<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 05:21:10"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U593938" ref_strand="+" ref_description="SGN-U593938 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147857589|emb|CAN80995.1| (e_value=2e-27) hypothetical; (*ATH) AT3G26070.1 (e_value=1e-27) | Symbol: None | plastid-lipid associated protein PAP / fibrillin family protein, contains Pfam profile PF04755: PAP_fibrillin | chr3:9527985-9529820 FORWARD | Aliases: MPE11.24; (*SWP) sp|Q9LU85|PAP4_ARATH (e_value=9e-27) Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana GN=PAP4; ">
      <seq>ccctgcaggtagaaagtagaaaggcattcatttgcagcattcccatggccctattcttactattcccttcattaacccaaatttttttaaccaaaccttcttttttttttccttggaatggaaaatcctaatcctaattccaataataatcccaacctttttcttttaattaaaaaagggcaaaccaccgtttttttcttcctttcttttttcaccaagaagaccaaagaccctacacccattaaacaagagcttcttcaagccattgaacctcttgatcgtggcgctgacgccactcctcaagaccagcagataattgatcagattgcttgcagacttgaagcttgcaatccaacaaaggagcccctcaactcaactctgcttaatggaaaatgggaacttatatacactacatcaaagtctattttacagattcagagacccaagattttgcgatttagattgaattatcaagcaataaatgtagatacac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="+" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="14534" stop="20661"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14829" g_stop="15152" g_length="324"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="324" r_length="324" r_score="0.861"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15153" i_stop="15249" i_length="97">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15250" g_stop="15363" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="438" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15364" i_stop="20306" i_length="4943">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.665" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20307" g_stop="20361" g_length="55"/>
          <reference_exon_boundary r_type="cDNA" r_start="439" r_stop="493" r_length="55" r_score="0.982"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="+" ref_id="SGN-U593938" ref_strand="+">
        <total_alignment_score>0.907</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U593938" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14829" e_stop="15152"/>
          <exon e_start="15250" e_stop="15363"/>
          <exon e_start="20307" e_stop="20361"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTGTGAAGTAGAAAGTAGAAAGTCATTCATTTGCAGCATTCCCATGGCCTTATCCTCACTATCCCCTCCATTAACACATATTTCTTCAACGAAA-CTTCATCTCTCTTTCCCTTGTATCGTAAATCCTCATCCTCATTCCCATAATTATACCAACCTTTCTCCTCTCAATAAAAAATGGCAGACCAACGTTTCTTTCTTCCCTTCTTTCTTCAACAAGAAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCCATTGAACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAGGTTTTGCTTCACCTCATTGCAATTATCCAGTTTAGGTTTAGTTTTCTGACTGATTGTGTGTTTCTTTTAGTTTCTCAACACAATGTTATTTGATTAGATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAACTCTGCTTAATGGAAAATGGGAACTTATATACACTACATCAAAGTCTATTTTACAGATTCAGGTGAAAACTATAACCATCATTCAAGTGTTTTACTGAATGTCATGAAAATTATGCTTCTAGGTCCTTTAATGGAACTGTATACATTGTTAAAATTCGTACCAAGCTGGGTAAAATGTTGAGTTTGTGAATGTCACCATTCAACTGTATATACACATTTTATGAGTTTGTGAGAATCTATACGATGCTTTGAAAGGAAATGGAAATCTGTACAGGAGACGGGGAAGGACATTCAATACATATATCTATAGAGTCTATCAAAATTATAACAACTTTGGCTGCTTTGTATGGATTGAAACATGTCTAGGTCACTAGAAAAATGCAATCATTCTCCCAGAAGTTGTACAAACAAAGGATGGGGAGACATTCCCACCAAAATTCCTCGAGACATTGCCACCAAAATTCCTCAATTTCTGGGAAATCACAGCAGTCTTAGATTTAATCTCTCTTCCCCATGAATATCACATGTTGAGTAGGCTTCCACAATTGGCATCTTTTACCAAGGTTTCTCCCAATGAAACCTGAAATGGTAATGTTGCAGATCTGGATATGAAAAGCTCTCAAGTTATAGCCTAAAGTTTGGTCGAATGCTTCAACAATTCCTTTCATCATAGCACAATCCGGAAGCTATACAAAAATGGTTCATTAGTAGATGGAAAATGTGCTTCACCTTCAAGGTGATACCGGTGAACCATAATCAATTCATTTTTGAGCTTCTATCGAGGAAGGAGGCGGTTATAGCTGGTCATTGGTTTTGGAACGGGAGACGGTTGACTCTTCAATGGTGGTCTTTGATCGCTGGATCAGAACTCGCACCCAAGAAAGAAGAACATCACATGATTAAAGCTTTTGGGATCCCAACACATCAGTATCATCAAAGGCGCGCTTAAGCCCTGAAGCGAGGCTCAAAACATGTTGAGCGCTTGACCTTGCTTTTTGTGCGCTTCAGTGTTGTCATCAAGGTTTTAAGGCAAACTTTTCCTTGATAATGAGCCTCTTATGAAGAAGTGACACTAAACGATTGATATTTCACTTAATCATAAAATAATTCTATTTCTTTGGTCATAAATGTGTCATTCATGATTATAATTATTTGTCTTGGACTAAACATATATAATTGTATCTTTTTCTCCCTTTGCGGCTTTTTTCATTAAAGCCCATGCTTTATTTGAGCTTTGCGCTTAAAGCATCACGGACCTTTGAGCTTTATGCGCTGTTCGCCTTTGATAACACCGCGAACACATGCATGGTCATTAAACAGGTTTAATAACATTTGGGAATTTAAGTGGGGCTTTATGGGAATTGATGAGGACACAAAGAATATGAACCAGTTAACTTGGGCCAGAATATACATAAAGAAAGCCTCCCATAGAGTGTTGCTGTCAAACATTAATTGACATTGATGAAGGAGGATGGAGATTTGAAATCTCAATCACATCGGATATCCATATAAAGATGAGGCCAATTGGAAGAGTGGAAAACATATCTGGAAATGAAACTGGCCCGATGTTTATATTAGGGTGAATAAGGAGATGTGTGATGGAGTCAATACTCGGGTTAGACCGGGTGAGAGGAGACTCTGAGTACTGCAGATGCATTAGGGATCAGGGATCAGGGATCAATTCTTAGCCCTTTTTTTTTTGCCTTGGTGATGGATGAGTTGACGCAATTCAGGAGGAGGTTCCATGGTGTATGTTATTTGCAGACGATATAGTACTGATTGATGAGATACGAGACTGAGTTAATGCTAGGTTGGATGTTTATAGACAAGTTATGGAGTCTAAAGGGTTCAGGTAGAGCAGGTGCAAAATGAAGTTTTTATAGTGCAAATTTAGTGTTGTTTGGATGTAGCAAATGTGGAAGTGACGCTTACAGCATAGACCAGTAAAAAGAGGGTTTTAAGTATCTTGGGTCCATAATCTAGGGTGGTGGGGACATTTAACGATGATGTCACACATTGCATTGGGGCAACATGGATGAAATGAAGGCTTGCCTTTGATGTTCTGTGCGACAAGAAGTACCACCTAAACTTAGAGATAAGTTCTACAGAGTGTGTAAGGGGTGAAGTGCTGACCAATCAAGAACTCATATATTTAGAAGATGCATGTTCCGGATATGAAAATTTTGAGATAAATGTGTGGACATACTAGGAGCGATAAGATTCGAAATGAGATTATCTAGGAGAGGGTGGGAGTGGCCACAAGACGAGGAAAGCTAGTCTGAGATAGTTTGGGCATGTAAAAAGGAGGTGTGCTGCCCTAGTAAGGAGGTGCAATCGGGTGTTGGTTGTACGAGGTATGCAGAGGGGTGAGGTGGACCCAAAAAGTACTGGGGAGAGGTGATCAGATAAGACATGATGGTACTTCATATTATCGTGGAAATGACTCTAGATAGGATGGAGTGGAGGTCACATATTGAGGTAGAAGGTTAGTAGCGGTTAAGTGTTGTCTTGCCTTGCGAAGATTTAGGCGTATTAGTGCATGTCGTATTACTAGTCAAACCTTTCTTGCCATATGTAGTTATTGTTTCTTGTAGACTTTACATAACTTTTTTTATTAACTGCTATGCTTTCTTCATTGTTTCTTCTTTCGTTACTAAGATTTGATGCACTTGAGTCGAGGGTCTTTTGGAAACAATCTCTACCTCCATGAGGAAGTGGTAAGGTCTGCGTATACTCTATCCTCTCTAGACCCCACTTAGTGGAGTTTCACTGGGCATGTTGTTGTTGCTATCCTAAAGTCTAATCAAATCCTTGTCTAAAATCACTATGTTAAGATATGTCATTAGGCCCATATGCCATATCTTAACATGGTATCAGAGCCAGAGATGATGGCCCCATTTAGAAGTGTTCATGCTCCAATTGAGGTCTGAGCGTGCAGGGGAGTGTTAAGACGTCTCACGTCGGTAGAGGGATGGGAATTTGGTCTCCTTATATGGACTTGGACAAACCTCCCCTCATGAGCTAGCTTTTGGGGTTGAGTTAGGTCCAGATGTCATATCTTAACAATCTCAAACTGAGTTTCCATATATCCAAAAATAGTAGTACGATGAAAGAATCCAGAAAATCTGACTTTTATACTCGGAGAATCTTCATCACGATCGCCACGTGCCCACACGACTGCCTACAGGTTGATCGGGACCCAACACGATCATTACCACGCCTTTGGGAAATCCAAAAAAGCCTAGACCTTGACCCCCTATTTACTCTACGCGATTGCGGCAGGGGAGCACACAATTGTGATGCACATCATTTTCCTTAACTTTGATCGTGATAACATTGCCTGTACCAGAAATCAGCATCAGCTGAAATGAAAAATTGTATACGAAACCCCTCAGATCTCAACCTAAACTGTACAAACAAGTCCCAAAATATTAAACCAAATAGGAAGTTCCAAAACATAAAATGGAACACACATGCTCCAAACTAAGGATTGGGTTATCACATAAAATACTTGTTTAAGGCCCATTCTTAATCACTTGCACTATTCTCATGTAATGAACTATCATCTTTATGAGGAGAACACAAGATCCTTCAGATCATTCTGAATTGGACCCTATTTGGTCTAAGTAGTCACCAGAGTCCAGATCAACTTGCCATTGTTACCAATTAATGGCATATGCAGTTTACAATAGAATATTATGGCTGTAGGATAATTATTCACCAATGAATGGTCAGTGTTTTGGAAAGCGAGAAGCGGAAAAAAGCGACGAGGGCTTGCTTCACAGAAGCGAGAAGCGTGAAGTGAAGCGCACACTTTTTTTAAAAAAAAGCTACATTTAGTATAAAAATAAAATAATAATAAATAACTAAATAGAGGTAATATAGTCTTAGATTGAAAGAAATTACATACGCAAAAATACTCATAAGTCATAACATATAAAGCAAAAAAATCAAAAACATAATTAAATCACAAAGATTGAAACTCCTATTCTTCAACAAGGCTGCTAGACTGATCACAAAATTAAAAAAAAAAAAAAGCAAAAGAAGTGAAAAAAAACCCAGAGGCAGCAGTCAGTAATTAGAAACAGAGCAGGCAACAGAGATGAAGAAAAGAAGAGAAGAAGAAGAAAAAACTAGAGAAGTCGAAACTCAGAGAGATAAAGAGATGAAGCACAGGCGAAGATTGTATATTTCAGGAGAAAAGAAACTCATAGAGATGAACTAATAAACATTAGCTAAAAAAGAGATGAACAAAAAGTTACCTGCAGTCTCGGTCGAGGTTGAAGAGAGAGGCAGCCTCAGTCGAGATCGTCAGGAGGGAAAGAAGTATTGTGAAAGAAGAGCCGCGAGGAGAGAAAGAAGGGAAAGAGTCGTGAGGAGAGAGAAGGTTATATTTCAGATTTTTTTAAAAAAAACTAATTTCTTTTTAAAAAAACTAATTGTCGCCTTTTATTTTATTTTATAAAAAGCGCGTTTTATTGCGCTTTTGCCTTTCTTCATCTGAAGCGAGAGCTTTTTTCAGATCGCCTCCCCTCAAGATAAAAAAGCGCACAAGGGTCGCCTCGCTTTGAAGCGCGCTTTAAGCGTGCTTTTTTGCGCTTTTCATAACACTGTAATGGTCATGCTATGTTCATTCTAAGTATGCCAGTTTATATTCATATCTATTGACAGAAACTTAATATTCTTTCTGTTAGCTGAATCAATTTTACTTGTATTGGAAACTCCAATTTTGTAATTGATGAACGGAATTAGTTGTCTCTTCTATTTTACTGTACAAGGCAGTATTTACTAAAGACAAGATTAGTATTGGTATGTGATTGCATGCTCTTTTGCATAGAAAGGTCAGGAAAAGGAAGAGGGTGAAATACCGAGTGCCTAGCACTTTCTAGTTCCCATATCTCGGCTACTGTATGATCAAGTAGCCAGTATTGTGTTGATGTTAATCTTCTTGTTATTTCGAAAAGTTATACAAATGAAGGTACTTATAGCTTAATATTTTGAACAGAGACCCAAGATTTTGCGATCTAGATTGAATTATCAAGCAATAAATGTAGATACAC</genome_strand>
        <mrna_strand>CCCTG-CAGGTAGAAAGTAGAAAGGCATTCATTTGCAGCATTCCCATGGCCCTATTCTTACTATTCCCTTCATTAACCCAAATTTTTTTAACCAAACCTTCTTTTTTTTTTCCTTGGAATGGAAAATCCTAATCCTAATTCCAATAATAATCCCAACCTTTTTCTTTTAATTAAAAAAGGGCAAACCACCGTTTTTTTCTTCCTTTCTTTTTTCACCAAGAAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCCATTGAACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAG.................................................................................................ATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAACTCTGCTTAATGGAAAATGGGAACTTATATACACTACATCAAAGTCTATTTTACAGATTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCCAAGATTTTGCGATTTAGATTGAATTATCAAGCAATAAATGTAGATACAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U574430" ref_strand="+" ref_description="SGN-U574430 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|157349531|emb|CAO24749.1| (e_value=3e-79) unnamed; (*ATH) AT3G26070.1 (e_value=1e-66) | Symbol: None | plastid-lipid associated protein PAP / fibrillin family protein, contains Pfam profile PF04755: PAP_fibrillin | chr3:9527985-9529820 FORWARD | Aliases: MPE11.24; (*SWP) sp|Q9LU85|PAP4_ARATH (e_value=1e-65) Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana GN=PAP4; ">
      <seq>tggaagtagaaagtagaaagtcattcatttgcagcattcccatggccttatcctcactatcccctccattaacacatatttcttcaacgaaacttcatctctctttcccttgtatcgtaaatcctcatcctcattcccataattataccaacctttctcctctcaataaaaaatggcagaccaacgtttctttcttcccttctttcttcaacaagaagaccaaagaccctacacccattaaacaagagcttcttcaagccattgaacctcttgatcgtggcgctgacgccactcctcaagaccagcagataattgatcagattgcttgcagacttgaagcttgcaatccaacaaaggagcccctcaactcaactctgcttaatggaaaatgggaacttatatacactacatcaaagtctattttacagattcagagacccaagattttgcgatctagattgaattatcaagcaataaatgtagatacacttcgggctcagaatatggaaggatggcccttcttcaaccaggttactgcagatttgaccccgctgaatgcacaaaaggtggcagtaaagtttgattatttcaaaattgctggactaatacctattaaagctcctggaagagctaaaggcgagcttgaaattacttacttggatgaagaattgagggtatcaagaggtgatcttggcaacttgttcattttgaaaatggttgacccttcttacaaggtccctacttgagattgctactatcaactttatagagttactaattagtgtcacatcttatattataatattatatgccaagtctgtgcaaaggattcacaagcattttctctcttcaatttaactactgtacaaaattgcattaaaaaacttaagtaatttcaaacttgtgtatatgcagctttatcaaaatttcttgtcataa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="+" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="14533" stop="23702"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14832" g_stop="15152" g_length="321"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="320" r_length="320" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15153" i_stop="15249" i_length="97">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15250" g_stop="15363" g_length="114"/>
          <reference_exon_boundary r_type="cDNA" r_start="321" r_stop="434" r_length="114" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="15364" i_stop="20306" i_length="4943">
            <donor d_prob="0.949" d_score="1.00"/>
            <acceptor a_prob="0.665" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="20307" g_stop="20402" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="530" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="20403" i_stop="21696" i_length="1294">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.971" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="21697" g_stop="21771" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="531" r_stop="605" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="21772" i_stop="22012" i_length="241">
            <donor d_prob="0.970" d_score="1.00"/>
            <acceptor a_prob="0.981" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22013" g_stop="22080" g_length="68"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="673" r_length="68" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="22081" i_stop="23136" i_length="1056">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.987" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="23137" g_stop="23402" g_length="266"/>
          <reference_exon_boundary r_type="cDNA" r_start="674" r_stop="939" r_length="266" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="+" ref_id="SGN-U574430" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>940</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U574430" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14832" e_stop="15152"/>
          <exon e_start="15250" e_stop="15363"/>
          <exon e_start="20307" e_stop="20402"/>
          <exon e_start="21697" e_stop="21771"/>
          <exon e_start="22013" e_stop="22080"/>
          <exon e_start="23137" e_stop="23402"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGTGAAGTAGAAAGTAGAAAGTCATTCATTTGCAGCATTCCCATGGCCTTATCCTCACTATCCCCTCCATTAACACATATTTCTTCAACGAAACTTCATCTCTCTTTCCCTTGTATCGTAAATCCTCATCCTCATTCCCATAATTATACCAACCTTTCTCCTCTCAATAAAAAATGGCAGACCAACGTTTCTTTCTTCCCTTCTTTCTTCAACAAGAAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCCATTGAACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAGGTTTTGCTTCACCTCATTGCAATTATCCAGTTTAGGTTTAGTTTTCTGACTGATTGTGTGTTTCTTTTAGTTTCTCAACACAATGTTATTTGATTAGATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAACTCTGCTTAATGGAAAATGGGAACTTATATACACTACATCAAAGTCTATTTTACAGATTCAGGTGAAAACTATAACCATCATTCAAGTGTTTTACTGAATGTCATGAAAATTATGCTTCTAGGTCCTTTAATGGAACTGTATACATTGTTAAAATTCGTACCAAGCTGGGTAAAATGTTGAGTTTGTGAATGTCACCATTCAACTGTATATACACATTTTATGAGTTTGTGAGAATCTATACGATGCTTTGAAAGGAAATGGAAATCTGTACAGGAGACGGGGAAGGACATTCAATACATATATCTATAGAGTCTATCAAAATTATAACAACTTTGGCTGCTTTGTATGGATTGAAACATGTCTAGGTCACTAGAAAAATGCAATCATTCTCCCAGAAGTTGTACAAACAAAGGATGGGGAGACATTCCCACCAAAATTCCTCGAGACATTGCCACCAAAATTCCTCAATTTCTGGGAAATCACAGCAGTCTTAGATTTAATCTCTCTTCCCCATGAATATCACATGTTGAGTAGGCTTCCACAATTGGCATCTTTTACCAAGGTTTCTCCCAATGAAACCTGAAATGGTAATGTTGCAGATCTGGATATGAAAAGCTCTCAAGTTATAGCCTAAAGTTTGGTCGAATGCTTCAACAATTCCTTTCATCATAGCACAATCCGGAAGCTATACAAAAATGGTTCATTAGTAGATGGAAAATGTGCTTCACCTTCAAGGTGATACCGGTGAACCATAATCAATTCATTTTTGAGCTTCTATCGAGGAAGGAGGCGGTTATAGCTGGTCATTGGTTTTGGAACGGGAGACGGTTGACTCTTCAATGGTGGTCTTTGATCGCTGGATCAGAACTCGCACCCAAGAAAGAAGAACATCACATGATTAAAGCTTTTGGGATCCCAACACATCAGTATCATCAAAGGCGCGCTTAAGCCCTGAAGCGAGGCTCAAAACATGTTGAGCGCTTGACCTTGCTTTTTGTGCGCTTCAGTGTTGTCATCAAGGTTTTAAGGCAAACTTTTCCTTGATAATGAGCCTCTTATGAAGAAGTGACACTAAACGATTGATATTTCACTTAATCATAAAATAATTCTATTTCTTTGGTCATAAATGTGTCATTCATGATTATAATTATTTGTCTTGGACTAAACATATATAATTGTATCTTTTTCTCCCTTTGCGGCTTTTTTCATTAAAGCCCATGCTTTATTTGAGCTTTGCGCTTAAAGCATCACGGACCTTTGAGCTTTATGCGCTGTTCGCCTTTGATAACACCGCGAACACATGCATGGTCATTAAACAGGTTTAATAACATTTGGGAATTTAAGTGGGGCTTTATGGGAATTGATGAGGACACAAAGAATATGAACCAGTTAACTTGGGCCAGAATATACATAAAGAAAGCCTCCCATAGAGTGTTGCTGTCAAACATTAATTGACATTGATGAAGGAGGATGGAGATTTGAAATCTCAATCACATCGGATATCCATATAAAGATGAGGCCAATTGGAAGAGTGGAAAACATATCTGGAAATGAAACTGGCCCGATGTTTATATTAGGGTGAATAAGGAGATGTGTGATGGAGTCAATACTCGGGTTAGACCGGGTGAGAGGAGACTCTGAGTACTGCAGATGCATTAGGGATCAGGGATCAGGGATCAATTCTTAGCCCTTTTTTTTTTGCCTTGGTGATGGATGAGTTGACGCAATTCAGGAGGAGGTTCCATGGTGTATGTTATTTGCAGACGATATAGTACTGATTGATGAGATACGAGACTGAGTTAATGCTAGGTTGGATGTTTATAGACAAGTTATGGAGTCTAAAGGGTTCAGGTAGAGCAGGTGCAAAATGAAGTTTTTATAGTGCAAATTTAGTGTTGTTTGGATGTAGCAAATGTGGAAGTGACGCTTACAGCATAGACCAGTAAAAAGAGGGTTTTAAGTATCTTGGGTCCATAATCTAGGGTGGTGGGGACATTTAACGATGATGTCACACATTGCATTGGGGCAACATGGATGAAATGAAGGCTTGCCTTTGATGTTCTGTGCGACAAGAAGTACCACCTAAACTTAGAGATAAGTTCTACAGAGTGTGTAAGGGGTGAAGTGCTGACCAATCAAGAACTCATATATTTAGAAGATGCATGTTCCGGATATGAAAATTTTGAGATAAATGTGTGGACATACTAGGAGCGATAAGATTCGAAATGAGATTATCTAGGAGAGGGTGGGAGTGGCCACAAGACGAGGAAAGCTAGTCTGAGATAGTTTGGGCATGTAAAAAGGAGGTGTGCTGCCCTAGTAAGGAGGTGCAATCGGGTGTTGGTTGTACGAGGTATGCAGAGGGGTGAGGTGGACCCAAAAAGTACTGGGGAGAGGTGATCAGATAAGACATGATGGTACTTCATATTATCGTGGAAATGACTCTAGATAGGATGGAGTGGAGGTCACATATTGAGGTAGAAGGTTAGTAGCGGTTAAGTGTTGTCTTGCCTTGCGAAGATTTAGGCGTATTAGTGCATGTCGTATTACTAGTCAAACCTTTCTTGCCATATGTAGTTATTGTTTCTTGTAGACTTTACATAACTTTTTTTATTAACTGCTATGCTTTCTTCATTGTTTCTTCTTTCGTTACTAAGATTTGATGCACTTGAGTCGAGGGTCTTTTGGAAACAATCTCTACCTCCATGAGGAAGTGGTAAGGTCTGCGTATACTCTATCCTCTCTAGACCCCACTTAGTGGAGTTTCACTGGGCATGTTGTTGTTGCTATCCTAAAGTCTAATCAAATCCTTGTCTAAAATCACTATGTTAAGATATGTCATTAGGCCCATATGCCATATCTTAACATGGTATCAGAGCCAGAGATGATGGCCCCATTTAGAAGTGTTCATGCTCCAATTGAGGTCTGAGCGTGCAGGGGAGTGTTAAGACGTCTCACGTCGGTAGAGGGATGGGAATTTGGTCTCCTTATATGGACTTGGACAAACCTCCCCTCATGAGCTAGCTTTTGGGGTTGAGTTAGGTCCAGATGTCATATCTTAACAATCTCAAACTGAGTTTCCATATATCCAAAAATAGTAGTACGATGAAAGAATCCAGAAAATCTGACTTTTATACTCGGAGAATCTTCATCACGATCGCCACGTGCCCACACGACTGCCTACAGGTTGATCGGGACCCAACACGATCATTACCACGCCTTTGGGAAATCCAAAAAAGCCTAGACCTTGACCCCCTATTTACTCTACGCGATTGCGGCAGGGGAGCACACAATTGTGATGCACATCATTTTCCTTAACTTTGATCGTGATAACATTGCCTGTACCAGAAATCAGCATCAGCTGAAATGAAAAATTGTATACGAAACCCCTCAGATCTCAACCTAAACTGTACAAACAAGTCCCAAAATATTAAACCAAATAGGAAGTTCCAAAACATAAAATGGAACACACATGCTCCAAACTAAGGATTGGGTTATCACATAAAATACTTGTTTAAGGCCCATTCTTAATCACTTGCACTATTCTCATGTAATGAACTATCATCTTTATGAGGAGAACACAAGATCCTTCAGATCATTCTGAATTGGACCCTATTTGGTCTAAGTAGTCACCAGAGTCCAGATCAACTTGCCATTGTTACCAATTAATGGCATATGCAGTTTACAATAGAATATTATGGCTGTAGGATAATTATTCACCAATGAATGGTCAGTGTTTTGGAAAGCGAGAAGCGGAAAAAAGCGACGAGGGCTTGCTTCACAGAAGCGAGAAGCGTGAAGTGAAGCGCACACTTTTTTTAAAAAAAAGCTACATTTAGTATAAAAATAAAATAATAATAAATAACTAAATAGAGGTAATATAGTCTTAGATTGAAAGAAATTACATACGCAAAAATACTCATAAGTCATAACATATAAAGCAAAAAAATCAAAAACATAATTAAATCACAAAGATTGAAACTCCTATTCTTCAACAAGGCTGCTAGACTGATCACAAAATTAAAAAAAAAAAAAAGCAAAAGAAGTGAAAAAAAACCCAGAGGCAGCAGTCAGTAATTAGAAACAGAGCAGGCAACAGAGATGAAGAAAAGAAGAGAAGAAGAAGAAAAAACTAGAGAAGTCGAAACTCAGAGAGATAAAGAGATGAAGCACAGGCGAAGATTGTATATTTCAGGAGAAAAGAAACTCATAGAGATGAACTAATAAACATTAGCTAAAAAAGAGATGAACAAAAAGTTACCTGCAGTCTCGGTCGAGGTTGAAGAGAGAGGCAGCCTCAGTCGAGATCGTCAGGAGGGAAAGAAGTATTGTGAAAGAAGAGCCGCGAGGAGAGAAAGAAGGGAAAGAGTCGTGAGGAGAGAGAAGGTTATATTTCAGATTTTTTTAAAAAAAACTAATTTCTTTTTAAAAAAACTAATTGTCGCCTTTTATTTTATTTTATAAAAAGCGCGTTTTATTGCGCTTTTGCCTTTCTTCATCTGAAGCGAGAGCTTTTTTCAGATCGCCTCCCCTCAAGATAAAAAAGCGCACAAGGGTCGCCTCGCTTTGAAGCGCGCTTTAAGCGTGCTTTTTTGCGCTTTTCATAACACTGTAATGGTCATGCTATGTTCATTCTAAGTATGCCAGTTTATATTCATATCTATTGACAGAAACTTAATATTCTTTCTGTTAGCTGAATCAATTTTACTTGTATTGGAAACTCCAATTTTGTAATTGATGAACGGAATTAGTTGTCTCTTCTATTTTACTGTACAAGGCAGTATTTACTAAAGACAAGATTAGTATTGGTATGTGATTGCATGCTCTTTTGCATAGAAAGGTCAGGAAAAGGAAGAGGGTGAAATACCGAGTGCCTAGCACTTTCTAGTTCCCATATCTCGGCTACTGTATGATCAAGTAGCCAGTATTGTGTTGATGTTAATCTTCTTGTTATTTCGAAAAGTTATACAAATGAAGGTACTTATAGCTTAATATTTTGAACAGAGACCCAAGATTTTGCGATCTAGATTGAATTATCAAGCAATAAATGTAGATACACTTCGGGCTCAGAATATGGAAGGATGGCCCTTCTTCAACCAGGTACTTGATTTGGAATCAATTTTTTTTTTGACATGTCCAACAATGTTATATTGAAATTTATTGAGAAGTTAACTCCCTTATTTACTATTACTAGTAATCGTGGAAATACTCTCTATTTTAGTATCCTTCCCCTTTGTTGGATTTTTGTTTCTGCGAAATGTTCTATTAAGTGACCAAAGTCCAGGAACTTGCAGTTCCTTTTTTTTGTTCTTTTTTTTTTTTGTCTTTCAGACAAACGTGAAACTAGAATTCATGGTTGACTTATGGGGAAAAAAGGAGAATTTTTAGATTTCCTTGTAATTCAGACAGTGATACTTTAAATTTGATTTTCCCCTGAAATTTGGTGATAGAACAAACCACAAATGGAAGTAACTTTTGAGTTTGAGCTTCCATATCTGATATTTTCGGAATCCTAATAAAAATTATCCATAGATCTTTATGAACTAAAGGATGGAACTTCTCCAGGAAGAAGTCTCTAGAGAAAAAAAAGGGTTTAAGATTTAATATAAAATGAATGTAATTATGGTATTAGAAACATAGTGAAAAGCATAAAGAAGAAGAGGAGAGTAATATTCTAGAGATCCCATATACTGTTCCTTCAAACAACCTACACTTTTCTCATGTTTTAAGAGACTTGGAAAGCTTCAAACCACTAATTTTACCATAAAACCAAATTATACATCTAATTTATTGTAGATATGCACAGGATTTTTTTTTGATCAATAATGTGTAGTTCTGTTGAATATACTTTGCTAATTTGTTGTTTCCAGTTAGTTGCCTTTAATGCCATATTCCCACACACACTTCGGATTACATTTTCCTTCAGCTGTGTTACAGTAAATTTTGATTGTACTGTTCCAATCTGTTCGTGTATTATGTCTATTAGGATGAATCTGAAATTCAGTAGAAATTTAGCCTTCTATGGATAATCATCCTCAACTAACCTCCCCCCCCCCCCCCCCCAACCCCAAAACCCCCAACAAATCTCTTTCCTACATAAGGTTTAAGAGCACCCTTCATATCACAGTGACTTAACCTTTGTCCAATTGAAAACGATAACACGATGGATAGGTCACTGTAAGTTCTAACAAGTGGATAAAAATGGCATGTTTCCTTGCACATTTTCTCTATAGAAGAGACTAGAGAGAAAGCATATTAATTAACTAGAAAGCAAACCCAAAAGTTAAATCATTGTTGGCCTAGCAAAATAAGTTCATATATCTTCTCATCTATTTCTTTCTTTAGTAGCATATTTCCAAATTTTATGATTTACATCTTCAATCATCTCCTGAAGGTTACTGCAGATTTGACCCCGCTGAATGCACAAAAGGTGGCAGTAAAGTTTGATTATTTCAAAATTGCTGGACTAGTAAGTTCCACATTCTTTACTCATCACTTTACAACAAAGGGTTATTTCGCTTGTAATGCATTCTTACACTTAACTGTTCCAAATACAAAAATAAAAAATAAAAAAATAGAATGAGTTGGTAATGTAATTTCATGACAGTTTGTGCGGGTGTACATAACATGAGAGCACAAATATGGATCAGTATTTTTTAATCTTTTTTCTAACCTTTTCTTTTCTTCGTCTCTTCGTTGTTGGCTGGCAGATACCTATTAAAGCTCCTGGAAGAGCTAAAGGCGAGCTTGAAATTACTTACTTGGATGAAGAATTGAGGTGAGTTTATGTATTGTATTGTAATTCATGTATTCTTGAGTCTATAGAAGCCGACACTTAGTTCTGTTAACATGGTATGTCTACTTCATTCTAGTTTCTTGGTTGCATGTGTATGCTGTGTCATATAGTACACAGTTTTGTAAAATAAAATTAATATTATAAAACAAAATTCTGAATAAATATCTAAAGACATCAAACATTAGCAGTCATAGCTTACATTGCTCAAATTAATATTTAAATTAGGACCTCTTTGAAACAGCCTCTCTATCTCAAAGAGGTAGTGGTTAAAACTGCTTACACTCTACCCTCCCTAGACCACACTTTGGCACACTTTGTGGGATTTCATTGAGTATGTTATTTTTGTTGGCTTATAAAAGAAGTTATATTTCCTACTCGCAGCTACTTCCGGTTTACAGATTAGATCCATGGCTTCTTCCACCTTCTCTCTCCCTTTTTTCTTCATTCTTGTTCAATTTTTTTATTCTCTTTCCCATTTCTTTATTTAAAAAATCAAACTAGCAGAAACTTTCCTGAAGACTATGTTGTATGGAGCAATAATTTTTTCTGCAATAATTAGAAATAAAGAAACCAAGAGATTGAAATATCAATTCGTGGAGTTAAATGGCTTGTTATATGGAGAAATATTTGTATGTATTTTTAAGATTGTCCTTTTTTTGTTATGAAGTGGATTATAAACTCAAGAAGGGTAAAGAGAAGCTCTTTGTTGATCAGTAAAGAGAAATTTACTCTACAACAACAAACCTTAAAATATTAATACTATTTATCTTAAGGGTGTGAAAAATGGACGATTTGGACATTATTATAGGGTATTAATAAACATTATTAATCAAATACTTTCAATTAAGTTTTCATATATATGACATAAACTTATACAAACAAGTCCTTTGTGTCTAGATAGTTGGGTTTGCCCAAATTTAGTCTATCAATAATGTATCTTATGTTCAACTCATTAAATTCTGAACGGATTGTACGGGTCAAATGAGTTTTAGGCCGATTATGTCACCACATTCTAATTTGTTATCCAATTTTTGACAGGGTATCAAGAGGTGATCTTGGCAACTTGTTCATTTTGAAAATGGTTGACCCTTCTTACAAGGTCCCTACTTGAGATTGCTACTATCAACTTTATAGAGTTACTAATTAGTGTCACATCTTATATTATAATATTATATGCCAAGTCTGTGCAAAGGATTCACAAGCATTTTCTCTCTTCAATTTAACTACTGTACAAAATTGCATTAAAAAACTTAAGTAATTTCAAACTTGTGTATATGCAGCTTTATCAAAATTTCTTGTCATAA</genome_strand>
        <mrna_strand>TG-GAAGTAGAAAGTAGAAAGTCATTCATTTGCAGCATTCCCATGGCCTTATCCTCACTATCCCCTCCATTAACACATATTTCTTCAACGAAACTTCATCTCTCTTTCCCTTGTATCGTAAATCCTCATCCTCATTCCCATAATTATACCAACCTTTCTCCTCTCAATAAAAAATGGCAGACCAACGTTTCTTTCTTCCCTTCTTTCTTCAACAAGAAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCCATTGAACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAG.................................................................................................ATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAACTCTGCTTAATGGAAAATGGGAACTTATATACACTACATCAAAGTCTATTTTACAGATTCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCCAAGATTTTGCGATCTAGATTGAATTATCAAGCAATAAATGTAGATACACTTCGGGCTCAGAATATGGAAGGATGGCCCTTCTTCAACCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACTGCAGATTTGACCCCGCTGAATGCACAAAAGGTGGCAGTAAAGTTTGATTATTTCAAAATTGCTGGACTA.................................................................................................................................................................................................................................................ATACCTATTAAAGCTCCTGGAAGAGCTAAAGGCGAGCTTGAAATTACTTACTTGGATGAAGAATTGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATCAAGAGGTGATCTTGGCAACTTGTTCATTTTGAAAATGGTTGACCCTTCTTACAAGGTCCCTACTTGAGATTGCTACTATCAACTTTATAGAGTTACTAATTAGTGTCACATCTTATATTATAATATTATATGCCAAGTCTGTGCAAAGGATTCACAAGCATTTTCTCTCTTCAATTTAACTACTGTACAAAATTGCATTAAAAAACTTAAGTAATTTCAAACTTGTGTATATGCAGCTTTATCAAAATTTCTTGTCATAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U593937" ref_strand="+" ref_description="SGN-U593937 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147857589|emb|CAN80995.1| (e_value=1e-24) hypothetical; (*ATH) AT3G26070.1 (e_value=2e-20) | Symbol: None | plastid-lipid associated protein PAP / fibrillin family protein, contains Pfam profile PF04755: PAP_fibrillin | chr3:9527985-9529820 FORWARD | Aliases: MPE11.24; (*SWP) sp|Q9LU85|PAP4_ARATH (e_value=2e-19) Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana GN=PAP4; ">
      <seq>ggaattcatttgcagcattcccatggccttatcctcactatcccctccattaccacatatttcttcaacgaaacttcatctctctttcccttgtatcgtaaatcctcatcctcattcccataattataccaacctttctcctctcaataaaaaatggcagaccaacgtttctttcttcccttctttcttcaacaagaagaccaaagaccctacacccattaaacaagagcttcttcaagccattgaacctcttgatcgtggcgctgacgccactcctcaagaccagcagataattgatcagattgcttgcagacttgaagcttgcaatccaacaaaggagcccctcaactcaactctgcttaatggaaaatgggaacttatatacactacatcaaagtctattttacagattcaggtgaaaactataaccatcattcaagtgttttactgaatgtcatgaaaattatgcttctaggtcctttaatggaactgtatacattgttaaaattcgtaccaagctgggtaaaatgttgagtttgtgaatgtcaccattcaactgtatatacacattttatgagtttgtgagaatctatacgatgctttgaaaggaaatggaaatctgtacaggagacggggaaggacattcaatacatatatctatagagtctatcaaaattataacaactttggctgctttgtatggattgaaacatgtct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="+" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="14555" stop="15965"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14852" g_stop="15152" g_length="301"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="301" r_length="301" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="15153" i_stop="15249" i_length="97">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="15250" g_stop="15665" g_length="416"/>
          <reference_exon_boundary r_type="cDNA" r_start="302" r_stop="717" r_length="416" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="+" ref_id="SGN-U593937" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U593937" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14852" e_stop="15152"/>
          <exon e_start="15250" e_stop="15665"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCATTCATTTGCAGCATTCCCATGGCCTTATCCTCACTATCCCCTCCATTAACACATATTTCTTCAACGAAACTTCATCTCTCTTTCCCTTGTATCGTAAATCCTCATCCTCATTCCCATAATTATACCAACCTTTCTCCTCTCAATAAAAAATGGCAGACCAACGTTTCTTTCTTCCCTTCTTTCTTCAACAAGAAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCCATTGAACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAGGTTTTGCTTCACCTCATTGCAATTATCCAGTTTAGGTTTAGTTTTCTGACTGATTGTGTGTTTCTTTTAGTTTCTCAACACAATGTTATTTGATTAGATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAACTCTGCTTAATGGAAAATGGGAACTTATATACACTACATCAAAGTCTATTTTACAGATTCAGGTGAAAACTATAACCATCATTCAAGTGTTTTACTGAATGTCATGAAAATTATGCTTCTAGGTCCTTTAATGGAACTGTATACATTGTTAAAATTCGTACCAAGCTGGGTAAAATGTTGAGTTTGTGAATGTCACCATTCAACTGTATATACACATTTTATGAGTTTGTGAGAATCTATACGATGCTTTGAAAGGAAATGGAAATCTGTACAGGAGACGGGGAAGGACATTCAATACATATATCTATAGAGTCTATCAAAATTATAACAACTTTGGCTGCTTTGTATGGATTGAAACATGTCT</genome_strand>
        <mrna_strand>GGAATTCATTTGCAGCATTCCCATGGCCTTATCCTCACTATCCCCTCCATTACCACATATTTCTTCAACGAAACTTCATCTCTCTTTCCCTTGTATCGTAAATCCTCATCCTCATTCCCATAATTATACCAACCTTTCTCCTCTCAATAAAAAATGGCAGACCAACGTTTCTTTCTTCCCTTCTTTCTTCAACAAGAAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCCATTGAACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAG.................................................................................................ATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAACTCTGCTTAATGGAAAATGGGAACTTATATACACTACATCAAAGTCTATTTTACAGATTCAGGTGAAAACTATAACCATCATTCAAGTGTTTTACTGAATGTCATGAAAATTATGCTTCTAGGTCCTTTAATGGAACTGTATACATTGTTAAAATTCGTACCAAGCTGGGTAAAATGTTGAGTTTGTGAATGTCACCATTCAACTGTATATACACATTTTATGAGTTTGTGAGAATCTATACGATGCTTTGAAAGGAAATGGAAATCTGTACAGGAGACGGGGAAGGACATTCAATACATATATCTATAGAGTCTATCAAAATTATAACAACTTTGGCTGCTTTGTATGGATTGAAACATGTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U593936" ref_strand="+" ref_description="SGN-U593936 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|147857589|emb|CAN80995.1| (e_value=4e-11) hypothetical; ">
      <seq>gcttcaacgaaacttcatctctctttcccttgtatcgtaaatcctcatcctcattcccataattataccaacctttctcctctcaataaaaaatggcagaccaacgtttctttcttcccttctttcttcaacaagaagaccaaagaccctacacccattaaacaagagcttcttcaagccattgaacctcttgatcgtggcgctgacgccactcctcaagaccagcagataattgatcaggttttgcttcacctcattgcaattatccagtttaggtttagttttctgactgattgtgtgtttcttttagtttctcaacacaatgttatttgattagattgcttgcagacttgaagcttgcaatccaacaaaggagcccctcaactcaactctgcttaatggaaaatgggaacttatatacactacatcaaagtctattttacagattcaggtgaaaactataaccatcattcaagtgttttactgaatgtcatgaaaattatgcttctaggtcctttaatggaactgtatacattgttaaaattcgtaccaagctgggtaaaatgttgagtttgtgaatgtcaccattcaactgtatatacacattttatgagtttgtgagaatctatacgatgctttgaaaggaaatggaaatctgtacaggagacggggaaggacattcaatacatatatctatagagtctgtcaaaattataacaactttggctgctttgtatggattgaaacatgtctaggtcactagaaaaatgcaatcattctccccaaagttgtacaaaccaaggatggggagacattcccaccaaaattcctcgagacattgccaccaaaattcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="+" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="14614" stop="16066"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="14913" g_stop="15766" g_length="854"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="854" r_length="854" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="+" ref_id="SGN-U593936" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>854</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U593936" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="14913" e_stop="15766"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTTCAACGAAACTTCATCTCTCTTTCCCTTGTATCGTAAATCCTCATCCTCATTCCCATAATTATACCAACCTTTCTCCTCTCAATAAAAAATGGCAGACCAACGTTTCTTTCTTCCCTTCTTTCTTCAACAAGAAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCCATTGAACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAGGTTTTGCTTCACCTCATTGCAATTATCCAGTTTAGGTTTAGTTTTCTGACTGATTGTGTGTTTCTTTTAGTTTCTCAACACAATGTTATTTGATTAGATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAACTCTGCTTAATGGAAAATGGGAACTTATATACACTACATCAAAGTCTATTTTACAGATTCAGGTGAAAACTATAACCATCATTCAAGTGTTTTACTGAATGTCATGAAAATTATGCTTCTAGGTCCTTTAATGGAACTGTATACATTGTTAAAATTCGTACCAAGCTGGGTAAAATGTTGAGTTTGTGAATGTCACCATTCAACTGTATATACACATTTTATGAGTTTGTGAGAATCTATACGATGCTTTGAAAGGAAATGGAAATCTGTACAGGAGACGGGGAAGGACATTCAATACATATATCTATAGAGTCTATCAAAATTATAACAACTTTGGCTGCTTTGTATGGATTGAAACATGTCTAGGTCACTAGAAAAATGCAATCATTCTCCCAGAAGTTGTACAAACAAAGGATGGGGAGACATTCCCACCAAAATTCCTCGAGACATTGCCACCAAAATTCC</genome_strand>
