCTTTGGGTGGTTAGTGATTCAATAACCTTTCCTCTTTCAAATTACTCTCGGTTCTGTTTAGTTAAGCAGTTATTTATTTTTCTCTATGAATATAGACGATTCTGTAATATCTTGCTTTTGGTCTAACAAAAACAGATAGTGGTCTGATTTTGCATGAAATATGTTACTTGATTGAAAATGCATATATACAATTCAAAATAAGTAAATCTAAGAATGTCAGAGTAAGGAATAATACAAGTGGATAATAATGGAAGGACCAAGTTACCTACCGATTTAGCAATCTATTAAGCCCCATGTTTCGTTCCAGCATATTCAGTTGTTGTACTCTTTTATGAAATGCATGTTAGAATGCAAGGCATCCAAAGTTTTCTTCTGTTGGAAAAGTCATCTCTTAGGAATTGACAATTTGTCAAAGTAAGAACTGCTCATTTTTTTTCTTCAATGGAGAGATGCACAGTTCTGTCAGAGAGGGGTTGCTATTAATTGATGGCTCTTAATAGTCTTTGTTGTACGTATTTCACATATATTGGCTTCTAATGTCCTTTCAATCATAAAATTTCTTATGAAATACATGTTCTTGGGCCGGAATTGTCCATGCTAGGATATATAGAAATCTTAGATTCATTTATTTTAAGAATTGACAATTTCTCAAAGTAGCTGTATAATTTTTACTTGATATGCAGATGCATAGTTATATCAAAGCGGGTTTGCTTTTAGTTGATCATCCTTAGTAGTCTACGTAGTAACTATTTTGAATTTAATTTGATTTTGCTCCTAGATATTGTAGGATCTTATAATGCGCAGCAGATGGGGGTGGTATGATTACCTTCACTAGATGAAGGACATGACATACATAGATGATTTATACACAGAAGGTGGCTAGCCAATAATATGATTTACCACATTAGCCTTTCGTTCAAAAAAAAATGATTTAACTGAGTCAAGACTGATTCAACATTTTGTTTGCTGCTTGTTTCCTGTAATTGTCATTAACTTTCTAAAGTTATGGTAATTTCAGGTAGGTTTTGTGACTTTCTTCCTCAGTTCAATCCTTGACAATCTGACTTCTACAATTGTGATGGTCTCCTTACTGAGGAAACTGGCACCACCTTCAGAATACCGAAAGTAAGTGTCAGCAGCTTTGAGCCTCATCTGTTGAACCTTCTAGTAGGAGCAAAGATATTATGATTTACTCTCATATTTGGTCTAAAGTTATTTGATCTCGGAATATCAATCTTGATTTCCATAAGTCTCAAGAGGTATTGATATTCGAACTCGAGAGAAGATCAGAAAGAACAAGGGATGTACATGTGTAAGCAAGTTAGATGTCTATACATTATCAAAAAAAAGAAGTTAGATGTCTATAAGAGAAATGACAAGCCCAGATGCTTTCAGGATGCAACTTTGGAGTAGCTCAAGGTTCTTGTATTACAATTGTGGGAATTTTTTAAAATGAGAGTCACTTGAGTTAAATTTTTGATTTAATAAGGCAGTGAATGGTCGTATGGTGATGCGATGTTTAAATGCATTAAGTAACTTCACCCTAGCTATATCAATAAGTATCTTCTAGAACTTTACGCTTATCTTTTAGCAAATAATCATGGTTGTGTTTCTGTGCAAGTATAGACTAGACTCTCTTGTATCTCAGACTACATTATTCATTTTGAGTTATTTTCCAGAATTCTGAACCTTTTCTAGCTTTTGTTTGTTCAGCCTTAACAGGTGGATCTGGTTTTCAAATTAACAATCTTCAAAGTTTGCAGATTGTGGATATCCCTGCCCCTTGTACTGTAAAACTTAATATCTAGGGATAGGCCTGAGAAACTTTTCCTGAGATAAATATTGACAATTTCTAATTACTTTGAGCACCCGAGTGTGTGGCCTAGTGGTCAGTGAAGTGGTTGAGAGCCATGAGGTCTCAGGTTCAAATCTCAGCTAGAGACAAAAATTCTAGGTGATTCTTCCAACTGACCTAGCCTTGGTGAATGTAGTTCCTGGAACCTGTTGCTGGTGGGAGGGGGCACGTATCCCGTGGAATAAGTCGCGGGTGAAAGCTGGCCCAGACACCATGGTCATCAAAAACAATAAATTACTTTATCTTTCTCCTAGACTACCTGTTTCTTGCTCGGTATCCTTTTTCTGAAGGCTCTGTTGTATTTATTGTGAAGTATATAATCTGTTAATTATTTGTTCCCAGGCTTCTTGGCGCTGTTGTTGTTATAGCAGCAAATGCCGGTGGAGCATGGACTCCCATAGGTGATGTTACAACTACAATGCTCTGGATACACGGCCAAGTATCCACGTTACCAACGATGAAGGTTTTTGAATTTTTTTATCTCATTGCTTCTATTTATTTACTAGTTTCTGAGTACGTGCGTTGCACATGTGACCCATGCAAGTTTTTATAGATCCATTACAACGATTAAGTATATATGATTAGTAATAAAACAACAATTACAAAAAAAAAAAAATTAAAAAGGGTGACAAAAACAACATTTACAAACTTTGAACTTTGTTTAGTAGTTAGCAAATTTTCAATTATGTCACAAATGGCTAACAGAGCCCCAAAAAAGTACAGACTTACGAAAATAAAAAATTCAAGAAAATTAAATTAAAGAAGTCTAATATATATAGAGAAAACACAGAAAATGAATAGAGAAGGAAAAATATACAACATACACATCCTTTCTTAAACTTTAATCATAACAATATAGAGGTAAAACAATATACAAAATCCATACATATTTTTTTGAAATTTTTGCTGGTGACTTTCATAACCAATCAAAATTGTAGAGTCTTCTTCATTGAGTTAGAATGAATCAAATATTACAAAATTAAATATAAGTGCTTCACTAGTTTGATAATATAATGACAAAGGATAATTTTGTTGGGGGTCTCATAAAACAAAAAAAATATGAGTTTATATAGATAAAAGTGCAGAAAATCCAAAAGATATTATTAAGTTTCAAATTAAACATTTGGAGGTTATGATTATTAAAAGCATGTAATATCAAGATATTAATTGATAGGTAATTATATATAATTCATGAATGTGAATATTTAAAGTAAATAAATAATCATAATAAATAAATGAAGAAAGAAAAAGTTTGGTGAAAATGATATTTGTTGTTTCAATTTGAGAACTTATACAATCTGAAATGAATAATAATAACATAAACCAATTGGGGAAGAACAAAAAAAAATCTTTAATCTCAATAAATATATGCATATCTATACGAAATTTCGTGGTAGAGCAAGAGATGGTTGAATCCAAACGGTTGGTATTAACTCCTCCTTTGGGCTCTTCATTGTATATTTATAAGTTATTATAACGCTTCATTATTTTTTCATTTATTAGCACAGTAATTAATAAAAAGATAATTATGTGCAATTTAAATGTGATTTAACAAAATTTTTTAAATTATTATGTCACTTCCCTTTTTCACTTTTTTTTAGCTATTGCCCCCCTATTCAACTACTTAGTTGCTCACAATGAAAAAAAGAAACATTGTATGGCTTGACTACAAGAAGTTGAGTTTTGTCAAACTGAAGATATTAGCGGTTTTTGGGATTATTTGATGGAACAGTTATCTAATTTAAGTCATTAAGTAGTAGAAAATGATAAGTTGTAACATCTAACCATTGTAATTATTGATTTTAACTTTAAAAGATTTTAATAAAAAAAATAAGTGAAGGGCATTTTCGTAATTCAACTTTGAACTTAAAATCTTCCCACTTATAATAATATATGATATATGTACATCTTTCCTTGTGTTATAATGAAGGAAACAATCTTTAGGGACGAAGGGAGAGAATTATTATCAAATAAGCACTGGATGGTTGTCATTTCGTATAGCTTCCAATATTCGAAGATGATTAGTCTAAATGCAATGATATTCATAGCATTGTTGATGTCATTTTGATTGTACACGCTGCCTGAAAACATGTTTGCATTGGCTTAGATGCATTCTGTAACCGAATATTATATTGAGGAATTCACATTTAAGTTTGAATGAATATATATTTGAGACTATGGATGAAGGTAGTGCTGAAATGAATGAAAGAACCATACAGCTCAGTCTGTATTCTCTCAAACTGCACTTATTATGGAATAAAGTATGGATGATGGAAAAGAAATATGTAACTTTTCTGTGGAGGATGGTTATTTCAGTGCTGCCACTGGTTCTATCCACCGTGCATATTCATTTAAAAAAGCATTTTTCACTTGGTTATATTTGGTAAATTAGAACCTGCCAGATCATGTCTAAACCTGTATAATAGTCTTCACTTAAGAACTCTTTACTTCAGTTGCCAACTGAAGTCTCTATTTCAGTTCTGGTAACAGTGCAATGCACTTTATCTTTTCGCAGGATTTATTTCTACCGTCAGTTGTTTCTCTAGCTGTTCCTTTGGCTCTGCTGTCCCTTACAAGGTATATTTCTAGCATAGACCTGAAGAGCTTCTTGAATTTCGGAAATATTTTAAGAAATAGAGTGGAGATGAAACTATATTAGAAATTATTTGTGTTCAGTGAAGTGAATGGGAAAGGACAAAACTCCGCTGAGGTTCTGGCATCCGAACAGATGGCT</genome_strand>
        <mrna_strand>GTGTTCTTTTTGCTTGGTGCGATGACCATTGTTAAGATAGTTAATGCTCATCAGGGATTTAAGCTGGTTACAGACACCATCACTACTCGCAAGCCAATAACTCTGCTTTGGGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGTTTTGTGACTTTCTTCCTCAGTTCAATCCTTGACAATCTGACTTCTACAATTGTGATGGTCTCCTTACTGAGGAAACTGGCACCACCTTCAGAATACCNAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTTGGCGCTGTTGTTGTTATAGCAGCAAATGCCGGTGGAGCATGGACTCCCATAGGTGATGTTACAACTACAATGCTCTGGATACACGGCCAAGTATCCACGTTACCAACGATGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTATTTCTACCGTCAGTTGTTTCTCTAGCTGTTCCTTTGGCTCTGCTGTCCCTTACAAG...................................................................................................TGAAGTGAATGGGAAAGGACAAAACTCCGCTGAGGTTCTGGCATCCGAACAGATGGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E539761" ref_strand="+" ref_description="SGN-E539761 [TUS-59-K24]">
      <seq>tacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggttgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgctatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="+" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="68428" stop="69676"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68728" g_stop="69376" g_length="649"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="649" r_length="649" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="+" ref_id="SGN-E539761" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>649</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E539761" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68728" e_stop="69376"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGATCCACAGACAGAAACTGATATTCCAGAATCTATGACATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTTTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCTGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAACGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</genome_strand>
        <mrna_strand>TACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E284788" ref_strand="+" ref_description="SGN-E284788 [cLES-3-F2]">
      <seq>acgttagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggtcaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagtcttcggggagaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="+" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="68429" stop="69413"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68729" g_stop="69113" g_length="385"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="385" r_length="385" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="+" ref_id="SGN-E284788" ref_strand="+">
        <total_alignment_score>0.974</total_alignment_score>
        <cumulative_length_of_scored_exons>385</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E284788" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68729" e_stop="69113"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGATCCACAGACAGAAACTGATATTCCAGAATCTATGACATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTTTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAA</genome_strand>
        <mrna_strand>ACGTTAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGTCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGTCTTCGGGGAGAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E343338" ref_strand="+" ref_description="SGN-E343338 [cTOF-17-N22]">
      <seq>gtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="+" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="69087" stop="70484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69387" g_stop="70184" g_length="798"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="808" r_length="808" r_score="0.967"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="+" ref_id="SGN-E343338" ref_strand="+">
        <total_alignment_score>0.967</total_alignment_score>
        <cumulative_length_of_scored_exons>798</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E343338" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69387" e_stop="70184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTTCCAAGTCCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGATATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCAGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTATCTTAGAGGTACATCTGACGTTGG--TC--------AGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E258205" ref_strand="+" ref_description="SGN-E258205 [cLEG-49-B23]">
      <seq>aatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctggttctgtttattaactttataaataaaaggtattataagagtaacaatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="77079" stop="76189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76778" g_stop="76444" g_length="335"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="329" r_length="329" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-E258205" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>335</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E258205" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76778" e_stop="76444"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTTCTTTCTCTACATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCATTTTATCTTGGGAGAAATTAATCCATAACCTTGGATACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTAGACTCGGATTAATTCTTGTATTCTATATTATTTTCTACTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTAATAAATACAAGTTATTGTAAGAATAACAGAAT</genome_strand>
        <mrna_strand>AATTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTATTTCTG-----G-TTCTGTTTATTAACTTTATAAATAAAAGGTATTATAAGAGTAACAATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E262800" ref_strand="+" ref_description="SGN-E262800 [cLEG-63-P6]">
      <seq>cttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaattaatccataaccttgggtacagtgagggaattaaatttcttaaggacacatagtagtttctgtggactcggattaattcttgtattctatattattttctgcttcatcttatttctgtttctgtttattaactttataaataaaagttattataagagtaacaatcttaagaaaatttata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="77133" stop="76189"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76833" g_stop="76448" g_length="386"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="379" r_length="379" r_score="0.943"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-E262800" ref_strand="+">
        <total_alignment_score>0.943</total_alignment_score>
        <cumulative_length_of_scored_exons>386</cumulative_length_of_scored_exons>
        <coverage percentage="0.972" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262800" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76833" e_stop="76448"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTGAAAATTTTTTCTTTCTCTACATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCATTTTATCTTGGGAGAAATTAATCCATAACCTTGGATACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTAGACTCGGATTAATTCTTGTATTCTATATTATTTTCTACTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTAATAAATACAAGTTATTGTAAGAATAACA</genome_strand>
        <mrna_strand>CTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAA-TTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATTAATCCATAACCTTGGGTACAGTGAGGGAATTAAATTTCTTAAGGACACATAGTAGTTTCTGTGGACTCGGATTAATTCTTGTATTCTATATTATTTTCTGCTTCATCTTA------TTTCTGTTTCTGTTTATTAACTTTATAAATAAAAGTTATTATAAGAGTAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E261310" ref_strand="+" ref_description="SGN-E261310 [cLEG-68-F10]">
      <seq>ggacatgttccttgctgaaaatggctataaaaggaagtcaaattttgattttttaaacactgaaaatttttctttctctgcatttatttttctctcaaataaaatcaaagtgtcgatcgactgagtctgtgtgacttgttgttgttcttaagttcgttgaagttaaagaagtttgaggtaccgctatttctttaacaggtttaatccgttttatcttgagagaaatt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="77142" stop="76316"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76843" g_stop="76616" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="227" r_length="227" r_score="0.965"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-E261310" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>228</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E261310" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76843" e_stop="76616"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTGAAAATTTTTTCTTTCTCTACATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCATTTTATCTTGGGAGAAATT</genome_strand>
        <mrna_strand>GGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAAATTTTGATTTTTTAAACACTGAAAA-TTTTTCTTTCTCTGCATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGTTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCGTTTTATCTTGAGAGAAATT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E537611" ref_strand="+" ref_description="SGN-E537611 [TUS-56-E22](-)">
      <seq>acatcaaatgcagccgaataacatatttaatgtggtcagtaccaccacgtcttcaccacagcagccccttttcccaaacaaacaactgtggaatttgcatcacccatgcaattagggagcccagggaaaaggcttcccatgtctaatccgtctgcaaatactagtagtgtcatgcagggtggtgttatgaccatgccagtaaaaggagtatcccctggaaatcttgatacatcttctctttcaccttcaccttatgcatgtggtgaaggtggaagaggaaggagatcatgcacctcttttgaaaaagttgttgagagaaggcgtaagaggatgataaagaacagggagtctgcggccagatcaagggatcggaagcaggcatatactttagagttggaagctgaagtagcaaagcttaaagaaattaagcaagagttgcagaagaaacaggctgaatttatcgagaagcagaaaaatcagttattggaaaagatgaatgtgccatgggaaaataaactaatatgcttgcgaaggacagtgacgggaccttggtagtcagtagaagagcaaattcccgagtaaacactcggagaattggtagacaggagattgaagtgaaatagcttttccttcctcttttttgtttcaacaaacaagttcagagcctgctcctcgaccctcctcccagcctgtgaattaaaatatgttctaattcacatatgttggtcacaggatagataactttatgtatcgactatagtacaggacaggtgctgtgtacctgtacgttatgtaaacaatgttcttgcataaagtttcctcatgtgctttttttgtaaaaaagaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="90939" stop="88204"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90639" g_stop="90261" g_length="379"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.989"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90260" i_stop="89395" i_length="866">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89394" g_stop="89323" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="450" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89322" i_stop="89229" i_length="94">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89228" g_stop="89199" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="451" r_stop="480" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89198" i_stop="88861" i_length="338">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88860" g_stop="88506" g_length="355"/>
          <reference_exon_boundary r_type="cDNA" r_start="481" r_stop="835" r_length="355" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-E537611" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>836</cumulative_length_of_scored_exons>
        <coverage percentage="0.987" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90639" e_stop="90261"/>
          <exon e_start="89394" e_stop="89323"/>
          <exon e_start="89228" e_stop="89199"/>
          <exon e_start="88860" e_stop="88506"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACATCAAATTGCAG-CGAATAACATATTTAATGTGGTCAGTACCACCACGTCTTCACCACAGCAGCCCCTTTTTCCCAAACAAACAACTGTGGAATTTGCATCACCCATGCAATTAGGGAGCCCAGGGAAAAGGCTTCCCATGTCTAATCCGTCTGCAAATACTAGTAGTGTCATGCAGGGTGGTGTTATGACCATGCCAGTAAAAGGAGTATCCCCTGGAAATCTTGATACATCTTCTCTTTCACCTTCACCTTATGCATGTGGTGAAGGTGGAAGAGGAAGGAGATCATGCACCTCTTTTGAAAAAGTTGTTGAGAGAAGGCGTAAGAGGATGATAAAGAACAGGGAGTCTGCGGCCAGATCAAGGGATCGGAAGCAGGTGAATTTATATTTTGAATTTGGCTTATGAGTTAATTCTTTTGTTTCTGATTCTTGAGGCCTGTGCCTGTTTTTTCTGGTTTCCTTTGTCTTTTAAAATCTGTCACTCTGGTCAAGGATTCGATACAATTCAACAGAATCTAAGAAATGATCAAAATAGAAATGATTTTCGAATTTGATTCTATAAAAATTCCTGTTTCATTTTTGAATGAAGTTAGACGATAGTCCAGGTGCACTTCTTACTTCTATCTATACATTTCCAGATATCATTGCTTCGATACGGTCCCGAATCCGTTTCACTTCATTCTTCCCCGAGCGGGAATACGTCGCTTACAATATTATTAAAGAAAGGGCGCTTATCAGCTCTACAACTTTTAGTGCCATATCTTCCAAAACCAAGTTGTGTACCGTCCGGTTTGCAACCCCTACTACATCTGCCTTTACAATATTTACTATATTTTGTACATTTCGGATATAGCATGTCCCCCCTTTTTTTGACTATATGAAATCTAATTCATTCTCCCATCGAGAGGATCAAAAGCGCGATAAAGAAAGATAGATTCATAGTGGGGTGATGTGCCTGCGCTAGGTATTTTCTTTCTTCTGGCCGTAGGTGTGATCAAACTACTCATTCATTCAACTCAATGACACAAATGAATTAGTAGTTGGCAGAGTTTCTCACACCTCCTTTTTCTCCTTACTTTAGTTTAGACCTTGCAATGCATGTGGGGGTGGGGTGGGGGAGTCGTGAGAGTGCGAGGAAGATTTTAACATGCTGGGATGCTCCAGGCTGGTTTGAGTATCAGTTTAGTGTTATGAAATGATAATGCCATTAACGGACTTCTTCATTTGTCTGGGATTTGTCAGGCATATACTTTAGAGTTGGAAGCTGAAGTAGCAAAGCTTAAAGAAATTAAGCAAGAGTTGCAGAAGAAACAGGTATGATAACCATGTTTGCGAATTACTGGATTACTTTAATATTCTTGATAAGTGTTATGGTTGTGTAACCACGGGTTTTGAATGCTTCATGCAGGCTGAATTTATCGAGAAGCAGAAAAATCAGGTATAGACTTCTTTCCTGCTGTCAATATGTTGTACGAATTACGATTAAAATACTTTTTCCTACTTAATCATAGGACTAGATACAGGGATATTGTGAATTAAACAATCTAAGCAATAGAATTAGCAATTGAAATAAGGGCAGGAAGTAGATAATTTACTAATAGCAAAATGATTAAAGCTTCAAATGGCTGTACAGCTTTTCTATAAAAGTCATCAGCTGTTAAGACGTGATAACTTCGCGAAGGAAACTGTGTATGTGATTTGTTAAGCCAAGTTGTTCGTCTATAGGTCAAATGAGCTAAATGTGGTTGTTAAGTAGTCTGTTTTGTCCAATTACAGTTATTGGAAAAGATGAATGTGCCATGGGAAAATAAACTAATATGCTTGCGAAGGACAGTGACGGGACCTTGGTAGTCAGTAGAAGAGCAAATTCCCGAGTAAACACTCGGAGAATTGGTAGACAGGAGATTGAAGTGAAATAGCTTTTCCTTCCTCTTTTTTGTTTCAACAAACAAGTTCAGAGCCTGCTCCTCGACCCTCCTCCCAGCCTGTGAATTAAAATATGTTCTAATTCACATATGTTGGTCACAGGATAGATAACTTTATGTATCGACTATAGTACAGGACAGGTGCTGTGTACCTGTACGTTATGTAAACAATGTTCTTGCATAAAGTTTCCTCATGTGCTTTTTTT</genome_strand>
        <mrna_strand>ACATCAAA-TGCAGCCGAATAACATATTTAATGTGGTCAGTACCACCACGTCTTCACCACAGCAGCCCC-TTTTCCCAAACAAACAACTGTGGAATTTGCATCACCCATGCAATTAGGGAGCCCAGGGAAAAGGCTTCCCATGTCTAATCCGTCTGCAAATACTAGTAGTGTCATGCAGGGTGGTGTTATGACCATGCCAGTAAAAGGAGTATCCCCTGGAAATCTTGATACATCTTCTCTTTCACCTTCACCTTATGCATGTGGTGAAGGTGGAAGAGGAAGGAGATCATGCACCTCTTTTGAAAAAGTTGTTGAGAGAAGGCGTAAGAGGATGATAAAGAACAGGGAGTCTGCGGCCAGATCAAGGGATCGGAAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATATACTTTAGAGTTGGAAGCTGAAGTAGCAAAGCTTAAAGAAATTAAGCAAGAGTTGCAGAAGAAACAG..............................................................................................GCTGAATTTATCGAGAAGCAGAAAAATCAG..................................................................................................................................................................................................................................................................................................................................................TTATTGGAAAAGATGAATGTGCCATGGGAAAATAAACTAATATGCTTGCGAAGGACAGTGACGGGACCTTGGTAGTCAGTAGAAGAGCAAATTCCCGAGTAAACACTCGGAGAATTGGTAGACAGGAGATTGAAGTGAAATAGCTTTTCCTTCCTCTTTTTTGTTTCAACAAACAAGTTCAGAGCCTGCTCCTCGACCCTCCTCCCAGCCTGTGAATTAAAATATGTTCTAATTCACATATGTTGGTCACAGGATAGATAACTTTATGTATCGACTATAGTACAGGACAGGTGCTGTGTACCTGTACGTTATGTAAACAATGTTCTTGCATAAAGTTTCCTCATGTGCTTTTTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E321641" ref_strand="-" ref_description="SGN-E321641 [cTOB-25-P17]">
      <seq>agtagtgtcatgcagggtggtgttatgaccatgccagtaaaaggagtatcccctggaaatcttgatacatcttctctttcaccttcaccttatgcatgtggtgaaggtggaagaggaaggagatcatgcacctcttttgaaaaagttgttgagagaaggcgtaagaggatgataaagaacagggagtctgcggccagatcaagggatcggaagcaggcatatactttagagttggaagctgaagtagcaaagcttaaagaaattaagcaagagttgcagaagaaacaggctgaatttatcgagaagcagaaaaatcagttattggaaaagatgaatgtgccatgggaaaataaactaatatgcttgcgaaggacagtgacgggaccttggtagtcagtagaagagcaaattcccgagtaaacactcggagaattggtagacaggagattgaagtgaaatagcttttccttcctcttttttgtttcaacaaacaagttcagagcctgctcctcgaccctcctcccagcctgtgaattaaaatatgttctaattcacatatgttggtcacaggatagataactttatgtatcgactatagtacaggacaggtgctgtgtacctgtacgttatgtaaacaatgttcttgcataaagtttcctcatgtgcttaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="90776" stop="88211"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90476" g_stop="90261" g_length="216"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="216" r_length="216" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90260" i_stop="89395" i_length="866">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89394" g_stop="89323" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="288" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89322" i_stop="89229" i_length="94">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89228" g_stop="89199" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="289" r_stop="318" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89198" i_stop="88861" i_length="338">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88860" g_stop="88511" g_length="350"/>
          <reference_exon_boundary r_type="cDNA" r_start="319" r_stop="668" r_length="350" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="669" polyA_stop="686"/>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-E321641" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>668</cumulative_length_of_scored_exons>
        <coverage percentage="0.974" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E321641" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="90476" e_stop="90261"/>
          <exon e_start="89394" e_stop="89323"/>
          <exon e_start="89228" e_stop="89199"/>