        <mrna_strand>GCTTCAACGAAACTTCATCTCTCTTTCCCTTGTATCGTAAATCCTCATCCTCATTCCCATAATTATACCAACCTTTCTCCTCTCAATAAAAAATGGCAGACCAACGTTTCTTTCTTCCCTTCTTTCTTCAACAAGAAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCCATTGAACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAGGTTTTGCTTCACCTCATTGCAATTATCCAGTTTAGGTTTAGTTTTCTGACTGATTGTGTGTTTCTTTTAGTTTCTCAACACAATGTTATTTGATTAGATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAACTCTGCTTAATGGAAAATGGGAACTTATATACACTACATCAAAGTCTATTTTACAGATTCAGGTGAAAACTATAACCATCATTCAAGTGTTTTACTGAATGTCATGAAAATTATGCTTCTAGGTCCTTTAATGGAACTGTATACATTGTTAAAATTCGTACCAAGCTGGGTAAAATGTTGAGTTTGTGAATGTCACCATTCAACTGTATATACACATTTTATGAGTTTGTGAGAATCTATACGATGCTTTGAAAGGAAATGGAAATCTGTACAGGAGACGGGGAAGGACATTCAATACATATATCTATAGAGTCTGTCAAAATTATAACAACTTTGGCTGCTTTGTATGGATTGAAACATGTCTAGGTCACTAGAAAAATGCAATCATTCTCCCCAAAGTTGTACAAACCAAGGATGGGGAGACATTCCCACCAAAATTCCTCGAGACATTGCCACCAAAATTCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U585643" ref_strand="+" ref_description="SGN-U585643 Tomato 200607#2 [4 ESTs aligned] (*GB) gi|18402254|ref|NP_566638.1| (e_value=2e-16) sodium hydrogen antiporter, putative (NHD1) [Arabidopsis thaliana]; (*ATH) AT3G19490.1 (e_value=1e-18) | Symbol: None | sodium hydrogen antiporter, putative, similar to NhaD (Vibrio parahaemolyticus) gi:3123728:dbj:BAA25994; Na+/H+ aniporter (NhaD) family member, PMID:11500563 | chr3:6754122-6758267 REVERSE | Aliases: MLD14.23; ">
      <seq>gcacgaggggtggatccatgctagtaattggttcagcagctggagtagcatttatgggaatggaaaaagtcgacttcttttggtatatgagaaaggttagtggttttgcttttgctggttatgctgccggtattgcttcgtatcttgcagtacataatctcgatatctcactcccaacagctctggctcaaattcctttccttcatggatcttgatgtccttggagctatcagtaaatctgatcggttgtgtattctctgcttcaagttaatgaccagaacatatgaacacaaatccagaacctttagtggtggagatgaaaatgccatatatcaatctctttagaactaccagtgtgttggcctgggttggggattaaagccccacataatgtaatttattgattctaatagtttaataatgtaactgtggagtaatacctccatcttcag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="45953" stop="44821"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="45653" g_stop="45558" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="95" r_length="95" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="45557" i_stop="45478" i_length="80">
            <donor d_prob="0.883" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="45477" g_stop="45121" g_length="357"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="452" r_length="357" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-U585643" ref_strand="+">
        <total_alignment_score>0.989</total_alignment_score>
        <cumulative_length_of_scored_exons>453</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U585643" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="45653" e_stop="45558"/>
          <exon e_start="45477" e_stop="45121"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCGGTACTGGTGGATCCATGCTAGTAATTGGTTCAGCAGCTGGAGTAGCATTTATGGGAATGGAAAAAGTCGACTTCTTTTGGTATATGAGAAAGGTACATATGCTGCTGCCTGCTATTTTGATGCACCACTTTGAACATTTCTGCTTCAATATTTGTCACTCTTATCTCTGCAGGTTAGTGGTTTTGCTTTTGCTGGTTATGCTGCCGGTATTGCTTCGTATCTTGCAGTACATAATCTCGATATCTCACTCCCAACAGCTCTGGCTCAAATTCCTTTCCTTCATGGATCTTGATGTCCTTGGAGCTATCAGTAAATCTGATCGGTTGTGTATTCTCTGCTTCAAGTTAATGACCAGAACATATGAACACAAATCCAGAACCTTTAGTGGTGGAGATGAAAATGCCATATATCAATCTCTTTAGAACTACCAGTGTGTTGGCCTGGGTTGGGGATTAAAGCCCCACATAATGTAATTTATTGATTCTAATAGTTTAATAATGTAACTGTGGAGTAATACCTCCATCTTCAG</genome_strand>
        <mrna_strand>GCACG-AGGGGTGGATCCATGCTAGTAATTGGTTCAGCAGCTGGAGTAGCATTTATGGGAATGGAAAAAGTCGACTTCTTTTGGTATATGAGAAAG................................................................................GTTAGTGGTTTTGCTTTTGCTGGTTATGCTGCCGGTATTGCTTCGTATCTTGCAGTACATAATCTCGATATCTCACTCCCAACAGCTCTGGCTCAAATTCCTTTCCTTCATGGATCTTGATGTCCTTGGAGCTATCAGTAAATCTGATCGGTTGTGTATTCTCTGCTTCAAGTTAATGACCAGAACATATGAACACAAATCCAGAACCTTTAGTGGTGGAGATGAAAATGCCATATATCAATCTCTTTAGAACTACCAGTGTGTTGGCCTGGGTTGGGGATTAAAGCCCCACATAATGTAATTTATTGATTCTAATAGTTTAATAATGTAACTGTGGAGTAATACCTCCATCTTCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U565758" ref_strand="+" ref_description="SGN-U565758 Tomato 200607#2 [7 ESTs aligned] (*GB) gi|38145480|emb|CAD91128.1| (e_value=2e-90) Na+/H+ antiporter precursor [Populus euphratica]; (*ATH) AT3G19490.1 (e_value=2e-91) | Symbol: None | sodium hydrogen antiporter, putative, similar to NhaD (Vibrio parahaemolyticus) gi:3123728:dbj:BAA25994; Na+/H+ aniporter (NhaD) family member, PMID:11500563 | chr3:6754122-6758267 REVERSE | Aliases: MLD14.23; ">
      <seq>gaagttagtgaaatagtgttctttttgcttggtgcgatgaccattgttaagatagttaatgctcatcagggatttaagctggttacagacaacatcactactcgcaagccaataactctgctttgggtggtaggttttgtgactttcttcctcagttcaatccttgacaatctgacttctacaattgtgatggtctccttactgaggaaactggcaccaccttcagaataccgaaagcttcttggcgctgttgttgttatagcagcaaatgccggtggagcatggactcccataggtgatgttacaactacaatgctctggatacacggccaagtatccacgttaccaacgatgaaggatttatttctaccgtcagttgtttctctagctgttcctttggctctgctgtcccttacaagtgaagtgaatgggaaaggacaaaactccgctgaggttctggcatccgaacagatggctcctcgaggacagctagttttcgcggttggacttggggctttagtgtttgtaccagttttcaaggccttgactggccttccaccgtacatgggtatgctgcttggactgggagttctttggataatcacagatgcgatccactatggagaatctgaaagacagcggctgaaagtaccacaggctttatcacgcattgacactcaaggagctcttttcttccttggaatcctattgtccgttagcaggtattgcagaatcctttgggttttataatacttacagcagcatggcaatcaaaaagttcatgcagaactcttttcttgatagaatagattcatacatcataaccctaaaatcattttaaaccagatgttgagaattaaccctgttcaaaaatttgccatccagatcatttggcattatatcatttcttagtcttgattaacagtgtaaccactataagtgaaatcattgggggaaatgggaagtggttcttattttacttctgcgggtatgatgggtgtaggatccattactctatttagctcatgcattgtgtgactatcaaccatcatccatgcacatgtgaattagataaataacatgactagtcattctggcatattaacatcttttccatagcctggaagcagcaggtattgtgcgagaattggcaaattaccttgatgcccatataccgaagtacctgcccagggcggcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="51503" stop="45488"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="51203" g_stop="51075" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="129" r_length="129" r_score="0.984"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="51074" i_stop="50066" i_length="1009">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.964" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="50065" g_stop="49959" g_length="107"/>
          <reference_exon_boundary r_type="cDNA" r_start="130" r_stop="236" r_length="107" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="49958" i_stop="48887" i_length="1072">
            <donor d_prob="0.781" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="48886" g_stop="48766" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="237" r_stop="357" r_length="121" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="48765" i_stop="46714" i_length="2052">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.934" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="46713" g_stop="46652" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="358" r_stop="419" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="46651" i_stop="46553" i_length="99">
            <donor d_prob="0.945" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="46552" g_stop="45794" g_length="759"/>
          <reference_exon_boundary r_type="cDNA" r_start="420" r_stop="1178" r_length="759" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-U565758" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1178</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U565758" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="51203" e_stop="51075"/>
          <exon e_start="50065" e_stop="49959"/>
          <exon e_start="48886" e_stop="48766"/>
          <exon e_start="46713" e_stop="46652"/>
          <exon e_start="46552" e_stop="45794"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAGTTAGTGAAATAGTGTTCTTTTTGCTTGGTGCGATGACCATTGTTGAGATAGTTGATGCTCATCAGGGATTTAAGCTGGTTACAGACAACATCACTACTCGCAAGCCAATAACTCTGCTTTGGGTGGTTAGTGATTCAATAACCTTTCCTCTTTCAAATTACTCTCGGTTCTGTTTAGTTAAGCAGTTATTTATTTTTCTCTATGAATATAGACGATTCTGTAATATCTTGCTTTTGGTCTAACAAAAACAGATAGTGGTCTGATTTTGCATGAAATATGTTACTTGATTGAAAATGCATATATACAATTCAAAATAAGTAAATCTAAGAATGTCAGAGTAAGGAATAATACAAGTGGATAATAATGGAAGGACCAAGTTACCTACCGATTTAGCAATCTATTAAGCCCCATGTTTCGTTCCAGCATATTCAGTTGTTGTACTCTTTTATGAAATGCATGTTAGAATGCAAGGCATCCAAAGTTTTCTTCTGTTGGAAAAGTCATCTCTTAGGAATTGACAATTTGTCAAAGTAAGAACTGCTCATTTTTTTTCTTCAATGGAGAGATGCACAGTTCTGTCAGAGAGGGGTTGCTATTAATTGATGGCTCTTAATAGTCTTTGTTGTACGTATTTCACATATATTGGCTTCTAATGTCCTTTCAATCATAAAATTTCTTATGAAATACATGTTCTTGGGCCGGAATTGTCCATGCTAGGATATATAGAAATCTTAGATTCATTTATTTTAAGAATTGACAATTTCTCAAAGTAGCTGTATAATTTTTACTTGATATGCAGATGCATAGTTATATCAAAGCGGGTTTGCTTTTAGTTGATCATCCTTAGTAGTCTACGTAGTAACTATTTTGAATTTAATTTGATTTTGCTCCTAGATATTGTAGGATCTTATAATGCGCAGCAGATGGGGGTGGTATGATTACCTTCACTAGATGAAGGACATGACATACATAGATGATTTATACACAGAAGGTGGCTAGCCAATAATATGATTTACCACATTAGCCTTTCGTTCAAAAAAAAATGATTTAACTGAGTCAAGACTGATTCAACATTTTGTTTGCTGCTTGTTTCCTGTAATTGTCATTAACTTTCTAAAGTTATGGTAATTTCAGGTAGGTTTTGTGACTTTCTTCCTCAGTTCAATCCTTGACAATCTGACTTCTACAATTGTGATGGTCTCCTTACTGAGGAAACTGGCACCACCTTCAGAATACCGAAAGTAAGTGTCAGCAGCTTTGAGCCTCATCTGTTGAACCTTCTAGTAGGAGCAAAGATATTATGATTTACTCTCATATTTGGTCTAAAGTTATTTGATCTCGGAATATCAATCTTGATTTCCATAAGTCTCAAGAGGTATTGATATTCGAACTCGAGAGAAGATCAGAAAGAACAAGGGATGTACATGTGTAAGCAAGTTAGATGTCTATACATTATCAAAAAAAAGAAGTTAGATGTCTATAAGAGAAATGACAAGCCCAGATGCTTTCAGGATGCAACTTTGGAGTAGCTCAAGGTTCTTGTATTACAATTGTGGGAATTTTTTAAAATGAGAGTCACTTGAGTTAAATTTTTGATTTAATAAGGCAGTGAATGGTCGTATGGTGATGCGATGTTTAAATGCATTAAGTAACTTCACCCTAGCTATATCAATAAGTATCTTCTAGAACTTTACGCTTATCTTTTAGCAAATAATCATGGTTGTGTTTCTGTGCAAGTATAGACTAGACTCTCTTGTATCTCAGACTACATTATTCATTTTGAGTTATTTTCCAGAATTCTGAACCTTTTCTAGCTTTTGTTTGTTCAGCCTTAACAGGTGGATCTGGTTTTCAAATTAACAATCTTCAAAGTTTGCAGATTGTGGATATCCCTGCCCCTTGTACTGTAAAACTTAATATCTAGGGATAGGCCTGAGAAACTTTTCCTGAGATAAATATTGACAATTTCTAATTACTTTGAGCACCCGAGTGTGTGGCCTAGTGGTCAGTGAAGTGGTTGAGAGCCATGAGGTCTCAGGTTCAAATCTCAGCTAGAGACAAAAATTCTAGGTGATTCTTCCAACTGACCTAGCCTTGGTGAATGTAGTTCCTGGAACCTGTTGCTGGTGGGAGGGGGCACGTATCCCGTGGAATAAGTCGCGGGTGAAAGCTGGCCCAGACACCATGGTCATCAAAAACAATAAATTACTTTATCTTTCTCCTAGACTACCTGTTTCTTGCTCGGTATCCTTTTTCTGAAGGCTCTGTTGTATTTATTGTGAAGTATATAATCTGTTAATTATTTGTTCCCAGGCTTCTTGGCGCTGTTGTTGTTATAGCAGCAAATGCCGGTGGAGCATGGACTCCCATAGGTGATGTTACAACTACAATGCTCTGGATACACGGCCAAGTATCCACGTTACCAACGATGAAGGTTTTTGAATTTTTTTATCTCATTGCTTCTATTTATTTACTAGTTTCTGAGTACGTGCGTTGCACATGTGACCCATGCAAGTTTTTATAGATCCATTACAACGATTAAGTATATATGATTAGTAATAAAACAACAATTACAAAAAAAAAAAAATTAAAAAGGGTGACAAAAACAACATTTACAAACTTTGAACTTTGTTTAGTAGTTAGCAAATTTTCAATTATGTCACAAATGGCTAACAGAGCCCCAAAAAAGTACAGACTTACGAAAATAAAAAATTCAAGAAAATTAAATTAAAGAAGTCTAATATATATAGAGAAAACACAGAAAATGAATAGAGAAGGAAAAATATACAACATACACATCCTTTCTTAAACTTTAATCATAACAATATAGAGGTAAAACAATATACAAAATCCATACATATTTTTTTGAAATTTTTGCTGGTGACTTTCATAACCAATCAAAATTGTAGAGTCTTCTTCATTGAGTTAGAATGAATCAAATATTACAAAATTAAATATAAGTGCTTCACTAGTTTGATAATATAATGACAAAGGATAATTTTGTTGGGGGTCTCATAAAACAAAAAAAATATGAGTTTATATAGATAAAAGTGCAGAAAATCCAAAAGATATTATTAAGTTTCAAATTAAACATTTGGAGGTTATGATTATTAAAAGCATGTAATATCAAGATATTAATTGATAGGTAATTATATATAATTCATGAATGTGAATATTTAAAGTAAATAAATAATCATAATAAATAAATGAAGAAAGAAAAAGTTTGGTGAAAATGATATTTGTTGTTTCAATTTGAGAACTTATACAATCTGAAATGAATAATAATAACATAAACCAATTGGGGAAGAACAAAAAAAAATCTTTAATCTCAATAAATATATGCATATCTATACGAAATTTCGTGGTAGAGCAAGAGATGGTTGAATCCAAACGGTTGGTATTAACTCCTCCTTTGGGCTCTTCATTGTATATTTATAAGTTATTATAACGCTTCATTATTTTTTCATTTATTAGCACAGTAATTAATAAAAAGATAATTATGTGCAATTTAAATGTGATTTAACAAAATTTTTTAAATTATTATGTCACTTCCCTTTTTCACTTTTTTTTAGCTATTGCCCCCCTATTCAACTACTTAGTTGCTCACAATGAAAAAAAGAAACATTGTATGGCTTGACTACAAGAAGTTGAGTTTTGTCAAACTGAAGATATTAGCGGTTTTTGGGATTATTTGATGGAACAGTTATCTAATTTAAGTCATTAAGTAGTAGAAAATGATAAGTTGTAACATCTAACCATTGTAATTATTGATTTTAACTTTAAAAGATTTTAATAAAAAAAATAAGTGAAGGGCATTTTCGTAATTCAACTTTGAACTTAAAATCTTCCCACTTATAATAATATATGATATATGTACATCTTTCCTTGTGTTATAATGAAGGAAACAATCTTTAGGGACGAAGGGAGAGAATTATTATCAAATAAGCACTGGATGGTTGTCATTTCGTATAGCTTCCAATATTCGAAGATGATTAGTCTAAATGCAATGATATTCATAGCATTGTTGATGTCATTTTGATTGTACACGCTGCCTGAAAACATGTTTGCATTGGCTTAGATGCATTCTGTAACCGAATATTATATTGAGGAATTCACATTTAAGTTTGAATGAATATATATTTGAGACTATGGATGAAGGTAGTGCTGAAATGAATGAAAGAACCATACAGCTCAGTCTGTATTCTCTCAAACTGCACTTATTATGGAATAAAGTATGGATGATGGAAAAGAAATATGTAACTTTTCTGTGGAGGATGGTTATTTCAGTGCTGCCACTGGTTCTATCCACCGTGCATATTCATTTAAAAAAGCATTTTTCACTTGGTTATATTTGGTAAATTAGAACCTGCCAGATCATGTCTAAACCTGTATAATAGTCTTCACTTAAGAACTCTTTACTTCAGTTGCCAACTGAAGTCTCTATTTCAGTTCTGGTAACAGTGCAATGCACTTTATCTTTTCGCAGGATTTATTTCTACCGTCAGTTGTTTCTCTAGCTGTTCCTTTGGCTCTGCTGTCCCTTACAAGGTATATTTCTAGCATAGACCTGAAGAGCTTCTTGAATTTCGGAAATATTTTAAGAAATAGAGTGGAGATGAAACTATATTAGAAATTATTTGTGTTCAGTGAAGTGAATGGGAAAGGACAAAACTCCGCTGAGGTTCTGGCATCCGAACAGATGGCTCCTCGAGGACAGCTAGTTTTCGCGGTTGGACTTGGGGCTTTAGTGTTTGTACCAGTTTTCAAGGCCTTGACTGGCCTTCCACCGTACATGGGTATGCTGCTTGGACTGGGAGTTCTTTGGATAATCACAGATGCGATCCACTATGGAGAATCTGAAAGACAGCGGCTGAAAGTACCACAGGCTTTATCACGCATTGACACTCAAGGAGCTCTTTTCTTCCTTGGAATCCTATTGTCCGTTAGCAGGTATTGCAGAATCCTTTGGGTTTTATAATACTTACAGCAGCATGGCAATCAAAAAGTTCATGCAGAACTCTTTTCTTGATAGAATAGATTCATACATCATAACCCTAAAATCATTTTAAACCAGATGTTGAGAATTAACCCTGTTCAAAAATTTGCCATCCAGATCATTTGGCATTATATCATTTCTTAGTCTTGATTAACAGTGTAACCACTATAAGTGAAATCATTGGGGGAAATGGGAAGTGGTTCTTATTTTACTTCTGCGGGTATGATGGGTGTAGGATCCATTACTCTATTTAGCTCATGCATTGTGTGACTATCAACCATCATCCATGCACATCTGAATTAGATAAATAACATGACTAGTCATTCTGGCATATTAACATCTTTTCCATAGCCTGGAAGCAGCAGGTATTCTGCGAGAATTGGCAAATTACCTTGATGCCCATATACCAA</genome_strand>
        <mrna_strand>GAAGTTAGTGAAATAGTGTTCTTTTTGCTTGGTGCGATGACCATTGTTAAGATAGTTAATGCTCATCAGGGATTTAAGCTGGTTACAGACAACATCACTACTCGCAAGCCAATAACTCTGCTTTGGGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGGTTTTGTGACTTTCTTCCTCAGTTCAATCCTTGACAATCTGACTTCTACAATTGTGATGGTCTCCTTACTGAGGAAACTGGCACCACCTTCAGAATACCGAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCTTGGCGCTGTTGTTGTTATAGCAGCAAATGCCGGTGGAGCATGGACTCCCATAGGTGATGTTACAACTACAATGCTCTGGATACACGGCCAAGTATCCACGTTACCAACGATGAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTATTTCTACCGTCAGTTGTTTCTCTAGCTGTTCCTTTGGCTCTGCTGTCCCTTACAAG...................................................................................................TGAAGTGAATGGGAAAGGACAAAACTCCGCTGAGGTTCTGGCATCCGAACAGATGGCTCCTCGAGGACAGCTAGTTTTCGCGGTTGGACTTGGGGCTTTAGTGTTTGTACCAGTTTTCAAGGCCTTGACTGGCCTTCCACCGTACATGGGTATGCTGCTTGGACTGGGAGTTCTTTGGATAATCACAGATGCGATCCACTATGGAGAATCTGAAAGACAGCGGCTGAAAGTACCACAGGCTTTATCACGCATTGACACTCAAGGAGCTCTTTTCTTCCTTGGAATCCTATTGTCCGTTAGCAGGTATTGCAGAATCCTTTGGGTTTTATAATACTTACAGCAGCATGGCAATCAAAAAGTTCATGCAGAACTCTTTTCTTGATAGAATAGATTCATACATCATAACCCTAAAATCATTTTAAACCAGATGTTGAGAATTAACCCTGTTCAAAAATTTGCCATCCAGATCATTTGGCATTATATCATTTCTTAGTCTTGATTAACAGTGTAACCACTATAAGTGAAATCATTGGGGGAAATGGGAAGTGGTTCTTATTTTACTTCTGCGGGTATGATGGGTGTAGGATCCATTACTCTATTTAGCTCATGCATTGTGTGACTATCAACCATCATCCATGCACATGTGAATTAGATAAATAACATGACTAGTCATTCTGGCATATTAACATCTTTTCCATAGCCTGGAAGCAGCAGGTATTGTGCGAGAATTGGCAAATTACCTTGATGCCCATATACCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U603118" ref_strand="+" ref_description="SGN-U603118 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|133711804|gb|ABO36622.1| (e_value=8e-56) copia; (*SWP) sp|P10978|POLX_TOBAC (e_value=2e-23) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum; ">
      <seq>cctagagttttgtgaacattgtgtttttggaaaactacatcgcaacaagtttccaaaggccattcatagaacaaaaggcacacttgattatatccattctgattgctggggtccatgccgtgttgagtctttgggaggctgcagattttttgtgtccattattgatgactactcaaggatgacttgggtgtacatgatgaagcataaaagtgaagccttccagaagtttaaggagtggaaaattttgatggaaaatcaaacagggaagaagatcaagaggttgcgaactgataatgggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="+" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="67642" stop="68540"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="67942" g_stop="68240" g_length="299"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="299" r_length="299" r_score="0.983"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="+" ref_id="SGN-U603118" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>299</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U603118" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="67942" e_stop="68240"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTAGAGTTTTGTGAACATTGTGTTTTTGGAAAACTACATCGCAACAAGTTTCCAAAGGCCATTCATAGAACAAAAGGCACACTTGATTATATCCATTCTGATTGCTAGGGTCCATGCCGTGTTGACTCTTTGGGAGGCTGCAGATTTTTTGTGTCCATTATTGATGACTACTCAAGGATGACTTGGGTGTACATGATGAAGCATAAAAGTGAAGCCTTTCAGAAGTTCAAGGAGTGGAAAATTTTGATGGAAAATCAAACAGGGAAGAAGATCAAGAGGTTGCAAACTGATAATGGGC</genome_strand>
        <mrna_strand>CCTAGAGTTTTGTGAACATTGTGTTTTTGGAAAACTACATCGCAACAAGTTTCCAAAGGCCATTCATAGAACAAAAGGCACACTTGATTATATCCATTCTGATTGCTGGGGTCCATGCCGTGTTGAGTCTTTGGGAGGCTGCAGATTTTTTGTGTCCATTATTGATGACTACTCAAGGATGACTTGGGTGTACATGATGAAGCATAAAAGTGAAGCCTTCCAGAAGTTTAAGGAGTGGAAAATTTTGATGGAAAATCAAACAGGGAAGAAGATCAAGAGGTTGCGAACTGATAATGGGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575023" ref_strand="+" ref_description="SGN-U575023 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|133711804|gb|ABO36622.1| (e_value=0) copia; (*ATH) AT4G23160.1 (e_value=3e-26) | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50; (*SWP) sp|P10978|POLX_TOBAC (e_value=2e-68) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum; ">
      <seq>ganggnntgctcgacatcgtacagtcagaaatacaccacagcagaacggtgtagctgagcggatgaatcaaacacttctggagagagcaaggtgcatgctctctaatgctgggctagatagaagattctgggcagaagcggttagtacagcttgctacttgattaaccgcggaccacatacaggcatacagtgcaagacacctatggagatgtggtcagaaaaagctgctgattattcaaatctgaaagcttttggttgtatggcctactatcacgtcagtgaaggtaagttagaaccaagagctaaaaagggagtatttgtgggctacggagatggagtgaaaggtttcagaatctggtctccagcagaaaagagggttattatgagcaggaacgttgtctttgatgaaagttctctgcttagaaccattgtgaagcctacaactacgtcagaaactaggagtcttgacaaacaggtggagtttcaagtcattcagaacgagagcgatttaaaggaacctgaagaggaggatcaagagccacagactgaaactgatattccagaatctatgccatcagatatccatcagagtatagctcaagatcggccaaggagggttggagttcggccacctacgaggtatggttttgaggacatggtgggttatgcactgcaggctgctgaagaggtagatacatctgagccgtctacttacaaagaagccattttaagttctgattctgaaaaatggtttgccgatatgggagatgagatggagtccctacacaagaatcagacatgggatctggtcatacagccttcggggagaaagattattacttgcaaatgggttttcaagaagaaggaagggatatcaccagcagaaggagtcaagtataaagtcagggttgttgctagaggtttcaaccaaagagagggagtggactacaatgagatcttctcaccagtggtcagacatacttccatccgagtgttactagcgatagttgcacatcagaatctggagcttgaaacacttgatgtgaagacagcgtttctacatggagagttggaggaagagatatacatgactcagccggatggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="+" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="67984" stop="69688"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="68283" g_stop="69388" g_length="1106"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1106" r_length="1106" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="+" ref_id="SGN-U575023" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>1106</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U575023" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="68283" e_stop="69388"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGGATTGCTCGACATCTTACAGTTAGAAATACACCACAGCAGAACGGTGTAGCTGAGCGGATGAATCAAACACTTCTGGAAAGAGCAAGGTGCATGCTCTCTAATGCTGGGCTAGATAGAAGATTCTGGGCAGAAGCGGTTAGTACAGCTTGCTACTTGATTAACCGCGGACCACATACAGGCATACAGTGCAAGACACCTATGGAGATGTGGTCAGGAAAAGCTGCTGATTATTCAAATCTGAAAGCTTTTGGTTGTACGGCTTACTATCACGTCAGTGAAGGTAAGTTAGAACCAAGAGCTAAAAAGGGAGTATTTGTGGGCTACGGAGATGGAGTGAAAGGTTTCAGAATCTGGTCTCCAGCAGAAAAGAGGGTTATTATGAGCAGGAACGTTGTCTTTGATGAAAGTTCTCTGCTTAGAACCATTGTGAAGCCTACAACTACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGATCCACAGACAGAAACTGATATTCCAGAATCTATGACATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTTTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCTGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAACGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACTCAGCCGGATGGT</genome_strand>
        <mrna_strand>GANGGNNTGCTCGACATCGTACAGTCAGAAATACACCACAGCAGAACGGTGTAGCTGAGCGGATGAATCAAACACTTCTGGAGAGAGCAAGGTGCATGCTCTCTAATGCTGGGCTAGATAGAAGATTCTGGGCAGAAGCGGTTAGTACAGCTTGCTACTTGATTAACCGCGGACCACATACAGGCATACAGTGCAAGACACCTATGGAGATGTGGTCAGAAAAAGCTGCTGATTATTCAAATCTGAAAGCTTTTGGTTGTATGGCCTACTATCACGTCAGTGAAGGTAAGTTAGAACCAAGAGCTAAAAAGGGAGTATTTGTGGGCTACGGAGATGGAGTGAAAGGTTTCAGAATCTGGTCTCCAGCAGAAAAGAGGGTTATTATGAGCAGGAACGTTGTCTTTGATGAAAGTTCTCTGCTTAGAACCATTGTGAAGCCTACAACTACGTCAGAAACTAGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGAGCCACAGACTGAAACTGATATTCCAGAATCTATGCCATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGCTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTCTGAAAAATGGTTTGCCGATATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGTCAGGGTTGTTGCTAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCCGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAAACACTTGATGTGAAGACAGCGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACTCAGCCGGATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U604002" ref_strand="+" ref_description="SGN-U604002 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|133711804|gb|ABO36622.1| (e_value=2e-152) copia; (*ATH) AT4G23160.1 (e_value=1e-36) | Symbol: None | protein kinase family protein, contains Pfam domain PF00069: Protein kinase domain | chr4:12129496-12134198 FORWARD | Aliases: F21P8.50, F21P8_50; (*SWP) sp|P10978|POLX_TOBAC (e_value=4e-86) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum; ">
      <seq>gggtttccaagttccagggaaggaaaatcacgtctgcaagttgaagaagtccttatatggacttaagcagtctccaaggcagtggtataaaaggtttgacagctatatggtgaagttgggctatactcggagctcatatgattgttgtgtctactacaataggctcaatgatgattcattcatctatctggtgctttatgtagatgatatgttgatagctgcaaagaagaagtatgacattcagaagctgaagggtttacttagtgctgagtttgagatgaaggatctgggagccgctcggaagattttagggatggagatcattagagacagagagagaaggaaacttttcttgtcacagagaagctacattcagaaggtcttggcgaggtttggcatgtcttcatctaagcccattgatacccccagtgctgccaatatccatctcactgccatgttcgctccacagtcagaagaagagaaggagtatatgtcacgagtcccttatgccagtgccgtaagaagtttgatgtatgctatggtctgtacaaggccagatttagcacatgcagtcagtgtagtgagcagattcatgggacaaccagggagagaacattggcaggctgtgaagagaattttccggtaccttagaggtacatctgacgttggtctcatttatggaggtgatactcagtgcttggttactggctattctgattcagactatgctggagatgttgacacaagaagatcgatgactggctatgtgtttaccctgggaggatctgtcgtcagttggaaggcaacttt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="+" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="69086" stop="70484"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69385" g_stop="70184" g_length="800"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="810" r_length="810" r_score="0.966"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="+" ref_id="SGN-U604002" ref_strand="+">
        <total_alignment_score>0.966</total_alignment_score>
        <cumulative_length_of_scored_exons>800</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U604002" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69385" e_stop="70184"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGGTTTCCAAGTCCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGATATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCAGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTATCTTAGAGGTACATCTGACGTTGG--TC--------AGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</genome_strand>
        <mrna_strand>GGGTTTCCAAGTTCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGGTATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCGGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAAGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTACCTTAGAGGTACATCTGACGTTGGTCTCATTTATGGAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTGGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U571050" ref_strand="+" ref_description="SGN-U571050 Tomato 200607#2 [16 ESTs aligned] (*GB) gi|14571808|dbj|BAB61098.1| (e_value=1e-144) phi-2 [Nicotiana tabacum]; (*ATH) AT3G19290.1 (e_value=8e-62)  Symbol: None | ABA-responsive element-binding protein 2 (AREB2), almost identical (one amino acid) to GB:AAF27182 from (Arabidopsis thaliana); contains Pfam profile PF00170:bZIP transcription factor; identical to cDNA abscisic acid responsive elemen... ; ">
      <seq>gggactccttgcaaaacttgtacctgccaaaacggattttgtttgtcgtaaccatgggatcttacctgaacttcaagaactttgctgacacatcacaaccagagagcagtgggaataatagtaattcttttttggcccaacaatcttccatatactcgtttacctttgatgagctgcaaaatacatgtggacttggaaaagattttgggtcgatgaatatggatgacctcttgaagaacattgaagagtctcaagcgttgtcatcttctgctgctttagggggtaatttgcagagacagggttctttgacactgcctaggacacttagtcagaaaactgtagatgaagtatggagagactttcagaaagagagtgttgttgctaatgatgcaagtgggactggaggatcaaactttgggcagcgggaatctaccttgggagaaatgacattagaagagtttttggttagagcaggggccgtgcaagaagatatgcaaccagctggatactcaaatgatgttacatttgctagtggtttcactcaacctagtagtagtgtgaccatagcatttcaacaagcaacccaaaaccctggacatcaaattgcagcgaataacatatttaatgtggtcagtaccaccacgtcttcaccacagcagcccctttttcccaaacaaacaactgtggaatttgcatcacccatgcaattagggagcccagggaaaaggcttcccatgtctaatccgtctgcaaatactagtagtgtcatgcagggtggtgttatgaccatgccagtaaaaggagtatcccctggaaatcttgatacatcttctctttcaccttcaccttatgcatgtggtgaaggtggaagaggaaggagatcatgcacctcttttgaaaaagttgttgagagaaggcgtaagaggatgataaagaacagggagtctgcggccagatcaagggatcggaagcaggcatatactttagagttggaagctgaagtagcaaagcttaaagaaattaagcaagagttgcagaagaaacaggctgaatttatcgagaagcagaaaaatcagttattggaaaagatgaatgtgccatgggaaaataaactaatatgcttgcgaaggacagtgacgggaccttggtagtcagtagaagagcaaattcccgagtaaacactcggagaattggtagacaggagattgaagtgaaatagcttttccttcctcttttttgtttcaacaaacaagttcagagcctgctcctcgaccctcctcccagcctgtgaattaaaatatgttctaattcacatatgttggtcacaggatagataactttatgtatcgactatagtacaggacaggtgctgtgtacctgtacgttatgtaaacaatgttcttgcataaagtttcctcatgtgctttttttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="92876" stop="88203"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92579" g_stop="92545" g_length="35"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="35" r_length="35" r_score="0.914"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="92544" i_stop="91200" i_length="1345">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.845" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="91199" g_stop="90261" g_length="939"/>
          <reference_exon_boundary r_type="cDNA" r_start="36" r_stop="974" r_length="939" r_score="0.999"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90260" i_stop="89395" i_length="866">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.983" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="89394" g_stop="89323" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="975" r_stop="1046" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="89322" i_stop="89229" i_length="94">
            <donor d_prob="0.998" d_score="1.00"/>
            <acceptor a_prob="0.990" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="89228" g_stop="89199" g_length="30"/>
          <reference_exon_boundary r_type="cDNA" r_start="1047" r_stop="1076" r_length="30" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="89198" i_stop="88861" i_length="338">
            <donor d_prob="1.000" d_score="0.00"/>
            <acceptor a_prob="0.853" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="88860" g_stop="88503" g_length="358"/>
          <reference_exon_boundary r_type="cDNA" r_start="1077" r_stop="1434" r_length="358" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-U571050" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1434</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U571050" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92579" e_stop="92545"/>
          <exon e_start="91199" e_stop="90261"/>
          <exon e_start="89394" e_stop="89323"/>
          <exon e_start="89228" e_stop="89199"/>
          <exon e_start="88860" e_stop="88503"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTACTCCTTGCAAAACTTGTACCTGCCAAAACGGGTAAACTTATTTTCTCTCTTCTCCCATTTTTACATATTAATTTTTTTCTCTTGATTTTTCACATATTATTATCTCATGTCCTAATCAAACTCGAAATGAAAAATCTTCACTCTTTTCTTGATTTTTTTTTGATGTTTAATTTGTTTTCTCAATTACAAATATGTTATTACTGATCTGACATTGTTTTAATTTTTTCGAAATGATTTATCAAAATGAGATAGTTGAAGGGTAGTTGATTGATTAATTAATTTGATGATGTTTTTTGGCACTTGAAATTATCTCTTATAGATCCATGCTTTTTTTTGTTTATGAATTCTATGATTCTGTATAGTGGGCAGTACTCGATGAATGAGTTCGATACTTAATTAGACAGTTGAATGAAGTCTTGATGTTAGTATAAAGTTTTAGATCCAAATATGTTGATGTTGAATGAAATTATGAGCTCTGAACAAAGTTAATAGATCCACTGTGTCGACAGTTTTGAGTTTTTATTATTTTGTGGAATTTACTTGAATAGTTGACTCTGGTTGAGTAGTTGATAGTTGAATGAAGTTTATCTTAGCTTCTGGGTTTTGTATTTTGGATCCAATCTTAACATAAGTGTTTTGCATTTTGAATGAGTTTTTGGACTTGAAATGAGTTTGAAGCAAAGATGGATCTACGGTGTAGCGTATCCCCTCAACAATTAGGTATTTTTTTTAAAAGAAAAATTATGTGTATATATAGATTGTGGATCTCCGAACATAAGATTAAACATTGGCTCAGTGGTTGAGGAATTCAAAATTCGGTTAGAGGTTTCAAGTTTGAAGCTCAAACACTACATTTTTATTTTTCGAATCCCCTTAGTCAAAATCATGGATCCGCCACGGGTTTGAAGAATGTTAATTGGTGCTAATTTTTTTAAATCTAAATGTGTACAAAAGGTGGTGGACTGAATCAGGTCAAACCATTAAATATAGATCTAGTTTGTATTTCATTCTCTCCATCATTGAGGTATTATAATCTGTGTTTAACCGAGATCTGCCTAATCATGATATTTCAGTTTTTCTGAGCTGTAATGAGCAAGATGTTAAGTGTTGTATTTTTCTTTACTGTTCTAATGTCCTTAAAGTGATCATCTTCAAGTCGGCAGTGAAGATTATATGTTTGAGCTTGTACGTAATCACCAATGTTGTAGCATTTTGTTAGGAAATGATTAAAATTCTTTGGAGGTGGTATACAATATTTGTTTATTGGTGAACATTCTATTATATGTTGTTGGACTACACCGAAATATAAAAATTGATTCCCGTGGTCGACTTCTACTGTTGTTTCTTACTGTCTTACTAATGAACTTTTGGATCAGATTTTGTTTGTCGTAACCATGGGATCTTACCTGAACTTCAAGAACTTTGCTGACACATCACAACCAGAGAGCAGTGGGAATAATAGTAATTCTTTTTTGGCCCAACAATCTTCCATATACTCGTTTACCTTTGATGAGCTGCAAAATACATGTGGACTTGGAAAAGATTTTGGGTCGATGAATATGGATGACCTCTTGAAGAACATTGAAGAGTCTCAAGCGTTGTCATCTTCTGCTGCTTTAGGGGGTAATTTGCAGAGACAGGGTTCTTTGACACTGCCTAGGACACTTAGTCAGAAAACTGTAGATGAAGTATGGAGAGACTTTCAGAAAGAGAGTGTTGTTGCTAATGATGCAAGTGGGACTGGAGGATCAAACTTTGGGCAGCGGGAATCTACCTTGGGAGAAATGACATTAGAAGAGTTTTTGGTTAGAGCAGGGGCCGTGCAAGAAGATATGCAACCAGCTGGATACTCAAATGATGTTACATTTGCTAGTGGTTTCACTCAACCTAGTTGTAGTGTGACCATAGCATTTCAACAAGCAACCCAAAACCCTGGACATCAAATTGCAGCGAATAACATATTTAATGTGGTCAGTACCACCACGTCTTCACCACAGCAGCCCCTTTTTCCCAAACAAACAACTGTGGAATTTGCATCACCCATGCAATTAGGGAGCCCAGGGAAAAGGCTTCCCATGTCTAATCCGTCTGCAAATACTAGTAGTGTCATGCAGGGTGGTGTTATGACCATGCCAGTAAAAGGAGTATCCCCTGGAAATCTTGATACATCTTCTCTTTCACCTTCACCTTATGCATGTGGTGAAGGTGGAAGAGGAAGGAGATCATGCACCTCTTTTGAAAAAGTTGTTGAGAGAAGGCGTAAGAGGATGATAAAGAACAGGGAGTCTGCGGCCAGATCAAGGGATCGGAAGCAGGTGAATTTATATTTTGAATTTGGCTTATGAGTTAATTCTTTTGTTTCTGATTCTTGAGGCCTGTGCCTGTTTTTTCTGGTTTCCTTTGTCTTTTAAAATCTGTCACTCTGGTCAAGGATTCGATACAATTCAACAGAATCTAAGAAATGATCAAAATAGAAATGATTTTCGAATTTGATTCTATAAAAATTCCTGTTTCATTTTTGAATGAAGTTAGACGATAGTCCAGGTGCACTTCTTACTTCTATCTATACATTTCCAGATATCATTGCTTCGATACGGTCCCGAATCCGTTTCACTTCATTCTTCCCCGAGCGGGAATACGTCGCTTACAATATTATTAAAGAAAGGGCGCTTATCAGCTCTACAACTTTTAGTGCCATATCTTCCAAAACCAAGTTGTGTACCGTCCGGTTTGCAACCCCTACTACATCTGCCTTTACAATATTTACTATATTTTGTACATTTCGGATATAGCATGTCCCCCCTTTTTTTGACTATATGAAATCTAATTCATTCTCCCATCGAGAGGATCAAAAGCGCGATAAAGAAAGATAGATTCATAGTGGGGTGATGTGCCTGCGCTAGGTATTTTCTTTCTTCTGGCCGTAGGTGTGATCAAACTACTCATTCATTCAACTCAATGACACAAATGAATTAGTAGTTGGCAGAGTTTCTCACACCTCCTTTTTCTCCTTACTTTAGTTTAGACCTTGCAATGCATGTGGGGGTGGGGTGGGGGAGTCGTGAGAGTGCGAGGAAGATTTTAACATGCTGGGATGCTCCAGGCTGGTTTGAGTATCAGTTTAGTGTTATGAAATGATAATGCCATTAACGGACTTCTTCATTTGTCTGGGATTTGTCAGGCATATACTTTAGAGTTGGAAGCTGAAGTAGCAAAGCTTAAAGAAATTAAGCAAGAGTTGCAGAAGAAACAGGTATGATAACCATGTTTGCGAATTACTGGATTACTTTAATATTCTTGATAAGTGTTATGGTTGTGTAACCACGGGTTTTGAATGCTTCATGCAGGCTGAATTTATCGAGAAGCAGAAAAATCAGGTATAGACTTCTTTCCTGCTGTCAATATGTTGTACGAATTACGATTAAAATACTTTTTCCTACTTAATCATAGGACTAGATACAGGGATATTGTGAATTAAACAATCTAAGCAATAGAATTAGCAATTGAAATAAGGGCAGGAAGTAGATAATTTACTAATAGCAAAATGATTAAAGCTTCAAATGGCTGTACAGCTTTTCTATAAAAGTCATCAGCTGTTAAGACGTGATAACTTCGCGAAGGAAACTGTGTATGTGATTTGTTAAGCCAAGTTGTTCGTCTATAGGTCAAATGAGCTAAATGTGGTTGTTAAGTAGTCTGTTTTGTCCAATTACAGTTATTGGAAAAGATGAATGTGCCATGGGAAAATAAACTAATATGCTTGCGAAGGACAGTGACGGGACCTTGGTAGTCAGTAGAAGAGCAAATTCCCGAGTAAACACTCGGAGAATTGGTAGACAGGAGATTGAAGTGAAATAGCTTTTCCTTCCTCTTTTTTGTTTCAACAAACAAGTTCAGAGCCTGCTCCTCGACCCTCCTCCCAGCCTGTGAATTAAAATATGTTCTAATTCACATATGTTGGTCACAGGATAGATAACTTTATGTATCGACTATAGTACAGGACAGGTGCTGTGTACCTGTACGTTATGTAAACAATGTTCTTGCATAAAGTTTCCTCATGTGCTTTTTTTGTT</genome_strand>