          <exon e_start="88860" e_stop="88511"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTAGTGTCATGCAGGGTGGTGTTATGACCATGCCAGTAAAAGGAGTATCCCCTGGAAATCTTGATACATCTTCTCTTTCACCTTCACCTTATGCATGTGGTGAAGGTGGAAGAGGAAGGAGATCATGCACCTCTTTTGAAAAAGTTGTTGAGAGAAGGCGTAAGAGGATGATAAAGAACAGGGAGTCTGCGGCCAGATCAAGGGATCGGAAGCAGGTGAATTTATATTTTGAATTTGGCTTATGAGTTAATTCTTTTGTTTCTGATTCTTGAGGCCTGTGCCTGTTTTTTCTGGTTTCCTTTGTCTTTTAAAATCTGTCACTCTGGTCAAGGATTCGATACAATTCAACAGAATCTAAGAAATGATCAAAATAGAAATGATTTTCGAATTTGATTCTATAAAAATTCCTGTTTCATTTTTGAATGAAGTTAGACGATAGTCCAGGTGCACTTCTTACTTCTATCTATACATTTCCAGATATCATTGCTTCGATACGGTCCCGAATCCGTTTCACTTCATTCTTCCCCGAGCGGGAATACGTCGCTTACAATATTATTAAAGAAAGGGCGCTTATCAGCTCTACAACTTTTAGTGCCATATCTTCCAAAACCAAGTTGTGTACCGTCCGGTTTGCAACCCCTACTACATCTGCCTTTACAATATTTACTATATTTTGTACATTTCGGATATAGCATGTCCCCCCTTTTTTTGACTATATGAAATCTAATTCATTCTCCCATCGAGAGGATCAAAAGCGCGATAAAGAAAGATAGATTCATAGTGGGGTGATGTGCCTGCGCTAGGTATTTTCTTTCTTCTGGCCGTAGGTGTGATCAAACTACTCATTCATTCAACTCAATGACACAAATGAATTAGTAGTTGGCAGAGTTTCTCACACCTCCTTTTTCTCCTTACTTTAGTTTAGACCTTGCAATGCATGTGGGGGTGGGGTGGGGGAGTCGTGAGAGTGCGAGGAAGATTTTAACATGCTGGGATGCTCCAGGCTGGTTTGAGTATCAGTTTAGTGTTATGAAATGATAATGCCATTAACGGACTTCTTCATTTGTCTGGGATTTGTCAGGCATATACTTTAGAGTTGGAAGCTGAAGTAGCAAAGCTTAAAGAAATTAAGCAAGAGTTGCAGAAGAAACAGGTATGATAACCATGTTTGCGAATTACTGGATTACTTTAATATTCTTGATAAGTGTTATGGTTGTGTAACCACGGGTTTTGAATGCTTCATGCAGGCTGAATTTATCGAGAAGCAGAAAAATCAGGTATAGACTTCTTTCCTGCTGTCAATATGTTGTACGAATTACGATTAAAATACTTTTTCCTACTTAATCATAGGACTAGATACAGGGATATTGTGAATTAAACAATCTAAGCAATAGAATTAGCAATTGAAATAAGGGCAGGAAGTAGATAATTTACTAATAGCAAAATGATTAAAGCTTCAAATGGCTGTACAGCTTTTCTATAAAAGTCATCAGCTGTTAAGACGTGATAACTTCGCGAAGGAAACTGTGTATGTGATTTGTTAAGCCAAGTTGTTCGTCTATAGGTCAAATGAGCTAAATGTGGTTGTTAAGTAGTCTGTTTTGTCCAATTACAGTTATTGGAAAAGATGAATGTGCCATGGGAAAATAAACTAATATGCTTGCGAAGGACAGTGACGGGACCTTGGTAGTCAGTAGAAGAGCAAATTCCCGAGTAAACACTCGGAGAATTGGTAGACAGGAGATTGAAGTGAAATAGCTTTTCCTTCCTCTTTTTTGTTTCAACAAACAAGTTCAGAGCCTGCTCCTCGACCCTCCTCCCAGCCTGTGAATTAAAATATGTTCTAATTCACATATGTTGGTCACAGGATAGATAACTTTATGTATCGACTATAGTACAGGACAGGTGCTGTGTACCTGTACGTTATGTAAACAATGTTCTTGCATAAAGTTTCCTCATGTGCTT</genome_strand>
        <mrna_strand>AGTAGTGTCATGCAGGGTGGTGTTATGACCATGCCAGTAAAAGGAGTATCCCCTGGAAATCTTGATACATCTTCTCTTTCACCTTCACCTTATGCATGTGGTGAAGGTGGAAGAGGAAGGAGATCATGCACCTCTTTTGAAAAAGTTGTTGAGAGAAGGCGTAAGAGGATGATAAAGAACAGGGAGTCTGCGGCCAGATCAAGGGATCGGAAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATATACTTTAGAGTTGGAAGCTGAAGTAGCAAAGCTTAAAGAAATTAAGCAAGAGTTGCAGAAGAAACAG..............................................................................................GCTGAATTTATCGAGAAGCAGAAAAATCAG..................................................................................................................................................................................................................................................................................................................................................TTATTGGAAAAGATGAATGTGCCATGGGAAAATAAACTAATATGCTTGCGAAGGACAGTGACGGGACCTTGGTAGTCAGTAGAAGAGCAAATTCCCGAGTAAACACTCGGAGAATTGGTAGACAGGAGATTGAAGTGAAATAGCTTTTCCTTCCTCTTTTTTGTTTCAACAAACAAGTTCAGAGCCTGCTCCTCGACCCTCCTCCCAGCCTGTGAATTAAAATATGTTCTAATTCACATATGTTGGTCACAGGATAGATAACTTTATGTATCGACTATAGTACAGGACAGGTGCTGTGTACCTGTACGTTATGTAAACAATGTTCTTGCATAAAGTTTCCTCATGTGCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E429844" ref_strand="-" ref_description="SGN-E429844 [STM-52-B4]">
      <seq>tgcatgtggtgaaggtggaagaggaaggagatcatgcacctcttttgaaaaagttgttgagagaaggcgtaagaggatgataaagaacagggagtctgcggccagatcaagggatcggaaacaggcatatactttagagttggaagctgaagtggcaaagcttaaagaaattaagcaagagttgcagaagaaacaggctgaatttatcgagaagcagaaaaaacagttattggaaaagatgaatgtgccatgggaaaataaactaatatgcttgagaaggacagtgacgggaccttggtagtcagtagaagagcaaattcccgagtaaacgcttggagaattggtagacaggagtttgaagtgaaatatcttttttctgtgtcttttttgtttcaacaaacaagttcggaacctgctcctctaccctcctcccagcctgtgaattgaaatatgttctaattcacatctgttcgtcacatgatagataactttatgtatagtacaggacaggtgctgtgtacctgtacattaaataaacaatattcttgcataaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="90684" stop="88227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90384" g_stop="90261" g_length="124"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="124" r_length="124" r_score="0.992"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90260" i_stop="89395" i_length="866">
            <donor d_prob="0.999" d_score="0.98"/>
            <acceptor a_prob="0.983" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89394" g_stop="89323" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="125" r_stop="196" r_length="72" r_score="0.986"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89322" i_stop="89229" i_length="94">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89228" g_stop="89199" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="197" r_stop="226" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89198" i_stop="88861" i_length="338">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.853" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88860" g_stop="88522" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="227" r_stop="559" r_length="333" r_score="0.900"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-E429844" ref_strand="-">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>565</cumulative_length_of_scored_exons>
        <coverage percentage="1.011" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E429844" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="90384" e_stop="90261"/>
          <exon e_start="89394" e_stop="89323"/>
          <exon e_start="89228" e_stop="89199"/>
          <exon e_start="88860" e_stop="88522"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGCATGTGGTGAAGGTGGAAGAGGAAGGAGATCATGCACCTCTTTTGAAAAAGTTGTTGAGAGAAGGCGTAAGAGGATGATAAAGAACAGGGAGTCTGCGGCCAGATCAAGGGATCGGAAGCAGGTGAATTTATATTTTGAATTTGGCTTATGAGTTAATTCTTTTGTTTCTGATTCTTGAGGCCTGTGCCTGTTTTTTCTGGTTTCCTTTGTCTTTTAAAATCTGTCACTCTGGTCAAGGATTCGATACAATTCAACAGAATCTAAGAAATGATCAAAATAGAAATGATTTTCGAATTTGATTCTATAAAAATTCCTGTTTCATTTTTGAATGAAGTTAGACGATAGTCCAGGTGCACTTCTTACTTCTATCTATACATTTCCAGATATCATTGCTTCGATACGGTCCCGAATCCGTTTCACTTCATTCTTCCCCGAGCGGGAATACGTCGCTTACAATATTATTAAAGAAAGGGCGCTTATCAGCTCTACAACTTTTAGTGCCATATCTTCCAAAACCAAGTTGTGTACCGTCCGGTTTGCAACCCCTACTACATCTGCCTTTACAATATTTACTATATTTTGTACATTTCGGATATAGCATGTCCCCCCTTTTTTTGACTATATGAAATCTAATTCATTCTCCCATCGAGAGGATCAAAAGCGCGATAAAGAAAGATAGATTCATAGTGGGGTGATGTGCCTGCGCTAGGTATTTTCTTTCTTCTGGCCGTAGGTGTGATCAAACTACTCATTCATTCAACTCAATGACACAAATGAATTAGTAGTTGGCAGAGTTTCTCACACCTCCTTTTTCTCCTTACTTTAGTTTAGACCTTGCAATGCATGTGGGGGTGGGGTGGGGGAGTCGTGAGAGTGCGAGGAAGATTTTAACATGCTGGGATGCTCCAGGCTGGTTTGAGTATCAGTTTAGTGTTATGAAATGATAATGCCATTAACGGACTTCTTCATTTGTCTGGGATTTGTCAGGCATATACTTTAGAGTTGGAAGCTGAAGTAGCAAAGCTTAAAGAAATTAAGCAAGAGTTGCAGAAGAAACAGGTATGATAACCATGTTTGCGAATTACTGGATTACTTTAATATTCTTGATAAGTGTTATGGTTGTGTAACCACGGGTTTTGAATGCTTCATGCAGGCTGAATTTATCGAGAAGCAGAAAAATCAGGTATAGACTTCTTTCCTGCTGTCAATATGTTGTACGAATTACGATTAAAATACTTTTTCCTACTTAATCATAGGACTAGATACAGGGATATTGTGAATTAAACAATCTAAGCAATAGAATTAGCAATTGAAATAAGGGCAGGAAGTAGATAATTTACTAATAGCAAAATGATTAAAGCTTCAAATGGCTGTACAGCTTTTCTATAAAAGTCATCAGCTGTTAAGACGTGATAACTTCGCGAAGGAAACTGTGTATGTGATTTGTTAAGCCAAGTTGTTCGTCTATAGGTCAAATGAGCTAAATGTGGTTGTTAAGTAGTCTGTTTTGTCCAATTACAGTTATTGGAAAAGATGAATGTGCCATGGGAAAATAAACTAATATGCTTGCGAAGGACAGTGACGGGACCTTGGTAGTCAGTAGAAGAGCAAATTCCCGAGTAAACACTCGGAGAATTGGTAGACAGGAGATTGAAGTGAAATAGC-TTTTCCTTCCTCTTTTTTGTTTCAACAAACAAGTTCAGAGCCTGCTCCTCGACCCTCCTCCCAGCCTGTGAATTAAAATATGTTCTAATTCACATATGTTGGTCACAGGATAGATAACTTTATGTATCGACTATAGTACAGGACAGGTGCTGTGTACCTGTACGTTATGTAAACAATGTTCTTGCATAAAGTTTC</genome_strand>
        <mrna_strand>TGCATGTGGTGAAGGTGGAAGAGGAAGGAGATCATGCACCTCTTTTGAAAAAGTTGTTGAGAGAAGGCGTAAGAGGATGATAAAGAACAGGGAGTCTGCGGCCAGATCAAGGGATCGGAAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATATACTTTAGAGTTGGAAGCTGAAGTGGCAAAGCTTAAAGAAATTAAGCAAGAGTTGCAGAAGAAACAG..............................................................................................GCTGAATTTATCGAGAAGCAGAAAAAACAG..................................................................................................................................................................................................................................................................................................................................................TTATTGGAAAAGATGAATGTGCCATGGGAAAATAAACTAATATGCTTGAGAAGGACAGTGACGGGACCTTGGTAGTCAGTAGAAGAGCAAATTCCCGAGTAAACGCTTGGAGAATTGGTAGACAGGAGTTTGAAGTGAAATATCTTTTTTCTGTGTCTTTTTTGTTTCAACAAACAAGTTCGGAACCTGCTCCTCTACCCTCCTCCCAGCCTGTGAATTGAAATATGTTCTAATTCACATCTGTTCGTCACATGATAGATAAC--T-T-TAT-G--TATAGTACAGGACAGGTGCTGTGTACCTGTACATTAAATAAACAATATTCTTGCATAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E714797" ref_strand="+" ref_description="SGN-E714797 [FB12BH02]">
      <seq>caaagcttaaagaaattaagcaagagttgcagaagaaacaggctgaatttatcgagaagcagaaaaatcagttattggaaaagatgaatgtgccatgggaaaataaactaatatgcttgcgaaggacagtgacgggaccttggtagtcagtagaagagcaaattcccgagtaaacactcggagaattggtagacaggagattgaagtgaaatagcttttccttcctcttttttgtttcaacaaacaagttcagagcctgctcctcgaccctcctcccagcctgtgaattaaaatatgttctaattcacatatgttggtcacaggatagataactttatgtatcgactatagtacaggacaggtgctgtgtacctgtacgttatgtaaacaatgttcttgcataaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="89663" stop="88227"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89363" g_stop="89323" g_length="41"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="41" r_length="41" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89322" i_stop="89229" i_length="94">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89228" g_stop="89199" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="42" r_stop="71" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89198" i_stop="88861" i_length="338">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88860" g_stop="88527" g_length="334"/>
          <reference_exon_boundary r_type="cDNA" r_start="72" r_stop="405" r_length="334" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-E714797" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>405</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E714797" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="89363" e_stop="89323"/>
          <exon e_start="89228" e_stop="89199"/>
          <exon e_start="88860" e_stop="88527"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAAAGCTTAAAGAAATTAAGCAAGAGTTGCAGAAGAAACAGGTATGATAACCATGTTTGCGAATTACTGGATTACTTTAATATTCTTGATAAGTGTTATGGTTGTGTAACCACGGGTTTTGAATGCTTCATGCAGGCTGAATTTATCGAGAAGCAGAAAAATCAGGTATAGACTTCTTTCCTGCTGTCAATATGTTGTACGAATTACGATTAAAATACTTTTTCCTACTTAATCATAGGACTAGATACAGGGATATTGTGAATTAAACAATCTAAGCAATAGAATTAGCAATTGAAATAAGGGCAGGAAGTAGATAATTTACTAATAGCAAAATGATTAAAGCTTCAAATGGCTGTACAGCTTTTCTATAAAAGTCATCAGCTGTTAAGACGTGATAACTTCGCGAAGGAAACTGTGTATGTGATTTGTTAAGCCAAGTTGTTCGTCTATAGGTCAAATGAGCTAAATGTGGTTGTTAAGTAGTCTGTTTTGTCCAATTACAGTTATTGGAAAAGATGAATGTGCCATGGGAAAATAAACTAATATGCTTGCGAAGGACAGTGACGGGACCTTGGTAGTCAGTAGAAGAGCAAATTCCCGAGTAAACACTCGGAGAATTGGTAGACAGGAGATTGAAGTGAAATAGCTTTTCCTTCCTCTTTTTTGTTTCAACAAACAAGTTCAGAGCCTGCTCCTCGACCCTCCTCCCAGCCTGTGAATTAAAATATGTTCTAATTCACATATGTTGGTCACAGGATAGATAACTTTATGTATCGACTATAGTACAGGACAGGTGCTGTGTACCTGTACGTTATGTAAACAATGTTCTTGCATAAA</genome_strand>
        <mrna_strand>CAAAGCTTAAAGAAATTAAGCAAGAGTTGCAGAAGAAACAG..............................................................................................GCTGAATTTATCGAGAAGCAGAAAAATCAG..................................................................................................................................................................................................................................................................................................................................................TTATTGGAAAAGATGAATGTGCCATGGGAAAATAAACTAATATGCTTGCGAAGGACAGTGACGGGACCTTGGTAGTCAGTAGAAGAGCAAATTCCCGAGTAAACACTCGGAGAATTGGTAGACAGGAGATTGAAGTGAAATAGCTTTTCCTTCCTCTTTTTTGTTTCAACAAACAAGTTCAGAGCCTGCTCCTCGACCCTCCTCCCAGCCTGTGAATTAAAATATGTTCTAATTCACATATGTTGGTCACAGGATAGATAACTTTATGTATCGACTATAGTACAGGACAGGTGCTGTGTACCTGTACGTTATGTAAACAATGTTCTTGCATAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E418682" ref_strand="-" ref_description="SGN-E418682 [STM-28-G3]">
      <seq>gtggcaaagcttaaagaaattaagcaagagttgcagaagaaacaggctgaatttatcgagaagcagaaaaaacagttattggaaaagatgaatttgccatgggaaaataaactaatatgcttgagaaggacagtgacgggaccttggtagtcagtagaagagcaaattcccgagtaaacgcttggagaattggtagacaggagtttgaagtgaaatatcttttttctgtctttttttgtttcaacaaacaagttcggagcctgctcctctaccctcctcccagcctgtgaattgaaatatgttctaattcacatctgttcgtcacatgatagataactttatgtatagtacaggacaggtgctgtgtacctgtacattatgtaaacaatattctt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="89667" stop="88234"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="89367" g_stop="89323" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="0.978"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="89322" i_stop="89229" i_length="94">
            <donor d_prob="0.998" d_score="0.98"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89228" g_stop="89199" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="75" r_length="30" r_score="0.967"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89198" i_stop="88861" i_length="338">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.853" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="88860" g_stop="88534" g_length="327"/>
          <reference_exon_boundary r_type="cDNA" r_start="76" r_stop="395" r_length="320" r_score="0.917"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-E418682" ref_strand="-">
        <total_alignment_score>0.917</total_alignment_score>
        <cumulative_length_of_scored_exons>402</cumulative_length_of_scored_exons>
        <coverage percentage="1.018" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E418682" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="89367" e_stop="89323"/>
          <exon e_start="89228" e_stop="89199"/>
          <exon e_start="88860" e_stop="88534"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAGCAAAGCTTAAAGAAATTAAGCAAGAGTTGCAGAAGAAACAGGTATGATAACCATGTTTGCGAATTACTGGATTACTTTAATATTCTTGATAAGTGTTATGGTTGTGTAACCACGGGTTTTGAATGCTTCATGCAGGCTGAATTTATCGAGAAGCAGAAAAATCAGGTATAGACTTCTTTCCTGCTGTCAATATGTTGTACGAATTACGATTAAAATACTTTTTCCTACTTAATCATAGGACTAGATACAGGGATATTGTGAATTAAACAATCTAAGCAATAGAATTAGCAATTGAAATAAGGGCAGGAAGTAGATAATTTACTAATAGCAAAATGATTAAAGCTTCAAATGGCTGTACAGCTTTTCTATAAAAGTCATCAGCTGTTAAGACGTGATAACTTCGCGAAGGAAACTGTGTATGTGATTTGTTAAGCCAAGTTGTTCGTCTATAGGTCAAATGAGCTAAATGTGGTTGTTAAGTAGTCTGTTTTGTCCAATTACAGTTATTGGAAAAGATGAATGTGCCATGGGAAAATAAACTAATATGCTTGCGAAGGACAGTGACGGGACCTTGGTAGTCAGTAGAAGAGCAAATTCCCGAGTAAACACTCGGAGAATTGGTAGACAGGAGATTGAAGTGAAATAGC-TTTTCCTTCCTCTTTTTTGTTTCAACAAACAAGTTCAGAGCCTGCTCCTCGACCCTCCTCCCAGCCTGTGAATTAAAATATGTTCTAATTCACATATGTTGGTCACAGGATAGATAACTTTATGTATCGACTATAGTACAGGACAGGTGCTGTGTACCTGTACGTTATGTAAACAATGTTCTT</genome_strand>
        <mrna_strand>GTGGCAAAGCTTAAAGAAATTAAGCAAGAGTTGCAGAAGAAACAG..............................................................................................GCTGAATTTATCGAGAAGCAGAAAAAACAG..................................................................................................................................................................................................................................................................................................................................................TTATTGGAAAAGATGAATTTGCCATGGGAAAATAAACTAATATGCTTGAGAAGGACAGTGACGGGACCTTGGTAGTCAGTAGAAGAGCAAATTCCCGAGTAAACGCTTGGAGAATTGGTAGACAGGAGTTTGAAGTGAAATATCTTTTTTCTGTCT-TTTTTTGTTTCAACAAACAAGTTCGGAGCCTGCTCCTCTACCCTCCTCCCAGCCTGTGAATTGAAATATGTTCTAATTCACATCTGTTCGTCACATGATAGATAAC--T-T-TAT-G--TATAGTACAGGACAGGTGCTGTGTACCTGTACATTATGTAAACAATATTCTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E274010" ref_strand="+" ref_description="SGN-E274010 [cLEN-8-K8]">
      <seq>agggagtctgcggccagatcaagggatcggaagcaggcatatactttagagttggaagctgaagtagcaaagcttaaagaaattaagcaagagttgcagaagaaacaggctgaatttatcgagaagcagaaaaatcagttattggaaaagatgaatgtgccatgggaaaataaactaatatgcttgcgaaggacagtgacgggaccttggtagtcagtagaagagcaaattcccgagtaaacactcggagaattggtagacaggagattgaagtgaaatagcttttccttcctcttttttgtttcaacaaacaagttcagagcctgctcctcgaccctcctcccagcctgtgaattaaaatatgttctaattcacatatgttggtcacaggatagataactntatgtatcgactatagtacaggacaggtgctgtgtacctgtacgttatgtaaaca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="90596" stop="88242"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90296" g_stop="90261" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90260" i_stop="89395" i_length="866">
            <donor d_prob="0.999" d_score="0.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="89394" g_stop="89323" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="108" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="89322" i_stop="89229" i_length="94">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89228" g_stop="89199" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="109" r_stop="138" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89198" i_stop="88861" i_length="338">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88860" g_stop="88542" g_length="319"/>
          <reference_exon_boundary r_type="cDNA" r_start="139" r_stop="457" r_length="319" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-E274010" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>457</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274010" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90296" e_stop="90261"/>
          <exon e_start="89394" e_stop="89323"/>
          <exon e_start="89228" e_stop="89199"/>
          <exon e_start="88860" e_stop="88542"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGAGTCTGCGGCCAGATCAAGGGATCGGAAGCAGGTGAATTTATATTTTGAATTTGGCTTATGAGTTAATTCTTTTGTTTCTGATTCTTGAGGCCTGTGCCTGTTTTTTCTGGTTTCCTTTGTCTTTTAAAATCTGTCACTCTGGTCAAGGATTCGATACAATTCAACAGAATCTAAGAAATGATCAAAATAGAAATGATTTTCGAATTTGATTCTATAAAAATTCCTGTTTCATTTTTGAATGAAGTTAGACGATAGTCCAGGTGCACTTCTTACTTCTATCTATACATTTCCAGATATCATTGCTTCGATACGGTCCCGAATCCGTTTCACTTCATTCTTCCCCGAGCGGGAATACGTCGCTTACAATATTATTAAAGAAAGGGCGCTTATCAGCTCTACAACTTTTAGTGCCATATCTTCCAAAACCAAGTTGTGTACCGTCCGGTTTGCAACCCCTACTACATCTGCCTTTACAATATTTACTATATTTTGTACATTTCGGATATAGCATGTCCCCCCTTTTTTTGACTATATGAAATCTAATTCATTCTCCCATCGAGAGGATCAAAAGCGCGATAAAGAAAGATAGATTCATAGTGGGGTGATGTGCCTGCGCTAGGTATTTTCTTTCTTCTGGCCGTAGGTGTGATCAAACTACTCATTCATTCAACTCAATGACACAAATGAATTAGTAGTTGGCAGAGTTTCTCACACCTCCTTTTTCTCCTTACTTTAGTTTAGACCTTGCAATGCATGTGGGGGTGGGGTGGGGGAGTCGTGAGAGTGCGAGGAAGATTTTAACATGCTGGGATGCTCCAGGCTGGTTTGAGTATCAGTTTAGTGTTATGAAATGATAATGCCATTAACGGACTTCTTCATTTGTCTGGGATTTGTCAGGCATATACTTTAGAGTTGGAAGCTGAAGTAGCAAAGCTTAAAGAAATTAAGCAAGAGTTGCAGAAGAAACAGGTATGATAACCATGTTTGCGAATTACTGGATTACTTTAATATTCTTGATAAGTGTTATGGTTGTGTAACCACGGGTTTTGAATGCTTCATGCAGGCTGAATTTATCGAGAAGCAGAAAAATCAGGTATAGACTTCTTTCCTGCTGTCAATATGTTGTACGAATTACGATTAAAATACTTTTTCCTACTTAATCATAGGACTAGATACAGGGATATTGTGAATTAAACAATCTAAGCAATAGAATTAGCAATTGAAATAAGGGCAGGAAGTAGATAATTTACTAATAGCAAAATGATTAAAGCTTCAAATGGCTGTACAGCTTTTCTATAAAAGTCATCAGCTGTTAAGACGTGATAACTTCGCGAAGGAAACTGTGTATGTGATTTGTTAAGCCAAGTTGTTCGTCTATAGGTCAAATGAGCTAAATGTGGTTGTTAAGTAGTCTGTTTTGTCCAATTACAGTTATTGGAAAAGATGAATGTGCCATGGGAAAATAAACTAATATGCTTGCGAAGGACAGTGACGGGACCTTGGTAGTCAGTAGAAGAGCAAATTCCCGAGTAAACACTCGGAGAATTGGTAGACAGGAGATTGAAGTGAAATAGCTTTTCCTTCCTCTTTTTTGTTTCAACAAACAAGTTCAGAGCCTGCTCCTCGACCCTCCTCCCAGCCTGTGAATTAAAATATGTTCTAATTCACATATGTTGGTCACAGGATAGATAACTTTATGTATCGACTATAGTACAGGACAGGTGCTGTGTACCTGTACGTTATGTAAACA</genome_strand>
        <mrna_strand>AGGGAGTCTGCGGCCAGATCAAGGGATCGGAAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATATACTTTAGAGTTGGAAGCTGAAGTAGCAAAGCTTAAAGAAATTAAGCAAGAGTTGCAGAAGAAACAG..............................................................................................GCTGAATTTATCGAGAAGCAGAAAAATCAG..................................................................................................................................................................................................................................................................................................................................................TTATTGGAAAAGATGAATGTGCCATGGGAAAATAAACTAATATGCTTGCGAAGGACAGTGACGGGACCTTGGTAGTCAGTAGAAGAGCAAATTCCCGAGTAAACACTCGGAGAATTGGTAGACAGGAGATTGAAGTGAAATAGCTTTTCCTTCCTCTTTTTTGTTTCAACAAACAAGTTCAGAGCCTGCTCCTCGACCCTCCTCCCAGCCTGTGAATTAAAATATGTTCTAATTCACATATGTTGGTCACAGGATAGATAACTNTATGTATCGACTATAGTACAGGACAGGTGCTGTGTACCTGTACGTTATGTAAACA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E365899" ref_strand="+" ref_description="SGN-E365899 [cLPT-11-O16]">
      <seq>tcaaactttgggcagagggaatctaccttgggagaaatgacattagaagagtttttggttagagcatgggccgcgcaagaagatatgcaaccagctggatactcaaatgatgttacatttgctagtggtttcactcaacctagtagtagtgtgaccatagcatttcaacaagcaacccaaaaccctggacatcaaattgcagggaataacatatttaatgtggtcagtaccaccacgtcttcaccacagcagcccctttttgccaaacaaacaactgtggaatttgcatcacccatgcaattagggagcccagggaaaaggcttcccatgtctaatccgtctgcaaatactagtagtgtcatgcagggtggtgttatgaccatgccagtaaaaggagtatcccctggaaatcttgatacatcttcgctgtcaccttcaccttatgcatgtggtgaaggtggaagaggaaggagatcatgcacctcttttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="91127" stop="90037"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90827" g_stop="90337" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="491" r_length="491" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-E365899" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>491</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E365899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90827" e_stop="90337"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAACTTTGGGCAGCGGGAATCTACCTTGGGAGAAATGACATTAGAAGAGTTTTTGGTTAGAGCAGGGGCCGTGCAAGAAGATATGCAACCAGCTGGATACTCAAATGATGTTACATTTGCTAGTGGTTTCACTCAACCTAGTTGTAGTGTGACCATAGCATTTCAACAAGCAACCCAAAACCCTGGACATCAAATTGCAGCGAATAACATATTTAATGTGGTCAGTACCACCACGTCTTCACCACAGCAGCCCCTTTTTCCCAAACAAACAACTGTGGAATTTGCATCACCCATGCAATTAGGGAGCCCAGGGAAAAGGCTTCCCATGTCTAATCCGTCTGCAAATACTAGTAGTGTCATGCAGGGTGGTGTTATGACCATGCCAGTAAAAGGAGTATCCCCTGGAAATCTTGATACATCTTCTCTTTCACCTTCACCTTATGCATGTGGTGAAGGTGGAAGAGGAAGGAGATCATGCACCTCTTTTGA</genome_strand>
        <mrna_strand>TCAAACTTTGGGCAGAGGGAATCTACCTTGGGAGAAATGACATTAGAAGAGTTTTTGGTTAGAGCATGGGCCGCGCAAGAAGATATGCAACCAGCTGGATACTCAAATGATGTTACATTTGCTAGTGGTTTCACTCAACCTAGTAGTAGTGTGACCATAGCATTTCAACAAGCAACCCAAAACCCTGGACATCAAATTGCAGGGAATAACATATTTAATGTGGTCAGTACCACCACGTCTTCACCACAGCAGCCCCTTTTTGCCAAACAAACAACTGTGGAATTTGCATCACCCATGCAATTAGGGAGCCCAGGGAAAAGGCTTCCCATGTCTAATCCGTCTGCAAATACTAGTAGTGTCATGCAGGGTGGTGTTATGACCATGCCAGTAAAAGGAGTATCCCCTGGAAATCTTGATACATCTTCGCTGTCACCTTCACCTTATGCATGTGGTGAAGGTGGAAGAGGAAGGAGATCATGCACCTCTTTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E576591" ref_strand="+" ref_description="SGN-E576591 [59834]">
      <seq>ccaaaacggattttccttgtcataaccatgggatcttacctgaacttcaagaactttgctgacacgtcacaaccagagagcagtgggaataatagtaatctttcattggcccgacaatcttccatatactcgtttacctttgatgagctgcaaagtgcatgtggacttggaaaagattttggatcgatgaatatggatgacctcttgaagaacattgaagagtctcaagcgtttccatcttctgctgctgcagggggtaatttgcagagacagggttctttgacactgcctaggacacttagtcagagaactgtagatgaagtatggaaagactttcagaaagagagtgttattgctaatgatgcaagtgggactggaggatcaaactttgggcagagggaatctactttgggagaaatgacattagaagagtttttggttagagcaggggcggtgcgagaagatatgcaaccagctggatactcaaatgatgttacattcgctggtggtttcactcaacctagtagtagtgtgaccatagcatttcaacaagcaacccaaaaccctggacatcaaattgcagggaatagcatattcaatgtggtcagtaccaccacgtcttcaacacagcagcctctttttcccaaacaaacaactgtggaatttgcatcacccttgcaattaggagggagcccagggacaaggctcccatgtctaatcccgctctgcaaatactagtagtgtcattgcaggctggtggttttgaccatgccagtaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="91504" stop="90136"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91199" g_stop="90436" g_length="764"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="779" r_length="770" r_score="0.935"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-E576591" ref_strand="+">
        <total_alignment_score>0.935</total_alignment_score>
        <cumulative_length_of_scored_exons>764</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E576591" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91199" e_stop="90436"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGTTTGTCGTAACCATGGGATCTTACCTGAACTTCAAGAACTTTGCTGACACATCACAACCAGAGAGCAGTGGGAATAATAGTAATTCTTTTTTGGCCCAACAATCTTCCATATACTCGTTTACCTTTGATGAGCTGCAAAATACATGTGGACTTGGAAAAGATTTTGGGTCGATGAATATGGATGACCTCTTGAAGAACATTGAAGAGTCTCAAGCGTTGTCATCTTCTGCTGCTTTAGGGGGTAATTTGCAGAGACAGGGTTCTTTGACACTGCCTAGGACACTTAGTCAGAAAACTGTAGATGAAGTATGGAGAGACTTTCAGAAAGAGAGTGTTGTTGCTAATGATGCAAGTGGGACTGGAGGATCAAACTTTGGGCAGCGGGAATCTACCTTGGGAGAAATGACATTAGAAGAGTTTTTGGTTAGAGCAGGGGCCGTGCAAGAAGATATGCAACCAGCTGGATACTCAAATGATGTTACATTTGCTAGTGGTTTCACTCAACCTAGTTGTAGTGTGACCATAGCATTTCAACAAGCAACCCAAAACCCTGGACATCAAATTGCAGCGAATAACATATTTAATGTGGTCAGTACCACCACGTCTTCACCACAGCAGCCCCTTTTTCCCAAACAAACAACTGTGGAATTTGCATCACCCATGCAATT---AGGGAGCCCAGGGAAAAGGCTTCCCATGTCTAAT-CCG-TCTGCAAATACTAGTAGTGTCA-TGCAGGGTGGT-GTTATGACCATGCCAGTAAA</genome_strand>
        <mrna_strand>ATTTTCCTTGTCATAACCATGGGATCTTACCTGAACTTCAAGAACTTTGCTGACACGTCACAACCAGAGAGCAGTGGGAATAATAGTAATCTTTCATTGGCCCGACAATCTTCCATATACTCGTTTACCTTTGATGAGCTGCAAAGTGCATGTGGACTTGGAAAAGATTTTGGATCGATGAATATGGATGACCTCTTGAAGAACATTGAAGAGTCTCAAGCGTTTCCATCTTCTGCTGCTGCAGGGGGTAATTTGCAGAGACAGGGTTCTTTGACACTGCCTAGGACACTTAGTCAGAGAACTGTAGATGAAGTATGGAAAGACTTTCAGAAAGAGAGTGTTATTGCTAATGATGCAAGTGGGACTGGAGGATCAAACTTTGGGCAGAGGGAATCTACTTTGGGAGAAATGACATTAGAAGAGTTTTTGGTTAGAGCAGGGGCGGTGCGAGAAGATATGCAACCAGCTGGATACTCAAATGATGTTACATTCGCTGGTGGTTTCACTCAACCTAGTAGTAGTGTGACCATAGCATTTCAACAAGCAACCCAAAACCCTGGACATCAAATTGCAGGGAATAGCATATTCAATGTGGTCAGTACCACCACGTCTTCAACACAGCAGCCTCTTTTTCCCAAACAAACAACTGTGGAATTTGCATCACCCTTGCAATTAGGAGGGAGCCCAGGGACAAGGC-TCCCATGTCTAATCCCGCTCTGCAAATACTAGTAGTGTCATTGCAGGCTGGTGGTTTTGACCATGCCAGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E479830" ref_strand="+" ref_description="SGN-E479830 [cSTD-11-F3]">
      <seq>cacgcttactcttttgccccttgccaaactcgtacctgccaaaacggattttccttgtcataaccatgggatcttacctgaacttcaagaactttgctgacaccgtcacaaccagagagcagtgggaataatagtaatctttcattggcccgacaatcttccatatacctcgtttacctttgatgaagctgcaaagtgcatgtggacttggaaaagattttggatcgatgaatatggatgacctcttgaagaacattgaagagtctcaagcgtttccatcttctgctgctgcagggggtaatttgcagaaacagggttctttgacactgcctaggacacttagtcagaaaactgtagatgaagtatggaaagactttcagaaagaaagtgttattgctaatgatgcaagtgggactggaggatcaaactttgggcagagggaatctactttgggagaaatgacattagaagaatttttggttagagcaggggcggtgcgagaagatatgcaaccagctggatactcaaatgatgttacattcgctgggtggtttcactcaacctagtangtagtgtgaccatagcatttcaacaagcaacccaaaaccctggacatcaaattgcanggaatagcatattcaatgtnggtcagtaccaccacgtcttcaacacagcagcctctttttcccaaacaacaaactgtggaatttgcatcacccttgcaatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="92883" stop="90225"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92574" g_stop="92545" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="18" r_stop="47" r_length="30" r_score="0.900"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92544" i_stop="91200" i_length="1345">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.845" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91199" g_stop="90525" g_length="675"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="728" r_length="681" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-E479830" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>705</cumulative_length_of_scored_exons>
        <coverage percentage="0.968" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E479830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92574" e_stop="92545"/>
          <exon e_start="91199" e_stop="90525"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTGCAAAACTTGTACCTGCCAAAACGGGTAAACTTATTTTCTCTCTTCTCCCATTTTTACATATTAATTTTTTTCTCTTGATTTTTCACATATTATTATCTCATGTCCTAATCAAACTCGAAATGAAAAATCTTCACTCTTTTCTTGATTTTTTTTTGATGTTTAATTTGTTTTCTCAATTACAAATATGTTATTACTGATCTGACATTGTTTTAATTTTTTCGAAATGATTTATCAAAATGAGATAGTTGAAGGGTAGTTGATTGATTAATTAATTTGATGATGTTTTTTGGCACTTGAAATTATCTCTTATAGATCCATGCTTTTTTTTGTTTATGAATTCTATGATTCTGTATAGTGGGCAGTACTCGATGAATGAGTTCGATACTTAATTAGACAGTTGAATGAAGTCTTGATGTTAGTATAAAGTTTTAGATCCAAATATGTTGATGTTGAATGAAATTATGAGCTCTGAACAAAGTTAATAGATCCACTGTGTCGACAGTTTTGAGTTTTTATTATTTTGTGGAATTTACTTGAATAGTTGACTCTGGTTGAGTAGTTGATAGTTGAATGAAGTTTATCTTAGCTTCTGGGTTTTGTATTTTGGATCCAATCTTAACATAAGTGTTTTGCATTTTGAATGAGTTTTTGGACTTGAAATGAGTTTGAAGCAAAGATGGATCTACGGTGTAGCGTATCCCCTCAACAATTAGGTATTTTTTTTAAAAGAAAAATTATGTGTATATATAGATTGTGGATCTCCGAACATAAGATTAAACATTGGCTCAGTGGTTGAGGAATTCAAAATTCGGTTAGAGGTTTCAAGTTTGAAGCTCAAACACTACATTTTTATTTTTCGAATCCCCTTAGTCAAAATCATGGATCCGCCACGGGTTTGAAGAATGTTAATTGGTGCTAATTTTTTTAAATCTAAATGTGTACAAAAGGTGGTGGACTGAATCAGGTCAAACCATTAAATATAGATCTAGTTTGTATTTCATTCTCTCCATCATTGAGGTATTATAATCTGTGTTTAACCGAGATCTGCCTAATCATGATATTTCAGTTTTTCTGAGCTGTAATGAGCAAGATGTTAAGTGTTGTATTTTTCTTTACTGTTCTAATGTCCTTAAAGTGATCATCTTCAAGTCGGCAGTGAAGATTATATGTTTGAGCTTGTACGTAATCACCAATGTTGTAGCATTTTGTTAGGAAATGATTAAAATTCTTTGGAGGTGGTATACAATATTTGTTTATTGGTGAACATTCTATTATATGTTGTTGGACTACACCGAAATATAAAAATTGATTCCCGTGGTCGACTTCTACTGTTGTTTCTTACTGTCTTACTAATGAACTTTTGGATCAGATTTTGTTTGTCGTAACCATGGGATCTTACCTGAACTTCAAGAACTTTGCTGACAC-ATCACAACCAGAGAGCAGTGGGAATAATAGTAATTCTTTTTTGGCCCAACAATCTTCCATATA-CTCGTTTACCTTTGATG-AGCTGCAAAATACATGTGGACTTGGAAAAGATTTTGGGTCGATGAATATGGATGACCTCTTGAAGAACATTGAAGAGTCTCAAGCGTTGTCATCTTCTGCTGCTTTAGGGGGTAATTTGCAGAGACAGGGTTCTTTGACACTGCCTAGGACACTTAGTCAGAAAACTGTAGATGAAGTATGGAGAGACTTTCAGAAAGAGAGTGTTGTTGCTAATGATGCAAGTGGGACTGGAGGATCAAACTTTGGGCAGCGGGAATCTACCTTGGGAGAAATGACATTAGAAGAGTTTTTGGTTAGAGCAGGGGCCGTGCAAGAAGATATGCAACCAGCTGGATACTCAAATGATGTTACATTTGCT-AGTGGTTTCACTCAACCTAGT-TGTAGTGTGACCATAGCATTTCAACAAGCAACCCAAAACCCTGGACATCAAATTGCAGCGAATAACATATTTAATGT-GGTCAGTACCACCACGTCTTCACCACAGCAGCCCCTTTTTCCCAAACAAACAACTGTGGAATTTGCATCACCCATGCAATTA</genome_strand>
        <mrna_strand>CCCTTGCCAAACTCGTACCTGCCAAAACGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCTTGTCATAACCATGGGATCTTACCTGAACTTCAAGAACTTTGCTGACACCGTCACAACCAGAGAGCAGTGGGAATAATAGTAATCTTTCATTGGCCCGACAATCTTCCATATACCTCGTTTACCTTTGATGAAGCTGCAAAGTGCATGTGGACTTGGAAAAGATTTTGGATCGATGAATATGGATGACCTCTTGAAGAACATTGAAGAGTCTCAAGCGTTTCCATCTTCTGCTGCTGCAGGGGGTAATTTGCAGAAACAGGGTTCTTTGACACTGCCTAGGACACTTAGTCAGAAAACTGTAGATGAAGTATGGAAAGACTTTCAGAAAGAAAGTGTTATTGCTAATGATGCAAGTGGGACTGGAGGATCAAACTTTGGGCAGAGGGAATCTACTTTGGGAGAAATGACATTAGAAGAATTTTTGGTTAGAGCAGGGGCGGTGCGAGAAGATATGCAACCAGCTGGATACTCAAATGATGTTACATTCGCTGGGTGGTTTCACTCAACCTAGTANGTAGTGTGACCATAGCATTTCAACAAGCAACCCAAAACCCTGGACATCAAATTGCANGGAATAGCATATTCAATGTNGGTCAGTACCACCACGTCTTCAACACAGCAGCCTCTTTTTCCCAAACAACAAACTGTGGAATTTGCATCACCCTTGCAATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E574717" ref_strand="+" ref_description="SGN-E574717 [34227]">
      <seq>acggattttccttgtcataaccatgggatcttacctgaacatcaagaactttgctgacacatcacaaccagagagcagtgggaataatagtaatttttcattggcccgacaatcttccatatactcgtttacctttgatgagctgcaaagtacatgtggacttggaaaagattttggatcgatgaatatggatgacctcttgaagaacattgaagagtctcaagcgtttccatcttctgctgctgcagggggtaatttgcagagacagggttctttgacactgcctaggacacttagtcagagaactgtagatgaagtatggaaagactttcagaaagagagtgttattgctaatgatgtaagtgggactggaggatcaaactttgggcagagggaatctactttgggagaaatgacattagaagagttttggttagagcaggggcggtgcgagaagatatgcaaccagctggatactcaaatgatgttacattcgctagtggtttcactcaacctagtagtagtgtgaccatagcatttcaaccaagcaacccaaaaccctggacatcaattgcaggcaaataccatattcaatgtggtcagtaccaccacgtcttcaacacagcagctctttttcccaaacaaacaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="91502" stop="90254"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91199" g_stop="90554" g_length="646"/>
          <reference_exon_boundary r_type="cDNA" r_start="5" r_stop="649" r_length="645" r_score="0.944"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-E574717" ref_strand="+">
        <total_alignment_score>0.944</total_alignment_score>
        <cumulative_length_of_scored_exons>646</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E574717" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91199" e_stop="90554"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGTTTGTCGTAACCATGGGATCTTACCTGAACTTCAAGAACTTTGCTGACACATCACAACCAGAGAGCAGTGGGAATAATAGTAATTCTTTTTTGGCCCAACAATCTTCCATATACTCGTTTACCTTTGATGAGCTGCAAAATACATGTGGACTTGGAAAAGATTTTGGGTCGATGAATATGGATGACCTCTTGAAGAACATTGAAGAGTCTCAAGCGTTGTCATCTTCTGCTGCTTTAGGGGGTAATTTGCAGAGACAGGGTTCTTTGACACTGCCTAGGACACTTAGTCAGAAAACTGTAGATGAAGTATGGAGAGACTTTCAGAAAGAGAGTGTTGTTGCTAATGATGCAAGTGGGACTGGAGGATCAAACTTTGGGCAGCGGGAATCTACCTTGGGAGAAATGACATTAGAAGAGTTTTTGGTTAGAGCAGGGGCCGTGCAAGAAGATATGCAACCAGCTGGATACTCAAATGATGTTACATTTGCTAGTGGTTTCACTCAACCTAGTTGTAGTGTGACCATAGCATTTCAA-CAAGCAACCCAAAACCCTGGACATCAAATTGCA-GCGAATAACATATTTAATGTGGTCAGTACCACCACGTCTTCACCACAGCAGCCCCTTTTTCCCAAACAAACAA</genome_strand>
        <mrna_strand>ATTTTCCTTGTCATAACCATGGGATCTTACCTGAACATCAAGAACTTTGCTGACACATCACAACCAGAGAGCAGTGGGAATAATAGTAATTTTTCATTGGCCCGACAATCTTCCATATACTCGTTTACCTTTGATGAGCTGCAAAGTACATGTGGACTTGGAAAAGATTTTGGATCGATGAATATGGATGACCTCTTGAAGAACATTGAAGAGTCTCAAGCGTTTCCATCTTCTGCTGCTGCAGGGGGTAATTTGCAGAGACAGGGTTCTTTGACACTGCCTAGGACACTTAGTCAGAGAACTGTAGATGAAGTATGGAAAGACTTTCAGAAAGAGAGTGTTATTGCTAATGATGTAAGTGGGACTGGAGGATCAAACTTTGGGCAGAGGGAATCTACTTTGGGAGAAATGACATTAGAAGAG-TTTTGGTTAGAGCAGGGGCGGTGCGAGAAGATATGCAACCAGCTGGATACTCAAATGATGTTACATTCGCTAGTGGTTTCACTCAACCTAGTAGTAGTGTGACCATAGCATTTCAACCAAGCAACCCAAAACCCTGGACATC-AATTGCAGGCAAATACCATATTCAATGTGGTCAGTACCACCACGTCTTCAACACAGCAG-CTCTTTTTCCCAAACAAACAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E487197" ref_strand="+" ref_description="SGN-E487197 [cSTE-24-F8]">
      <seq>ctgccaaaacggattttccttgtcataaccatgggatcttacctgaacttcaagaactttgctgacacgtcacaaccagagagcagtgggaataatagtaatctttcattggcccgacaatcttccatatactcgtttacctttgatgagctgcaaagtgcatgtggacttggaaaagattttggatcgatgaatatggatgacctcttgaagaacattgaagagtctcaagcgtttccatcttctgctgctgcagggggtaatttgcagagacagggttctttgacactgcctaggacacttagtcagagaactgtagatgaagtatggaaagactttcagaaagagagtgttattgctaatgatgcaagtgggactggaggatcaaactttgggcagagggaatctactttgggagaaatgacattagaagagtttttggttagagcaggggcggtgcgagaagatatgcaaccagctggatactcaaatgatgttacattcgctggtggtttcactcaacctagtagtagtgtgaccatagcatttcaacaagcaacccaaaaccctggacatcaaattgcagggaatagcatattcaatgtggtcagtaccaccacgtctttcacacagcagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="91504" stop="90275"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91199" g_stop="90575" g_length="625"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="637" r_length="625" r_score="0.949"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-E487197" ref_strand="+">
        <total_alignment_score>0.949</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="0.981" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E487197" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91199" e_stop="90575"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTGTTTGTCGTAACCATGGGATCTTACCTGAACTTCAAGAACTTTGCTGACACATCACAACCAGAGAGCAGTGGGAATAATAGTAATTCTTTTTTGGCCCAACAATCTTCCATATACTCGTTTACCTTTGATGAGCTGCAAAATACATGTGGACTTGGAAAAGATTTTGGGTCGATGAATATGGATGACCTCTTGAAGAACATTGAAGAGTCTCAAGCGTTGTCATCTTCTGCTGCTTTAGGGGGTAATTTGCAGAGACAGGGTTCTTTGACACTGCCTAGGACACTTAGTCAGAAAACTGTAGATGAAGTATGGAGAGACTTTCAGAAAGAGAGTGTTGTTGCTAATGATGCAAGTGGGACTGGAGGATCAAACTTTGGGCAGCGGGAATCTACCTTGGGAGAAATGACATTAGAAGAGTTTTTGGTTAGAGCAGGGGCCGTGCAAGAAGATATGCAACCAGCTGGATACTCAAATGATGTTACATTTGCTAGTGGTTTCACTCAACCTAGTTGTAGTGTGACCATAGCATTTCAACAAGCAACCCAAAACCCTGGACATCAAATTGCAGCGAATAACATATTTAATGTGGTCAGTACCACCACGTCTTCACCACAGCAGC</genome_strand>
        <mrna_strand>ATTTTCCTTGTCATAACCATGGGATCTTACCTGAACTTCAAGAACTTTGCTGACACGTCACAACCAGAGAGCAGTGGGAATAATAGTAATCTTTCATTGGCCCGACAATCTTCCATATACTCGTTTACCTTTGATGAGCTGCAAAGTGCATGTGGACTTGGAAAAGATTTTGGATCGATGAATATGGATGACCTCTTGAAGAACATTGAAGAGTCTCAAGCGTTTCCATCTTCTGCTGCTGCAGGGGGTAATTTGCAGAGACAGGGTTCTTTGACACTGCCTAGGACACTTAGTCAGAGAACTGTAGATGAAGTATGGAAAGACTTTCAGAAAGAGAGTGTTATTGCTAATGATGCAAGTGGGACTGGAGGATCAAACTTTGGGCAGAGGGAATCTACTTTGGGAGAAATGACATTAGAAGAGTTTTTGGTTAGAGCAGGGGCGGTGCGAGAAGATATGCAACCAGCTGGATACTCAAATGATGTTACATTCGCTGGTGGTTTCACTCAACCTAGTAGTAGTGTGACCATAGCATTTCAACAAGCAACCCAAAACCCTGGACATCAAATTGCAGGGAATAGCATATTCAATGTGGTCAGTACCACCACGTCTTTCACACAGCAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E614250" ref_strand="+" ref_description="SGN-E614250 [64034]">
      <seq>ccttgaccaggcgaagaaataggaagcaaccacgcttactcttttgctccttgccaaactcgtacctgccaaaacggattttccttgtcataaccatgggatcttcacctgaacttcaagaactttgctgacacgtcacaaccagagagcagtgggaataatagtaatctttcattggcccgacaatcttccatatactcgtttacctttgatgagctgcaaagtgcatgtggacttggtcaaagattttggatcgatgaatatggatgacctcttgaagaacattgaagagtctcaagcgtttccatcttctgctgctgcagggggtaatttgcagagacagggttctttgacactgcctaggacacttagtcagagaactgtagatgaagtatggaaagactttcagaaagagagtgttattgctaatgatgcaagtgggactggaggatcaaactttgggcagagggaatctactttgggagaaatgacattagaagagtcttggttagagcaggcgcggtgcgagaagatatgcaaccagctggatactcaaatgatgttacattcgctggtggtttcactcaagctagtagtagtgtgaccatagcatttcaacaagcaaccaaaaccctggacatcaaattgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="92883" stop="90327"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92574" g_stop="92545" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="77" r_length="30" r_score="0.933"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92544" i_stop="91200" i_length="1345">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.845" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91199" g_stop="90627" g_length="573"/>
          <reference_exon_boundary r_type="cDNA" r_start="78" r_stop="650" r_length="573" r_score="0.937"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-E614250" ref_strand="+">
        <total_alignment_score>0.937</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.928" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E614250" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92574" e_stop="92545"/>
          <exon e_start="91199" e_stop="90627"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCCTTGCAAAACTTGTACCTGCCAAAACGGGTAAACTTATTTTCTCTCTTCTCCCATTTTTACATATTAATTTTTTTCTCTTGATTTTTCACATATTATTATCTCATGTCCTAATCAAACTCGAAATGAAAAATCTTCACTCTTTTCTTGATTTTTTTTTGATGTTTAATTTGTTTTCTCAATTACAAATATGTTATTACTGATCTGACATTGTTTTAATTTTTTCGAAATGATTTATCAAAATGAGATAGTTGAAGGGTAGTTGATTGATTAATTAATTTGATGATGTTTTTTGGCACTTGAAATTATCTCTTATAGATCCATGCTTTTTTTTGTTTATGAATTCTATGATTCTGTATAGTGGGCAGTACTCGATGAATGAGTTCGATACTTAATTAGACAGTTGAATGAAGTCTTGATGTTAGTATAAAGTTTTAGATCCAAATATGTTGATGTTGAATGAAATTATGAGCTCTGAACAAAGTTAATAGATCCACTGTGTCGACAGTTTTGAGTTTTTATTATTTTGTGGAATTTACTTGAATAGTTGACTCTGGTTGAGTAGTTGATAGTTGAATGAAGTTTATCTTAGCTTCTGGGTTTTGTATTTTGGATCCAATCTTAACATAAGTGTTTTGCATTTTGAATGAGTTTTTGGACTTGAAATGAGTTTGAAGCAAAGATGGATCTACGGTGTAGCGTATCCCCTCAACAATTAGGTATTTTTTTTAAAAGAAAAATTATGTGTATATATAGATTGTGGATCTCCGAACATAAGATTAAACATTGGCTCAGTGGTTGAGGAATTCAAAATTCGGTTAGAGGTTTCAAGTTTGAAGCTCAAACACTACATTTTTATTTTTCGAATCCCCTTAGTCAAAATCATGGATCCGCCACGGGTTTGAAGAATGTTAATTGGTGCTAATTTTTTTAAATCTAAATGTGTACAAAAGGTGGTGGACTGAATCAGGTCAAACCATTAAATATAGATCTAGTTTGTATTTCATTCTCTCCATCATTGAGGTATTATAATCTGTGTTTAACCGAGATCTGCCTAATCATGATATTTCAGTTTTTCTGAGCTGTAATGAGCAAGATGTTAAGTGTTGTATTTTTCTTTACTGTTCTAATGTCCTTAAAGTGATCATCTTCAAGTCGGCAGTGAAGATTATATGTTTGAGCTTGTACGTAATCACCAATGTTGTAGCATTTTGTTAGGAAATGATTAAAATTCTTTGGAGGTGGTATACAATATTTGTTTATTGGTGAACATTCTATTATATGTTGTTGGACTACACCGAAATATAAAAATTGATTCCCGTGGTCGACTTCTACTGTTGTTTCTTACTGTCTTACTAATGAACTTTTGGATCAGATTTTGTTTGTCGTAACCATGGGATCTT-ACCTGAACTTCAAGAACTTTGCTGACACATCACAACCAGAGAGCAGTGGGAATAATAGTAATTCTTTTTTGGCCCAACAATCTTCCATATACTCGTTTACCTTTGATGAGCTGCAAAATACATGTGGACTTGG-AAAAGATTTTGGGTCGATGAATATGGATGACCTCTTGAAGAACATTGAAGAGTCTCAAGCGTTGTCATCTTCTGCTGCTTTAGGGGGTAATTTGCAGAGACAGGGTTCTTTGACACTGCCTAGGACACTTAGTCAGAAAACTGTAGATGAAGTATGGAGAGACTTTCAGAAAGAGAGTGTTGTTGCTAATGATGCAAGTGGGACTGGAGGATCAAACTTTGGGCAGCGGGAATCTACCTTGGGAGAAATGACATTAGAAGAGTTTTTGGTTAGAGCAGGGGCCGTGCAAGAAGATATGCAACCAGCTGGATACTCAAATGATGTTACATTTGCTAGTGGTTTCACTCAACCTAGTTGTAGTGTGACCATAGCATTTCAACAAGCAACCCAAAACCCTGGACATCAAATTGCA</genome_strand>
        <mrna_strand>TCCTTGCCAAACTCGTACCTGCCAAAACGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCTTGTCATAACCATGGGATCTTCACCTGAACTTCAAGAACTTTGCTGACACGTCACAACCAGAGAGCAGTGGGAATAATAGTAATCTTTCATTGGCCCGACAATCTTCCATATACTCGTTTACCTTTGATGAGCTGCAAAGTGCATGTGGACTTGGTCAAAGATTTTGGATCGATGAATATGGATGACCTCTTGAAGAACATTGAAGAGTCTCAAGCGTTTCCATCTTCTGCTGCTGCAGGGGGTAATTTGCAGAGACAGGGTTCTTTGACACTGCCTAGGACACTTAGTCAGAGAACTGTAGATGAAGTATGGAAAGACTTTCAGAAAGAGAGTGTTATTGCTAATGATGCAAGTGGGACTGGAGGATCAAACTTTGGGCAGAGGGAATCTACTTTGGGAGAAATGACATTAGAAGAG-TCTTGGTTAGAGCAGGCGCGGTGCGAGAAGATATGCAACCAGCTGGATACTCAAATGATGTTACATTCGCTGGTGGTTTCACTCAAGCTAGTAGTAGTGTGACCATAGCATTTCAACAAGCAA-CCAAAACCCTGGACATCAAATTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E272014" ref_strand="+" ref_description="SGN-E272014 [cLEM-8-D23]">
      <seq>gggatcttacctgaacttcaagaactttgctgacacatcacaaccagagagcagtgggaataatagtaattcttttttggcccaacaatcttccatatactcgtttacctttgatgagctgcaaaatacatgtggacttggaaaagattttgggtcgatgaatatggatgacctcttgaagaacattgaagagtctcaagcgttgtcatcttctgctgctttagggggtaatttgcagagacagggttctttgacactgcctaggacacttagtcagaaaactgtagatgaagtttggagagactttcagaaagagagtgttgttgctaatgatgcaagtgggactggaggatcaaactttgggcagcgggaatctaccttgggagaaatgacattagaagagtttttggttagagcaggggccgtgcaagaagatatgcaaccagctggatactcaaatgatgttacatttgctagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="91479" stop="90402"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91179" g_stop="90702" g_length="478"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="478" r_length="478" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-E272014" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>478</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E272014" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91179" e_stop="90702"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGATCTTACCTGAACTTCAAGAACTTTGCTGACACATCACAACCAGAGAGCAGTGGGAATAATAGTAATTCTTTTTTGGCCCAACAATCTTCCATATACTCGTTTACCTTTGATGAGCTGCAAAATACATGTGGACTTGGAAAAGATTTTGGGTCGATGAATATGGATGACCTCTTGAAGAACATTGAAGAGTCTCAAGCGTTGTCATCTTCTGCTGCTTTAGGGGGTAATTTGCAGAGACAGGGTTCTTTGACACTGCCTAGGACACTTAGTCAGAAAACTGTAGATGAAGTATGGAGAGACTTTCAGAAAGAGAGTGTTGTTGCTAATGATGCAAGTGGGACTGGAGGATCAAACTTTGGGCAGCGGGAATCTACCTTGGGAGAAATGACATTAGAAGAGTTTTTGGTTAGAGCAGGGGCCGTGCAAGAAGATATGCAACCAGCTGGATACTCAAATGATGTTACATTTGCTAGT</genome_strand>
        <mrna_strand>GGGATCTTACCTGAACTTCAAGAACTTTGCTGACACATCACAACCAGAGAGCAGTGGGAATAATAGTAATTCTTTTTTGGCCCAACAATCTTCCATATACTCGTTTACCTTTGATGAGCTGCAAAATACATGTGGACTTGGAAAAGATTTTGGGTCGATGAATATGGATGACCTCTTGAAGAACATTGAAGAGTCTCAAGCGTTGTCATCTTCTGCTGCTTTAGGGGGTAATTTGCAGAGACAGGGTTCTTTGACACTGCCTAGGACACTTAGTCAGAAAACTGTAGATGAAGTTTGGAGAGACTTTCAGAAAGAGAGTGTTGTTGCTAATGATGCAAGTGGGACTGGAGGATCAAACTTTGGGCAGCGGGAATCTACCTTGGGAGAAATGACATTAGAAGAGTTTTTGGTTAGAGCAGGGGCCGTGCAAGAAGATATGCAACCAGCTGGATACTCAAATGATGTTACATTTGCTAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E472641" ref_strand="+" ref_description="SGN-E472641 [cSTB-29-O2]">
      <seq>ttttgctccttgccaaactcgtacctgccaaaacggattttccttgtcataaccatgggatcttacctgaacttcaagaactttgctgacacgtcacaaccagagagcagtgggaataatagtaatctttcattggcccgacaatcttccatatactcgtttacctttgatgagctgcaaagtgcatgtggacttggaaaagattttggatcgatgaatatggatgacctcttgaagaacattgaagagtctcaagcgtttccatcttctgctgctgcagggggtaatttgcagagacagggttctttgacactgcctaggacacttagtcagagaactgtagatgaagtatggaaagactttcagaaagagagtgttattgctaatgatgcaagtgggactggaggatcaaactttgggcagagggaatctactttgggagaaatgacattagaagagtttctggttagagcaggggcggtgcgagaagatatgcaaccagctggatactcaaatgatgttacat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="92878" stop="90410"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92580" g_stop="92545" g_length="36"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="36" r_length="36" r_score="0.861"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92544" i_stop="91200" i_length="1345">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.845" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91199" g_stop="90710" g_length="490"/>
          <reference_exon_boundary r_type="cDNA" r_start="37" r_stop="526" r_length="490" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-E472641" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>526</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E472641" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92580" e_stop="92545"/>