        <mrna_strand>GGGACTCCTTGCAAAACTTGTACCTGCCAAAACGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGTTTGTCGTAACCATGGGATCTTACCTGAACTTCAAGAACTTTGCTGACACATCACAACCAGAGAGCAGTGGGAATAATAGTAATTCTTTTTTGGCCCAACAATCTTCCATATACTCGTTTACCTTTGATGAGCTGCAAAATACATGTGGACTTGGAAAAGATTTTGGGTCGATGAATATGGATGACCTCTTGAAGAACATTGAAGAGTCTCAAGCGTTGTCATCTTCTGCTGCTTTAGGGGGTAATTTGCAGAGACAGGGTTCTTTGACACTGCCTAGGACACTTAGTCAGAAAACTGTAGATGAAGTATGGAGAGACTTTCAGAAAGAGAGTGTTGTTGCTAATGATGCAAGTGGGACTGGAGGATCAAACTTTGGGCAGCGGGAATCTACCTTGGGAGAAATGACATTAGAAGAGTTTTTGGTTAGAGCAGGGGCCGTGCAAGAAGATATGCAACCAGCTGGATACTCAAATGATGTTACATTTGCTAGTGGTTTCACTCAACCTAGTAGTAGTGTGACCATAGCATTTCAACAAGCAACCCAAAACCCTGGACATCAAATTGCAGCGAATAACATATTTAATGTGGTCAGTACCACCACGTCTTCACCACAGCAGCCCCTTTTTCCCAAACAAACAACTGTGGAATTTGCATCACCCATGCAATTAGGGAGCCCAGGGAAAAGGCTTCCCATGTCTAATCCGTCTGCAAATACTAGTAGTGTCATGCAGGGTGGTGTTATGACCATGCCAGTAAAAGGAGTATCCCCTGGAAATCTTGATACATCTTCTCTTTCACCTTCACCTTATGCATGTGGTGAAGGTGGAAGAGGAAGGAGATCATGCACCTCTTTTGAAAAAGTTGTTGAGAGAAGGCGTAAGAGGATGATAAAGAACAGGGAGTCTGCGGCCAGATCAAGGGATCGGAAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATATACTTTAGAGTTGGAAGCTGAAGTAGCAAAGCTTAAAGAAATTAAGCAAGAGTTGCAGAAGAAACAG..............................................................................................GCTGAATTTATCGAGAAGCAGAAAAATCAG..................................................................................................................................................................................................................................................................................................................................................TTATTGGAAAAGATGAATGTGCCATGGGAAAATAAACTAATATGCTTGCGAAGGACAGTGACGGGACCTTGGTAGTCAGTAGAAGAGCAAATTCCCGAGTAAACACTCGGAGAATTGGTAGACAGGAGATTGAAGTGAAATAGCTTTTCCTTCCTCTTTTTTGTTTCAACAAACAAGTTCAGAGCCTGCTCCTCGACCCTCCTCCCAGCCTGTGAATTAAAATATGTTCTAATTCACATATGTTGGTCACAGGATAGATAACTTTATGTATCGACTATAGTACAGGACAGGTGCTGTGTACCTGTACGTTATGTAAACAATGTTCTTGCATAAAGTTTCCTCATGTGCTTTTTTTGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567141" ref_strand="+" ref_description="SGN-U567141 Tomato 200607#2 [5 ESTs aligned] ">
      <seq>gggtaaacttattttctctcttctcccatttttacatattaatttttttctcttgatttttcacatattattatctcatgtcctaatcaaactcgaaatgaaaaatcttcactcttttcttgattttttttgatgtttaatttgttttctcaattacaaatatgttattactgatctgacattgttttaattttttcgaaatgatttatcaaaatgagatagttgaagggtagttgattgattaattaatttgatgatgttttttggcacttgaaattatctcttatagatccatgctttttttgtttatgaattctatgattctgtatagtgggcagtactcgatgaatgagttcgatacttaattagacagttgaatgaagtcttgatgttagtataaagttttagatccaaatatgttgatgttgaatgaaattatgagctctgaacaaagttaatagatccactgtgttgacagttttgagtttttattattttgtggaatttacttgaatagttgactctggttgagtagttgatagttgaatgaagtttatcttagcttctgggttttgtattttggatccaatcttaacataagtgttttgcattttgaatgagtttttggacttgaaatgagtttgaagcaaagatggatctacggtgtagcgtatcccctcaacaattaggtattttttttaaaagaaaaattatgtgtatatatagattgtggatctccgaacataagattaaacattggctcagtggttgaggaattcaaaattcggttagaggtttcaagtttgaagctcaaacactacatttttatttttcgaatccccttagtcaaaatcatggatccgccacgggtttgaagaatgttaattggtgctaatttttttaaatctaaatgtgtacaaaaggtggtggactgaatcaggtcaaaccattaaatatagatctagtttgtatttcattctctccatcattgaggtattataatctgtgtttaaccgagatctgcctaatcatgatatttcagtttttctgagctgtaatgagcaagatgttaagtgttgtatttttctttactgttctaatgtccttaaagtgatcatcttcaagtcggcagtgaagattatatgtttgagcttgtacgtaatcaccaatgttgtagcattttgttaggaaatgattaaaattctttggaggtggtatacaatatttgtttattggtgaacattctattatatgttgttggactacaccgaaatataaaaattgattcccgtggtcgacttctactggtgtttcttactgtcttactaatgaacttttggatcagattttgttgtcg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0074N01-wioKI/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0074N01.2" temp_strand="-" temp_description="C00HBa0074N01.2  CU915751.4 htgs_phase:3 submitted_to_sgn_as:C04HBa0074N01 sequenced_by:sanger upload_account_name:uk">
        <position start="92846" stop="90887"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="92546" g_stop="91187" g_length="1360"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1357" r_length="1357" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0074N01.2" gen_strand="-" ref_id="SGN-U567141" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>1360</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0074N01.2" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U567141" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="92546" e_stop="91187"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGTAAACTTATTTTCTCTCTTCTCCCATTTTTACATATTAATTTTTTTCTCTTGATTTTTCACATATTATTATCTCATGTCCTAATCAAACTCGAAATGAAAAATCTTCACTCTTTTCTTGATTTTTTTTTGATGTTTAATTTGTTTTCTCAATTACAAATATGTTATTACTGATCTGACATTGTTTTAATTTTTTCGAAATGATTTATCAAAATGAGATAGTTGAAGGGTAGTTGATTGATTAATTAATTTGATGATGTTTTTTGGCACTTGAAATTATCTCTTATAGATCCATGCTTTTTTTTGTTTATGAATTCTATGATTCTGTATAGTGGGCAGTACTCGATGAATGAGTTCGATACTTAATTAGACAGTTGAATGAAGTCTTGATGTTAGTATAAAGTTTTAGATCCAAATATGTTGATGTTGAATGAAATTATGAGCTCTGAACAAAGTTAATAGATCCACTGTGTCGACAGTTTTGAGTTTTTATTATTTTGTGGAATTTACTTGAATAGTTGACTCTGGTTGAGTAGTTGATAGTTGAATGAAGTTTATCTTAGCTTCTGGGTTTTGTATTTTGGATCCAATCTTAACATAAGTGTTTTGCATTTTGAATGAGTTTTTGGACTTGAAATGAGTTTGAAGCAAAGATGGATCTACGGTGTAGCGTATCCCCTCAACAATTAGGTATTTTTTTTAAAAGAAAAATTATGTGTATATATAGATTGTGGATCTCCGAACATAAGATTAAACATTGGCTCAGTGGTTGAGGAATTCAAAATTCGGTTAGAGGTTTCAAGTTTGAAGCTCAAACACTACATTTTTATTTTTCGAATCCCCTTAGTCAAAATCATGGATCCGCCACGGGTTTGAAGAATGTTAATTGGTGCTAATTTTTTTAAATCTAAATGTGTACAAAAGGTGGTGGACTGAATCAGGTCAAACCATTAAATATAGATCTAGTTTGTATTTCATTCTCTCCATCATTGAGGTATTATAATCTGTGTTTAACCGAGATCTGCCTAATCATGATATTTCAGTTTTTCTGAGCTGTAATGAGCAAGATGTTAAGTGTTGTATTTTTCTTTACTGTTCTAATGTCCTTAAAGTGATCATCTTCAAGTCGGCAGTGAAGATTATATGTTTGAGCTTGTACGTAATCACCAATGTTGTAGCATTTTGTTAGGAAATGATTAAAATTCTTTGGAGGTGGTATACAATATTTGTTTATTGGTGAACATTCTATTATATGTTGTTGGACTACACCGAAATATAAAAATTGATTCCCGTGGTCGACTTCTACTGTTGTTTCTTACTGTCTTACTAATGAACTTTTGGATCAGATTTTGTTTGTCG</genome_strand>
        <mrna_strand>GGGTAAACTTATTTTCTCTCTTCTCCCATTTTTACATATTAATTTTTTTCTCTTGATTTTTCACATATTATTATCTCATGTCCTAATCAAACTCGAAATGAAAAATCTTCACTCTTTTCTTGA-TTTTTTTTGATGTTTAATTTGTTTTCTCAATTACAAATATGTTATTACTGATCTGACATTGTTTTAATTTTTTCGAAATGATTTATCAAAATGAGATAGTTGAAGGGTAGTTGATTGATTAATTAATTTGATGATGTTTTTTGGCACTTGAAATTATCTCTTATAGATCCATGC-TTTTTTTGTTTATGAATTCTATGATTCTGTATAGTGGGCAGTACTCGATGAATGAGTTCGATACTTAATTAGACAGTTGAATGAAGTCTTGATGTTAGTATAAAGTTTTAGATCCAAATATGTTGATGTTGAATGAAATTATGAGCTCTGAACAAAGTTAATAGATCCACTGTGTTGACAGTTTTGAGTTTTTATTATTTTGTGGAATTTACTTGAATAGTTGACTCTGGTTGAGTAGTTGATAGTTGAATGAAGTTTATCTTAGCTTCTGGGTTTTGTATTTTGGATCCAATCTTAACATAAGTGTTTTGCATTTTGAATGAGTTTTTGGACTTGAAATGAGTTTGAAGCAAAGATGGATCTACGGTGTAGCGTATCCCCTCAACAATTAGGTATTTTTTTTAAAAGAAAAATTATGTGTATATATAGATTGTGGATCTCCGAACATAAGATTAAACATTGGCTCAGTGGTTGAGGAATTCAAAATTCGGTTAGAGGTTTCAAGTTTGAAGCTCAAACACTACATTTTTATTTTTCGAATCCCCTTAGTCAAAATCATGGATCCGCCACGGGTTTGAAGAATGTTAATTGGTGCTAATTTTTTTAAATCTAAATGTGTACAAAAGGTGGTGGACTGAATCAGGTCAAACCATTAAATATAGATCTAGTTTGTATTTCATTCTCTCCATCATTGAGGTATTATAATCTGTGTTTAACCGAGATCTGCCTAATCATGATATTTCAGTTTTTCTGAGCTGTAATGAGCAAGATGTTAAGTGTTGTATTTTTCTTTACTGTTCTAATGTCCTTAAAGTGATCATCTTCAAGTCGGCAGTGAAGATTATATGTTTGAGCTTGTACGTAATCACCAATGTTGTAGCATTTTGTTAGGAAATGATTAAAATTCTTTGGAGGTGGTATACAATATTTGTTTATTGGTGAACATTCTATTATATGTTGTTGGACTACACCGAAATATAAAAATTGATTCCCGTGGTCGACTTCTACTGGTGTTTCTTACTGTCTTACTAATGAACTTTTGGATCAGATTTTG-TTGTCG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>11</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="14829" PGL_stop="23402"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="14829" e_stop="15152"/>
            <exon e_start="15250" e_stop="15363"/>
            <exon e_start="20307" e_stop="20402"/>
            <exon e_start="21697" e_stop="21771"/>
            <exon e_start="22013" e_stop="22080"/>
            <exon e_start="23137" e_stop="23402"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="0.997"/>
          <exon-intron don_prob="0.949" acc_prob="0.665" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.971" e_score="1.000"/>
          <exon-intron don_prob="0.970" acc_prob="0.981" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.987" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.997">
            <gDNA_exon_boundary e_start="14829" e_stop="15152" e_length="324"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="15153" i_stop="15249" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15250" e_stop="15363" e_length="114"/>
          </exon>
          <intron i_serial="2" don_prob="0.949" acc_prob="0.665">
            <gDNA_intron_boundary i_start="15364" i_stop="20306" i_length="4943"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="20307" e_stop="20402" e_length="96"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.971">
            <gDNA_intron_boundary i_start="20403" i_stop="21696" i_length="1294"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="21697" e_stop="21771" e_length="75"/>
          </exon>
          <intron i_serial="4" don_prob="0.970" acc_prob="0.981">
            <gDNA_intron_boundary i_start="21772" i_stop="22012" i_length="241"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="22013" e_stop="22080" e_length="68"/>
          </exon>
          <intron i_serial="5" don_prob="0.998" acc_prob="0.987">
            <gDNA_intron_boundary i_start="22081" i_stop="23136" i_length="1056"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="23137" e_stop="23402" e_length="266"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14829" stop="15152"/>
              <exon start="15250" stop="15363"/>
              <exon start="20307" stop="20361"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593938" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14832" stop="15152"/>
              <exon start="15250" stop="15363"/>
              <exon start="20307" stop="20402"/>
              <exon start="21697" stop="21771"/>
              <exon start="22013" stop="22080"/>
              <exon start="23137" stop="23402"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U574430" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TGGTGTGAAGTAGAAAGTAGAAAGTCATTCATTTGCAGCATTCCCATGGCCTTATCCTCACTATCCCCTCCATTAACACATATTTCTTCAACGAAACTTCATCTCTCTTTCCCTTGTATCGTAAATCCTCATCCTCATTCCCATAATTATACCAACCTTTCTCCTCTCAATAAAAAATGGCAGACCAACGTTTCTTTCTTCCCTTCTTTCTTCAACAAGAAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCCATTGAACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAG : ATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAACTCTGCTTAATGGAAAATGGGAACTTATATACACTACATCAAAGTCTATTTTACAGATTCAG : AGACCCAAGATTTTGCGATCTAGATTGAATTATCAAGCAATAAATGTAGATACACTTCGGGCTCAGAATATGGAAGGATGGCCCTTCTTCAACCAG : GTTACTGCAGATTTGACCCCGCTGAATGCACAAAAGGTGGCAGTAAAGTTTGATTATTTCAAAATTGCTGGACTA : ATACCTATTAAAGCTCCTGGAAGAGCTAAAGGCGAGCTTGAAATTACTTACTTGGATGAAGAATTGAG : GGTATCAAGAGGTGATCTTGGCAACTTGTTCATTTTGAAAATGGTTGACCCTTCTTACAAGGTCCCTACTTGAGATTGCTACTATCAACTTTATAGAGTTACTAATTAGTGTCACATCTTATATTATAATATTATATGCCAAGTCTGTGCAAAGGATTCACAAGCATTTTCTCTCTTCAATTTAACTACTGTACAAAATTGCATTAAAAAACTTAAGTAATTTCAAACTTGTGTATATGCAGCTTTATCAAAATTTCTTGTCATAA</gDNA_template>
            <first_frame> W  C  E  V  E  S  R  K  S  F  I  C  S  I  P  M  A  L  S  S  L  S  P  P  L  T  H  I  S  S  T  K  L  H  L  S  F  P  C  I  V  N  P  H  P  H  S  H  N  Y  T  N  L  S  P  L  N  K  K  W  Q  T  N  V  S  F  F  P  S  F  F  N  K  K  T  K  D  P  T  P  I  K  Q  E  L  L  Q  A  I  E  P  L  D  R  G  A  D  A  T  P  Q  D  Q  Q  I  I  D  Q  :  I  A  C  R  L  E  A  C  N  P  T  K  E  P  L  N  S  T  L  L  N  G  K  W  E  L  I  Y  T  T  S  K  S  I  L  Q  I  Q  :  R  P  K  I  L  R  S  R  L  N  Y  Q  A  I  N  V  D  T  L  R  A  Q  N  M  E  G  W  P  F  F  N  Q  :  V  T  A  D  L  T  P  L  N  A  Q  K  V  A  V  K  F  D  Y  F  K  I  A  G  L  :  I  P  I  K  A  P  G  R  A  K  G  E  L  E  I  T  Y  L  D  E  E  L  R :   V  S  R  G  D  L  G  N  L  F  I  L  K  M  V  D  P  S  Y  K  V  P  T  *  D  C  Y  Y  Q  L  Y  R  V  T  N  *  C  H  I  L  Y  Y  N  I  I  C  Q  V  C  A  K  D  S  Q  A  F  S  L  F  N  L  T  T  V  Q  N  C  I  K  K  L  K  *  F  Q  T  C  V  Y  A  A  L  S  K  F  L  V  I  </first_frame>
            <second_frame>  G  V  K  *  K  V  E  S  H  S  F  A  A  F  P  W  P  Y  P  H  Y  P  L  H  *  H  I  F  L  Q  R  N  F  I  S  L  S  L  V  S  *  I  L  I  L  I  P  I  I  I  P  T  F  L  L  S  I  K  N  G  R  P  T  F  L  S  S  L  L  S  S  T  R  R  P  K  T  L  H  P  L  N  K  S  F  F  K  P  L  N  L  L  I  V  A  L  T  P  L  L  K  T  S  R  *  L  I  R :   L  L  A  D  L  K  L  A  I  Q  Q  R  S  P  S  T  Q  L  C  L  M  E  N  G  N  L  Y  T  L  H  Q  S  L  F  Y  R  F  R :   D  P  R  F  C  D  L  D  *  I  I  K  Q  *  M  *  I  H  F  G  L  R  I  W  K  D  G  P  S  S  T  R :   L  L  Q  I  *  P  R  *  M  H  K  R  W  Q  *  S  L  I  I  S  K  L  L  D  * :   Y  L  L  K  L  L  E  E  L  K  A  S  L  K  L  L  T  W  M  K  N  *   : G  Y  Q  E  V  I  L  A  T  C  S  F  *  K  W  L  T  L  L  T  R  S  L  L  E  I  A  T  I  N  F  I  E  L  L  I  S  V  T  S  Y  I  I  I  L  Y  A  K  S  V  Q  R  I  H  K  H  F  L  S  S  I  *  L  L  Y  K  I  A  L  K  N  L  S  N  F  K  L  V  Y  M  Q  L  Y  Q  N  F  L  S  * </second_frame>
            <third_frame>   V  *  S  R  K  *  K  V  I  H  L  Q  H  S  H  G  L  I  L  T  I  P  S  I  N  T  Y  F  F  N  E  T  S  S  L  F  P  L  Y  R  K  S  S  S  S  F  P  *  L  Y  Q  P  F  S  S  Q  *  K  M  A  D  Q  R  F  F  L  P  F  F  L  Q  Q  E  D  Q  R  P  Y  T  H  *  T  R  A  S  S  S  H  *  T  S  *  S  W  R  *  R  H  S  S  R  P  A  D  N  *  S   : D  C  L  Q  T  *  S  L  Q  S  N  K  G  A  P  Q  L  N  S  A  *  W  K  M  G  T  Y  I  H  Y  I  K  V  Y  F  T  D  S   : E  T  Q  D  F  A  I  *  I  E  L  S  S  N  K  C  R  Y  T  S  G  S  E  Y  G  R  M  A  L  L  Q  P   : G  Y  C  R  F  D  P  A  E  C  T  K  G  G  S  K  V  *  L  F  Q  N  C  W  T   : N  T  Y  *  S  S  W  K  S  *  R  R  A  *  N  Y  L  L  G  *  R  I  E  :  G  I  K  R  *  S  W  Q  L  V  H  F  E  N  G  *  P  F  L  Q  G  P  Y  L  R  L  L  L  S  T  L  *  S  Y  *  L  V  S  H  L  I  L  *  Y  Y  M  P  S  L  C  K  G  F  T  S  I  F  S  L  Q  F  N  Y  C  T  K  L  H  *  K  T  *  V  I  S  N  L  C  I  C  S  F  I  K  I  S  C  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0074N01.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14829" stop="15152"/>