          <exon e_start="91199" e_stop="90710"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTACTCCTTGCAAAACTTGTACCTGCCAAAACGGGTAAACTTATTTTCTCTCTTCTCCCATTTTTACATATTAATTTTTTTCTCTTGATTTTTCACATATTATTATCTCATGTCCTAATCAAACTCGAAATGAAAAATCTTCACTCTTTTCTTGATTTTTTTTTGATGTTTAATTTGTTTTCTCAATTACAAATATGTTATTACTGATCTGACATTGTTTTAATTTTTTCGAAATGATTTATCAAAATGAGATAGTTGAAGGGTAGTTGATTGATTAATTAATTTGATGATGTTTTTTGGCACTTGAAATTATCTCTTATAGATCCATGCTTTTTTTTGTTTATGAATTCTATGATTCTGTATAGTGGGCAGTACTCGATGAATGAGTTCGATACTTAATTAGACAGTTGAATGAAGTCTTGATGTTAGTATAAAGTTTTAGATCCAAATATGTTGATGTTGAATGAAATTATGAGCTCTGAACAAAGTTAATAGATCCACTGTGTCGACAGTTTTGAGTTTTTATTATTTTGTGGAATTTACTTGAATAGTTGACTCTGGTTGAGTAGTTGATAGTTGAATGAAGTTTATCTTAGCTTCTGGGTTTTGTATTTTGGATCCAATCTTAACATAAGTGTTTTGCATTTTGAATGAGTTTTTGGACTTGAAATGAGTTTGAAGCAAAGATGGATCTACGGTGTAGCGTATCCCCTCAACAATTAGGTATTTTTTTTAAAAGAAAAATTATGTGTATATATAGATTGTGGATCTCCGAACATAAGATTAAACATTGGCTCAGTGGTTGAGGAATTCAAAATTCGGTTAGAGGTTTCAAGTTTGAAGCTCAAACACTACATTTTTATTTTTCGAATCCCCTTAGTCAAAATCATGGATCCGCCACGGGTTTGAAGAATGTTAATTGGTGCTAATTTTTTTAAATCTAAATGTGTACAAAAGGTGGTGGACTGAATCAGGTCAAACCATTAAATATAGATCTAGTTTGTATTTCATTCTCTCCATCATTGAGGTATTATAATCTGTGTTTAACCGAGATCTGCCTAATCATGATATTTCAGTTTTTCTGAGCTGTAATGAGCAAGATGTTAAGTGTTGTATTTTTCTTTACTGTTCTAATGTCCTTAAAGTGATCATCTTCAAGTCGGCAGTGAAGATTATATGTTTGAGCTTGTACGTAATCACCAATGTTGTAGCATTTTGTTAGGAAATGATTAAAATTCTTTGGAGGTGGTATACAATATTTGTTTATTGGTGAACATTCTATTATATGTTGTTGGACTACACCGAAATATAAAAATTGATTCCCGTGGTCGACTTCTACTGTTGTTTCTTACTGTCTTACTAATGAACTTTTGGATCAGATTTTGTTTGTCGTAACCATGGGATCTTACCTGAACTTCAAGAACTTTGCTGACACATCACAACCAGAGAGCAGTGGGAATAATAGTAATTCTTTTTTGGCCCAACAATCTTCCATATACTCGTTTACCTTTGATGAGCTGCAAAATACATGTGGACTTGGAAAAGATTTTGGGTCGATGAATATGGATGACCTCTTGAAGAACATTGAAGAGTCTCAAGCGTTGTCATCTTCTGCTGCTTTAGGGGGTAATTTGCAGAGACAGGGTTCTTTGACACTGCCTAGGACACTTAGTCAGAAAACTGTAGATGAAGTATGGAGAGACTTTCAGAAAGAGAGTGTTGTTGCTAATGATGCAAGTGGGACTGGAGGATCAAACTTTGGGCAGCGGGAATCTACCTTGGGAGAAATGACATTAGAAGAGTTTTTGGTTAGAGCAGGGGCCGTGCAAGAAGATATGCAACCAGCTGGATACTCAAATGATGTTACAT</genome_strand>
        <mrna_strand>TTTTGCTCCTTGCCAAACTCGTACCTGCCAAAACGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCTTGTCATAACCATGGGATCTTACCTGAACTTCAAGAACTTTGCTGACACGTCACAACCAGAGAGCAGTGGGAATAATAGTAATCTTTCATTGGCCCGACAATCTTCCATATACTCGTTTACCTTTGATGAGCTGCAAAGTGCATGTGGACTTGGAAAAGATTTTGGATCGATGAATATGGATGACCTCTTGAAGAACATTGAAGAGTCTCAAGCGTTTCCATCTTCTGCTGCTGCAGGGGGTAATTTGCAGAGACAGGGTTCTTTGACACTGCCTAGGACACTTAGTCAGAGAACTGTAGATGAAGTATGGAAAGACTTTCAGAAAGAGAGTGTTATTGCTAATGATGCAAGTGGGACTGGAGGATCAAACTTTGGGCAGAGGGAATCTACTTTGGGAGAAATGACATTAGAAGAGTTTCTGGTTAGAGCAGGGGCGGTGCGAGAAGATATGCAACCAGCTGGATACTCAAATGATGTTACAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E300774" ref_strand="+" ref_description="SGN-E300774 [cLEW-8-G15]">
      <seq>ttgtacctgccaaaacggattttgtttgtcgtaaccatgggatcttacctgaacttcaagaactttgctgacacatcacaaccagagagcagtgggaataatagtaattcttttttggcccaacaatcttccatatactcgtttacctttgatgagctgcaaaatacatgtggacttggaaaagattttgggtcgatgaatatggatgacctcttgaagaacattgaagagtctcaagcgttgtcatcttctgctgctttagggggtaatttgcagagacagggttctttgacactgcctaggacacttagtcagaaaactgtggatgaagtatggagagactttcagaaagagagtgttgttgctaatgatgcaagtgggactggaggatcaaactttgggcagcgggaatctaccttgggagaaatgacattagaagagtttttgg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="92862" stop="90470"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92562" g_stop="92545" g_length="18"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="18" r_length="18" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92544" i_stop="91200" i_length="1345">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91199" g_stop="90770" g_length="430"/>
          <reference_exon_boundary r_type="cDNA" r_start="19" r_stop="448" r_length="430" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-E300774" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>448</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E300774" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92562" e_stop="92545"/>
          <exon e_start="91199" e_stop="90770"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTACCTGCCAAAACGGGTAAACTTATTTTCTCTCTTCTCCCATTTTTACATATTAATTTTTTTCTCTTGATTTTTCACATATTATTATCTCATGTCCTAATCAAACTCGAAATGAAAAATCTTCACTCTTTTCTTGATTTTTTTTTGATGTTTAATTTGTTTTCTCAATTACAAATATGTTATTACTGATCTGACATTGTTTTAATTTTTTCGAAATGATTTATCAAAATGAGATAGTTGAAGGGTAGTTGATTGATTAATTAATTTGATGATGTTTTTTGGCACTTGAAATTATCTCTTATAGATCCATGCTTTTTTTTGTTTATGAATTCTATGATTCTGTATAGTGGGCAGTACTCGATGAATGAGTTCGATACTTAATTAGACAGTTGAATGAAGTCTTGATGTTAGTATAAAGTTTTAGATCCAAATATGTTGATGTTGAATGAAATTATGAGCTCTGAACAAAGTTAATAGATCCACTGTGTCGACAGTTTTGAGTTTTTATTATTTTGTGGAATTTACTTGAATAGTTGACTCTGGTTGAGTAGTTGATAGTTGAATGAAGTTTATCTTAGCTTCTGGGTTTTGTATTTTGGATCCAATCTTAACATAAGTGTTTTGCATTTTGAATGAGTTTTTGGACTTGAAATGAGTTTGAAGCAAAGATGGATCTACGGTGTAGCGTATCCCCTCAACAATTAGGTATTTTTTTTAAAAGAAAAATTATGTGTATATATAGATTGTGGATCTCCGAACATAAGATTAAACATTGGCTCAGTGGTTGAGGAATTCAAAATTCGGTTAGAGGTTTCAAGTTTGAAGCTCAAACACTACATTTTTATTTTTCGAATCCCCTTAGTCAAAATCATGGATCCGCCACGGGTTTGAAGAATGTTAATTGGTGCTAATTTTTTTAAATCTAAATGTGTACAAAAGGTGGTGGACTGAATCAGGTCAAACCATTAAATATAGATCTAGTTTGTATTTCATTCTCTCCATCATTGAGGTATTATAATCTGTGTTTAACCGAGATCTGCCTAATCATGATATTTCAGTTTTTCTGAGCTGTAATGAGCAAGATGTTAAGTGTTGTATTTTTCTTTACTGTTCTAATGTCCTTAAAGTGATCATCTTCAAGTCGGCAGTGAAGATTATATGTTTGAGCTTGTACGTAATCACCAATGTTGTAGCATTTTGTTAGGAAATGATTAAAATTCTTTGGAGGTGGTATACAATATTTGTTTATTGGTGAACATTCTATTATATGTTGTTGGACTACACCGAAATATAAAAATTGATTCCCGTGGTCGACTTCTACTGTTGTTTCTTACTGTCTTACTAATGAACTTTTGGATCAGATTTTGTTTGTCGTAACCATGGGATCTTACCTGAACTTCAAGAACTTTGCTGACACATCACAACCAGAGAGCAGTGGGAATAATAGTAATTCTTTTTTGGCCCAACAATCTTCCATATACTCGTTTACCTTTGATGAGCTGCAAAATACATGTGGACTTGGAAAAGATTTTGGGTCGATGAATATGGATGACCTCTTGAAGAACATTGAAGAGTCTCAAGCGTTGTCATCTTCTGCTGCTTTAGGGGGTAATTTGCAGAGACAGGGTTCTTTGACACTGCCTAGGACACTTAGTCAGAAAACTGTAGATGAAGTATGGAGAGACTTTCAGAAAGAGAGTGTTGTTGCTAATGATGCAAGTGGGACTGGAGGATCAAACTTTGGGCAGCGGGAATCTACCTTGGGAGAAATGACATTAGAAGAGTTTTTGG</genome_strand>
        <mrna_strand>TTGTACCTGCCAAAACGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGTTTGTCGTAACCATGGGATCTTACCTGAACTTCAAGAACTTTGCTGACACATCACAACCAGAGAGCAGTGGGAATAATAGTAATTCTTTTTTGGCCCAACAATCTTCCATATACTCGTTTACCTTTGATGAGCTGCAAAATACATGTGGACTTGGAAAAGATTTTGGGTCGATGAATATGGATGACCTCTTGAAGAACATTGAAGAGTCTCAAGCGTTGTCATCTTCTGCTGCTTTAGGGGGTAATTTGCAGAGACAGGGTTCTTTGACACTGCCTAGGACACTTAGTCAGAAAACTGTGGATGAAGTATGGAGAGACTTTCAGAAAGAGAGTGTTGTTGCTAATGATGCAAGTGGGACTGGAGGATCAAACTTTGGGCAGCGGGAATCTACCTTGGGAGAAATGACATTAGAAGAGTTTTTGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E482207" ref_strand="+" ref_description="SGN-E482207 [cSTD-21-G10]">
      <seq>ctcgtacctgccaaaacggattttccttgtcataaccatgggatcttacctgaacttcaagaactttgctgacacgtcacaaccagagagcagtgggaataatagtaatctttcattggcccgacaatcttccatatactcgtttacctttgatgagctgcaaagtgcatgtggacttggaaaagattttggatcgatgaatatggatgacctcttgaagaacattgaagagtctcaagcgtttccatcttctgctgctgcagggggtaatttgcagagacagggttctttgacactgcctaagacacttagtcacagaactgtagatgaagtatgggaaagacttttaaaaagaaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="92863" stop="90561"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92563" g_stop="92545" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="0.947"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92544" i_stop="91200" i_length="1345">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.845" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91199" g_stop="90861" g_length="339"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="359" r_length="340" r_score="0.926"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-E482207" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>358</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E482207" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92563" e_stop="92545"/>
          <exon e_start="91199" e_stop="90861"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTACCTGCCAAAACGGGTAAACTTATTTTCTCTCTTCTCCCATTTTTACATATTAATTTTTTTCTCTTGATTTTTCACATATTATTATCTCATGTCCTAATCAAACTCGAAATGAAAAATCTTCACTCTTTTCTTGATTTTTTTTTGATGTTTAATTTGTTTTCTCAATTACAAATATGTTATTACTGATCTGACATTGTTTTAATTTTTTCGAAATGATTTATCAAAATGAGATAGTTGAAGGGTAGTTGATTGATTAATTAATTTGATGATGTTTTTTGGCACTTGAAATTATCTCTTATAGATCCATGCTTTTTTTTGTTTATGAATTCTATGATTCTGTATAGTGGGCAGTACTCGATGAATGAGTTCGATACTTAATTAGACAGTTGAATGAAGTCTTGATGTTAGTATAAAGTTTTAGATCCAAATATGTTGATGTTGAATGAAATTATGAGCTCTGAACAAAGTTAATAGATCCACTGTGTCGACAGTTTTGAGTTTTTATTATTTTGTGGAATTTACTTGAATAGTTGACTCTGGTTGAGTAGTTGATAGTTGAATGAAGTTTATCTTAGCTTCTGGGTTTTGTATTTTGGATCCAATCTTAACATAAGTGTTTTGCATTTTGAATGAGTTTTTGGACTTGAAATGAGTTTGAAGCAAAGATGGATCTACGGTGTAGCGTATCCCCTCAACAATTAGGTATTTTTTTTAAAAGAAAAATTATGTGTATATATAGATTGTGGATCTCCGAACATAAGATTAAACATTGGCTCAGTGGTTGAGGAATTCAAAATTCGGTTAGAGGTTTCAAGTTTGAAGCTCAAACACTACATTTTTATTTTTCGAATCCCCTTAGTCAAAATCATGGATCCGCCACGGGTTTGAAGAATGTTAATTGGTGCTAATTTTTTTAAATCTAAATGTGTACAAAAGGTGGTGGACTGAATCAGGTCAAACCATTAAATATAGATCTAGTTTGTATTTCATTCTCTCCATCATTGAGGTATTATAATCTGTGTTTAACCGAGATCTGCCTAATCATGATATTTCAGTTTTTCTGAGCTGTAATGAGCAAGATGTTAAGTGTTGTATTTTTCTTTACTGTTCTAATGTCCTTAAAGTGATCATCTTCAAGTCGGCAGTGAAGATTATATGTTTGAGCTTGTACGTAATCACCAATGTTGTAGCATTTTGTTAGGAAATGATTAAAATTCTTTGGAGGTGGTATACAATATTTGTTTATTGGTGAACATTCTATTATATGTTGTTGGACTACACCGAAATATAAAAATTGATTCCCGTGGTCGACTTCTACTGTTGTTTCTTACTGTCTTACTAATGAACTTTTGGATCAGATTTTGTTTGTCGTAACCATGGGATCTTACCTGAACTTCAAGAACTTTGCTGACACATCACAACCAGAGAGCAGTGGGAATAATAGTAATTCTTTTTTGGCCCAACAATCTTCCATATACTCGTTTACCTTTGATGAGCTGCAAAATACATGTGGACTTGGAAAAGATTTTGGGTCGATGAATATGGATGACCTCTTGAAGAACATTGAAGAGTCTCAAGCGTTGTCATCTTCTGCTGCTTTAGGGGGTAATTTGCAGAGACAGGGTTCTTTGACACTGCCTAGGACACTTAGTCAGAAAACTGTAGATGAAGTAT-GGAGAGACTTTCAGAAAGAGAGT</genome_strand>
        <mrna_strand>CTCGTACCTGCCAAAACGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCCTTGTCATAACCATGGGATCTTACCTGAACTTCAAGAACTTTGCTGACACGTCACAACCAGAGAGCAGTGGGAATAATAGTAATCTTTCATTGGCCCGACAATCTTCCATATACTCGTTTACCTTTGATGAGCTGCAAAGTGCATGTGGACTTGGAAAAGATTTTGGATCGATGAATATGGATGACCTCTTGAAGAACATTGAAGAGTCTCAAGCGTTTCCATCTTCTGCTGCTGCAGGGGGTAATTTGCAGAGACAGGGTTCTTTGACACTGCCTAAGACACTTAGTCACAGAACTGTAGATGAAGTATGGGAAAGACTTTTAAAAAGAAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E273844" ref_strand="+" ref_description="SGN-E273844 [cLEN-7-I11]">
      <seq>aaacttgtacctgccaaaacggattttgtttgtcgtaaccatgggatcttacctgaacttcaagaactttgctgacacatcacaaccagagagcagtgggaataatagtaattcttttttggcccaacaatcttccatatactcgtttacctttgatgagctgcaaaatacatgtggacttggaaaagattttgggtcgatgaatatggatgacctcttgaagaacattgaagagtctcaagcgttgtcatcttctgctgctttagggggtaatttgcagagacagggttctttgacactgcctaggacacttagtcagaaaactgtagatgaagtatggagagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="92866" stop="90576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92566" g_stop="92545" g_length="22"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="22" r_length="22" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92544" i_stop="91200" i_length="1345">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91199" g_stop="90876" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="23" r_stop="346" r_length="324" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-E273844" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>346</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E273844" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92566" e_stop="92545"/>
          <exon e_start="91199" e_stop="90876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAACTTGTACCTGCCAAAACGGGTAAACTTATTTTCTCTCTTCTCCCATTTTTACATATTAATTTTTTTCTCTTGATTTTTCACATATTATTATCTCATGTCCTAATCAAACTCGAAATGAAAAATCTTCACTCTTTTCTTGATTTTTTTTTGATGTTTAATTTGTTTTCTCAATTACAAATATGTTATTACTGATCTGACATTGTTTTAATTTTTTCGAAATGATTTATCAAAATGAGATAGTTGAAGGGTAGTTGATTGATTAATTAATTTGATGATGTTTTTTGGCACTTGAAATTATCTCTTATAGATCCATGCTTTTTTTTGTTTATGAATTCTATGATTCTGTATAGTGGGCAGTACTCGATGAATGAGTTCGATACTTAATTAGACAGTTGAATGAAGTCTTGATGTTAGTATAAAGTTTTAGATCCAAATATGTTGATGTTGAATGAAATTATGAGCTCTGAACAAAGTTAATAGATCCACTGTGTCGACAGTTTTGAGTTTTTATTATTTTGTGGAATTTACTTGAATAGTTGACTCTGGTTGAGTAGTTGATAGTTGAATGAAGTTTATCTTAGCTTCTGGGTTTTGTATTTTGGATCCAATCTTAACATAAGTGTTTTGCATTTTGAATGAGTTTTTGGACTTGAAATGAGTTTGAAGCAAAGATGGATCTACGGTGTAGCGTATCCCCTCAACAATTAGGTATTTTTTTTAAAAGAAAAATTATGTGTATATATAGATTGTGGATCTCCGAACATAAGATTAAACATTGGCTCAGTGGTTGAGGAATTCAAAATTCGGTTAGAGGTTTCAAGTTTGAAGCTCAAACACTACATTTTTATTTTTCGAATCCCCTTAGTCAAAATCATGGATCCGCCACGGGTTTGAAGAATGTTAATTGGTGCTAATTTTTTTAAATCTAAATGTGTACAAAAGGTGGTGGACTGAATCAGGTCAAACCATTAAATATAGATCTAGTTTGTATTTCATTCTCTCCATCATTGAGGTATTATAATCTGTGTTTAACCGAGATCTGCCTAATCATGATATTTCAGTTTTTCTGAGCTGTAATGAGCAAGATGTTAAGTGTTGTATTTTTCTTTACTGTTCTAATGTCCTTAAAGTGATCATCTTCAAGTCGGCAGTGAAGATTATATGTTTGAGCTTGTACGTAATCACCAATGTTGTAGCATTTTGTTAGGAAATGATTAAAATTCTTTGGAGGTGGTATACAATATTTGTTTATTGGTGAACATTCTATTATATGTTGTTGGACTACACCGAAATATAAAAATTGATTCCCGTGGTCGACTTCTACTGTTGTTTCTTACTGTCTTACTAATGAACTTTTGGATCAGATTTTGTTTGTCGTAACCATGGGATCTTACCTGAACTTCAAGAACTTTGCTGACACATCACAACCAGAGAGCAGTGGGAATAATAGTAATTCTTTTTTGGCCCAACAATCTTCCATATACTCGTTTACCTTTGATGAGCTGCAAAATACATGTGGACTTGGAAAAGATTTTGGGTCGATGAATATGGATGACCTCTTGAAGAACATTGAAGAGTCTCAAGCGTTGTCATCTTCTGCTGCTTTAGGGGGTAATTTGCAGAGACAGGGTTCTTTGACACTGCCTAGGACACTTAGTCAGAAAACTGTAGATGAAGTATGGAGAGAC</genome_strand>
        <mrna_strand>AAACTTGTACCTGCCAAAACGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGTTTGTCGTAACCATGGGATCTTACCTGAACTTCAAGAACTTTGCTGACACATCACAACCAGAGAGCAGTGGGAATAATAGTAATTCTTTTTTGGCCCAACAATCTTCCATATACTCGTTTACCTTTGATGAGCTGCAAAATACATGTGGACTTGGAAAAGATTTTGGGTCGATGAATATGGATGACCTCTTGAAGAACATTGAAGAGTCTCAAGCGTTGTCATCTTCTGCTGCTTTAGGGGGTAATTTGCAGAGACAGGGTTCTTTGACACTGCCTAGGACACTTAGTCAGAAAACTGTAGATGAAGTATGGAGAGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E537614" ref_strand="+" ref_description="SGN-E537614 [TUS-56-E22]">
      <seq>ttggacttgaaatgagtttgaagcaaagatggatctacggtgtagcgtatcccctcaacaattaggtattttttttaaaagaaaaattatgtgtatatatagattgtggatctccgaacataagattaaacattggctcagtggttgaggaattcaaaattcggttagaggtttcaagtttgaagctcaaacactacatttttatttttcgaatccccttagtcaaaatcatggatccgccacgggtttgaagaatgttaattggtgctaatttttttaaatctaaatgtgtacaaaaggtggtggactgaatcaggtcaaaccattaaatatagatctagtttgtatttcattctctccatcattgaggtattataatctgtgtttaaccgagatctgcctaatcatgatatttcagtttttctgagctgtaatgagcaagatgttaagtgttgtatttttctttactgttctaatgtccttaaagtgatcatcttcaagtcggcagtgaagattatatgtttgagcttgtacgtaatcaccaatgttgtagcattttgttaggaaatgattaaaattctttggaggtggtatacaatatttgtttattggtgaacattctattatatgttgttggactacaccgaaatataaaaattgattcccgtggtcgacttctactggtgtttcttactgtcttactaatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="92220" stop="90914"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91920" g_stop="91214" g_length="707"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="707" r_length="707" r_score="0.999"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-E537614" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>707</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E537614" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91920" e_stop="91214"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGGACTTGAAATGAGTTTGAAGCAAAGATGGATCTACGGTGTAGCGTATCCCCTCAACAATTAGGTATTTTTTTTAAAAGAAAAATTATGTGTATATATAGATTGTGGATCTCCGAACATAAGATTAAACATTGGCTCAGTGGTTGAGGAATTCAAAATTCGGTTAGAGGTTTCAAGTTTGAAGCTCAAACACTACATTTTTATTTTTCGAATCCCCTTAGTCAAAATCATGGATCCGCCACGGGTTTGAAGAATGTTAATTGGTGCTAATTTTTTTAAATCTAAATGTGTACAAAAGGTGGTGGACTGAATCAGGTCAAACCATTAAATATAGATCTAGTTTGTATTTCATTCTCTCCATCATTGAGGTATTATAATCTGTGTTTAACCGAGATCTGCCTAATCATGATATTTCAGTTTTTCTGAGCTGTAATGAGCAAGATGTTAAGTGTTGTATTTTTCTTTACTGTTCTAATGTCCTTAAAGTGATCATCTTCAAGTCGGCAGTGAAGATTATATGTTTGAGCTTGTACGTAATCACCAATGTTGTAGCATTTTGTTAGGAAATGATTAAAATTCTTTGGAGGTGGTATACAATATTTGTTTATTGGTGAACATTCTATTATATGTTGTTGGACTACACCGAAATATAAAAATTGATTCCCGTGGTCGACTTCTACTGTTGTTTCTTACTGTCTTACTAATG</genome_strand>
        <mrna_strand>TTGGACTTGAAATGAGTTTGAAGCAAAGATGGATCTACGGTGTAGCGTATCCCCTCAACAATTAGGTATTTTTTTTAAAAGAAAAATTATGTGTATATATAGATTGTGGATCTCCGAACATAAGATTAAACATTGGCTCAGTGGTTGAGGAATTCAAAATTCGGTTAGAGGTTTCAAGTTTGAAGCTCAAACACTACATTTTTATTTTTCGAATCCCCTTAGTCAAAATCATGGATCCGCCACGGGTTTGAAGAATGTTAATTGGTGCTAATTTTTTTAAATCTAAATGTGTACAAAAGGTGGTGGACTGAATCAGGTCAAACCATTAAATATAGATCTAGTTTGTATTTCATTCTCTCCATCATTGAGGTATTATAATCTGTGTTTAACCGAGATCTGCCTAATCATGATATTTCAGTTTTTCTGAGCTGTAATGAGCAAGATGTTAAGTGTTGTATTTTTCTTTACTGTTCTAATGTCCTTAAAGTGATCATCTTCAAGTCGGCAGTGAAGATTATATGTTTGAGCTTGTACGTAATCACCAATGTTGTAGCATTTTGTTAGGAAATGATTAAAATTCTTTGGAGGTGGTATACAATATTTGTTTATTGGTGAACATTCTATTATATGTTGTTGGACTACACCGAAATATAAAAATTGATTCCCGTGGTCGACTTCTACTGGTGTTTCTTACTGTCTTACTAATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E266512" ref_strand="+" ref_description="SGN-E266512 [cLEI-5-G6]">
      <seq>tggacttgaaatgagtttgaagcaaagatggatctacggtgtagcgtatcccctcaacaattaggtattttttttaaaagaaaaattatgtgtatatatagattgtggatctccgaacataagattaaacattggctcagtggttgaggaattcaaaattcggttagaggtttcaagtttgaagctcaaacactacatttttatttttcgaatccccttagtcaaaatcatggatccgccacgggtttgaagaatgttaattggtgctaatttttttaaatctaaatgtgtacaaaaggtggtggactgaatcaggtcaaaccattaaatatagatctagtttgtatttcattctctccatcattgaggtattataatctgtgtttaaccgagatctgcctaatcatgatatttcagtttttctgagctgtaatgagcaagatgttaagtgttgtatttttctttactgttctaatgtccttaaagtgatcatcttcaagtcggcagtgaagattatatgtttgagcttgtacgtaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="92219" stop="91081"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="91919" g_stop="91381" g_length="539"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="539" r_length="539" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-E266512" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>539</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E266512" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="91919" e_stop="91381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGACTTGAAATGAGTTTGAAGCAAAGATGGATCTACGGTGTAGCGTATCCCCTCAACAATTAGGTATTTTTTTTAAAAGAAAAATTATGTGTATATATAGATTGTGGATCTCCGAACATAAGATTAAACATTGGCTCAGTGGTTGAGGAATTCAAAATTCGGTTAGAGGTTTCAAGTTTGAAGCTCAAACACTACATTTTTATTTTTCGAATCCCCTTAGTCAAAATCATGGATCCGCCACGGGTTTGAAGAATGTTAATTGGTGCTAATTTTTTTAAATCTAAATGTGTACAAAAGGTGGTGGACTGAATCAGGTCAAACCATTAAATATAGATCTAGTTTGTATTTCATTCTCTCCATCATTGAGGTATTATAATCTGTGTTTAACCGAGATCTGCCTAATCATGATATTTCAGTTTTTCTGAGCTGTAATGAGCAAGATGTTAAGTGTTGTATTTTTCTTTACTGTTCTAATGTCCTTAAAGTGATCATCTTCAAGTCGGCAGTGAAGATTATATGTTTGAGCTTGTACGTAATC</genome_strand>
        <mrna_strand>TGGACTTGAAATGAGTTTGAAGCAAAGATGGATCTACGGTGTAGCGTATCCCCTCAACAATTAGGTATTTTTTTTAAAAGAAAAATTATGTGTATATATAGATTGTGGATCTCCGAACATAAGATTAAACATTGGCTCAGTGGTTGAGGAATTCAAAATTCGGTTAGAGGTTTCAAGTTTGAAGCTCAAACACTACATTTTTATTTTTCGAATCCCCTTAGTCAAAATCATGGATCCGCCACGGGTTTGAAGAATGTTAATTGGTGCTAATTTTTTTAAATCTAAATGTGTACAAAAGGTGGTGGACTGAATCAGGTCAAACCATTAAATATAGATCTAGTTTGTATTTCATTCTCTCCATCATTGAGGTATTATAATCTGTGTTTAACCGAGATCTGCCTAATCATGATATTTCAGTTTTTCTGAGCTGTAATGAGCAAGATGTTAAGTGTTGTATTTTTCTTTACTGTTCTAATGTCCTTAAAGTGATCATCTTCAAGTCGGCAGTGAAGATTATATGTTTGAGCTTGTACGTAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E608581" ref_strand="+" ref_description="SGN-E608581 [24570]">
      <seq>tctacatttcatgtaatgtgtgtcgaagaagattgaaccaacaaatagtatctatcgatgcaacaattgcaataaagattgcaagtttcctttggtcaggtacaagatacacctaaaagtgacagataggactggagacactacttttaccatatttaatgttgtggctgagaaactcattgatacatcagctcacaagttgttcaacaagcttaccatggctaacaatgatgtgcctgtccaagtccaaagcctctgcgggaaagaatttgtttttaaactgagattaaatcattataatttgaaagaagggcttgagaattttacaatatcaaagctttggattccagatgataatttggaagtacaatacaaactaaggaaagaagaaaaggggaagaacttatccaacaatgaaaccancccaaaagatcagggaaccaacggattgaccaaagagatgaacaatcaggtatctgttgatgtgttgttgactgacttggaagatcatgaggatgaactacatgtcactaattgtgctactagtaggaaacgaagaaacctaatcatagatgatgaggaattaagcgttgcagacacaaataaggtcaagaagtaaaggga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="+" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="120399" stop="121867"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="120698" g_stop="120797" g_length="100"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="99" r_length="99" r_score="0.920"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="120798" i_stop="120871" i_length="74">
            <donor d_prob="0.842" d_score="0.94"/>
            <acceptor a_prob="0.993" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="120872" g_stop="121166" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="100" r_stop="394" r_length="295" r_score="0.932"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="121167" i_stop="121247" i_length="81">
            <donor d_prob="0.963" d_score="0.98"/>
            <acceptor a_prob="1.000" a_score="0.90"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="121248" g_stop="121316" g_length="69"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="463" r_length="69" r_score="0.913"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="121317" i_stop="121406" i_length="90">
            <donor d_prob="0.998" d_score="0.90"/>
            <acceptor a_prob="0.708" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="121407" g_stop="121567" g_length="161"/>
          <reference_exon_boundary r_type="cDNA" r_start="464" r_stop="624" r_length="161" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="+" ref_id="SGN-E608581" ref_strand="+">
        <total_alignment_score>0.926</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E608581" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="120698" e_stop="120797"/>
          <exon e_start="120872" e_stop="121166"/>
          <exon e_start="121248" e_stop="121316"/>
          <exon e_start="121407" e_stop="121567"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACTACATTTCATGCAATGTGTGCTCGAAGAAGATTTAACCAACACATAGTATTTATCGATGCCACAATTGCAATAAAGATTGCAAATTTCCTTTGGTCAGGTAACCATTTACGAAGGACTGTGAATTAGGTTTGTATATGTTGTGAATGAATCTAACTTACTATGTAAACGTAGGTACAAGATACACCTAAAAGTGACAGATAGGACCGGAGACACTACTTTTATCTTATTTAATGCGGTGGCTGAGAAACTCCTTGATACATCAGCTCAAAAGTTGTTCAACAAGCTTACTACAACTAACAATGATGCGCCTGTCCAAGTCCAAAGCCTTTGAGGGAAAGAATTTGTTTTTAAAATGAGATTAAATCACTATAATTTGAAAGAAGGTCTTGAGAATTTTACAATATCAAAGTGTTGGATTCAAGATGATAATTTGGAAGTACAATACAAACTAAGGAAAGAAGAAAAGGTATTGCAATATAGACTATGAGTTTGTAATTTACAATTACGTTTACTTTGTAATTTATTTTTCATACTGTTCTTCTTCCAGGGGAAGAACTTATCCAAAAATGAAACTGACCCAAAAGATCAGGAAACCAACGGATTGACCAAACAGATGGTAATTACATTTAATGTTTTAATATAAAAATCAAATCATTTTAAGGATTAACATGGTTAATAAATATGTTGATAAATTTACTTTTTGAAGAACAATCAGGTATCTGTTGATGTGTTGTTGACTGACTTGGAAGATTATGAGGACGAAGTAAATGTAACTAATGGTGCTAAGAGTAGAAAACGAAGAAACCTAATCATAGATGATGAGGAATTAAGCGTTCAAGGCACAAATAAGGTCAAGAAGTAAAGGGA</genome_strand>
        <mrna_strand>TCTACATTTCATGTAATGTGTG-TCGAAGAAGATTGAACCAACAAATAGTATCTATCGATGCAACAATTGCAATAAAGATTGCAAGTTTCCTTTGGTCAG..........................................................................GTACAAGATACACCTAAAAGTGACAGATAGGACTGGAGACACTACTTTTACCATATTTAATGTTGTGGCTGAGAAACTCATTGATACATCAGCTCACAAGTTGTTCAACAAGCTTACCATGGCTAACAATGATGTGCCTGTCCAAGTCCAAAGCCTCTGCGGGAAAGAATTTGTTTTTAAACTGAGATTAAATCATTATAATTTGAAAGAAGGGCTTGAGAATTTTACAATATCAAAGCTTTGGATTCCAGATGATAATTTGGAAGTACAATACAAACTAAGGAAAGAAGAAAAG.................................................................................GGGAAGAACTTATCCAACAATGAAACCANCCCAAAAGATCAGGGAACCAACGGATTGACCAAAGAGATG..........................................................................................AACAATCAGGTATCTGTTGATGTGTTGTTGACTGACTTGGAAGATCATGAGGATGAACTACATGTCACTAATTGTGCTACTAGTAGGAAACGAAGAAACCTAATCATAGATGATGAGGAATTAAGCGTTGCAGACACAAATAAGGTCAAGAAGTAAAGGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392668" ref_strand="+" ref_description="SGN-E392668 [TUS-36-H3](-)">
      <seq>attcctataattatgaaacccatatgagagacagaggaataggctattcttttttttaaattccgttggccaagagatgttgaagctgcatagattatttgtattgtacctattatcatcaaccaaggagaaaatatagaatgggcatgaggtaataattccatattgattcgaattaatccatacgctcccatttttaataagattccggctagaagcatacaagtactgtaatgtgcttctccatgggtatctggtaaccatgtgtgtagggggataatgggcgatttgacagcaaaagcaataaaaaatccaatatagaagattatttctaaaaccacaggatatgactgattaactgatgtttcaaaatttaatgttggttcattagaaccatataaagcaacacccaaaactcccattaagagaaaaacggaaccccccgccgtgtacaaaataaattttgtagctgagtacagacgtttctttcctccccacatggctagaagtagataaacaggaattaattctaactcccacatgatgaaaaaaagtaaaaggtcccgagacgaaaataatccaatttgaccactgtacattgctaacatgagaaaatggaataatctag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="127157" stop="125975"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="126848" g_stop="126275" g_length="574"/>
          <reference_exon_boundary r_type="cDNA" r_start="56" r_stop="628" r_length="573" r_score="0.951"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-E392668" ref_strand="+">
        <total_alignment_score>0.951</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="0.914" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392668" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="126848" e_stop="126275"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAATTCCTTTGGCCAAGAGATGTTGAAGCTGCATAGATTATTTGTATTGTACCTATTACCATCAACCAAGGAGAAAATATATAATTGGGCATGACATAATAATTTCATATTGATTCGTATTAATTCATACGCTCCCATTTTTAATAAGATTCCATCTATAAGCATACAAGTAATGTAATGTGCTTCTCCAAGGATATCTGGTAACTATGTGTGTAGGGGGATAATGGGCGATTTGACAGCAAAAGCAATAAAAAATCCAATATAGAAGATTATTTCTAAAACCACGAGATATGACTGATTAACTGATGTTTCAAAATTTAATGTTGGTTCATTAGAACCATATAAAGCAACACCCTAAACTCCCATTAAGAGAAAAACGGAACCCCCCGCCGTGTACAAAATAAATTTTGTAGCTAAGTACAGACGTTTCTTTCCTCCCCACATGGCTAGAAGTAGATAAACAACAATTAATTATAACTCCCACATGATGAAAAAAAGTAAAAGGTCCCGAGACGAAAATGATCCAATTTGACCATTGTAAATTGCTAACATGAAAAAATGAAATAATCTAG</genome_strand>
        <mrna_strand>TTAAATTCCGTTGGCCAAGAGATGTTGAAGCTGCATAGATTATTTGTATTGTACCTATTATCATCAACCAAGGAGAAAATATAGAA-TGGGCATGAGGTAATAATTCCATATTGATTCGAATTAATCCATACGCTCCCATTTTTAATAAGATTCCGGCTAGAAGCATACAAGTACTGTAATGTGCTTCTCCATGGGTATCTGGTAACCATGTGTGTAGGGGGATAATGGGCGATTTGACAGCAAAAGCAATAAAAAATCCAATATAGAAGATTATTTCTAAAACCACAGGATATGACTGATTAACTGATGTTTCAAAATTTAATGTTGGTTCATTAGAACCATATAAAGCAACACCCAAAACTCCCATTAAGAGAAAAACGGAACCCCCCGCCGTGTACAAAATAAATTTTGTAGCTGAGTACAGACGTTTCTTTCCTCCCCACATGGCTAGAAGTAGATAAACAGGAATTAATTCTAACTCCCACATGATGAAAAAAAGTAAAAGGTCCCGAGACGAAAATAATCCAATTTGACCACTGTACATTGCTAACATGAGAAAATGGAATAATCTAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E614017" ref_strand="+" ref_description="SGN-E614017 [63798]">
      <seq>cgggtaagttccgacccgcacgaaaggcgtaacgatctgggcactgtctcggagagaggctcggtgaaatagacatgtctgtgaagatgcggactacctgcacctggacagaaagaccctatgaagcttcactgttccctgggattggctttgggcctttcctgcgcagcttaggtggaaggcgaagaaggcctccttccgggggggcccgagccatcagtgagataccactctggaagggctagaattctaaccttgtgtcaggacctacgggccaagggacagtctcaggtagacagtttctatggggcgtaggcctcccaaaaggtaacggaggcgtgcaaaggtttcctcgggccggacggagattggccctcgagtgcaaaggcagaagggagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="131033" stop="130036"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="130733" g_stop="130336" g_length="398"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-E614017" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>398</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E614017" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="130733" e_stop="130336"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGGTAAGTTTTGACCCGCACGAAAGGCGTAACGATCTGGGCACTGTATCAGAGAAAGGCTCAGTGAAATAGACATGTCTGTGAAGATGCGCACTACCTGCACCTGGATAGAAAGACCCTATGAAGCTTCACTGTTCCCTAGGATTGGCTTTGGGCCTTTGCTGCGCAGCTTAGGTGGAAGGCAAAGAAGGCCTCCTTCC-GGGGGGCCCGAGCCGTCAGTGAGATACCACGCTGGAAGGGATAGAATTCTAACCTTGAATCAGGACCTACGGGCCAAGGGACAGTCTCAGGTAGACTGTTTCTATGGAGCGTAGGCCTCTCAAAAGGTAATGGAGGTGTGCAAAGGTTTCCTCGAGTCGGATGGAGATTGGCCCTCGAGTGAAAAGGCATAAGGGAGC</genome_strand>
        <mrna_strand>CGGGTAAGTTCCGACCCGCACGAAAGGCGTAACGATCTGGGCACTGTCTCGGAGAGAGGCTCGGTGAAATAGACATGTCTGTGAAGATGCGGACTACCTGCACCTGGACAGAAAGACCCTATGAAGCTTCACTGTTCCCTGGGATTGGCTTTGGGCCTTTCCTGCGCAGCTTAGGTGGAAGGCGAAGAAGGCCTCCTTCCGGGGGGGCCCGAGCCATCAGTGAGATACCACTCTGGAAGGGCTAGAATTCTAACCTTGTGTCAGGACCTACGGGCCAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCGGACGGAGATTGGCCCTCGAGTGCAAAGGCAGAAGGGAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>54</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="1437" PGL_stop="2308"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="1437" e_stop="2308"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="1437" e_stop="2308" e_length="872"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1437" stop="2131"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347893" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="1561" stop="2308"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370597" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCTGTTCAGCAATAATAACTACATGTTTCCAGCTACTTGGAAGTCTTCAAGCCAGTCATAATCCTTAATGAGCTGTTACAACTGCAGTCAATGTGACCTCAACCTTTTGCTTTTGCAGAGAAAGGACAGTTGCTTACCAGATGCTTATAAATTGGTTCTTTCGTACAACCAATTGGATATTCTTTTGTTGTGTGAATTCCTTTTTACCAAAAGTTGTGAGGAACCTCAGAGATTTTGGTTCCTCAAAGGAGGAATTCAGGAAGTCCTCAGGGCTTTCGTCTATTGGTTAGAACACAACGCATGATGTGTGGATTAGGTGTACATCACAAGTTTGAACTCTGCCACCGGCAGAATCCTAGTATTTAAGTGGAGAAGGGTTAAGGTACAGGCCCATTATCCACCAAACTTCAGACTGTGCACCAGTTGTCTCTCAAAAAATTTCAGTTTCAACGAAAATAAGAGAGATTTTGGGAGCATACACCTTGTAAAATGGAAGGATATATAATTTGTGCAGTTGGAAACTGGTAAAGCTGGCCACTGGGATATCAGAAAGTGACTGCATCATAGGGACTATTTGCTGTCAGTAGTCTGCTTAAGCTGAAAGCATTAGACCCGAACACAGCACTTGATCAAATTGCTTCTCTAGCTGATGAGTTATTTGCATCTGCTGTTGTATCCAAGTAAGCAACAAGCTTCATTAAAGTAACTGTTAAACGACCCACAGCTATTGTTTGATTGTTTGTGTTCCCTTAAGTAGTGATTTTTCTTAAGTAGGAGAGTATGTAAATCTGGTGACTTGTACAGTTTGGTATCATGTATGCTTGAACATAACGTACTGATATTTTGAGAAAACTAAGGACAACTTCTCTAA</gDNA_template>
            <first_frame> F  C  S  A  I  I  T  T  C  F  Q  L  L  G  S  L  Q  A  S  H  N  P  *  *  A  V  T  T  A  V  N  V  T  S  T  F  C  F  C  R  E  R  T  V  A  Y  Q  M  L  I  N  W  F  F  R  T  T  N  W  I  F  F  C  C  V  N  S  F  L  P  K  V  V  R  N  L  R  D  F  G  S  S  K  E  E  F  R  K  S  S  G  L  S  S  I  G  *  N  T  T  H  D  V  W  I  R  C  T  S  Q  V  *  T  L  P  P  A  E  S  *  Y  L  S  G  E  G  L  R  Y  R  P  I  I  H  Q  T  S  D  C  A  P  V  V  S  Q  K  I  S  V  S  T  K  I  R  E  I  L  G  A  Y  T  L  *  N  G  R  I  Y  N  L  C  S  W  K  L  V  K  L  A  T  G  I  S  E  S  D  C  I  I  G  T  I  C  C  Q  *  S  A  *  A  E  S  I  R  P  E  H  S  T  *  S  N  C  F  S  S  *  *  V  I  C  I  C  C  C  I  Q  V  S  N  K  L  H  *  S  N  C  *  T  T  H  S  Y  C  L  I  V  C  V  P  L  S  S  D  F  S  *  V  G  E  Y  V  N  L  V  T  C  T  V  W  Y  H  V  C  L  N  I  T  Y  *  Y  F  E  K  T  K  D  N  F  S   </first_frame>
            <second_frame>  S  V  Q  Q  *  *  L  H  V  S  S  Y  L  E  V  F  K  P  V  I  I  L  N  E  L  L  Q  L  Q  S  M  *  P  Q  P  F  A  F  A  E  K  G  Q  L  L  T  R  C  L  *  I  G  S  F  V  Q  P  I  G  Y  S  F  V  V  *  I  P  F  Y  Q  K  L  *  G  T  S  E  I  L  V  P  Q  R  R  N  S  G  S  P  Q  G  F  R  L  L  V  R  T  Q  R  M  M  C  G  L  G  V  H  H  K  F  E  L  C  H  R  Q  N  P  S  I  *  V  E  K  G  *  G  T  G  P  L  S  T  K  L  Q  T  V  H  Q  L  S  L  K  K  F  Q  F  Q  R  K  *  E  R  F  W  E  H  T  P  C  K  M  E  G  Y  I  I  C  A  V  G  N  W  *  S  W  P  L  G  Y  Q  K  V  T  A  S  *  G  L  F  A  V  S  S  L  L  K  L  K  A  L  D  P  N  T  A  L  D  Q  I  A  S  L  A  D  E  L  F  A  S  A  V  V  S  K  *  A  T  S  F  I  K  V  T  V  K  R  P  T  A  I  V  *  L  F  V  F  P  *  V  V  I  F  L  K  *  E  S  M  *  I  W  *  L  V  Q  F  G  I  M  Y  A  *  T  *  R  T  D  I  L  R  K  L  R  T  T  S  L  </second_frame>
            <third_frame>   L  F  S  N  N  N  Y  M  F  P  A  T  W  K  S  S  S  Q  S  *  S  L  M  S  C  Y  N  C  S  Q  C  D  L  N  L  L  L  L  Q  R  K  D  S  C  L  P  D  A  Y  K  L  V  L  S  Y  N  Q  L  D  I  L  L  L  C  E  F  L  F  T  K  S  C  E  E  P  Q  R  F  W  F  L  K  G  G  I  Q  E  V  L  R  A  F  V  Y  W  L  E  H  N  A  *  C  V  D  *  V  Y  I  T  S  L  N  S  A  T  G  R  I  L  V  F  K  W  R  R  V  K  V  Q  A  H  Y  P  P  N  F  R  L  C  T  S  C  L  S  K  N  F  S  F  N  E  N  K  R  D  F  G  S  I  H  L  V  K  W  K  D  I  *  F  V  Q  L  E  T  G  K  A  G  H  W  D  I  R  K  *  L  H  H  R  D  Y  L  L  S  V  V  C  L  S  *  K  H  *  T  R  T  Q  H  L  I  K  L  L  L  *  L  M  S  Y  L  H  L  L  L  Y  P  S  K  Q  Q  A  S  L  K  *  L  L  N  D  P  Q  L  L  F  D  C  L  C  S  L  K  *  *  F  F  L  S  R  R  V  C  K  S  G  D  L  Y  S  L  V  S  C  M  L  E  H  N  V  L  I  F  *  E  N  *  G  Q  L  L  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0074N01.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1499" stop="1741"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>240</number_coding_nucleotides>
                  <number_encoded_amino_acids>80</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SLMSCYNCSQCDLNLLLLQRKDSCLPDAYKLVLSYNQLDILLLCEFLFTKSCEEPQRFWFLKGGIQEVLRAFVYWLEHNA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0074N01.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1509" stop="1727"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>216</number_coding_nucleotides>
                  <number_encoded_amino_acids>72</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AVTTAVNVTSTFCFCRERTVAYQMLINWFFRTTNWIFFCCVNSFLPKVVRNLRDFGSSKEEFRKSSGLSSIG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="14840" PGL_stop="23465"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14840" e_stop="15152"/>
            <exon e_start="15250" e_stop="15363"/>
            <exon e_start="20307" e_stop="20402"/>
            <exon e_start="21697" e_stop="21771"/>
            <exon e_start="22013" e_stop="22080"/>
            <exon e_start="23137" e_stop="23326"/>
            <exon e_start="23379" e_stop="23414"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.665" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.987" e_score="1.000"/>
          <exon-intron don_prob="0.521" acc_prob="0.349" e_score="0.984"/>
          <exon-only e_score="0.917"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14840" e_stop="15152" e_length="313"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="15153" i_stop="15249" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15250" e_stop="15363" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.949" acc_prob="0.665">
            <gDNA_intron_boundary i_start="15364" i_stop="20306" i_length="4943"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20307" e_stop="20402" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.971">
            <gDNA_intron_boundary i_start="20403" i_stop="21696" i_length="1294"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21697" e_stop="21771" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.970" acc_prob="0.981">
            <gDNA_intron_boundary i_start="21772" i_stop="22012" i_length="241"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="22013" e_stop="22080" e_length="68"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.987">
            <gDNA_intron_boundary i_start="22081" i_stop="23136" i_length="1056"/>
          </intron>
          <exon e_serial="6" e_score="0.984">
            <gDNA_exon_boundary e_start="23137" e_stop="23326" e_length="190"/>
          </exon>
          <intron i_serial="6" don_prob="0.521" acc_prob="0.349">
            <gDNA_intron_boundary i_start="23327" i_stop="23378" i_length="52"/>
          </intron>
          <exon e_serial="7" e_score="0.917">
            <gDNA_exon_boundary e_start="23379" e_stop="23414" e_length="36"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14840" stop="15152"/>
              <exon start="15250" stop="15363"/>
              <exon start="20307" stop="20378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14840" stop="15152"/>
              <exon start="15250" stop="15363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14855" stop="15152"/>
              <exon start="15250" stop="15363"/>
              <exon start="20307" stop="20402"/>
              <exon start="21697" stop="21771"/>
              <exon start="22013" stop="22071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14886" stop="15152"/>
              <exon start="15250" stop="15363"/>
              <exon start="20307" stop="20351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14926" stop="15152"/>
              <exon start="15250" stop="15363"/>
              <exon start="20307" stop="20402"/>
              <exon start="21697" stop="21771"/>
              <exon start="22013" stop="22080"/>
              <exon start="23137" stop="23178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14932" stop="15152"/>
              <exon start="15250" stop="15363"/>
              <exon start="20307" stop="20402"/>
              <exon start="21697" stop="21771"/>
              <exon start="22013" stop="22080"/>
              <exon start="23137" stop="23229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14932" stop="15152"/>
              <exon start="15250" stop="15363"/>
              <exon start="20307" stop="20402"/>
              <exon start="21697" stop="21771"/>
              <exon start="22013" stop="22080"/>
              <exon start="23137" stop="23151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15048" stop="15152"/>
              <exon start="15250" stop="15363"/>
              <exon start="20307" stop="20402"/>
              <exon start="21697" stop="21771"/>
              <exon start="22013" stop="22080"/>
              <exon start="23137" stop="23326"/>
              <exon start="23379" stop="23414"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E347037" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15082" stop="15152"/>
              <exon start="15250" stop="15363"/>
              <exon start="20307" stop="20378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282634" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAAGTAGAAAGTCATTCATTTGCAGCATTCCCATGGCCTTATCCTCACTATCCCCTCCATTAACACATATTTCTTCAACGAAACTTCATCTCTCTTTCCCTTGTATCGTAAATCCTCATCCTCATTCCCATAATTATACCAACCTTTCTCCTCTCAATAAAAAATGGCAGACCAACGTTTCTTTCTTCCCTTCTTTCTTCAACAAGAAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCCATTGAACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAG : ATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAACTCTGCTTAATGGAAAATGGGAACTTATATACACTACATCAAAGTCTATTTTACAGATTCAG : AGACCCAAGATTTTGCGATCTAGATTGAATTATCAAGCAATAAATGTAGATACACTTCGGGCTCAGAATATGGAAGGATGGCCCTTCTTCAACCAG : GTTACTGCAGATTTGACCCCGCTGAATGCACAAAAGGTGGCAGTAAAGTTTGATTATTTCAAAATTGCTGGACTA : ATACCTATTAAAGCTCCTGGAAGAGCTAAAGGCGAGCTTGAAATTACTTACTTGGATGAAGAATTGAG : GGTATCAAGAGGTGATCTTGGCAACTTGTTCATTTTGAAAATGGTTGACCCTTCTTACAAGGTCCCTACTTGAGATTGCTACTATCAACTTTATAGAGTTACTAATTAGTGTCACATCTTATATTATAATATTATATGCCAAGTCTGTGCAAAGGATTCACAAGCATTTTCTCTCTTCAATTTAACTACT : CTTTATCAAAATTTCTTGTCATAATCAACATGACCT</gDNA_template>
            <first_frame> R  K  *  K  V  I  H  L  Q  H  S  H  G  L  I  L  T  I  P  S  I  N  T  Y  F  F  N  E  T  S  S  L  F  P  L  Y  R  K  S  S  S  S  F  P  *  L  Y  Q  P  F  S  S  Q  *  K  M  A  D  Q  R  F  F  L  P  F  F  L  Q  Q  E  D  Q  R  P  Y  T  H  *  T  R  A  S  S  S  H  *  T  S  *  S  W  R  *  R  H  S  S  R  P  A  D  N  *  S   : D  C  L  Q  T  *  S  L  Q  S  N  K  G  A  P  Q  L  N  S  A  *  W  K  M  G  T  Y  I  H  Y  I  K  V  Y  F  T  D  S   : E  T  Q  D  F  A  I  *  I  E  L  S  S  N  K  C  R  Y  T  S  G  S  E  Y  G  R  M  A  L  L  Q  P   : G  Y  C  R  F  D  P  A  E  C  T  K  G  G  S  K  V  *  L  F  Q  N  C  W  T   : N  T  Y  *  S  S  W  K  S  *  R  R  A  *  N  Y  L  L  G  *  R  I  E  :  G  I  K  R  *  S  W  Q  L  V  H  F  E  N  G  *  P  F  L  Q  G  P  Y  L  R  L  L  L  S  T  L  *  S  Y  *  L  V  S  H  L  I  L  *  Y  Y  M  P  S  L  C  K  G  F  T  S  I  F  S  L  Q  F  N  Y   : S  L  S  K  F  L  V  I  I  N  M  T  </first_frame>
            <second_frame>  E  S  R  K  S  F  I  C  S  I  P  M  A  L  S  S  L  S  P  P  L  T  H  I  S  S  T  K  L  H  L  S  F  P  C  I  V  N  P  H  P  H  S  H  N  Y  T  N  L  S  P  L  N  K  K  W  Q  T  N  V  S  F  F  P  S  F  F  N  K  K  T  K  D  P  T  P  I  K  Q  E  L  L  Q  A  I  E  P  L  D  R  G  A  D  A  T  P  Q  D  Q  Q  I  I  D  Q  :  I  A  C  R  L  E  A  C  N  P  T  K  E  P  L  N  S  T  L  L  N  G  K  W  E  L  I  Y  T  T  S  K  S  I  L  Q  I  Q  :  R  P  K  I  L  R  S  R  L  N  Y  Q  A  I  N  V  D  T  L  R  A  Q  N  M  E  G  W  P  F  F  N  Q  :  V  T  A  D  L  T  P  L  N  A  Q  K  V  A  V  K  F  D  Y  F  K  I  A  G  L  :  I  P  I  K  A  P  G  R  A  K  G  E  L  E  I  T  Y  L  D  E  E  L  R :   V  S  R  G  D  L  G  N  L  F  I  L  K  M  V  D  P  S  Y  K  V  P  T  *  D  C  Y  Y  Q  L  Y  R  V  T  N  *  C  H  I  L  Y  Y  N  I  I  C  Q  V  C  A  K  D  S  Q  A  F  S  L  F  N  L  T  T  :  L  Y  Q  N  F  L  S  *  S  T  *  P </second_frame>
            <third_frame>   K  V  E  S  H  S  F  A  A  F  P  W  P  Y  P  H  Y  P  L  H  *  H  I  F  L  Q  R  N  F  I  S  L  S  L  V  S  *  I  L  I  L  I  P  I  I  I  P  T  F  L  L  S  I  K  N  G  R  P  T  F  L  S  S  L  L  S  S  T  R  R  P  K  T  L  H  P  L  N  K  S  F  F  K  P  L  N  L  L  I  V  A  L  T  P  L  L  K  T  S  R  *  L  I  R :   L  L  A  D  L  K  L  A  I  Q  Q  R  S  P  S  T  Q  L  C  L  M  E  N  G  N  L  Y  T  L  H  Q  S  L  F  Y  R  F  R :   D  P  R  F  C  D  L  D  *  I  I  K  Q  *  M  *  I  H  F  G  L  R  I  W  K  D  G  P  S  S  T  R :   L  L  Q  I  *  P  R  *  M  H  K  R  W  Q  *  S  L  I  I  S  K  L  L  D  * :   Y  L  L  K  L  L  E  E  L  K  A  S  L  K  L  L  T  W  M  K  N  *   : G  Y  Q  E  V  I  L  A  T  C  S  F  *  K  W  L  T  L  L  T  R  S  L  L  E  I  A  T  I  N  F  I  E  L  L  I  S  V  T  S  Y  I  I  I  L  Y  A  K  S  V  Q  R  I  H  K  H  F  L  S  S  I  *  L  L :   F  I  K  I  S  C  H  N  Q  H  D   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0074N01.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14841" stop="15152"/>
                    <exon start="15250" stop="15363"/>
                    <exon start="20307" stop="20402"/>
                    <exon start="21697" stop="21771"/>
                    <exon start="22013" stop="22080"/>
                    <exon start="23137" stop="23209"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>735</number_coding_nucleotides>
                  <number_encoded_amino_acids>245</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESRKSFICSIPMALSSLSPPLTHISSTKLHLSFPCIVNPHPHSHNYTNLSPLNKKWQTNVSFFPSFFNKKTKDPTPIKQELLQAIEPLDRGADATPQDQQIIDQIACRLEACNPTKEPLNSTLLNGKWELIYTTSKSILQIQRPKILRSRLNYQAINVDTLRAQNMEGWPFFNQVTADLTPLNAQKVAVKFDYFKIAGLIPIKAPGRAKGELEITYLDEELRVSRGDLGNLFILKMVDPSYKVPT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="14840" e_stop="15152"/>
            <exon e_start="15250" e_stop="15363"/>
            <exon e_start="20307" e_stop="20402"/>
            <exon e_start="21697" e_stop="21771"/>
            <exon e_start="22013" e_stop="22080"/>
            <exon e_start="23137" e_stop="23465"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.949" acc_prob="0.665" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="0.888"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14840" e_stop="15152" e_length="313"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="15153" i_stop="15249" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15250" e_stop="15363" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.949" acc_prob="0.665">
            <gDNA_intron_boundary i_start="15364" i_stop="20306" i_length="4943"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20307" e_stop="20402" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.971">
            <gDNA_intron_boundary i_start="20403" i_stop="21696" i_length="1294"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21697" e_stop="21771" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.970" acc_prob="0.981">
            <gDNA_intron_boundary i_start="21772" i_stop="22012" i_length="241"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="22013" e_stop="22080" e_length="68"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.987">
            <gDNA_intron_boundary i_start="22081" i_stop="23136" i_length="1056"/>
          </intron>
          <exon e_serial="6" e_score="0.888">