                    <exon start="15250" stop="15363"/>
                    <exon start="20307" stop="20402"/>
                    <exon start="21697" stop="21771"/>
                    <exon start="22013" stop="22080"/>
                    <exon start="23137" stop="23209"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>747</number_coding_nucleotides>
                  <number_encoded_amino_acids>249</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>WCEVESRKSFICSIPMALSSLSPPLTHISSTKLHLSFPCIVNPHPHSHNYTNLSPLNKKWQTNVSFFPSFFNKKTKDPTPIKQELLQAIEPLDRGADATPQDQQIIDQIACRLEACNPTKEPLNSTLLNGKWELIYTTSKSILQIQRPKILRSRLNYQAINVDTLRAQNMEGWPFFNQVTADLTPLNAQKVAVKFDYFKIAGLIPIKAPGRAKGELEITYLDEELRVSRGDLGNLFILKMVDPSYKVPT*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="14913" e_stop="15766"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="14913" e_stop="15766" e_length="854"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14913" stop="15766"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593936" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTTCAACGAAACTTCATCTCTCTTTCCCTTGTATCGTAAATCCTCATCCTCATTCCCATAATTATACCAACCTTTCTCCTCTCAATAAAAAATGGCAGACCAACGTTTCTTTCTTCCCTTCTTTCTTCAACAAGAAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCCATTGAACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAGGTTTTGCTTCACCTCATTGCAATTATCCAGTTTAGGTTTAGTTTTCTGACTGATTGTGTGTTTCTTTTAGTTTCTCAACACAATGTTATTTGATTAGATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAACTCTGCTTAATGGAAAATGGGAACTTATATACACTACATCAAAGTCTATTTTACAGATTCAGGTGAAAACTATAACCATCATTCAAGTGTTTTACTGAATGTCATGAAAATTATGCTTCTAGGTCCTTTAATGGAACTGTATACATTGTTAAAATTCGTACCAAGCTGGGTAAAATGTTGAGTTTGTGAATGTCACCATTCAACTGTATATACACATTTTATGAGTTTGTGAGAATCTATACGATGCTTTGAAAGGAAATGGAAATCTGTACAGGAGACGGGGAAGGACATTCAATACATATATCTATAGAGTCTATCAAAATTATAACAACTTTGGCTGCTTTGTATGGATTGAAACATGTCTAGGTCACTAGAAAAATGCAATCATTCTCCCAGAAGTTGTACAAACAAAGGATGGGGAGACATTCCCACCAAAATTCCTCGAGACATTGCCACCAAAATTCC</gDNA_template>
            <first_frame> S  S  T  K  L  H  L  S  F  P  C  I  V  N  P  H  P  H  S  H  N  Y  T  N  L  S  P  L  N  K  K  W  Q  T  N  V  S  F  F  P  S  F  F  N  K  K  T  K  D  P  T  P  I  K  Q  E  L  L  Q  A  I  E  P  L  D  R  G  A  D  A  T  P  Q  D  Q  Q  I  I  D  Q  V  L  L  H  L  I  A  I  I  Q  F  R  F  S  F  L  T  D  C  V  F  L  L  V  S  Q  H  N  V  I  *  L  D  C  L  Q  T  *  S  L  Q  S  N  K  G  A  P  Q  L  N  S  A  *  W  K  M  G  T  Y  I  H  Y  I  K  V  Y  F  T  D  S  G  E  N  Y  N  H  H  S  S  V  L  L  N  V  M  K  I  M  L  L  G  P  L  M  E  L  Y  T  L  L  K  F  V  P  S  W  V  K  C  *  V  C  E  C  H  H  S  T  V  Y  T  H  F  M  S  L  *  E  S  I  R  C  F  E  R  K  W  K  S  V  Q  E  T  G  K  D  I  Q  Y  I  Y  L  *  S  L  S  K  L  *  Q  L  W  L  L  C  M  D  *  N  M  S  R  S  L  E  K  C  N  H  S  P  R  S  C  T  N  K  G  W  G  D  I  P  T  K  I  P  R  D  I  A  T  K  I   </first_frame>
            <second_frame>  L  Q  R  N  F  I  S  L  S  L  V  S  *  I  L  I  L  I  P  I  I  I  P  T  F  L  L  S  I  K  N  G  R  P  T  F  L  S  S  L  L  S  S  T  R  R  P  K  T  L  H  P  L  N  K  S  F  F  K  P  L  N  L  L  I  V  A  L  T  P  L  L  K  T  S  R  *  L  I  R  F  C  F  T  S  L  Q  L  S  S  L  G  L  V  F  *  L  I  V  C  F  F  *  F  L  N  T  M  L  F  D  *  I  A  C  R  L  E  A  C  N  P  T  K  E  P  L  N  S  T  L  L  N  G  K  W  E  L  I  Y  T  T  S  K  S  I  L  Q  I  Q  V  K  T  I  T  I  I  Q  V  F  Y  *  M  S  *  K  L  C  F  *  V  L  *  W  N  C  I  H  C  *  N  S  Y  Q  A  G  *  N  V  E  F  V  N  V  T  I  Q  L  Y  I  H  I  L  *  V  C  E  N  L  Y  D  A  L  K  G  N  G  N  L  Y  R  R  R  G  R  T  F  N  T  Y  I  Y  R  V  Y  Q  N  Y  N  N  F  G  C  F  V  W  I  E  T  C  L  G  H  *  K  N  A  I  I  L  P  E  V  V  Q  T  K  D  G  E  T  F  P  P  K  F  L  E  T  L  P  P  K  F  </second_frame>
            <third_frame>   F  N  E  T  S  S  L  F  P  L  Y  R  K  S  S  S  S  F  P  *  L  Y  Q  P  F  S  S  Q  *  K  M  A  D  Q  R  F  F  L  P  F  F  L  Q  Q  E  D  Q  R  P  Y  T  H  *  T  R  A  S  S  S  H  *  T  S  *  S  W  R  *  R  H  S  S  R  P  A  D  N  *  S  G  F  A  S  P  H  C  N  Y  P  V  *  V  *  F  S  D  *  L  C  V  S  F  S  F  S  T  Q  C  Y  L  I  R  L  L  A  D  L  K  L  A  I  Q  Q  R  S  P  S  T  Q  L  C  L  M  E  N  G  N  L  Y  T  L  H  Q  S  L  F  Y  R  F  R  *  K  L  *  P  S  F  K  C  F  T  E  C  H  E  N  Y  A  S  R  S  F  N  G  T  V  Y  I  V  K  I  R  T  K  L  G  K  M  L  S  L  *  M  S  P  F  N  C  I  Y  T  F  Y  E  F  V  R  I  Y  T  M  L  *  K  E  M  E  I  C  T  G  D  G  E  G  H  S  I  H  I  S  I  E  S  I  K  I  I  T  T  L  A  A  L  Y  G  L  K  H  V  *  V  T  R  K  M  Q  S  F  S  Q  K  L  Y  K  Q  R  M  G  R  H  S  H  Q  N  S  S  R  H  C  H  Q  N  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0074N01.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14913" stop="15245"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>330</number_coding_nucleotides>
                  <number_encoded_amino_acids>110</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SSTKLHLSFPCIVNPHPHSHNYTNLSPLNKKWQTNVSFFPSFFNKKTKDPTPIKQELLQAIEPLDRGADATPQDQQIIDQVLLHLIAIIQFRFSFLTDCVFLLVSQHNVI*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="14852" e_stop="15152"/>
            <exon e_start="15250" e_stop="15665"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.992" acc_prob="0.995" e_score="0.990"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.990">
            <gDNA_exon_boundary e_start="14852" e_stop="15152" e_length="301"/>
          </exon>
          <intron i_serial="1" don_prob="0.992" acc_prob="0.995">
            <gDNA_intron_boundary i_start="15153" i_stop="15249" i_length="97"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="15250" e_stop="15665" e_length="416"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="14852" stop="15152"/>
              <exon start="15250" stop="15665"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U593937" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTCATTCATTTGCAGCATTCCCATGGCCTTATCCTCACTATCCCCTCCATTAACACATATTTCTTCAACGAAACTTCATCTCTCTTTCCCTTGTATCGTAAATCCTCATCCTCATTCCCATAATTATACCAACCTTTCTCCTCTCAATAAAAAATGGCAGACCAACGTTTCTTTCTTCCCTTCTTTCTTCAACAAGAAGACCAAAGACCCTACACCCATTAAACAAGAGCTTCTTCAAGCCATTGAACCTCTTGATCGTGGCGCTGACGCCACTCCTCAAGACCAGCAGATAATTGATCAG : ATTGCTTGCAGACTTGAAGCTTGCAATCCAACAAAGGAGCCCCTCAACTCAACTCTGCTTAATGGAAAATGGGAACTTATATACACTACATCAAAGTCTATTTTACAGATTCAGGTGAAAACTATAACCATCATTCAAGTGTTTTACTGAATGTCATGAAAATTATGCTTCTAGGTCCTTTAATGGAACTGTATACATTGTTAAAATTCGTACCAAGCTGGGTAAAATGTTGAGTTTGTGAATGTCACCATTCAACTGTATATACACATTTTATGAGTTTGTGAGAATCTATACGATGCTTTGAAAGGAAATGGAAATCTGTACAGGAGACGGGGAAGGACATTCAATACATATATCTATAGAGTCTATCAAAATTATAACAACTTTGGCTGCTTTGTATGGATTGAAACATGTCT</gDNA_template>
            <first_frame> V  I  H  L  Q  H  S  H  G  L  I  L  T  I  P  S  I  N  T  Y  F  F  N  E  T  S  S  L  F  P  L  Y  R  K  S  S  S  S  F  P  *  L  Y  Q  P  F  S  S  Q  *  K  M  A  D  Q  R  F  F  L  P  F  F  L  Q  Q  E  D  Q  R  P  Y  T  H  *  T  R  A  S  S  S  H  *  T  S  *  S  W  R  *  R  H  S  S  R  P  A  D  N  *  S   : D  C  L  Q  T  *  S  L  Q  S  N  K  G  A  P  Q  L  N  S  A  *  W  K  M  G  T  Y  I  H  Y  I  K  V  Y  F  T  D  S  G  E  N  Y  N  H  H  S  S  V  L  L  N  V  M  K  I  M  L  L  G  P  L  M  E  L  Y  T  L  L  K  F  V  P  S  W  V  K  C  *  V  C  E  C  H  H  S  T  V  Y  T  H  F  M  S  L  *  E  S  I  R  C  F  E  R  K  W  K  S  V  Q  E  T  G  K  D  I  Q  Y  I  Y  L  *  S  L  S  K  L  *  Q  L  W  L  L  C  M  D  *  N  M  S </first_frame>
            <second_frame>  S  F  I  C  S  I  P  M  A  L  S  S  L  S  P  P  L  T  H  I  S  S  T  K  L  H  L  S  F  P  C  I  V  N  P  H  P  H  S  H  N  Y  T  N  L  S  P  L  N  K  K  W  Q  T  N  V  S  F  F  P  S  F  F  N  K  K  T  K  D  P  T  P  I  K  Q  E  L  L  Q  A  I  E  P  L  D  R  G  A  D  A  T  P  Q  D  Q  Q  I  I  D  Q  :  I  A  C  R  L  E  A  C  N  P  T  K  E  P  L  N  S  T  L  L  N  G  K  W  E  L  I  Y  T  T  S  K  S  I  L  Q  I  Q  V  K  T  I  T  I  I  Q  V  F  Y  *  M  S  *  K  L  C  F  *  V  L  *  W  N  C  I  H  C  *  N  S  Y  Q  A  G  *  N  V  E  F  V  N  V  T  I  Q  L  Y  I  H  I  L  *  V  C  E  N  L  Y  D  A  L  K  G  N  G  N  L  Y  R  R  R  G  R  T  F  N  T  Y  I  Y  R  V  Y  Q  N  Y  N  N  F  G  C  F  V  W  I  E  T  C   </second_frame>
            <third_frame>   H  S  F  A  A  F  P  W  P  Y  P  H  Y  P  L  H  *  H  I  F  L  Q  R  N  F  I  S  L  S  L  V  S  *  I  L  I  L  I  P  I  I  I  P  T  F  L  L  S  I  K  N  G  R  P  T  F  L  S  S  L  L  S  S  T  R  R  P  K  T  L  H  P  L  N  K  S  F  F  K  P  L  N  L  L  I  V  A  L  T  P  L  L  K  T  S  R  *  L  I  R :   L  L  A  D  L  K  L  A  I  Q  Q  R  S  P  S  T  Q  L  C  L  M  E  N  G  N  L  Y  T  L  H  Q  S  L  F  Y  R  F  R  *  K  L  *  P  S  F  K  C  F  T  E  C  H  E  N  Y  A  S  R  S  F  N  G  T  V  Y  I  V  K  I  R  T  K  L  G  K  M  L  S  L  *  M  S  P  F  N  C  I  Y  T  F  Y  E  F  V  R  I  Y  T  M  L  *  K  E  M  E  I  C  T  G  D  G  E  G  H  S  I  H  I  S  I  E  S  I  K  I  I  T  T  L  A  A  L  Y  G  L  K  H  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0074N01.2" strand="+"/>
                <serials PGL_serial="1" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="14853" stop="15152"/>
                    <exon start="15250" stop="15399"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>447</number_coding_nucleotides>
                  <number_encoded_amino_acids>149</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SFICSIPMALSSLSPPLTHISSTKLHLSFPCIVNPHPHSHNYTNLSPLNKKWQTNVSFFPSFFNKKTKDPTPIKQELLQAIEPLDRGADATPQDQQIIDQIACRLEACNPTKEPLNSTLLNGKWELIYTTSKSILQIQVKTITIIQVFY*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="45653" PGL_stop="45121"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="45653" e_stop="45558"/>
            <exon e_start="45477" e_stop="45121"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.883" acc_prob="0.997" e_score="0.948"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.948">
            <gDNA_exon_boundary e_start="45653" e_stop="45558" e_length="96"/>
          </exon>
          <intron i_serial="1" don_prob="0.883" acc_prob="0.997">
            <gDNA_intron_boundary i_start="45557" i_stop="45478" i_length="80"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="45477" e_stop="45121" e_length="357"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="45653" stop="45558"/>
              <exon start="45477" stop="45121"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U585643" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GCCGGTACTGGTGGATCCATGCTAGTAATTGGTTCAGCAGCTGGAGTAGCATTTATGGGAATGGAAAAAGTCGACTTCTTTTGGTATATGAGAAAG : GTTAGTGGTTTTGCTTTTGCTGGTTATGCTGCCGGTATTGCTTCGTATCTTGCAGTACATAATCTCGATATCTCACTCCCAACAGCTCTGGCTCAAATTCCTTTCCTTCATGGATCTTGATGTCCTTGGAGCTATCAGTAAATCTGATCGGTTGTGTATTCTCTGCTTCAAGTTAATGACCAGAACATATGAACACAAATCCAGAACCTTTAGTGGTGGAGATGAAAATGCCATATATCAATCTCTTTAGAACTACCAGTGTGTTGGCCTGGGTTGGGGATTAAAGCCCCACATAATGTAATTTATTGATTCTAATAGTTTAATAATGTAACTGTGGAGTAATACCTCCATCTTCAG</gDNA_template>
            <first_frame> A  G  T  G  G  S  M  L  V  I  G  S  A  A  G  V  A  F  M  G  M  E  K  V  D  F  F  W  Y  M  R  K  :  V  S  G  F  A  F  A  G  Y  A  A  G  I  A  S  Y  L  A  V  H  N  L  D  I  S  L  P  T  A  L  A  Q  I  P  F  L  H  G  S  *  C  P  W  S  Y  Q  *  I  *  S  V  V  Y  S  L  L  Q  V  N  D  Q  N  I  *  T  Q  I  Q  N  L  *  W  W  R  *  K  C  H  I  S  I  S  L  E  L  P  V  C  W  P  G  L  G  I  K  A  P  H  N  V  I  Y  *  F  *  *  F  N  N  V  T  V  E  *  Y  L  H  L  Q </first_frame>
            <second_frame>  P  V  L  V  D  P  C  *  *  L  V  Q  Q  L  E  *  H  L  W  E  W  K  K  S  T  S  F  G  I  *  E  R :   L  V  V  L  L  L  L  V  M  L  P  V  L  L  R  I  L  Q  Y  I  I  S  I  S  H  S  Q  Q  L  W  L  K  F  L  S  F  M  D  L  D  V  L  G  A  I  S  K  S  D  R  L  C  I  L  C  F  K  L  M  T  R  T  Y  E  H  K  S  R  T  F  S  G  G  D  E  N  A  I  Y  Q  S  L  *  N  Y  Q  C  V  G  L  G  W  G  L  K  P  H  I  M  *  F  I  D  S  N  S  L  I  M  *  L  W  S  N  T  S  I  F   </second_frame>
            <third_frame>   R  Y  W  W  I  H  A  S  N  W  F  S  S  W  S  S  I  Y  G  N  G  K  S  R  L  L  L  V  Y  E  K   : G  *  W  F  C  F  C  W  L  C  C  R  Y  C  F  V  S  C  S  T  *  S  R  Y  L  T  P  N  S  S  G  S  N  S  F  P  S  W  I  L  M  S  L  E  L  S  V  N  L  I  G  C  V  F  S  A  S  S  *  *  P  E  H  M  N  T  N  P  E  P  L  V  V  E  M  K  M  P  Y  I  N  L  F  R  T  T  S  V  L  A  W  V  G  D  *  S  P  T  *  C  N  L  L  I  L  I  V  *  *  C  N  C  G  V  I  P  P  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0074N01.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45562" stop="45558"/>
                    <exon start="45477" stop="45228"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>252</number_coding_nucleotides>
                  <number_encoded_amino_acids>84</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ERLVVLLLLVMLPVLLRILQYIISISHSQQLWLKFLSFMDLDVLGAISKSDRLCILCFKLMTRTYEHKSRTFSGGDENAIYQSL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0074N01.2" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="45653" stop="45558"/>
                    <exon start="45477" stop="45358"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>213</number_coding_nucleotides>
                  <number_encoded_amino_acids>71</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AGTGGSMLVIGSAAGVAFMGMEKVDFFWYMRKVSGFAFAGYAAGIASYLAVHNLDISLPTALAQIPFLHGS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="51203" PGL_stop="45794"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="51203" e_stop="51075"/>
            <exon e_start="50065" e_stop="49959"/>
            <exon e_start="48886" e_stop="48766"/>
            <exon e_start="46713" e_stop="46652"/>
            <exon e_start="46552" e_stop="45794"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.964" e_score="0.984"/>
          <exon-intron don_prob="0.781" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.998" acc_prob="0.934" e_score="1.000"/>
          <exon-intron don_prob="0.945" acc_prob="0.978" e_score="1.000"/>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.984">
            <gDNA_exon_boundary e_start="51203" e_stop="51075" e_length="129"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.964">
            <gDNA_intron_boundary i_start="51074" i_stop="50066" i_length="1009"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="50065" e_stop="49959" e_length="107"/>
          </exon>
          <intron i_serial="2" don_prob="0.781" acc_prob="0.999">
            <gDNA_intron_boundary i_start="49958" i_stop="48887" i_length="1072"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="48886" e_stop="48766" e_length="121"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.934">
            <gDNA_intron_boundary i_start="48765" i_stop="46714" i_length="2052"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="46713" e_stop="46652" e_length="62"/>
          </exon>
          <intron i_serial="4" don_prob="0.945" acc_prob="0.978">
            <gDNA_intron_boundary i_start="46651" i_stop="46553" i_length="99"/>
          </intron>
          <exon e_serial="5" e_score="0.996">
            <gDNA_exon_boundary e_start="46552" e_stop="45794" e_length="759"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="51203" stop="51075"/>
              <exon start="50065" stop="49959"/>
              <exon start="48886" stop="48766"/>
              <exon start="46713" stop="46652"/>
              <exon start="46552" stop="45794"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U565758" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GAAGTTAGTGAAATAGTGTTCTTTTTGCTTGGTGCGATGACCATTGTTGAGATAGTTGATGCTCATCAGGGATTTAAGCTGGTTACAGACAACATCACTACTCGCAAGCCAATAACTCTGCTTTGGGTG : GTAGGTTTTGTGACTTTCTTCCTCAGTTCAATCCTTGACAATCTGACTTCTACAATTGTGATGGTCTCCTTACTGAGGAAACTGGCACCACCTTCAGAATACCGAAA : GCTTCTTGGCGCTGTTGTTGTTATAGCAGCAAATGCCGGTGGAGCATGGACTCCCATAGGTGATGTTACAACTACAATGCTCTGGATACACGGCCAAGTATCCACGTTACCAACGATGAAG : GATTTATTTCTACCGTCAGTTGTTTCTCTAGCTGTTCCTTTGGCTCTGCTGTCCCTTACAAG : TGAAGTGAATGGGAAAGGACAAAACTCCGCTGAGGTTCTGGCATCCGAACAGATGGCTCCTCGAGGACAGCTAGTTTTCGCGGTTGGACTTGGGGCTTTAGTGTTTGTACCAGTTTTCAAGGCCTTGACTGGCCTTCCACCGTACATGGGTATGCTGCTTGGACTGGGAGTTCTTTGGATAATCACAGATGCGATCCACTATGGAGAATCTGAAAGACAGCGGCTGAAAGTACCACAGGCTTTATCACGCATTGACACTCAAGGAGCTCTTTTCTTCCTTGGAATCCTATTGTCCGTTAGCAGGTATTGCAGAATCCTTTGGGTTTTATAATACTTACAGCAGCATGGCAATCAAAAAGTTCATGCAGAACTCTTTTCTTGATAGAATAGATTCATACATCATAACCCTAAAATCATTTTAAACCAGATGTTGAGAATTAACCCTGTTCAAAAATTTGCCATCCAGATCATTTGGCATTATATCATTTCTTAGTCTTGATTAACAGTGTAACCACTATAAGTGAAATCATTGGGGGAAATGGGAAGTGGTTCTTATTTTACTTCTGCGGGTATGATGGGTGTAGGATCCATTACTCTATTTAGCTCATGCATTGTGTGACTATCAACCATCATCCATGCACATCTGAATTAGATAAATAACATGACTAGTCATTCTGGCATATTAACATCTTTTCCATAGCCTGGAAGCAGCAGGTATTCTGCGAGAATTGGCAAATTACCTTGATGCCCATATACCAA</gDNA_template>
            <first_frame> E  V  S  E  I  V  F  F  L  L  G  A  M  T  I  V  E  I  V  D  A  H  Q  G  F  K  L  V  T  D  N  I  T  T  R  K  P  I  T  L  L  W  V  :  V  G  F  V  T  F  F  L  S  S  I  L  D  N  L  T  S  T  I  V  M  V  S  L  L  R  K  L  A  P  P  S  E  Y  R  K :   L  L  G  A  V  V  V  I  A  A  N  A  G  G  A  W  T  P  I  G  D  V  T  T  T  M  L  W  I  H  G  Q  V  S  T  L  P  T  M  K  :  D  L  F  L  P  S  V  V  S  L  A  V  P  L  A  L  L  S  L  T  S :   E  V  N  G  K  G  Q  N  S  A  E  V  L  A  S  E  Q  M  A  P  R  G  Q  L  V  F  A  V  G  L  G  A  L  V  F  V  P  V  F  K  A  L  T  G  L  P  P  Y  M  G  M  L  L  G  L  G  V  L  W  I  I  T  D  A  I  H  Y  G  E  S  E  R  Q  R  L  K  V  P  Q  A  L  S  R  I  D  T  Q  G  A  L  F  F  L  G  I  L  L  S  V  S  R  Y  C  R  I  L  W  V  L  *  Y  L  Q  Q  H  G  N  Q  K  V  H  A  E  L  F  S  *  *  N  R  F  I  H  H  N  P  K  I  I  L  N  Q  M  L  R  I  N  P  V  Q  K  F  A  I  Q  I  I  W  H  Y  I  I  S  *  S  *  L  T  V  *  P  L  *  V  K  S  L  G  E  M  G  S  G  S  Y  F  T  S  A  G  M  M  G  V  G  S  I  T  L  F  S  S  C  I  V  *  L  S  T  I  I  H  A  H  L  N  *  I  N  N  M  T  S  H  S  G  I  L  T  S  F  P  *  P  G  S  S  R  Y  S  A  R  I  G  K  L  P  *  C  P  Y  T   </first_frame>
            <second_frame>  K  L  V  K  *  C  S  F  C  L  V  R  *  P  L  L  R  *  L  M  L  I  R  D  L  S  W  L  Q  T  T  S  L  L  A  S  Q  *  L  C  F  G  W :   *  V  L  *  L  S  S  S  V  Q  S  L  T  I  *  L  L  Q  L  *  W  S  P  Y  *  G  N  W  H  H  L  Q  N  T  E   : S  F  L  A  L  L  L  L  *  Q  Q  M  P  V  E  H  G  L  P  *  V  M  L  Q  L  Q  C  S  G  Y  T  A  K  Y  P  R  Y  Q  R  *  R :   I  Y  F  Y  R  Q  L  F  L  *  L  F  L  W  L  C  C  P  L  Q   : V  K  *  M  G  K  D  K  T  P  L  R  F  W  H  P  N  R  W  L  L  E  D  S  *  F  S  R  L  D  L  G  L  *  C  L  Y  Q  F  S  R  P  *  L  A  F  H  R  T  W  V  C  C  L  D  W  E  F  F  G  *  S  Q  M  R  S  T  M  E  N  L  K  D  S  G  *  K  Y  H  R  L  Y  H  A  L  T  L  K  E  L  F  S  S  L  E  S  Y  C  P  L  A  G  I  A  E  S  F  G  F  Y  N  T  Y  S  S  M  A  I  K  K  F  M  Q  N  S  F  L  D  R  I  D  S  Y  I  I  T  L  K  S  F  *  T  R  C  *  E  L  T  L  F  K  N  L  P  S  R  S  F  G  I  I  S  F  L  S  L  D  *  Q  C  N  H  Y  K  *  N  H  W  G  K  W  E  V  V  L  I  L  L  L  R  V  *  W  V  *  D  P  L  L  Y  L  A  H  A  L  C  D  Y  Q  P  S  S  M  H  I  *  I  R  *  I  T  *  L  V  I  L  A  Y  *  H  L  F  H  S  L  E  A  A  G  I  L  R  E  L  A  N  Y  L  D  A  H  I  P  </second_frame>
            <third_frame>   S  *  *  N  S  V  L  F  A  W  C  D  D  H  C  *  D  S  *  C  S  S  G  I  *  A  G  Y  R  Q  H  H  Y  S  Q  A  N  N  S  A  L  G   : G  R  F  C  D  F  L  P  Q  F  N  P  *  Q  S  D  F  Y  N  C  D  G  L  L  T  E  E  T  G  T  T  F  R  I  P  K  :  A  S  W  R  C  C  C  Y  S  S  K  C  R  W  S  M  D  S  H  R  *  C  Y  N  Y  N  A  L  D  T  R  P  S  I  H  V  T  N  D  E   : G  F  I  S  T  V  S  C  F  S  S  C  S  F  G  S  A  V  P  Y  K  :  *  S  E  W  E  R  T  K  L  R  *  G  S  G  I  R  T  D  G  S  S  R  T  A  S  F  R  G  W  T  W  G  F  S  V  C  T  S  F  Q  G  L  D  W  P  S  T  V  H  G  Y  A  A  W  T  G  S  S  L  D  N  H  R  C  D  P  L  W  R  I  *  K  T  A  A  E  S  T  T  G  F  I  T  H  *  H  S  R  S  S  F  L  P  W  N  P  I  V  R  *  Q  V  L  Q  N  P  L  G  F  I  I  L  T  A  A  W  Q  S  K  S  S  C  R  T  L  F  L  I  E  *  I  H  T  S  *  P  *  N  H  F  K  P  D  V  E  N  *  P  C  S  K  I  C  H  P  D  H  L  A  L  Y  H  F  L  V  L  I  N  S  V  T  T  I  S  E  I  I  G  G  N  G  K  W  F  L  F  Y  F  C  G  Y  D  G  C  R  I  H  Y  S  I  *  L  M  H  C  V  T  I  N  H  H  P  C  T  S  E  L  D  K  *  H  D  *  S  F  W  H  I  N  I  F  S  I  A  W  K  Q  Q  V  F  C  E  N  W  Q  I  T  L  M  P  I  Y  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0074N01.2" strand="-"/>
                <serials PGL_serial="3" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="51203" stop="51075"/>
                    <exon start="50065" stop="49959"/>
                    <exon start="48886" stop="48766"/>
                    <exon start="46713" stop="46652"/>
                    <exon start="46552" stop="46222"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>747</number_coding_nucleotides>
                  <number_encoded_amino_acids>249</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPITLLWVVGFVTFFLSSILDNLTSTIVMVSLLRKLAPPSEYRKLLGAVVVIAANAGGAWTPIGDVTTTMLWIHGQVSTLPTMKDLFLPSVVSLAVPLALLSLTSEVNGKGQNSAEVLASEQMAPRGQLVFAVGLGALVFVPVFKALTGLPPYMGMLLGLGVLWIITDAIHYGESERQRLKVPQALSRIDTQGALFFLGILLSVSRYCRILWVL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="67942" PGL_stop="68240"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="67942" e_stop="68240"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.983"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="67942" e_stop="68240" e_length="299"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="67942" stop="68240"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U603118" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTAGAGTTTTGTGAACATTGTGTTTTTGGAAAACTACATCGCAACAAGTTTCCAAAGGCCATTCATAGAACAAAAGGCACACTTGATTATATCCATTCTGATTGCTAGGGTCCATGCCGTGTTGACTCTTTGGGAGGCTGCAGATTTTTTGTGTCCATTATTGATGACTACTCAAGGATGACTTGGGTGTACATGATGAAGCATAAAAGTGAAGCCTTTCAGAAGTTCAAGGAGTGGAAAATTTTGATGGAAAATCAAACAGGGAAGAAGATCAAGAGGTTGCAAACTGATAATGGGC</gDNA_template>
            <first_frame> P  R  V  L  *  T  L  C  F  W  K  T  T  S  Q  Q  V  S  K  G  H  S  *  N  K  R  H  T  *  L  Y  P  F  *  L  L  G  S  M  P  C  *  L  F  G  R  L  Q  I  F  C  V  H  Y  *  *  L  L  K  D  D  L  G  V  H  D  E  A  *  K  *  S  L  S  E  V  Q  G  V  E  N  F  D  G  K  S  N  R  E  E  D  Q  E  V  A  N  *  *  W   </first_frame>
            <second_frame>  L  E  F  C  E  H  C  V  F  G  K  L  H  R  N  K  F  P  K  A  I  H  R  T  K  G  T  L  D  Y  I  H  S  D  C  *  G  P  C  R  V  D  S  L  G  G  C  R  F  F  V  S  I  I  D  D  Y  S  R  M  T  W  V  Y  M  M  K  H  K  S  E  A  F  Q  K  F  K  E  W  K  I  L  M  E  N  Q  T  G  K  K  I  K  R  L  Q  T  D  N  G  </second_frame>
            <third_frame>   *  S  F  V  N  I  V  F  L  E  N  Y  I  A  T  S  F  Q  R  P  F  I  E  Q  K  A  H  L  I  I  S  I  L  I  A  R  V  H  A  V  L  T  L  W  E  A  A  D  F  L  C  P  L  L  M  T  T  Q  G  *  L  G  C  T  *  *  S  I  K  V  K  P  F  R  S  S  R  S  G  K  F  *  W  K  I  K  Q  G  R  R  S  R  G  C  K  L  I  M  G </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0074N01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="68283" PGL_stop="70184"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="68283" e_stop="70184"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.979"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.979">
            <gDNA_exon_boundary e_start="68283" e_stop="70184" e_length="1902"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="68283" stop="69388"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575023" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69385" stop="70184"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U604002" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAGGGATTGCTCGACATCTTACAGTTAGAAATACACCACAGCAGAACGGTGTAGCTGAGCGGATGAATCAAACACTTCTGGAAAGAGCAAGGTGCATGCTCTCTAATGCTGGGCTAGATAGAAGATTCTGGGCAGAAGCGGTTAGTACAGCTTGCTACTTGATTAACCGCGGACCACATACAGGCATACAGTGCAAGACACCTATGGAGATGTGGTCAGGAAAAGCTGCTGATTATTCAAATCTGAAAGCTTTTGGTTGTACGGCTTACTATCACGTCAGTGAAGGTAAGTTAGAACCAAGAGCTAAAAAGGGAGTATTTGTGGGCTACGGAGATGGAGTGAAAGGTTTCAGAATCTGGTCTCCAGCAGAAAAGAGGGTTATTATGAGCAGGAACGTTGTCTTTGATGAAAGTTCTCTGCTTAGAACCATTGTGAAGCCTACAACTACGTCAGAAACTGGGAGTCTTGACAAACAGGTGGAGTTTCAAGTCATTCAGAACGAGAGCGATTTAAAGGAACCTGAAGAGGAGGATCAAGATCCACAGACAGAAACTGATATTCCAGAATCTATGACATCAGATATCCATCAGAGTATAGCTCAAGATCGGCCAAGGAGGGTTGGAGTTCGGCCACCTACGAGGTATGGTTTTGAGGACATGGTGGGTTATGCACTGCAGGTTGCTGAAGAGGTAGATACATCTGAGCCGTCTACTTACAAAGAAGCCATTTTAAGTTCTGATTTTGAAAAATGGTTTGCCGCTATGGGAGATGAGATGGAGTCCCTACACAAGAATCAGACATGGGATCTGGTCATACAGCCTTCGGGGAGAAAGATTATTACTTGCAAATGGGTTTTCAAGAAGAAGGAAGGGATATCACCAGCAGAAGGAGTCAAGTATAAAGCCAGGGTTGTTGCCAGAGGTTTCAACCAAAGAGAGGGAGTGGACTACAATGAGATCTTCTCACCAGTGGTCAGACATACTTCCATCTGAGTGTTACTAGCGATAGTTGCACATCAGAATCTGGAGCTTGAACAACTTGATGTGAAGACAACGTTTCTACATGGAGAGTTGGAGGAAGAGATATACATGACTCAGCCGGATGGTTTCCAAGTCCCAGGGAAGGAAAATCACGTCTGCAAGTTGAAGAAGTCCTTATATGGACTTAAGCAGTCTCCAAGGCAGTGATATAAAAGGTTTGACAGCTATATGGTGAAGTTGGGCTATACTCGGAGCTCATATGATTGTTGTGTCTACTACAATAGGCTCAATGATGATTCATTCATCTATCTGGTGCTTTATGTAGATGATATGTTGATAGCTGCAAAGAAGAAGTATGACATTCAGAAGCTGAAGGGTTTACTTAGTGCTGAGTTTGAGATGAAGGATCTGGGAGCCGCTCAGAAGATTTTAGGGATGGAGATCATTAGAGACAGAGAGAGAAGGAAACTTTTCTTGTCACAGAGAAGCTACATTCAGAAGGTCTTGGCGAGGTTTGGCATGTCTTCATCTAAGCCCATTGATACCCCCAGTGCTGCCAATATCCATCTCACTGCCATGTTCGCTCCACAGTCAGAAGAAGAGAAGGAGTATATGTCACGAGTCCCTTATGCCAGTGCCGTAGGAAGTTTGATGTATGCTATGGTCTGTACAAGGCCAGATTTAGCACATGCAGTCAGTGTAGTGAGCAGATTCATGGGACAACCAGGGAGAGAACATTGGCAGGCTGTGAAGAGAATTTTCCGGTATCTTAGAGGTACATCTGACGTTGGTCAGGTGATACTCAGTGCTTGGTTACTGGCTATTCTGATTCAGACTATGCTGGAGATGTTGACACAAGAAGATCGATGACTGGCTATGTGTTTACCCTTGGAGGATCTGTCGTCAGTTGGAAGGCAACTTT</gDNA_template>
            <first_frame> K  G  L  L  D  I  L  Q  L  E  I  H  H  S  R  T  V  *  L  S  G  *  I  K  H  F  W  K  E  Q  G  A  C  S  L  M  L  G  *  I  E  D  S  G  Q  K  R  L  V  Q  L  A  T  *  L  T  A  D  H  I  Q  A  Y  S  A  R  H  L  W  R  C  G  Q  E  K  L  L  I  I  Q  I  *  K  L  L  V  V  R  L  T  I  T  S  V  K  V  S  *  N  Q  E  L  K  R  E  Y  L  W  A  T  E  M  E  *  K  V  S  E  S  G  L  Q  Q  K  R  G  L  L  *  A  G  T  L  S  L  M  K  V  L  C  L  E  P  L  *  S  L  Q  L  R  Q  K  L  G  V  L  T  N  R  W  S  F  K  S  F  R  T  R  A  I  *  R  N  L  K  R  R  I  K  I  H  R  Q  K  L  I  F  Q  N  L  *  H  Q  I  S  I  R  V  *  L  K  I  G  Q  G  G  L  E  F  G  H  L  R  G  M  V  L  R  T  W  W  V  M  H  C  R  L  L  K  R  *  I  H  L  S  R  L  L  T  K  K  P  F  *  V  L  I  L  K  N  G  L  P  L  W  E  M  R  W  S  P  Y  T  R  I  R  H  G  I  W  S  Y  S  L  R  G  E  R  L  L  L  A  N  G  F  S  R  R  R  K  G  Y  H  Q  Q  K  E  S  S  I  K  P  G  L  L  P  E  V  S  T  K  E  R  E  W  T  T  M  R  S  S  H  Q  W  S  D  I  L  P  S  E  C  Y  *  R  *  L  H  I  R  I  W  S  L  N  N  L  M  *  R  Q  R  F  Y  M  E  S  W  R  K  R  Y  T  *  L  S  R  M  V  S  K  S  Q  G  R  K  I  T  S  A  S  *  R  S  P  Y  M  D  L  S  S  L  Q  G  S  D  I  K  G  L  T  A  I  W  *  S  W  A  I  L  G  A  H  M  I  V  V  S  T  T  I  G  S  M  M  I  H  S  S  I  W  C  F  M  *  M  I  C  *  *  L  Q  R  R  S  M  T  F  R  S  *  R  V  Y  L  V  L  S  L  R  *  R  I  W  E  P  L  R  R  F  *  G  W  R  S  L  E  T  E  R  E  G  N  F  S  C  H  R  E  A  T  F  R  R  S  W  R  G  L  A  C  L  H  L  S  P  L  I  P  P  V  L  P  I  S  I  S  L  P  C  S  L  H  S  Q  K  K  R  R  S  I  C  H  E  S  L  M  P  V  P  *  E  V  *  C  M  L  W  S  V  Q  G  Q  I  *  H  M  Q  S  V  *  *  A  D  S  W  D  N  Q  G  E  N  I  G  R  L  *  R  E  F  S  G  I  L  E  V  H  L  T  L  V  R  *  Y  S  V  L  G  Y  W  L  F  *  F  R  L  C  W  R  C  *  H  K  K  I  D  D  W  L  C  V  Y  P  W  R  I  C  R  Q  L  E  G  N  F </first_frame>
            <second_frame>  R  D  C  S  T  S  Y  S  *  K  Y  T  T  A  E  R  C  S  *  A  D  E  S  N  T  S  G  K  S  K  V  H  A  L  *  C  W  A  R  *  K  I  L  G  R  S  G  *  Y  S  L  L  L  D  *  P  R  T  T  Y  R  H  T  V  Q  D  T  Y  G  D  V  V  R  K  S  C  *  L  F  K  S  E  S  F  W  L  Y  G  L  L  S  R  Q  *  R  *  V  R  T  K  S  *  K  G  S  I  C  G  L  R  R  W  S  E  R  F  Q  N  L  V  S  S  R  K  E  G  Y  Y  E  Q  E  R  C  L  *  *  K  F  S  A  *  N  H  C  E  A  Y  N  Y  V  R  N  W  E  S  *  Q  T  G  G  V  S  S  H  S  E  R  E  R  F  K  G  T  *  R  G  G  S  R  S  T  D  R  N  *  Y  S  R  I  Y  D  I  R  Y  P  S  E  Y  S  S  R  S  A  K  E  G  W  S  S  A  T  Y  E  V  W  F  *  G  H  G  G  L  C  T  A  G  C  *  R  G  R  Y  I  *  A  V  Y  L  Q  R  S  H  F  K  F  *  F  *  K  M  V  C  R  Y  G  R  *  D  G  V  P  T  Q  E  S  D  M  G  S  G  H  T  A  F  G  E  K  D  Y  Y  L  Q  M  G  F  Q  E  E  G  R  D  I  T  S  R  R  S  Q  V  *  S  Q  G  C  C  Q  R  F  Q  P  K  R  G  S  G  L  Q  *  D  L  L  T  S  G  Q  T  Y  F  H  L  S  V  T  S  D  S  C  T  S  E  S  G  A  *  T  T  *  C  E  D  N  V  S  T  W  R  V  G  G  R  D  I  H  D  S  A  G  W  F  P  S  P  R  E  G  K  S  R  L  Q  V  E  E  V  L  I  W  T  *  A  V  S  K  A  V  I  *  K  V  *  Q  L  Y  G  E  V  G  L  Y  S  E  L  I  *  L  L  C  L  L  Q  *  A  Q  *  *  F  I  H  L  S  G  A  L  C  R  *  Y  V  D  S  C  K  E  E  V  *  H  S  E  A  E  G  F  T  *  C  *  V  *  D  E  G  S  G  S  R  S  E  D  F  R  D  G  D  H  *  R  Q  R  E  K  E  T  F  L  V  T  E  K  L  H  S  E  G  L  G  E  V  W  H  V  F  I  *  A  H  *  Y  P  Q  C  C  Q  Y  P  S  H  C  H  V  R  S  T  V  R  R  R  E  G  V  Y  V  T  S  P  L  C  Q  C  R  R  K  F  D  V  C  Y  G  L  Y  K  A  R  F  S  T  C  S  Q  C  S  E  Q  I  H  G  T  T  R  E  R  T  L  A  G  C  E  E  N  F  P  V  S  *  R  Y  I  *  R  W  S  G  D  T  Q  C  L  V  T  G  Y  S  D  S  D  Y  A  G  D  V  D  T  R  R  S  M  T  G  Y  V  F  T  L  G  G  S  V  V  S  W  K  A  T   </second_frame>