            <gDNA_exon_boundary e_start="23137" e_stop="23465" e_length="329"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14840" stop="15152"/>
              <exon start="15250" stop="15363"/>
              <exon start="20307" stop="20378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238490" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14840" stop="15152"/>
              <exon start="15250" stop="15363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14855" stop="15152"/>
              <exon start="15250" stop="15363"/>
              <exon start="20307" stop="20402"/>
              <exon start="21697" stop="21771"/>
              <exon start="22013" stop="22071"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E345969" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14886" stop="15152"/>
              <exon start="15250" stop="15363"/>
              <exon start="20307" stop="20351"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E209459" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14926" stop="15152"/>
              <exon start="15250" stop="15363"/>
              <exon start="20307" stop="20402"/>
              <exon start="21697" stop="21771"/>
              <exon start="22013" stop="22080"/>
              <exon start="23137" stop="23178"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E408543" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14932" stop="15152"/>
              <exon start="15250" stop="15363"/>
              <exon start="20307" stop="20402"/>
              <exon start="21697" stop="21771"/>
              <exon start="22013" stop="22080"/>
              <exon start="23137" stop="23229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E612558" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14932" stop="15152"/>
              <exon start="15250" stop="15363"/>
              <exon start="20307" stop="20402"/>
              <exon start="21697" stop="21771"/>
              <exon start="22013" stop="22080"/>
              <exon start="23137" stop="23151"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E560938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15082" stop="15152"/>
              <exon start="15250" stop="15363"/>
              <exon start="20307" stop="20378"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E282634" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20307" stop="20402"/>
              <exon start="21697" stop="21771"/>
              <exon start="22013" stop="22080"/>
              <exon start="23137" stop="23465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E412292" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAAGTAGAAAGTCATTCATTTGCAGCATTCCCATGGCCTTATCCTCACTATCCCCTCCATTAACACATATTTCTTCAACGAAACTTCATCTCTCTTTCCCTTGTATCGTAAATCCTCATCCTCATTCCCATAATTATACCAACCTTTCTCCTCTCAATAAAAAATGGCAGACCAACGTTTCTTTCTTCCCTTCTTTCTTCAACAAGAAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCCATTGAACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAG : ATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAACTCTGCTTAATGGAAAATGGGAACTTATATACACTACATCAAAGTCTATTTTACAGATTCAG : AGACCCAAGATTTTGCGATCTAGATTGAATTATCAAGCAATAAATGTAGATACACTTCGGGCTCAGAATATGGAAGGATGGCCCTTCTTCAACCAG : GTTACTGCAGATTTGACCCCGCTGAATGCACAAAAGGTGGCAGTAAAGTTTGATTATTTCAAAATTGCTGGACTA : ATACCTATTAAAGCTCCTGGAAGAGCTAAAGGCGAGCTTGAAATTACTTACTTGGATGAAGAATTGAG : GGTATCAAGAGGTGATCTTGGCAACTTGTTCATTTTGAAAATGGTTGACCCTTCTTACAAGGTCCCTACTTGAGATTGCTACTATCAACTTTATAGAGTTACTAATTAGTGTCACATCTTATATTATAATATTATATGCCAAGTCTGTGCAAAGGATTCACAAGCATTTTCTCTCTTCAATTTAACTACTGTACAAAATTGCATTAAAAAACTTAAGTAATTTCAAACTTGTGTATATGCAGCTTTATCAAAATTTCTTGTCATAATCAACATGACCTAGTGTTGTGTACAACAACAAAACACATTTTTCTTCTGTTCATCTACTTAAT</gDNA_template>
            <first_frame> R  K  *  K  V  I  H  L  Q  H  S  H  G  L  I  L  T  I  P  S  I  N  T  Y  F  F  N  E  T  S  S  L  F  P  L  Y  R  K  S  S  S  S  F  P  *  L  Y  Q  P  F  S  S  Q  *  K  M  A  D  Q  R  F  F  L  P  F  F  L  Q  Q  E  D  Q  R  P  Y  T  H  *  T  R  A  S  S  S  H  *  T  S  *  S  W  R  *  R  H  S  S  R  P  A  D  N  *  S   : D  C  L  Q  T  *  S  L  Q  S  N  K  G  A  P  Q  L  N  S  A  *  W  K  M  G  T  Y  I  H  Y  I  K  V  Y  F  T  D  S   : E  T  Q  D  F  A  I  *  I  E  L  S  S  N  K  C  R  Y  T  S  G  S  E  Y  G  R  M  A  L  L  Q  P   : G  Y  C  R  F  D  P  A  E  C  T  K  G  G  S  K  V  *  L  F  Q  N  C  W  T   : N  T  Y  *  S  S  W  K  S  *  R  R  A  *  N  Y  L  L  G  *  R  I  E  :  G  I  K  R  *  S  W  Q  L  V  H  F  E  N  G  *  P  F  L  Q  G  P  Y  L  R  L  L  L  S  T  L  *  S  Y  *  L  V  S  H  L  I  L  *  Y  Y  M  P  S  L  C  K  G  F  T  S  I  F  S  L  Q  F  N  Y  C  T  K  L  H  *  K  T  *  V  I  S  N  L  C  I  C  S  F  I  K  I  S  C  H  N  Q  H  D  L  V  L  C  T  T  T  K  H  I  F  L  L  F  I  Y  L   </first_frame>
            <second_frame>  E  S  R  K  S  F  I  C  S  I  P  M  A  L  S  S  L  S  P  P  L  T  H  I  S  S  T  K  L  H  L  S  F  P  C  I  V  N  P  H  P  H  S  H  N  Y  T  N  L  S  P  L  N  K  K  W  Q  T  N  V  S  F  F  P  S  F  F  N  K  K  T  K  D  P  T  P  I  K  Q  E  L  L  Q  A  I  E  P  L  D  R  G  A  D  A  T  P  Q  D  Q  Q  I  I  D  Q  :  I  A  C  R  L  E  A  C  N  P  T  K  E  P  L  N  S  T  L  L  N  G  K  W  E  L  I  Y  T  T  S  K  S  I  L  Q  I  Q  :  R  P  K  I  L  R  S  R  L  N  Y  Q  A  I  N  V  D  T  L  R  A  Q  N  M  E  G  W  P  F  F  N  Q  :  V  T  A  D  L  T  P  L  N  A  Q  K  V  A  V  K  F  D  Y  F  K  I  A  G  L  :  I  P  I  K  A  P  G  R  A  K  G  E  L  E  I  T  Y  L  D  E  E  L  R :   V  S  R  G  D  L  G  N  L  F  I  L  K  M  V  D  P  S  Y  K  V  P  T  *  D  C  Y  Y  Q  L  Y  R  V  T  N  *  C  H  I  L  Y  Y  N  I  I  C  Q  V  C  A  K  D  S  Q  A  F  S  L  F  N  L  T  T  V  Q  N  C  I  K  K  L  K  *  F  Q  T  C  V  Y  A  A  L  S  K  F  L  V  I  I  N  M  T  *  C  C  V  Q  Q  Q  N  T  F  F  F  C  S  S  T  *  </second_frame>
            <third_frame>   K  V  E  S  H  S  F  A  A  F  P  W  P  Y  P  H  Y  P  L  H  *  H  I  F  L  Q  R  N  F  I  S  L  S  L  V  S  *  I  L  I  L  I  P  I  I  I  P  T  F  L  L  S  I  K  N  G  R  P  T  F  L  S  S  L  L  S  S  T  R  R  P  K  T  L  H  P  L  N  K  S  F  F  K  P  L  N  L  L  I  V  A  L  T  P  L  L  K  T  S  R  *  L  I  R :   L  L  A  D  L  K  L  A  I  Q  Q  R  S  P  S  T  Q  L  C  L  M  E  N  G  N  L  Y  T  L  H  Q  S  L  F  Y  R  F  R :   D  P  R  F  C  D  L  D  *  I  I  K  Q  *  M  *  I  H  F  G  L  R  I  W  K  D  G  P  S  S  T  R :   L  L  Q  I  *  P  R  *  M  H  K  R  W  Q  *  S  L  I  I  S  K  L  L  D  * :   Y  L  L  K  L  L  E  E  L  K  A  S  L  K  L  L  T  W  M  K  N  *   : G  Y  Q  E  V  I  L  A  T  C  S  F  *  K  W  L  T  L  L  T  R  S  L  L  E  I  A  T  I  N  F  I  E  L  L  I  S  V  T  S  Y  I  I  I  L  Y  A  K  S  V  Q  R  I  H  K  H  F  L  S  S  I  *  L  L  Y  K  I  A  L  K  N  L  S  N  F  K  L  V  Y  M  Q  L  Y  Q  N  F  L  S  *  S  T  *  P  S  V  V  Y  N  N  K  T  H  F  S  S  V  H  L  L  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0074N01.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14841" stop="15152"/>
                    <exon start="15250" stop="15363"/>
                    <exon start="20307" stop="20402"/>
                    <exon start="21697" stop="21771"/>
                    <exon start="22013" stop="22080"/>
                    <exon start="23137" stop="23209"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>735</number_coding_nucleotides>
                  <number_encoded_amino_acids>245</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESRKSFICSIPMALSSLSPPLTHISSTKLHLSFPCIVNPHPHSHNYTNLSPLNKKWQTNVSFFPSFFNKKTKDPTPIKQELLQAIEPLDRGADATPQDQQIIDQIACRLEACNPTKEPLNSTLLNGKWELIYTTSKSILQIQRPKILRSRLNYQAINVDTLRAQNMEGWPFFNQVTADLTPLNAQKVAVKFDYFKIAGLIPIKAPGRAKGELEITYLDEELRVSRGDLGNLFILKMVDPSYKVPT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="14840" e_stop="15152"/>
            <exon e_start="15250" e_stop="15665"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="14840" e_stop="15152" e_length="313"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="15153" i_stop="15249" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15250" e_stop="15665" e_length="416"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14840" stop="15152"/>
              <exon start="15250" stop="15363"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E367886" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14854" stop="15152"/>
              <exon start="15250" stop="15527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E207848" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14856" stop="15152"/>
              <exon start="15250" stop="15665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E379509" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AGAAAGTAGAAAGTCATTCATTTGCAGCATTCCCATGGCCTTATCCTCACTATCCCCTCCATTAACACATATTTCTTCAACGAAACTTCATCTCTCTTTCCCTTGTATCGTAAATCCTCATCCTCATTCCCATAATTATACCAACCTTTCTCCTCTCAATAAAAAATGGCAGACCAACGTTTCTTTCTTCCCTTCTTTCTTCAACAAGAAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCCATTGAACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAG : ATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAACTCTGCTTAATGGAAAATGGGAACTTATATACACTACATCAAAGTCTATTTTACAGATTCAGGTGAAAACTATAACCATCATTCAAGTGTTTTACTGAATGTCATGAAAATTATGCTTCTAGGTCCTTTAATGGAACTGTATACATTGTTAAAATTCGTACCAAGCTGGGTAAAATGTTGAGTTTGTGAATGTCACCATTCAACTGTATATACACATTTTATGAGTTTGTGAGAATCTATACGATGCTTTGAAAGGAAATGGAAATCTGTACAGGAGACGGGGAAGGACATTCAATACATATATCTATAGAGTCTATCAAAATTATAACAACTTTGGCTGCTTTGTATGGATTGAAACATGTCT</gDNA_template>
            <first_frame> R  K  *  K  V  I  H  L  Q  H  S  H  G  L  I  L  T  I  P  S  I  N  T  Y  F  F  N  E  T  S  S  L  F  P  L  Y  R  K  S  S  S  S  F  P  *  L  Y  Q  P  F  S  S  Q  *  K  M  A  D  Q  R  F  F  L  P  F  F  L  Q  Q  E  D  Q  R  P  Y  T  H  *  T  R  A  S  S  S  H  *  T  S  *  S  W  R  *  R  H  S  S  R  P  A  D  N  *  S   : D  C  L  Q  T  *  S  L  Q  S  N  K  G  A  P  Q  L  N  S  A  *  W  K  M  G  T  Y  I  H  Y  I  K  V  Y  F  T  D  S  G  E  N  Y  N  H  H  S  S  V  L  L  N  V  M  K  I  M  L  L  G  P  L  M  E  L  Y  T  L  L  K  F  V  P  S  W  V  K  C  *  V  C  E  C  H  H  S  T  V  Y  T  H  F  M  S  L  *  E  S  I  R  C  F  E  R  K  W  K  S  V  Q  E  T  G  K  D  I  Q  Y  I  Y  L  *  S  L  S  K  L  *  Q  L  W  L  L  C  M  D  *  N  M  S </first_frame>
            <second_frame>  E  S  R  K  S  F  I  C  S  I  P  M  A  L  S  S  L  S  P  P  L  T  H  I  S  S  T  K  L  H  L  S  F  P  C  I  V  N  P  H  P  H  S  H  N  Y  T  N  L  S  P  L  N  K  K  W  Q  T  N  V  S  F  F  P  S  F  F  N  K  K  T  K  D  P  T  P  I  K  Q  E  L  L  Q  A  I  E  P  L  D  R  G  A  D  A  T  P  Q  D  Q  Q  I  I  D  Q  :  I  A  C  R  L  E  A  C  N  P  T  K  E  P  L  N  S  T  L  L  N  G  K  W  E  L  I  Y  T  T  S  K  S  I  L  Q  I  Q  V  K  T  I  T  I  I  Q  V  F  Y  *  M  S  *  K  L  C  F  *  V  L  *  W  N  C  I  H  C  *  N  S  Y  Q  A  G  *  N  V  E  F  V  N  V  T  I  Q  L  Y  I  H  I  L  *  V  C  E  N  L  Y  D  A  L  K  G  N  G  N  L  Y  R  R  R  G  R  T  F  N  T  Y  I  Y  R  V  Y  Q  N  Y  N  N  F  G  C  F  V  W  I  E  T  C   </second_frame>
            <third_frame>   K  V  E  S  H  S  F  A  A  F  P  W  P  Y  P  H  Y  P  L  H  *  H  I  F  L  Q  R  N  F  I  S  L  S  L  V  S  *  I  L  I  L  I  P  I  I  I  P  T  F  L  L  S  I  K  N  G  R  P  T  F  L  S  S  L  L  S  S  T  R  R  P  K  T  L  H  P  L  N  K  S  F  F  K  P  L  N  L  L  I  V  A  L  T  P  L  L  K  T  S  R  *  L  I  R :   L  L  A  D  L  K  L  A  I  Q  Q  R  S  P  S  T  Q  L  C  L  M  E  N  G  N  L  Y  T  L  H  Q  S  L  F  Y  R  F  R  *  K  L  *  P  S  F  K  C  F  T  E  C  H  E  N  Y  A  S  R  S  F  N  G  T  V  Y  I  V  K  I  R  T  K  L  G  K  M  L  S  L  *  M  S  P  F  N  C  I  Y  T  F  Y  E  F  V  R  I  Y  T  M  L  *  K  E  M  E  I  C  T  G  D  G  E  G  H  S  I  H  I  S  I  E  S  I  K  I  I  T  T  L  A  A  L  Y  G  L  K  H  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0074N01.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14841" stop="15152"/>
                    <exon start="15250" stop="15399"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>459</number_coding_nucleotides>
                  <number_encoded_amino_acids>153</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ESRKSFICSIPMALSSLSPPLTHISSTKLHLSFPCIVNPHPHSHNYTNLSPLNKKWQTNVSFFPSFFNKKTKDPTPIKQELLQAIEPLDRGADATPQDQQIIDQIACRLEACNPTKEPLNSTLLNGKWELIYTTSKSILQIQVKTITIIQVFY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="4">
          <exon_coordinates>
            <exon e_start="14914" e_stop="15766"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.995"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="14914" e_stop="15766" e_length="853"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14914" stop="15766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E699666" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="4" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTCAACGAAACTTCATCTCTCTTTCCCTTGTATCGTAAATCCTCATCCTCATTCCCATAATTATACCAACCTTTCTCCTCTCAATAAAAAATGGCAGACCAACGTTTCTTTCTTCCCTTCTTTCTTCAACAAGAAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCCATTGAACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAGGTTTTGCTTCACCTCATTGCAATTATCCAGTTTAGGTTTAGTTTTCTGACTGATTGTGTGTTTCTTTTAGTTTCTCAACACAATGTTATTTGATTAGATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAACTCTGCTTAATGGAAAATGGGAACTTATATACACTACATCAAAGTCTATTTTACAGATTCAGGTGAAAACTATAACCATCATTCAAGTGTTTTACTGAATGTCATGAAAATTATGCTTCTAGGTCCTTTAATGGAACTGTATACATTGTTAAAATTCGTACCAAGCTGGGTAAAATGTTGAGTTTGTGAATGTCACCATTCAACTGTATATACACATTTTATGAGTTTGTGAGAATCTATACGATGCTTTGAAAGGAAATGGAAATCTGTACAGGAGACGGGGAAGGACATTCAATACATATATCTATAGAGTCTATCAAAATTATAACAACTTTGGCTGCTTTGTATGGATTGAAACATGTCTAGGTCACTAGAAAAATGCAATCATTCTCCCAGAAGTTGTACAAACAAAGGATGGGGAGACATTCCCACCAAAATTCCTCGAGACATTGCCACCAAAATTCC</gDNA_template>
            <first_frame> L  Q  R  N  F  I  S  L  S  L  V  S  *  I  L  I  L  I  P  I  I  I  P  T  F  L  L  S  I  K  N  G  R  P  T  F  L  S  S  L  L  S  S  T  R  R  P  K  T  L  H  P  L  N  K  S  F  F  K  P  L  N  L  L  I  V  A  L  T  P  L  L  K  T  S  R  *  L  I  R  F  C  F  T  S  L  Q  L  S  S  L  G  L  V  F  *  L  I  V  C  F  F  *  F  L  N  T  M  L  F  D  *  I  A  C  R  L  E  A  C  N  P  T  K  E  P  L  N  S  T  L  L  N  G  K  W  E  L  I  Y  T  T  S  K  S  I  L  Q  I  Q  V  K  T  I  T  I  I  Q  V  F  Y  *  M  S  *  K  L  C  F  *  V  L  *  W  N  C  I  H  C  *  N  S  Y  Q  A  G  *  N  V  E  F  V  N  V  T  I  Q  L  Y  I  H  I  L  *  V  C  E  N  L  Y  D  A  L  K  G  N  G  N  L  Y  R  R  R  G  R  T  F  N  T  Y  I  Y  R  V  Y  Q  N  Y  N  N  F  G  C  F  V  W  I  E  T  C  L  G  H  *  K  N  A  I  I  L  P  E  V  V  Q  T  K  D  G  E  T  F  P  P  K  F  L  E  T  L  P  P  K  F  </first_frame>
            <second_frame>  F  N  E  T  S  S  L  F  P  L  Y  R  K  S  S  S  S  F  P  *  L  Y  Q  P  F  S  S  Q  *  K  M  A  D  Q  R  F  F  L  P  F  F  L  Q  Q  E  D  Q  R  P  Y  T  H  *  T  R  A  S  S  S  H  *  T  S  *  S  W  R  *  R  H  S  S  R  P  A  D  N  *  S  G  F  A  S  P  H  C  N  Y  P  V  *  V  *  F  S  D  *  L  C  V  S  F  S  F  S  T  Q  C  Y  L  I  R  L  L  A  D  L  K  L  A  I  Q  Q  R  S  P  S  T  Q  L  C  L  M  E  N  G  N  L  Y  T  L  H  Q  S  L  F  Y  R  F  R  *  K  L  *  P  S  F  K  C  F  T  E  C  H  E  N  Y  A  S  R  S  F  N  G  T  V  Y  I  V  K  I  R  T  K  L  G  K  M  L  S  L  *  M  S  P  F  N  C  I  Y  T  F  Y  E  F  V  R  I  Y  T  M  L  *  K  E  M  E  I  C  T  G  D  G  E  G  H  S  I  H  I  S  I  E  S  I  K  I  I  T  T  L  A  A  L  Y  G  L  K  H  V  *  V  T  R  K  M  Q  S  F  S  Q  K  L  Y  K  Q  R  M  G  R  H  S  H  Q  N  S  S  R  H  C  H  Q  N  S </second_frame>
            <third_frame>   S  T  K  L  H  L  S  F  P  C  I  V  N  P  H  P  H  S  H  N  Y  T  N  L  S  P  L  N  K  K  W  Q  T  N  V  S  F  F  P  S  F  F  N  K  K  T  K  D  P  T  P  I  K  Q  E  L  L  Q  A  I  E  P  L  D  R  G  A  D  A  T  P  Q  D  Q  Q  I  I  D  Q  V  L  L  H  L  I  A  I  I  Q  F  R  F  S  F  L  T  D  C  V  F  L  L  V  S  Q  H  N  V  I  *  L  D  C  L  Q  T  *  S  L  Q  S  N  K  G  A  P  Q  L  N  S  A  *  W  K  M  G  T  Y  I  H  Y  I  K  V  Y  F  T  D  S  G  E  N  Y  N  H  H  S  S  V  L  L  N  V  M  K  I  M  L  L  G  P  L  M  E  L  Y  T  L  L  K  F  V  P  S  W  V  K  C  *  V  C  E  C  H  H  S  T  V  Y  T  H  F  M  S  L  *  E  S  I  R  C  F  E  R  K  W  K  S  V  Q  E  T  G  K  D  I  Q  Y  I  Y  L  *  S  L  S  K  L  *  Q  L  W  L  L  C  M  D  *  N  M  S  R  S  L  E  K  C  N  H  S  P  R  S  C  T  N  K  G  W  G  D  I  P  T  K  I  P  R  D  I  A  T  K  I   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0074N01.2" strand="+"/>
                <serials PGL_serial="2" AGS_serial="4" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14916" stop="15245"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>327</number_coding_nucleotides>
                  <number_encoded_amino_acids>109</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>STKLHLSFPCIVNPHPHSHNYTNLSPLNKKWQTNVSFFPSFFNKKTKDPTPIKQELLQAIEPLDRGADATPQDQQIIDQVLLHLIAIIQFRFSFLTDCVFLLVSQHNVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="45644" PGL_stop="45120"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45644" e_stop="45558"/>
            <exon e_start="45477" e_stop="45120"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.883" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="45644" e_stop="45558" e_length="87"/>
          </exon>
          <intron i_serial="1" don_prob="0.883" acc_prob="0.997">
            <gDNA_intron_boundary i_start="45557" i_stop="45478" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45477" e_stop="45120" e_length="358"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45644" stop="45558"/>
              <exon start="45477" stop="45120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303649" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45644" stop="45558"/>
              <exon start="45477" stop="45120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544083" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45644" stop="45558"/>
              <exon start="45477" stop="45120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E548984" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45643" stop="45558"/>
              <exon start="45477" stop="45120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303648" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGTGGATCCATGCTAGTAATTGGTTCAGCAGCTGGAGTAGCATTTATGGGAATGGAAAAAGTCGACTTCTTTTGGTATATGAGAAAG : GTTAGTGGTTTTGCTTTTGCTGGTTATGCTGCCGGTATTGCTTCGTATCTTGCAGTACATAATCTCGATATCTCACTCCCAACAGCTCTGGCTCAAATTCCTTTCCTTCATGGATCTTGATGTCCTTGGAGCTATCAGTAAATCTGATCGGTTGTGTATTCTCTGCTTCAAGTTAATGACCAGAACATATGAACACAAATCCAGAACCTTTAGTGGTGGAGATGAAAATGCCATATATCAATCTCTTTAGAACTACCAGTGTGTTGGCCTGGGTTGGGGATTAAAGCCCCACATAATGTAATTTATTGATTCTAATAGTTTAATAATGTAACTGTGGAGTAATACCTCCATCTTCAGA</gDNA_template>
            <first_frame> G  G  S  M  L  V  I  G  S  A  A  G  V  A  F  M  G  M  E  K  V  D  F  F  W  Y  M  R  K  :  V  S  G  F  A  F  A  G  Y  A  A  G  I  A  S  Y  L  A  V  H  N  L  D  I  S  L  P  T  A  L  A  Q  I  P  F  L  H  G  S  *  C  P  W  S  Y  Q  *  I  *  S  V  V  Y  S  L  L  Q  V  N  D  Q  N  I  *  T  Q  I  Q  N  L  *  W  W  R  *  K  C  H  I  S  I  S  L  E  L  P  V  C  W  P  G  L  G  I  K  A  P  H  N  V  I  Y  *  F  *  *  F  N  N  V  T  V  E  *  Y  L  H  L  Q  </first_frame>
            <second_frame>  V  D  P  C  *  *  L  V  Q  Q  L  E  *  H  L  W  E  W  K  K  S  T  S  F  G  I  *  E  R :   L  V  V  L  L  L  L  V  M  L  P  V  L  L  R  I  L  Q  Y  I  I  S  I  S  H  S  Q  Q  L  W  L  K  F  L  S  F  M  D  L  D  V  L  G  A  I  S  K  S  D  R  L  C  I  L  C  F  K  L  M  T  R  T  Y  E  H  K  S  R  T  F  S  G  G  D  E  N  A  I  Y  Q  S  L  *  N  Y  Q  C  V  G  L  G  W  G  L  K  P  H  I  M  *  F  I  D  S  N  S  L  I  M  *  L  W  S  N  T  S  I  F  R </second_frame>
            <third_frame>   W  I  H  A  S  N  W  F  S  S  W  S  S  I  Y  G  N  G  K  S  R  L  L  L  V  Y  E  K   : G  *  W  F  C  F  C  W  L  C  C  R  Y  C  F  V  S  C  S  T  *  S  R  Y  L  T  P  N  S  S  G  S  N  S  F  P  S  W  I  L  M  S  L  E  L  S  V  N  L  I  G  C  V  F  S  A  S  S  *  *  P  E  H  M  N  T  N  P  E  P  L  V  V  E  M  K  M  P  Y  I  N  L  F  R  T  T  S  V  L  A  W  V  G  D  *  S  P  T  *  C  N  L  L  I  L  I  V  *  *  C  N  C  G  V  I  P  P  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0074N01.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45562" stop="45558"/>
                    <exon start="45477" stop="45228"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERLVVLLLLVMLPVLLRILQYIISISHSQQLWLKFLSFMDLDVLGAISKSDRLCILCFKLMTRTYEHKSRTFSGGDENAIYQSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0074N01.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45644" stop="45558"/>
                    <exon start="45477" stop="45358"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GGSMLVIGSAAGVAFMGMEKVDFFWYMRKVSGFAFAGYAAGIASYLAVHNLDISLPTALAQIPFLHGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="51233" PGL_stop="45806"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51233" e_stop="51075"/>
            <exon e_start="50065" e_stop="49959"/>
            <exon e_start="48886" e_stop="48766"/>
            <exon e_start="46713" e_stop="46652"/>
            <exon e_start="46552" e_stop="46250"/>
            <exon e_start="45852" e_stop="45806"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.964" e_score="1.000"/>
          <exon-intron don_prob="0.781" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.978" e_score="1.000"/>
          <exon-intron don_prob="0.920" acc_prob="0.979" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="51233" e_stop="51075" e_length="159"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.964">
            <gDNA_intron_boundary i_start="51074" i_stop="50066" i_length="1009"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50065" e_stop="49959" e_length="107"/>
          </exon>
          <intron i_serial="2" don_prob="0.781" acc_prob="0.999">
            <gDNA_intron_boundary i_start="49958" i_stop="48887" i_length="1072"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48886" e_stop="48766" e_length="121"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.934">
            <gDNA_intron_boundary i_start="48765" i_stop="46714" i_length="2052"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46713" e_stop="46652" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.945" acc_prob="0.978">
            <gDNA_intron_boundary i_start="46651" i_stop="46553" i_length="99"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="46552" e_stop="46250" e_length="303"/>
          </exon>
          <intron i_serial="5" don_prob="0.920" acc_prob="0.979">
            <gDNA_intron_boundary i_start="46249" i_stop="45853" i_length="397"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="45852" e_stop="45806" e_length="47"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51233" stop="51075"/>
              <exon start="50065" stop="49959"/>
              <exon start="48886" stop="48766"/>
              <exon start="46713" stop="46652"/>
              <exon start="46552" stop="46495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E223744" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51188" stop="51075"/>
              <exon start="50065" stop="49959"/>
              <exon start="48886" stop="48766"/>
              <exon start="46713" stop="46652"/>
              <exon start="46552" stop="46495"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E224168" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51127" stop="51075"/>
              <exon start="50065" stop="49959"/>
              <exon start="48886" stop="48766"/>
              <exon start="46713" stop="46652"/>
              <exon start="46552" stop="46339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283324" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50061" stop="49959"/>
              <exon start="48886" stop="48766"/>
              <exon start="46713" stop="46652"/>
              <exon start="46552" stop="46328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E551315" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50061" stop="49959"/>
              <exon start="48886" stop="48766"/>
              <exon start="46713" stop="46652"/>
              <exon start="46552" stop="46328"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E688608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="50060" stop="49959"/>
              <exon start="48886" stop="48766"/>
              <exon start="46713" stop="46652"/>
              <exon start="46552" stop="46250"/>
              <exon start="45852" stop="45806"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252319" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTCTTTCCCAGTTGTCACATGCGACTGCTGAAGTTAGTGAAATAGTGTTCTTTTTGCTTGGTGCGATGACCATTGTTGAGATAGTTGATGCTCATCAGGGATTTAAGCTGGTTACAGACAACATCACTACTCGCAAGCCAATAACTCTGCTTTGGGTG : GTAGGTTTTGTGACTTTCTTCCTCAGTTCAATCCTTGACAATCTGACTTCTACAATTGTGATGGTCTCCTTACTGAGGAAACTGGCACCACCTTCAGAATACCGAAA : GCTTCTTGGCGCTGTTGTTGTTATAGCAGCAAATGCCGGTGGAGCATGGACTCCCATAGGTGATGTTACAACTACAATGCTCTGGATACACGGCCAAGTATCCACGTTACCAACGATGAAG : GATTTATTTCTACCGTCAGTTGTTTCTCTAGCTGTTCCTTTGGCTCTGCTGTCCCTTACAAG : TGAAGTGAATGGGAAAGGACAAAACTCCGCTGAGGTTCTGGCATCCGAACAGATGGCTCCTCGAGGACAGCTAGTTTTCGCGGTTGGACTTGGGGCTTTAGTGTTTGTACCAGTTTTCAAGGCCTTGACTGGCCTTCCACCGTACATGGGTATGCTGCTTGGACTGGGAGTTCTTTGGATAATCACAGATGCGATCCACTATGGAGAATCTGAAAGACAGCGGCTGAAAGTACCACAGGCTTTATCACGCATTGACACTCAAGGAGCTCTTTTCTTCCTTGGAATCCTATTGTCCGTTAGCAG : CCTGGAAGCAGCAGGTATTCTGCGAGAATTGGCAAATTACCTTGATG</gDNA_template>
            <first_frame> A  L  S  Q  L  S  H  A  T  A  E  V  S  E  I  V  F  F  L  L  G  A  M  T  I  V  E  I  V  D  A  H  Q  G  F  K  L  V  T  D  N  I  T  T  R  K  P  I  T  L  L  W  V  :  V  G  F  V  T  F  F  L  S  S  I  L  D  N  L  T  S  T  I  V  M  V  S  L  L  R  K  L  A  P  P  S  E  Y  R  K :   L  L  G  A  V  V  V  I  A  A  N  A  G  G  A  W  T  P  I  G  D  V  T  T  T  M  L  W  I  H  G  Q  V  S  T  L  P  T  M  K  :  D  L  F  L  P  S  V  V  S  L  A  V  P  L  A  L  L  S  L  T  S :   E  V  N  G  K  G  Q  N  S  A  E  V  L  A  S  E  Q  M  A  P  R  G  Q  L  V  F  A  V  G  L  G  A  L  V  F  V  P  V  F  K  A  L  T  G  L  P  P  Y  M  G  M  L  L  G  L  G  V  L  W  I  I  T  D  A  I  H  Y  G  E  S  E  R  Q  R  L  K  V  P  Q  A  L  S  R  I  D  T  Q  G  A  L  F  F  L  G  I  L  L  S  V  S  S :   L  E  A  A  G  I  L  R  E  L  A  N  Y  L  D  </first_frame>
            <second_frame>  L  F  P  S  C  H  M  R  L  L  K  L  V  K  *  C  S  F  C  L  V  R  *  P  L  L  R  *  L  M  L  I  R  D  L  S  W  L  Q  T  T  S  L  L  A  S  Q  *  L  C  F  G  W :   *  V  L  *  L  S  S  S  V  Q  S  L  T  I  *  L  L  Q  L  *  W  S  P  Y  *  G  N  W  H  H  L  Q  N  T  E   : S  F  L  A  L  L  L  L  *  Q  Q  M  P  V  E  H  G  L  P  *  V  M  L  Q  L  Q  C  S  G  Y  T  A  K  Y  P  R  Y  Q  R  *  R :   I  Y  F  Y  R  Q  L  F  L  *  L  F  L  W  L  C  C  P  L  Q   : V  K  *  M  G  K  D  K  T  P  L  R  F  W  H  P  N  R  W  L  L  E  D  S  *  F  S  R  L  D  L  G  L  *  C  L  Y  Q  F  S  R  P  *  L  A  F  H  R  T  W  V  C  C  L  D  W  E  F  F  G  *  S  Q  M  R  S  T  M  E  N  L  K  D  S  G  *  K  Y  H  R  L  Y  H  A  L  T  L  K  E  L  F  S  S  L  E  S  Y  C  P  L  A   : A  W  K  Q  Q  V  F  C  E  N  W  Q  I  T  L  M </second_frame>
            <third_frame>   S  F  P  V  V  T  C  D  C  *  S  *  *  N  S  V  L  F  A  W  C  D  D  H  C  *  D  S  *  C  S  S  G  I  *  A  G  Y  R  Q  H  H  Y  S  Q  A  N  N  S  A  L  G   : G  R  F  C  D  F  L  P  Q  F  N  P  *  Q  S  D  F  Y  N  C  D  G  L  L  T  E  E  T  G  T  T  F  R  I  P  K  :  A  S  W  R  C  C  C  Y  S  S  K  C  R  W  S  M  D  S  H  R  *  C  Y  N  Y  N  A  L  D  T  R  P  S  I  H  V  T  N  D  E   : G  F  I  S  T  V  S  C  F  S  S  C  S  F  G  S  A  V  P  Y  K  :  *  S  E  W  E  R  T  K  L  R  *  G  S  G  I  R  T  D  G  S  S  R  T  A  S  F  R  G  W  T  W  G  F  S  V  C  T  S  F  Q  G  L  D  W  P  S  T  V  H  G  Y  A  A  W  T  G  S  S  L  D  N  H  R  C  D  P  L  W  R  I  *  K  T  A  A  E  S  T  T  G  F  I  T  H  *  H  S  R  S  S  F  L  P  W  N  P  I  V  R  *  Q  :  P  G  S  S  R  Y  S  A  R  I  G  K  L  P  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0074N01.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51233" stop="51075"/>
                    <exon start="50065" stop="49959"/>
                    <exon start="48886" stop="48766"/>
                    <exon start="46713" stop="46652"/>
                    <exon start="46552" stop="46250"/>
                    <exon start="45852" stop="45807"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>798</number_coding_nucleotides>
                  <number_encoded_amino_acids>266</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ALSQLSHATAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPITLLWVVGFVTFFLSSILDNLTSTIVMVSLLRKLAPPSEYRKLLGAVVVIAANAGGAWTPIGDVTTTMLWIHGQVSTLPTMKDLFLPSVVSLAVPLALLSLTSEVNGKGQNSAEVLASEQMAPRGQLVFAVGLGALVFVPVFKALTGLPPYMGMLLGLGVLWIITDAIHYGESERQRLKVPQALSRIDTQGALFFLGILLSVSSLEAAGILRELANYLD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="46632" e_stop="46279"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.958"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.958">
            <gDNA_exon_boundary e_start="46632" e_stop="46279" e_length="354"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="46632" stop="46279"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E443852" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTGAAGAGCTTCTTGAATTTCGGAAATATTTTAAGAAATAGAGTGGAGATGAAACTATATTAGAAATTATTTGTGTTCAGTGAAGTGAATGGGAAAGGACAAAACTCCGCTGAGGTTCTGGCATCCGAACAGATGGCTCCTCGAGGACAGCTAGTTTTCGCGGTTGGACTTGGGGCTTTAGTGTTTGTACCAGTTTTCAAGGCCTTGACTGGCCTTCCACCGTACATGGGTATGCTGCTTGGACTGGGAGTTCTTTGGATAATCACAGATGCGATCCACTATGGAGAATCTGAAAGACAGCGGCTGAAAGTACCACAGGCTTTATCACGCATTGACACTCAAGGAGCTCTTTTC</gDNA_template>
            <first_frame> L  K  S  F  L  N  F  G  N  I  L  R  N  R  V  E  M  K  L  Y  *  K  L  F  V  F  S  E  V  N  G  K  G  Q  N  S  A  E  V  L  A  S  E  Q  M  A  P  R  G  Q  L  V  F  A  V  G  L  G  A  L  V  F  V  P  V  F  K  A  L  T  G  L  P  P  Y  M  G  M  L  L  G  L  G  V  L  W  I  I  T  D  A  I  H  Y  G  E  S  E  R  Q  R  L  K  V  P  Q  A  L  S  R  I  D  T  Q  G  A  L  F </first_frame>
            <second_frame>  *  R  A  S  *  I  S  E  I  F  *  E  I  E  W  R  *  N  Y  I  R  N  Y  L  C  S  V  K  *  M  G  K  D  K  T  P  L  R  F  W  H  P  N  R  W  L  L  E  D  S  *  F  S  R  L  D  L  G  L  *  C  L  Y  Q  F  S  R  P  *  L  A  F  H  R  T  W  V  C  C  L  D  W  E  F  F  G  *  S  Q  M  R  S  T  M  E  N  L  K  D  S  G  *  K  Y  H  R  L  Y  H  A  L  T  L  K  E  L  F   </second_frame>
            <third_frame>   E  E  L  L  E  F  R  K  Y  F  K  K  *  S  G  D  E  T  I  L  E  I  I  C  V  Q  *  S  E  W  E  R  T  K  L  R  *  G  S  G  I  R  T  D  G  S  S  R  T  A  S  F  R  G  W  T  W  G  F  S  V  C  T  S  F  Q  G  L  D  W  P  S  T  V  H  G  Y  A  A  W  T  G  S  S  L  D  N  H  R  C  D  P  L  W  R  I  *  K  T  A  A  E  S  T  T  G  F  I  T  H  *  H  S  R  S  S  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0074N01.2" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="46569" stop="46279"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>291</number_coding_nucleotides>
                  <number_encoded_amino_acids>97</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KLFVFSEVNGKGQNSAEVLASEQMAPRGQLVFAVGLGALVFVPVFKALTGLPPYMGMLLGLGVLWIITDAIHYGESERQRLKVPQALSRIDTQGALF</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="68728" PGL_stop="69376"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68728" e_stop="69376"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="68728" e_stop="69376" e_length="649"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68728" stop="69376"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E539761" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68729" stop="69113"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E284788" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGATCCACAGACAGAAACTGATATTCCAGAATCTATGACATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTTTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCTGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAACGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACT</gDNA_template>
            <first_frame> Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  S  T  D  R  N  *  Y  S  R  I  Y  D  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  F  *  F  *  K  M  V  C  R  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  L  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  N  V  S  T  W  R  V  G  G  R  D  I  H  D  </first_frame>
            <second_frame>  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  D  P  Q  T  E  T  D  I  P  E  S  M  T  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  S  D  F  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  *  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  T  F  L  H  G  E  L  E  E  E  I  Y  M  T </second_frame>
            <third_frame>   R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  I  H  R  Q  K  L  I  F  Q  N  L  *  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  P  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  P  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0074N01.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68729" stop="69274"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>543</number_coding_nucleotides>
                  <number_encoded_amino_acids>181</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSETGSLDKQVEFQVIQNESDLKEPEEEDQDPQTETDIPESMTSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDFEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="69387" PGL_stop="70184"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69387" e_stop="70184"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.967"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="69387" e_stop="70184" e_length="798"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69387" stop="70184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E343338" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTTTCCAAGTCCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGATATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCAGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTATCTTAGAGGTACATCTGACGTTGGTCAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> V  S  K  S  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  D  I  K  G  L  T  A  I  W  *  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  R  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  I  L  E  V  H  L  T  L  V  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </first_frame>
            <second_frame>  F  P  S  P  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  I  *  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  S  *  R  Y  I  *  R  W  S  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </second_frame>
            <third_frame>   F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  *  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  Q  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  Q  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0074N01.2" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69470" stop="70132"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAAQKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGQVILSAWLLAILIQTMLEMLTQEDR*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="76843" PGL_stop="76444"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76843" e_stop="76444"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.943"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.943">
            <gDNA_exon_boundary e_start="76843" e_stop="76444" e_length="400"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76843" stop="76616"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E261310" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76833" stop="76448"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262800" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76778" stop="76444"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E258205" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGACATGTTCCTTGCTGAAAATGGCTATAAAAGGAAGTCAATTTTTGATTTTTTAATCACTGAAAATTTTTTCTTTCTCTACATTTATTTTTCTCTCAAATAAAATCAAAGTGTCGATCGACTGAGTCTGTGTGACTTGTTGCTGTTCTTAAGTTCGTTGAAGTTAAAGAAGTTTGAGGTACCGCTATTTCTTTAACAGGTTTAATCCATTTTATCTTGGGAGAAATTAATCCATAACCTTGGATACAGTGAGGGGATTAAATTTCTTAAGGACACACAGTAGTTTCTGTAGACTCGGATTAATTCTTGTATTCTATATTATTTTCTACTTCATCTTATTTCTGTTTCTGTTTCTGTTTATTAACTTAATAAATACAAGTTATTGTAAGAATAACAGAAT</gDNA_template>
            <first_frame> R  H  V  P  C  *  K  W  L  *  K  E  V  N  F  *  F  F  N  H  *  K  F  F  L  S  L  H  L  F  F  S  Q  I  K  S  K  C  R  S  T  E  S  V  *  L  V  A  V  L  K  F  V  E  V  K  E  V  *  G  T  A  I  S  L  T  G  L  I  H  F  I  L  G  E  I  N  P  *  P  W  I  Q  *  G  D  *  I  S  *  G  H  T  V  V  S  V  D  S  D  *  F  L  Y  S  I  L  F  S  T  S  S  Y  F  C  F  C  F  C  L  L  T  *  *  I  Q  V  I  V  R  I  T  E  </first_frame>
            <second_frame>  D  M  F  L  A  E  N  G  Y  K  R  K  S  I  F  D  F  L  I  T  E  N  F  F  F  L  Y  I  Y  F  S  L  K  *  N  Q  S  V  D  R  L  S  L  C  D  L  L  L  F  L  S  S  L  K  L  K  K  F  E  V  P  L  F  L  *  Q  V  *  S  I  L  S  W  E  K  L  I  H  N  L  G  Y  S  E  G  I  K  F  L  K  D  T  Q  *  F  L  *  T  R  I  N  S  C  I  L  Y  Y  F  L  L  H  L  I  S  V  S  V  S  V  Y  *  L  N  K  Y  K  L  L  *  E  *  Q  N </second_frame>
            <third_frame>   T  C  S  L  L  K  M  A  I  K  G  S  Q  F  L  I  F  *  S  L  K  I  F  S  F  S  T  F  I  F  L  S  N  K  I  K  V  S  I  D  *  V  C  V  T  C  C  C  S  *  V  R  *  S  *  R  S  L  R  Y  R  Y  F  F  N  R  F  N  P  F  Y  L  G  R  N  *  S  I  T  L  D  T  V  R  G  L  N  F  L  R  T  H  S  S  F  C  R  L  G  L  I  L  V  F  Y  I  I  F  Y  F  I  L  F  L  F  L  F  L  F  I  N  L  I  N  T  S  Y  C  K  N  N  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0074N01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="-" PGL_start="92580" PGL_stop="88506"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92580" e_stop="92545"/>
            <exon e_start="91199" e_stop="90261"/>
            <exon e_start="89394" e_stop="89323"/>
            <exon e_start="89228" e_stop="89199"/>
            <exon e_start="88860" e_stop="88506"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.845" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.983" e_score="0.935"/>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.853" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="92580" e_stop="92545" e_length="36"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.845">
            <gDNA_intron_boundary i_start="92544" i_stop="91200" i_length="1345"/>
          </intron>
          <exon e_serial="2" e_score="0.935">
            <gDNA_exon_boundary e_start="91199" e_stop="90261" e_length="939"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.983">
            <gDNA_intron_boundary i_start="90260" i_stop="89395" i_length="866"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="89394" e_stop="89323" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="89322" i_stop="89229" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="89228" e_stop="89199" e_length="30"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.853">
            <gDNA_intron_boundary i_start="89198" i_stop="88861" i_length="338"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="88860" e_stop="88506" e_length="355"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92580" stop="92545"/>
              <exon start="91199" stop="90710"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E472641" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92574" stop="92545"/>
              <exon start="91199" stop="90525"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E479830" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92574" stop="92545"/>
              <exon start="91199" stop="90627"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614250" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92566" stop="92545"/>
              <exon start="91199" stop="90876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E273844" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92563" stop="92545"/>
              <exon start="91199" stop="90861"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E482207" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92562" stop="92545"/>
              <exon start="91199" stop="90770"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E300774" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91199" stop="90436"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E576591" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91199" stop="90554"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E574717" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91199" stop="90575"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487197" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91179" stop="90702"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E272014" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90827" stop="90337"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E365899" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90639" stop="90261"/>
              <exon start="89394" stop="89323"/>
              <exon start="89228" stop="89199"/>
              <exon start="88860" stop="88506"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90476" stop="90261"/>
              <exon start="89394" stop="89323"/>
              <exon start="89228" stop="89199"/>
              <exon start="88860" stop="88511"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E321641" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90384" stop="90261"/>
              <exon start="89394" stop="89323"/>
              <exon start="89228" stop="89199"/>
              <exon start="88860" stop="88522"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E429844" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90296" stop="90261"/>
              <exon start="89394" stop="89323"/>
              <exon start="89228" stop="89199"/>
              <exon start="88860" stop="88542"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274010" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89367" stop="89323"/>
              <exon start="89228" stop="89199"/>
              <exon start="88860" stop="88534"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E418682" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="89363" stop="89323"/>
              <exon start="89228" stop="89199"/>
              <exon start="88860" stop="88527"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E714797" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCTTACTCCTTGCAAAACTTGTACCTGCCAAAACGG : ATTTTGTTTGTCGTAACCATGGGATCTTACCTGAACTTCAAGAACTTTGCTGACACATCACAACCAGAGAGCAGTGGGAATAATAGTAATTCTTTTTTGGCCCAACAATCTTCCATATACTCGTTTACCTTTGATGAGCTGCAAAATACATGTGGACTTGGAAAAGATTTTGGGTCGATGAATATGGATGACCTCTTGAAGAACATTGAAGAGTCTCAAGCGTTGTCATCTTCTGCTGCTTTAGGGGGTAATTTGCAGAGACAGGGTTCTTTGACACTGCCTAGGACACTTAGTCAGAAAACTGTAGATGAAGTATGGAGAGACTTTCAGAAAGAGAGTGTTGTTGCTAATGATGCAAGTGGGACTGGAGGATCAAACTTTGGGCAGCGGGAATCTACCTTGGGAGAAATGACATTAGAAGAGTTTTTGGTTAGAGCAGGGGCCGTGCAAGAAGATATGCAACCAGCTGGATACTCAAATGATGTTACATTTGCTAGTGGTTTCACTCAACCTAGTTGTAGTGTGACCATAGCATTTCAACAAGCAACCCAAAACCCTGGACATCAAATTGCAGCGAATAACATATTTAATGTGGTCAGTACCACCACGTCTTCACCACAGCAGCCCCTTTTTCCCAAACAAACAACTGTGGAATTTGCATCACCCATGCAATTAGGGAGCCCAGGGAAAAGGCTTCCCATGTCTAATCCGTCTGCAAATACTAGTAGTGTCATGCAGGGTGGTGTTATGACCATGCCAGTAAAAGGAGTATCCCCTGGAAATCTTGATACATCTTCTCTTTCACCTTCACCTTATGCATGTGGTGAAGGTGGAAGAGGAAGGAGATCATGCACCTCTTTTGAAAAAGTTGTTGAGAGAAGGCGTAAGAGGATGATAAAGAACAGGGAGTCTGCGGCCAGATCAAGGGATCGGAAGCAG : GCATATACTTTAGAGTTGGAAGCTGAAGTAGCAAAGCTTAAAGAAATTAAGCAAGAGTTGCAGAAGAAACAG : GCTGAATTTATCGAGAAGCAGAAAAATCAG : TTATTGGAAAAGATGAATGTGCCATGGGAAAATAAACTAATATGCTTGCGAAGGACAGTGACGGGACCTTGGTAGTCAGTAGAAGAGCAAATTCCCGAGTAAACACTCGGAGAATTGGTAGACAGGAGATTGAAGTGAAATAGCTTTTCCTTCCTCTTTTTTGTTTCAACAAACAAGTTCAGAGCCTGCTCCTCGACCCTCCTCCCAGCCTGTGAATTAAAATATGTTCTAATTCACATATGTTGGTCACAGGATAGATAACTTTATGTATCGACTATAGTACAGGACAGGTGCTGTGTACCTGTACGTTATGTAAACAATGTTCTTGCATAAAGTTTCCTCATGTGCTTTTTTT</gDNA_template>
            <first_frame> A  Y  S  L  Q  N  L  Y  L  P  K  R  :  I  L  F  V  V  T  M  G  S  Y  L  N  F  K  N  F  A  D  T  S  Q  P  E  S  S  G  N  N  S  N  S  F  L  A  Q  Q  S  S  I  Y  S  F  T  F  D  E  L  Q  N  T  C  G  L  G  K  D  F  G  S  M  N  M  D  D  L  L  K  N  I  E  E  S  Q  A  L  S  S  S  A  A  L  G  G  N  L  Q  R  Q  G  S  L  T  L  P  R  T  L  S  Q  K  T  V  D  E  V  W  R  D  F  Q  K  E  S  V  V  A  N  D  A  S  G  T  G  G  S  N  F  G  Q  R  E  S  T  L  G  E  M  T  L  E  E  F  L  V  R  A  G  A  V  Q  E  D  M  Q  P  A  G  Y  S  N  D  V  T  F  A  S  G  F  T  Q  P  S  C  S  V  T  I  A  F  Q  Q  A  T  Q  N  P  G  H  Q  I  A  A  N  N  I  F  N  V  V  S  T  T  T  S  S  P  Q  Q  P  L  F  P  K  Q  T  T  V  E  F  A  S  P  M  Q  L  G  S  P  G  K  R  L  P  M  S  N  P  S  A  N  T  S  S  V  M  Q  G  G  V  M  T  M  P  V  K  G  V  S  P  G  N  L  D  T  S  S  L  S  P  S  P  Y  A  C  G  E  G  G  R  G  R  R  S  C  T  S  F  E  K  V  V  E  R  R  R  K  R  M  I  K  N  R  E  S  A  A  R  S  R  D  R  K  Q  :  A  Y  T  L  E  L  E  A  E  V  A  K  L  K  E  I  K  Q  E  L  Q  K  K  Q  :  A  E  F  I  E  K  Q  K  N  Q  :  L  L  E  K  M  N  V  P  W  E  N  K  L  I  C  L  R  R  T  V  T  G  P  W  *  S  V  E  E  Q  I  P  E  *  T  L  G  E  L  V  D  R  R  L  K  *  N  S  F  S  F  L  F  F  V  S  T  N  K  F  R  A  C  S  S  T  L  L  P  A  C  E  L  K  Y  V  L  I  H  I  C  W  S  Q  D  R  *  L  Y  V  S  T  I  V  Q  D  R  C  C  V  P  V  R  Y  V  N  N  V  L  A  *  S  F  L  M  C  F  F  </first_frame>
            <second_frame>  L  T  P  C  K  T  C  T  C  Q  N  G :   F  C  L  S  *  P  W  D  L  T  *  T  S  R  T  L  L  T  H  H  N  Q  R  A  V  G  I  I  V  I  L  F  W  P  N  N  L  P  Y  T  R  L  P  L  M  S  C  K  I  H  V  D  L  E  K  I  L  G  R  *  I  W  M  T  S  *  R  T  L  K  S  L  K  R  C  H  L  L  L  L  *  G  V  I  C  R  D  R  V  L  *  H  C  L  G  H  L  V  R  K  L  *  M  K  Y  G  E  T  F  R  K  R  V  L  L  L  M  M  Q  V  G  L  E  D  Q  T  L  G  S  G  N  L  P  W  E  K  *  H  *  K  S  F  W  L  E  Q  G  P  C  K  K  I  C  N  Q  L  D  T  Q  M  M  L  H  L  L  V  V  S  L  N  L  V  V  V  *  P  *  H  F  N  K  Q  P  K  T  L  D  I  K  L  Q  R  I  T  Y  L  M  W  S  V  P  P  R  L  H  H  S  S  P  F  F  P  N  K  Q  L  W  N  L  H  H  P  C  N  *  G  A  Q  G  K  G  F  P  C  L  I  R  L  Q  I  L  V  V  S  C  R  V  V  L  *  P  C  Q  *  K  E  Y  P  L  E  I  L  I  H  L  L  F  H  L  H  L  M  H  V  V  K  V  E  E  E  G  D  H  A  P  L  L  K  K  L  L  R  E  G  V  R  G  *  *  R  T  G  S  L  R  P  D  Q  G  I  G  S  R :   H  I  L  *  S  W  K  L  K  *  Q  S  L  K  K  L  S  K  S  C  R  R  N  R :   L  N  L  S  R  S  R  K  I  S :   Y  W  K  R  *  M  C  H  G  K  I  N  *  Y  A  C  E  G  Q  *  R  D  L  G  S  Q  *  K  S  K  F  P  S  K  H  S  E  N  W  *  T  G  D  *  S  E  I  A  F  P  S  S  F  L  F  Q  Q  T  S  S  E  P  A  P  R  P  S  S  Q  P  V  N  *  N  M  F  *  F  T  Y  V  G  H  R  I  D  N  F  M  Y  R  L  *  Y  R  T  G  A  V  Y  L  Y  V  M  *  T  M  F  L  H  K  V  S  S  C  A  F  F </second_frame>
            <third_frame>   L  L  L  A  K  L  V  P  A  K  T   : D  F  V  C  R  N  H  G  I  L  P  E  L  Q  E  L  C  *  H  I  T  T  R  E  Q  W  E  *  *  *  F  F  F  G  P  T  I  F  H  I  L  V  Y  L  *  *  A  A  K  Y  M  W  T  W  K  R  F  W  V  D  E  Y  G  *  P  L  E  E  H  *  R  V  S  S  V  V  I  F  C  C  F  R  G  *  F  A  E  T  G  F  F  D  T  A  *  D  T  *  S  E  N  C  R  *  S  M  E  R  L  S  E  R  E  C  C  C  *  *  C  K  W  D  W  R  I  K  L  W  A  A  G  I  Y  L  G  R  N  D  I  R  R  V  F  G  *  S  R  G  R  A  R  R  Y  A  T  S  W  I  L  K  *  C  Y  I  C  *  W  F  H  S  T  *  L  *  C  D  H  S  I  S  T  S  N  P  K  P  W  T  S  N  C  S  E  *  H  I  *  C  G  Q  Y  H  H  V  F  T  T  A  A  P  F  S  Q  T  N  N  C  G  I  C  I  T  H  A  I  R  E  P  R  E  K  A  S  H  V  *  S  V  C  K  Y  *  *  C  H  A  G  W  C  Y  D  H  A  S  K  R  S  I  P  W  K  S  *  Y  I  F  S  F  T  F  T  L  C  M  W  *  R  W  K  R  K  E  I  M  H  L  F  *  K  S  C  *  E  K  A  *  E  D  D  K  E  Q  G  V  C  G  Q  I  K  G  S  E  A   : G  I  Y  F  R  V  G  S  *  S  S  K  A  *  R  N  *  A  R  V  A  E  E  T   : G  *  I  Y  R  E  A  E  K  S   : V  I  G  K  D  E  C  A  M  G  K  *  T  N  M  L  A  K  D  S  D  G  T  L  V  V  S  R  R  A  N  S  R  V  N  T  R  R  I  G  R  Q  E  I  E  V  K  *  L  F  L  P  L  F  C  F  N  K  Q  V  Q  S  L  L  L  D  P  P  P  S  L  *  I  K  I  C  S  N  S  H  M  L  V  T  G  *  I  T  L  C  I  D  Y  S  T  G  Q  V  L  C  T  C  T  L  C  K  Q  C  S  C  I  K  F  P  H  V  L  F   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0074N01.2" strand="-"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92580" stop="92545"/>
                    <exon start="91199" stop="90261"/>
                    <exon start="89394" stop="89323"/>
                    <exon start="89228" stop="89199"/>
                    <exon start="88860" stop="88786"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1149</number_coding_nucleotides>
                  <number_encoded_amino_acids>383</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AYSLQNLYLPKRILFVVTMGSYLNFKNFADTSQPESSGNNSNSFLAQQSSIYSFTFDELQNTCGLGKDFGSMNMDDLLKNIEESQALSSSAALGGNLQRQGSLTLPRTLSQKTVDEVWRDFQKESVVANDASGTGGSNFGQRESTLGEMTLEEFLVRAGAVQEDMQPAGYSNDVTFASGFTQPSCSVTIAFQQATQNPGHQIAANNIFNVVSTTTSSPQQPLFPKQTTVEFASPMQLGSPGKRLPMSNPSANTSSVMQGGVMTMPVKGVSPGNLDTSSLSPSPYACGEGGRGRRSCTSFEKVVERRRKRMIKNRESAARSRDRKQAYTLELEAEVAKLKEIKQELQKKQAEFIEKQKNQLLEKMNVPWENKLICLRRTVTGPW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="91920" e_stop="91214"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.999"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.999">
            <gDNA_exon_boundary e_start="91920" e_stop="91214" e_length="707"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91920" stop="91214"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E537614" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="91919" stop="91381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E266512" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTGGACTTGAAATGAGTTTGAAGCAAAGATGGATCTACGGTGTAGCGTATCCCCTCAACAATTAGGTATTTTTTTTAAAAGAAAAATTATGTGTATATATAGATTGTGGATCTCCGAACATAAGATTAAACATTGGCTCAGTGGTTGAGGAATTCAAAATTCGGTTAGAGGTTTCAAGTTTGAAGCTCAAACACTACATTTTTATTTTTCGAATCCCCTTAGTCAAAATCATGGATCCGCCACGGGTTTGAAGAATGTTAATTGGTGCTAATTTTTTTAAATCTAAATGTGTACAAAAGGTGGTGGACTGAATCAGGTCAAACCATTAAATATAGATCTAGTTTGTATTTCATTCTCTCCATCATTGAGGTATTATAATCTGTGTTTAACCGAGATCTGCCTAATCATGATATTTCAGTTTTTCTGAGCTGTAATGAGCAAGATGTTAAGTGTTGTATTTTTCTTTACTGTTCTAATGTCCTTAAAGTGATCATCTTCAAGTCGGCAGTGAAGATTATATGTTTGAGCTTGTACGTAATCACCAATGTTGTAGCATTTTGTTAGGAAATGATTAAAATTCTTTGGAGGTGGTATACAATATTTGTTTATTGGTGAACATTCTATTATATGTTGTTGGACTACACCGAAATATAAAAATTGATTCCCGTGGTCGACTTCTACTGTTGTTTCTTACTGTCTTACTAATG</gDNA_template>
            <first_frame> L  D  L  K  *  V  *  S  K  D  G  S  T  V  *  R  I  P  S  T  I  R  Y  F  F  *  K  K  N  Y  V  Y  I  *  I  V  D  L  R  T  *  D  *  T  L  A  Q  W  L  R  N  S  K  F  G  *  R  F  Q  V  *  S  S  N  T  T  F  L  F  F  E  S  P  *  S  K  S  W  I  R  H  G  F  E  E  C  *  L  V  L  I  F  L  N  L  N  V  Y  K  R  W  W  T  E  S  G  Q  T  I  K  Y  R  S  S  L  Y  F  I  L  S  I  I  E  V  L  *  S  V  F  N  R  D  L  P  N  H  D  I  S  V  F  L  S  C  N  E  Q  D  V  K  C  C  I  F  L  Y  C  S  N  V  L  K  V  I  I  F  K  S  A  V  K  I  I  C  L  S  L  Y  V  I  T  N  V  V  A  F  C  *  E  M  I  K  I  L  W  R  W  Y  T  I  F  V  Y  W  *  T  F  Y  Y  M  L  L  D  Y  T  E  I  *  K  L  I  P  V  V  D  F  Y  C  C  F  L  L  S  Y  *   </first_frame>
            <second_frame>  W  T  *  N  E  F  E  A  K  M  D  L  R  C  S  V  S  P  Q  Q  L  G  I  F  F  K  R  K  I  M  C  I  Y  R  L  W  I  S  E  H  K  I  K  H  W  L  S  G  *  G  I  Q  N  S  V  R  G  F  K  F  E  A  Q  T  L  H  F  Y  F  S  N  P  L  S  Q  N  H  G  S  A  T  G  L  K  N  V  N  W  C  *  F  F  *  I  *  M  C  T  K  G  G  G  L  N  Q  V  K  P  L  N  I  D  L  V  C  I  S  F  S  P  S  L  R  Y  Y  N  L  C  L  T  E  I  C  L  I  M  I  F  Q  F  F  *  A  V  M  S  K  M  L  S  V  V  F  F  F  T  V  L  M  S  L  K  *  S  S  S  S  R  Q  *  R  L  Y  V  *  A  C  T  *  S  P  M  L  *  H  F  V  R  K  *  L  K  F  F  G  G  G  I  Q  Y  L  F  I  G  E  H  S  I  I  C  C  W  T  T  P  K  Y  K  N  *  F  P  W  S  T  S  T  V  V  S  Y  C  L  T  N  </second_frame>
            <third_frame>   G  L  E  M  S  L  K  Q  R  W  I  Y  G  V  A  Y  P  L  N  N  *  V  F  F  L  K  E  K  L  C  V  Y  I  D  C  G  S  P  N  I  R  L  N  I  G  S  V  V  E  E  F  K  I  R  L  E  V  S  S  L  K  L  K  H  Y  I  F  I  F  R  I  P  L  V  K  I  M  D  P  P  R  V  *  R  M  L  I  G  A  N  F  F  K  S  K  C  V  Q  K  V  V  D  *  I  R  S  N  H  *  I  *  I  *  F  V  F  H  S  L  H  H  *  G  I  I  I  C  V  *  P  R  S  A  *  S  *  Y  F  S  F  S  E  L  *  *  A  R  C  *  V  L  Y  F  S  L  L  F  *  C  P  *  S  D  H  L  Q  V  G  S  E  D  Y  M  F  E  L  V  R  N  H  Q  C  C  S  I  L  L  G  N  D  *  N  S  L  E  V  V  Y  N  I  C  L  L  V  N  I  L  L  Y  V  V  G  L  H  R  N  I  K  I  D  S  R  G  R  L  L  L  L  F  L  T  V  L  L  M </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0074N01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="+" PGL_start="120698" PGL_stop="121567"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="120698" e_stop="120797"/>
            <exon e_start="120872" e_stop="121166"/>
            <exon e_start="121248" e_stop="121316"/>
            <exon e_start="121407" e_stop="121567"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.842" acc_prob="0.993" e_score="0.920"/>
          <exon-intron don_prob="0.963" acc_prob="1.000" e_score="0.932"/>
          <exon-intron don_prob="0.998" acc_prob="0.708" e_score="0.913"/>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.920">
            <gDNA_exon_boundary e_start="120698" e_stop="120797" e_length="100"/>
          </exon>
          <intron i_serial="1" don_prob="0.842" acc_prob="0.993">
            <gDNA_intron_boundary i_start="120798" i_stop="120871" i_length="74"/>
          </intron>
          <exon e_serial="2" e_score="0.932">
            <gDNA_exon_boundary e_start="120872" e_stop="121166" e_length="295"/>
          </exon>
          <intron i_serial="2" don_prob="0.963" acc_prob="1.000">
            <gDNA_intron_boundary i_start="121167" i_stop="121247" i_length="81"/>
          </intron>
          <exon e_serial="3" e_score="0.913">
            <gDNA_exon_boundary e_start="121248" e_stop="121316" e_length="69"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.708">
            <gDNA_intron_boundary i_start="121317" i_stop="121406" i_length="90"/>
          </intron>
          <exon e_serial="4" e_score="0.925">
            <gDNA_exon_boundary e_start="121407" e_stop="121567" e_length="161"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="120698" stop="120797"/>
              <exon start="120872" stop="121166"/>
              <exon start="121248" stop="121316"/>
              <exon start="121407" stop="121567"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608581" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACTACATTTCATGCAATGTGTGCTCGAAGAAGATTTAACCAACACATAGTATTTATCGATGCCACAATTGCAATAAAGATTGCAAATTTCCTTTGGTCAG : GTACAAGATACACCTAAAAGTGACAGATAGGACCGGAGACACTACTTTTATCTTATTTAATGCGGTGGCTGAGAAACTCCTTGATACATCAGCTCAAAAGTTGTTCAACAAGCTTACTACAACTAACAATGATGCGCCTGTCCAAGTCCAAAGCCTTTGAGGGAAAGAATTTGTTTTTAAAATGAGATTAAATCACTATAATTTGAAAGAAGGTCTTGAGAATTTTACAATATCAAAGTGTTGGATTCAAGATGATAATTTGGAAGTACAATACAAACTAAGGAAAGAAGAAAAG : GGGAAGAACTTATCCAAAAATGAAACTGACCCAAAAGATCAGGAAACCAACGGATTGACCAAACAGATG : AACAATCAGGTATCTGTTGATGTGTTGTTGACTGACTTGGAAGATTATGAGGACGAAGTAAATGTAACTAATGGTGCTAAGAGTAGAAAACGAAGAAACCTAATCATAGATGATGAGGAATTAAGCGTTCAAGGCACAAATAAGGTCAAGAAGTAAAGGGA</gDNA_template>
            <first_frame> T  T  F  H  A  M  C  A  R  R  R  F  N  Q  H  I  V  F  I  D  A  T  I  A  I  K  I  A  N  F  L  W  S   : G  T  R  Y  T  *  K  *  Q  I  G  P  E  T  L  L  L  S  Y  L  M  R  W  L  R  N  S  L  I  H  Q  L  K  S  C  S  T  S  L  L  Q  L  T  M  M  R  L  S  K  S  K  A  F  E  G  K  N  L  F  L  K  *  D  *  I  T  I  I  *  K  K  V  L  R  I  L  Q  Y  Q  S  V  G  F  K  M  I  I  W  K  Y  N  T  N  *  G  K  K  K  R :   G  R  T  Y  P  K  M  K  L  T  Q  K  I  R  K  P  T  D  *  P  N  R  * :   T  I  R  Y  L  L  M  C  C  *  L  T  W  K  I  M  R  T  K  *  M  *  L  M  V  L  R  V  E  N  E  E  T  *  S  *  M  M  R  N  *  A  F  K  A  Q  I  R  S  R  S  K  G  </first_frame>
            <second_frame>  L  H  F  M  Q  C  V  L  E  E  D  L  T  N  T  *  Y  L  S  M  P  Q  L  Q  *  R  L  Q  I  S  F  G  Q  :  V  Q  D  T  P  K  S  D  R  *  D  R  R  H  Y  F  Y  L  I  *  C  G  G  *  E  T  P  *  Y  I  S  S  K  V  V  Q  Q  A  Y  Y  N  *  Q  *  C  A  C  P  S  P  K  P  L  R  E  R  I  C  F  *  N  E  I  K  S  L  *  F  E  R  R  S  *  E  F  Y  N  I  K  V  L  D  S  R  *  *  F  G  S  T  I  Q  T  K  E  R  R  K   : G  E  E  L  I  Q  K  *  N  *  P  K  R  S  G  N  Q  R  I  D  Q  T  D   : E  Q  S  G  I  C  *  C  V  V  D  *  L  G  R  L  *  G  R  S  K  C  N  *  W  C  *  E  *  K  T  K  K  P  N  H  R  *  *  G  I  K  R  S  R  H  K  *  G  Q  E  V  K  G </second_frame>
            <third_frame>   Y  I  S  C  N  V  C  S  K  K  I  *  P  T  H  S  I  Y  R  C  H  N  C  N  K  D  C  K  F  P  L  V  R :   Y  K  I  H  L  K  V  T  D  R  T  G  D  T  T  F  I  L  F  N  A  V  A  E  K  L  L  D  T  S  A  Q  K  L  F  N  K  L  T  T  T  N  N  D  A  P  V  Q  V  Q  S  L  *  G  K  E  F  V  F  K  M  R  L  N  H  Y  N  L  K  E  G  L  E  N  F  T  I  S  K  C  W  I  Q  D  D  N  L  E  V  Q  Y  K  L  R  K  E  E  K  :  G  K  N  L  S  K  N  E  T  D  P  K  D  Q  E  T  N  G  L  T  K  Q  M  :  N  N  Q  V  S  V  D  V  L  L  T  D  L  E  D  Y  E  D  E  V  N  V  T  N  G  A  K  S  R  K  R  R  N  L  I  I  D  D  E  E  L  S  V  Q  G  T  N  K  V  K  K  *  R   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0074N01.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="121032" stop="121166"/>
                    <exon start="121248" stop="121316"/>
                    <exon start="121407" stop="121562"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>357</number_coding_nucleotides>
                  <number_encoded_amino_acids>119</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GKEFVFKMRLNHYNLKEGLENFTISKCWIQDDNLEVQYKLRKEEKGKNLSKNETDPKDQETNGLTKQMNNQVSVDVLLTDLEDYEDEVNVTNGAKSRKRRNLIIDDEELSVQGTNKVKK*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0074N01.2" strand="+"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="120736" stop="120797"/>
                    <exon start="120872" stop="121031"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PTHSIYRCHNCNKDCKFPLVRYKIHLKVTDRTGDTTFILFNAVAEKLLDTSAQKLFNKLTTTNNDAPVQVQSL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="126848" PGL_stop="126275"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="126848" e_stop="126275"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.951"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.951">
            <gDNA_exon_boundary e_start="126848" e_stop="126275" e_length="574"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="126848" stop="126275"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392668" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAATTCCTTTGGCCAAGAGATGTTGAAGCTGCATAGATTATTTGTATTGTACCTATTACCATCAACCAAGGAGAAAATATATAATTGGGCATGACATAATAATTTCATATTGATTCGTATTAATTCATACGCTCCCATTTTTAATAAGATTCCATCTATAAGCATACAAGTAATGTAATGTGCTTCTCCAAGGATATCTGGTAACTATGTGTGTAGGGGGATAATGGGCGATTTGACAGCAAAAGCAATAAAAAATCCAATATAGAAGATTATTTCTAAAACCACGAGATATGACTGATTAACTGATGTTTCAAAATTTAATGTTGGTTCATTAGAACCATATAAAGCAACACCCTAAACTCCCATTAAGAGAAAAACGGAACCCCCCGCCGTGTACAAAATAAATTTTGTAGCTAAGTACAGACGTTTCTTTCCTCCCCACATGGCTAGAAGTAGATAAACAACAATTAATTATAACTCCCACATGATGAAAAAAAGTAAAAGGTCCCGAGACGAAAATGATCCAATTTGACCATTGTAAATTGCTAACATGAAAAAATGAAATAATCTAG</gDNA_template>
            <first_frame> L  N  S  F  G  Q  E  M  L  K  L  H  R  L  F  V  L  Y  L  L  P  S  T  K  E  K  I  Y  N  W  A  *  H  N  N  F  I  L  I  R  I  N  S  Y  A  P  I  F  N  K  I  P  S  I  S  I  Q  V  M  *  C  A  S  P  R  I  S  G  N  Y  V  C  R  G  I  M  G  D  L  T  A  K  A  I  K  N  P  I  *  K  I  I  S  K  T  T  R  Y  D  *  L  T  D  V  S  K  F  N  V  G  S  L  E  P  Y  K  A  T  P  *  T  P  I  K  R  K  T  E  P  P  A  V  Y  K  I  N  F  V  A  K  Y  R  R  F  F  P  P  H  M  A  R  S  R  *  T  T  I  N  Y  N  S  H  M  M  K  K  S  K  R  S  R  D  E  N  D  P  I  *  P  L  *  I  A  N  M  K  K  *  N  N  L  </first_frame>
            <second_frame>  *  I  P  L  A  K  R  C  *  S  C  I  D  Y  L  Y  C  T  Y  Y  H  Q  P  R  R  K  Y  I  I  G  H  D  I  I  I  S  Y  *  F  V  L  I  H  T  L  P  F  L  I  R  F  H  L  *  A  Y  K  *  C  N  V  L  L  Q  G  Y  L  V  T  M  C  V  G  G  *  W  A  I  *  Q  Q  K  Q  *  K  I  Q  Y  R  R  L  F  L  K  P  R  D  M  T  D  *  L  M  F  Q  N  L  M  L  V  H  *  N  H  I  K  Q  H  P  K  L  P  L  R  E  K  R  N  P  P  P  C  T  K  *  I  L  *  L  S  T  D  V  S  F  L  P  T  W  L  E  V  D  K  Q  Q  L  I  I  T  P  T  *  *  K  K  V  K  G  P  E  T  K  M  I  Q  F  D  H  C  K  L  L  T  *  K  N  E  I  I  * </second_frame>
            <third_frame>   K  F  L  W  P  R  D  V  E  A  A  *  I  I  C  I  V  P  I  T  I  N  Q  G  E  N  I  *  L  G  M  T  *  *  F  H  I  D  S  Y  *  F  I  R  S  H  F  *  *  D  S  I  Y  K  H  T  S  N  V  M  C  F  S  K  D  I  W  *  L  C  V  *  G  D  N  G  R  F  D  S  K  S  N  K  K  S  N  I  E  D  Y  F  *  N  H  E  I  *  L  I  N  *  C  F  K  I  *  C  W  F  I  R  T  I  *  S  N  T  L  N  S  H  *  E  K  N  G  T  P  R  R  V  Q  N  K  F  C  S  *  V  Q  T  F  L  S  S  P  H  G  *  K  *  I  N  N  N  *  L  *  L  P  H  D  E  K  K  *  K  V  P  R  R  K  *  S  N  L  T  I  V  N  C  *  H  E  K  M  K  *  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0074N01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="130733" PGL_stop="130336"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="130733" e_stop="130336"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="130733" e_stop="130336" e_length="398"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="130733" stop="130336"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E614017" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGGTAAGTTTTGACCCGCACGAAAGGCGTAACGATCTGGGCACTGTATCAGAGAAAGGCTCAGTGAAATAGACATGTCTGTGAAGATGCGCACTACCTGCACCTGGATAGAAAGACCCTATGAAGCTTCACTGTTCCCTAGGATTGGCTTTGGGCCTTTGCTGCGCAGCTTAGGTGGAAGGCAAAGAAGGCCTCCTTCCGGGGGGCCCGAGCCGTCAGTGAGATACCACGCTGGAAGGGATAGAATTCTAACCTTGAATCAGGACCTACGGGCCAAGGGACAGTCTCAGGTAGACTGTTTCTATGGAGCGTAGGCCTCTCAAAAGGTAATGGAGGTGTGCAAAGGTTTCCTCGAGTCGGATGGAGATTGGCCCTCGAGTGAAAAGGCATAAGGGAGC</gDNA_template>
            <first_frame> Q  V  S  F  D  P  H  E  R  R  N  D  L  G  T  V  S  E  K  G  S  V  K  *  T  C  L  *  R  C  A  L  P  A  P  G  *  K  D  P  M  K  L  H  C  S  L  G  L  A  L  G  L  C  C  A  A  *  V  E  G  K  E  G  L  L  P  G  G  P  S  R  Q  *  D  T  T  L  E  G  I  E  F  *  P  *  I  R  T  Y  G  P  R  D  S  L  R  *  T  V  S  M  E  R  R  P  L  K  R  *  W  R  C  A  K  V  S  S  S  R  M  E  I  G  P  R  V  K  R  H  K  G   </first_frame>
            <second_frame>  R  *  V  L  T  R  T  K  G  V  T  I  W  A  L  Y  Q  R  K  A  Q  *  N  R  H  V  C  E  D  A  H  Y  L  H  L  D  R  K  T  L  *  S  F  T  V  P  *  D  W  L  W  A  F  A  A  Q  L  R  W  K  A  K  K  A  S  F  R  G  A  R  A  V  S  E  I  P  R  W  K  G  *  N  S  N  L  E  S  G  P  T  G  Q  G  T  V  S  G  R  L  F  L  W  S  V  G  L  S  K  G  N  G  G  V  Q  R  F  P  R  V  G  W  R  L  A  L  E  *  K  G  I  R  E  </second_frame>
            <third_frame>   G  K  F  *  P  A  R  K  A  *  R  S  G  H  C  I  R  E  R  L  S  E  I  D  M  S  V  K  M  R  T  T  C  T  W  I  E  R  P  Y  E  A  S  L  F  P  R  I  G  F  G  P  L  L  R  S  L  G  G  R  Q  R  R  P  P  S  G  G  P  E  P  S  V  R  Y  H  A  G  R  D  R  I  L  T  L  N  Q  D  L  R  A  K  G  Q  S  Q  V  D  C  F  Y  G  A  *  A  S  Q  K  V  M  E  V  C  K  G  F  L  E  S  D  G  D  W  P  S  S  E  K  A  *  G  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0074N01.2" strand="-"/>
                <serials PGL_serial="11" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="130701" stop="130420"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>279</number_coding_nucleotides>
                  <number_encoded_amino_acids>93</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>RSGHCIRERLSEIDMSVKMRTTCTWIERPYEASLFPRIGFGPLLRSLGGRQRRPPSGGPEPSVRYHAGRDRILTLNQDLRAKGQSQVDCFYGA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 149 chains have been computed
$ 
$ memory statistics:
$ 111392 bytes spliced alignments in total
$ 54 spliced alignments have been stored
$ 2062 bytes was the average size of a spliced alignment
$ 18784 bytes predicted gene locations in total
$ 11 predicted gene locations have been stored
$ 1707 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 174 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 05:21:05
-->