            <third_frame>   G  I  A  R  H  L  T  V  R  N  T  P  Q  Q  N  G  V  A  E  R  M  N  Q  T  L  L  E  R  A  R  C  M  L  S  N  A  G  L  D  R  R  F  W  A  E  A  V  S  T  A  C  Y  L  I  N  R  G  P  H  T  G  I  Q  C  K  T  P  M  E  M  W  S  G  K  A  A  D  Y  S  N  L  K  A  F  G  C  T  A  Y  Y  H  V  S  E  G  K  L  E  P  R  A  K  K  G  V  F  V  G  Y  G  D  G  V  K  G  F  R  I  W  S  P  A  E  K  R  V  I  M  S  R  N  V  V  F  D  E  S  S  L  L  R  T  I  V  K  P  T  T  T  S  E  T  G  S  L  D  K  Q  V  E  F  Q  V  I  Q  N  E  S  D  L  K  E  P  E  E  E  D  Q  D  P  Q  T  E  T  D  I  P  E  S  M  T  S  D  I  H  Q  S  I  A  Q  D  R  P  R  R  V  G  V  R  P  P  T  R  Y  G  F  E  D  M  V  G  Y  A  L  Q  V  A  E  E  V  D  T  S  E  P  S  T  Y  K  E  A  I  L  S  S  D  F  E  K  W  F  A  A  M  G  D  E  M  E  S  L  H  K  N  Q  T  W  D  L  V  I  Q  P  S  G  R  K  I  I  T  C  K  W  V  F  K  K  K  E  G  I  S  P  A  E  G  V  K  Y  K  A  R  V  V  A  R  G  F  N  Q  R  E  G  V  D  Y  N  E  I  F  S  P  V  V  R  H  T  S  I  *  V  L  L  A  I  V  A  H  Q  N  L  E  L  E  Q  L  D  V  K  T  T  F  L  H  G  E  L  E  E  E  I  Y  M  T  Q  P  D  G  F  Q  V  P  G  K  E  N  H  V  C  K  L  K  K  S  L  Y  G  L  K  Q  S  P  R  Q  *  Y  K  R  F  D  S  Y  M  V  K  L  G  Y  T  R  S  S  Y  D  C  C  V  Y  Y  N  R  L  N  D  D  S  F  I  Y  L  V  L  Y  V  D  D  M  L  I  A  A  K  K  K  Y  D  I  Q  K  L  K  G  L  L  S  A  E  F  E  M  K  D  L  G  A  A  Q  K  I  L  G  M  E  I  I  R  D  R  E  R  R  K  L  F  L  S  Q  R  S  Y  I  Q  K  V  L  A  R  F  G  M  S  S  S  K  P  I  D  T  P  S  A  A  N  I  H  L  T  A  M  F  A  P  Q  S  E  E  E  K  E  Y  M  S  R  V  P  Y  A  S  A  V  G  S  L  M  Y  A  M  V  C  T  R  P  D  L  A  H  A  V  S  V  V  S  R  F  M  G  Q  P  G  R  E  H  W  Q  A  V  K  R  I  F  R  Y  L  R  G  T  S  D  V  G  Q  V  I  L  S  A  W  L  L  A  I  L  I  Q  T  M  L  E  M  L  T  Q  E  D  R  *  L  A  M  C  L  P  L  E  D  L  S  S  V  G  R  Q  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0074N01.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="68285" stop="69274"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>987</number_coding_nucleotides>
                  <number_encoded_amino_acids>329</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GIARHLTVRNTPQQNGVAERMNQTLLERARCMLSNAGLDRRFWAEAVSTACYLINRGPHTGIQCKTPMEMWSGKAADYSNLKAFGCTAYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEKRVIMSRNVVFDESSLLRTIVKPTTTSETGSLDKQVEFQVIQNESDLKEPEEEDQDPQTETDIPESMTSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDFEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0074N01.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69470" stop="70132"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>660</number_coding_nucleotides>
                  <number_encoded_amino_acids>220</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YKRFDSYMVKLGYTRSSYDCCVYYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAAQKILGMEIIRDRERRKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAVGSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGQVILSAWLLAILIQTMLEMLTQEDR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0074N01.2" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69275" stop="69469"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>192</number_coding_nucleotides>
                  <number_encoded_amino_acids>64</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VLLAIVAHQNLELEQLDVKTTFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQ*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="-" PGL_start="92579" PGL_stop="88503"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="92579" e_stop="92545"/>
            <exon e_start="91199" e_stop="90261"/>
            <exon e_start="89394" e_stop="89323"/>
            <exon e_start="89228" e_stop="89199"/>
            <exon e_start="88860" e_stop="88503"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="1.000" acc_prob="0.845" e_score="0.914"/>
          <exon-intron don_prob="0.999" acc_prob="0.983" e_score="0.999"/>
          <exon-intron don_prob="0.998" acc_prob="0.990" e_score="1.000"/>
          <exon-intron don_prob="1.000" acc_prob="0.853" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.914">
            <gDNA_exon_boundary e_start="92579" e_stop="92545" e_length="35"/>
          </exon>
          <intron i_serial="1" don_prob="1.000" acc_prob="0.845">
            <gDNA_intron_boundary i_start="92544" i_stop="91200" i_length="1345"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="91199" e_stop="90261" e_length="939"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.983">
            <gDNA_intron_boundary i_start="90260" i_stop="89395" i_length="866"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="89394" e_stop="89323" e_length="72"/>
          </exon>
          <intron i_serial="3" don_prob="0.998" acc_prob="0.990">
            <gDNA_intron_boundary i_start="89322" i_stop="89229" i_length="94"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="89228" e_stop="89199" e_length="30"/>
          </exon>
          <intron i_serial="4" don_prob="1.000" acc_prob="0.853">
            <gDNA_intron_boundary i_start="89198" i_stop="88861" i_length="338"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="88860" e_stop="88503" e_length="358"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92579" stop="92545"/>
              <exon start="91199" stop="90261"/>
              <exon start="89394" stop="89323"/>
              <exon start="89228" stop="89199"/>
              <exon start="88860" stop="88503"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U571050" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTTACTCCTTGCAAAACTTGTACCTGCCAAAACGG : ATTTTGTTTGTCGTAACCATGGGATCTTACCTGAACTTCAAGAACTTTGCTGACACATCACAACCAGAGAGCAGTGGGAATAATAGTAATTCTTTTTTGGCCCAACAATCTTCCATATACTCGTTTACCTTTGATGAGCTGCAAAATACATGTGGACTTGGAAAAGATTTTGGGTCGATGAATATGGATGACCTCTTGAAGAACATTGAAGAGTCTCAAGCGTTGTCATCTTCTGCTGCTTTAGGGGGTAATTTGCAGAGACAGGGTTCTTTGACACTGCCTAGGACACTTAGTCAGAAAACTGTAGATGAAGTATGGAGAGACTTTCAGAAAGAGAGTGTTGTTGCTAATGATGCAAGTGGGACTGGAGGATCAAACTTTGGGCAGCGGGAATCTACCTTGGGAGAAATGACATTAGAAGAGTTTTTGGTTAGAGCAGGGGCCGTGCAAGAAGATATGCAACCAGCTGGATACTCAAATGATGTTACATTTGCTAGTGGTTTCACTCAACCTAGTTGTAGTGTGACCATAGCATTTCAACAAGCAACCCAAAACCCTGGACATCAAATTGCAGCGAATAACATATTTAATGTGGTCAGTACCACCACGTCTTCACCACAGCAGCCCCTTTTTCCCAAACAAACAACTGTGGAATTTGCATCACCCATGCAATTAGGGAGCCCAGGGAAAAGGCTTCCCATGTCTAATCCGTCTGCAAATACTAGTAGTGTCATGCAGGGTGGTGTTATGACCATGCCAGTAAAAGGAGTATCCCCTGGAAATCTTGATACATCTTCTCTTTCACCTTCACCTTATGCATGTGGTGAAGGTGGAAGAGGAAGGAGATCATGCACCTCTTTTGAAAAAGTTGTTGAGAGAAGGCGTAAGAGGATGATAAAGAACAGGGAGTCTGCGGCCAGATCAAGGGATCGGAAGCAG : GCATATACTTTAGAGTTGGAAGCTGAAGTAGCAAAGCTTAAAGAAATTAAGCAAGAGTTGCAGAAGAAACAG : GCTGAATTTATCGAGAAGCAGAAAAATCAG : TTATTGGAAAAGATGAATGTGCCATGGGAAAATAAACTAATATGCTTGCGAAGGACAGTGACGGGACCTTGGTAGTCAGTAGAAGAGCAAATTCCCGAGTAAACACTCGGAGAATTGGTAGACAGGAGATTGAAGTGAAATAGCTTTTCCTTCCTCTTTTTTGTTTCAACAAACAAGTTCAGAGCCTGCTCCTCGACCCTCCTCCCAGCCTGTGAATTAAAATATGTTCTAATTCACATATGTTGGTCACAGGATAGATAACTTTATGTATCGACTATAGTACAGGACAGGTGCTGTGTACCTGTACGTTATGTAAACAATGTTCTTGCATAAAGTTTCCTCATGTGCTTTTTTTGTT</gDNA_template>
            <first_frame> L  T  P  C  K  T  C  T  C  Q  N  G :   F  C  L  S  *  P  W  D  L  T  *  T  S  R  T  L  L  T  H  H  N  Q  R  A  V  G  I  I  V  I  L  F  W  P  N  N  L  P  Y  T  R  L  P  L  M  S  C  K  I  H  V  D  L  E  K  I  L  G  R  *  I  W  M  T  S  *  R  T  L  K  S  L  K  R  C  H  L  L  L  L  *  G  V  I  C  R  D  R  V  L  *  H  C  L  G  H  L  V  R  K  L  *  M  K  Y  G  E  T  F  R  K  R  V  L  L  L  M  M  Q  V  G  L  E  D  Q  T  L  G  S  G  N  L  P  W  E  K  *  H  *  K  S  F  W  L  E  Q  G  P  C  K  K  I  C  N  Q  L  D  T  Q  M  M  L  H  L  L  V  V  S  L  N  L  V  V  V  *  P  *  H  F  N  K  Q  P  K  T  L  D  I  K  L  Q  R  I  T  Y  L  M  W  S  V  P  P  R  L  H  H  S  S  P  F  F  P  N  K  Q  L  W  N  L  H  H  P  C  N  *  G  A  Q  G  K  G  F  P  C  L  I  R  L  Q  I  L  V  V  S  C  R  V  V  L  *  P  C  Q  *  K  E  Y  P  L  E  I  L  I  H  L  L  F  H  L  H  L  M  H  V  V  K  V  E  E  E  G  D  H  A  P  L  L  K  K  L  L  R  E  G  V  R  G  *  *  R  T  G  S  L  R  P  D  Q  G  I  G  S  R :   H  I  L  *  S  W  K  L  K  *  Q  S  L  K  K  L  S  K  S  C  R  R  N  R :   L  N  L  S  R  S  R  K  I  S :   Y  W  K  R  *  M  C  H  G  K  I  N  *  Y  A  C  E  G  Q  *  R  D  L  G  S  Q  *  K  S  K  F  P  S  K  H  S  E  N  W  *  T  G  D  *  S  E  I  A  F  P  S  S  F  L  F  Q  Q  T  S  S  E  P  A  P  R  P  S  S  Q  P  V  N  *  N  M  F  *  F  T  Y  V  G  H  R  I  D  N  F  M  Y  R  L  *  Y  R  T  G  A  V  Y  L  Y  V  M  *  T  M  F  L  H  K  V  S  S  C  A  F  F  V </first_frame>
            <second_frame>  L  L  L  A  K  L  V  P  A  K  T   : D  F  V  C  R  N  H  G  I  L  P  E  L  Q  E  L  C  *  H  I  T  T  R  E  Q  W  E  *  *  *  F  F  F  G  P  T  I  F  H  I  L  V  Y  L  *  *  A  A  K  Y  M  W  T  W  K  R  F  W  V  D  E  Y  G  *  P  L  E  E  H  *  R  V  S  S  V  V  I  F  C  C  F  R  G  *  F  A  E  T  G  F  F  D  T  A  *  D  T  *  S  E  N  C  R  *  S  M  E  R  L  S  E  R  E  C  C  C  *  *  C  K  W  D  W  R  I  K  L  W  A  A  G  I  Y  L  G  R  N  D  I  R  R  V  F  G  *  S  R  G  R  A  R  R  Y  A  T  S  W  I  L  K  *  C  Y  I  C  *  W  F  H  S  T  *  L  *  C  D  H  S  I  S  T  S  N  P  K  P  W  T  S  N  C  S  E  *  H  I  *  C  G  Q  Y  H  H  V  F  T  T  A  A  P  F  S  Q  T  N  N  C  G  I  C  I  T  H  A  I  R  E  P  R  E  K  A  S  H  V  *  S  V  C  K  Y  *  *  C  H  A  G  W  C  Y  D  H  A  S  K  R  S  I  P  W  K  S  *  Y  I  F  S  F  T  F  T  L  C  M  W  *  R  W  K  R  K  E  I  M  H  L  F  *  K  S  C  *  E  K  A  *  E  D  D  K  E  Q  G  V  C  G  Q  I  K  G  S  E  A   : G  I  Y  F  R  V  G  S  *  S  S  K  A  *  R  N  *  A  R  V  A  E  E  T   : G  *  I  Y  R  E  A  E  K  S   : V  I  G  K  D  E  C  A  M  G  K  *  T  N  M  L  A  K  D  S  D  G  T  L  V  V  S  R  R  A  N  S  R  V  N  T  R  R  I  G  R  Q  E  I  E  V  K  *  L  F  L  P  L  F  C  F  N  K  Q  V  Q  S  L  L  L  D  P  P  P  S  L  *  I  K  I  C  S  N  S  H  M  L  V  T  G  *  I  T  L  C  I  D  Y  S  T  G  Q  V  L  C  T  C  T  L  C  K  Q  C  S  C  I  K  F  P  H  V  L  F  L   </second_frame>
            <third_frame>   Y  S  L  Q  N  L  Y  L  P  K  R  :  I  L  F  V  V  T  M  G  S  Y  L  N  F  K  N  F  A  D  T  S  Q  P  E  S  S  G  N  N  S  N  S  F  L  A  Q  Q  S  S  I  Y  S  F  T  F  D  E  L  Q  N  T  C  G  L  G  K  D  F  G  S  M  N  M  D  D  L  L  K  N  I  E  E  S  Q  A  L  S  S  S  A  A  L  G  G  N  L  Q  R  Q  G  S  L  T  L  P  R  T  L  S  Q  K  T  V  D  E  V  W  R  D  F  Q  K  E  S  V  V  A  N  D  A  S  G  T  G  G  S  N  F  G  Q  R  E  S  T  L  G  E  M  T  L  E  E  F  L  V  R  A  G  A  V  Q  E  D  M  Q  P  A  G  Y  S  N  D  V  T  F  A  S  G  F  T  Q  P  S  C  S  V  T  I  A  F  Q  Q  A  T  Q  N  P  G  H  Q  I  A  A  N  N  I  F  N  V  V  S  T  T  T  S  S  P  Q  Q  P  L  F  P  K  Q  T  T  V  E  F  A  S  P  M  Q  L  G  S  P  G  K  R  L  P  M  S  N  P  S  A  N  T  S  S  V  M  Q  G  G  V  M  T  M  P  V  K  G  V  S  P  G  N  L  D  T  S  S  L  S  P  S  P  Y  A  C  G  E  G  G  R  G  R  R  S  C  T  S  F  E  K  V  V  E  R  R  R  K  R  M  I  K  N  R  E  S  A  A  R  S  R  D  R  K  Q  :  A  Y  T  L  E  L  E  A  E  V  A  K  L  K  E  I  K  Q  E  L  Q  K  K  Q  :  A  E  F  I  E  K  Q  K  N  Q  :  L  L  E  K  M  N  V  P  W  E  N  K  L  I  C  L  R  R  T  V  T  G  P  W  *  S  V  E  E  Q  I  P  E  *  T  L  G  E  L  V  D  R  R  L  K  *  N  S  F  S  F  L  F  F  V  S  T  N  K  F  R  A  C  S  S  T  L  L  P  A  C  E  L  K  Y  V  L  I  H  I  C  W  S  Q  D  R  *  L  Y  V  S  T  I  V  Q  D  R  C  C  V  P  V  R  Y  V  N  N  V  L  A  *  S  F  L  M  C  F  F  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0074N01.2" strand="-"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="92577" stop="92545"/>
                    <exon start="91199" stop="90261"/>
                    <exon start="89394" stop="89323"/>
                    <exon start="89228" stop="89199"/>
                    <exon start="88860" stop="88786"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1146</number_coding_nucleotides>
                  <number_encoded_amino_acids>382</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>YSLQNLYLPKRILFVVTMGSYLNFKNFADTSQPESSGNNSNSFLAQQSSIYSFTFDELQNTCGLGKDFGSMNMDDLLKNIEESQALSSSAALGGNLQRQGSLTLPRTLSQKTVDEVWRDFQKESVVANDASGTGGSNFGQRESTLGEMTLEEFLVRAGAVQEDMQPAGYSNDVTFASGFTQPSCSVTIAFQQATQNPGHQIAANNIFNVVSTTTSSPQQPLFPKQTTVEFASPMQLGSPGKRLPMSNPSANTSSVMQGGVMTMPVKGVSPGNLDTSSLSPSPYACGEGGRGRRSCTSFEKVVERRRKRMIKNRESAARSRDRKQAYTLELEAEVAKLKEIKQELQKKQAEFIEKQKNQLLEKMNVPWENKLICLRRTVTGPW*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="92546" e_stop="91187"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.996"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.996">
            <gDNA_exon_boundary e_start="92546" e_stop="91187" e_length="1360"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="92546" stop="91187"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567141" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GGGTAAACTTATTTTCTCTCTTCTCCCATTTTTACATATTAATTTTTTTCTCTTGATTTTTCACATATTATTATCTCATGTCCTAATCAAACTCGAAATGAAAAATCTTCACTCTTTTCTTGATTTTTTTTTGATGTTTAATTTGTTTTCTCAATTACAAATATGTTATTACTGATCTGACATTGTTTTAATTTTTTCGAAATGATTTATCAAAATGAGATAGTTGAAGGGTAGTTGATTGATTAATTAATTTGATGATGTTTTTTGGCACTTGAAATTATCTCTTATAGATCCATGCTTTTTTTTGTTTATGAATTCTATGATTCTGTATAGTGGGCAGTACTCGATGAATGAGTTCGATACTTAATTAGACAGTTGAATGAAGTCTTGATGTTAGTATAAAGTTTTAGATCCAAATATGTTGATGTTGAATGAAATTATGAGCTCTGAACAAAGTTAATAGATCCACTGTGTCGACAGTTTTGAGTTTTTATTATTTTGTGGAATTTACTTGAATAGTTGACTCTGGTTGAGTAGTTGATAGTTGAATGAAGTTTATCTTAGCTTCTGGGTTTTGTATTTTGGATCCAATCTTAACATAAGTGTTTTGCATTTTGAATGAGTTTTTGGACTTGAAATGAGTTTGAAGCAAAGATGGATCTACGGTGTAGCGTATCCCCTCAACAATTAGGTATTTTTTTTAAAAGAAAAATTATGTGTATATATAGATTGTGGATCTCCGAACATAAGATTAAACATTGGCTCAGTGGTTGAGGAATTCAAAATTCGGTTAGAGGTTTCAAGTTTGAAGCTCAAACACTACATTTTTATTTTTCGAATCCCCTTAGTCAAAATCATGGATCCGCCACGGGTTTGAAGAATGTTAATTGGTGCTAATTTTTTTAAATCTAAATGTGTACAAAAGGTGGTGGACTGAATCAGGTCAAACCATTAAATATAGATCTAGTTTGTATTTCATTCTCTCCATCATTGAGGTATTATAATCTGTGTTTAACCGAGATCTGCCTAATCATGATATTTCAGTTTTTCTGAGCTGTAATGAGCAAGATGTTAAGTGTTGTATTTTTCTTTACTGTTCTAATGTCCTTAAAGTGATCATCTTCAAGTCGGCAGTGAAGATTATATGTTTGAGCTTGTACGTAATCACCAATGTTGTAGCATTTTGTTAGGAAATGATTAAAATTCTTTGGAGGTGGTATACAATATTTGTTTATTGGTGAACATTCTATTATATGTTGTTGGACTACACCGAAATATAAAAATTGATTCCCGTGGTCGACTTCTACTGTTGTTTCTTACTGTCTTACTAATGAACTTTTGGATCAGATTTTGTTTGTCG</gDNA_template>
            <first_frame> G  *  T  Y  F  L  S  S  P  I  F  T  Y  *  F  F  S  L  D  F  S  H  I  I  I  S  C  P  N  Q  T  R  N  E  K  S  S  L  F  S  *  F  F  F  D  V  *  F  V  F  S  I  T  N  M  L  L  L  I  *  H  C  F  N  F  F  E  M  I  Y  Q  N  E  I  V  E  G  *  L  I  D  *  L  I  *  *  C  F  L  A  L  E  I  I  S  Y  R  S  M  L  F  F  V  Y  E  F  Y  D  S  V  *  W  A  V  L  D  E  *  V  R  Y  L  I  R  Q  L  N  E  V  L  M  L  V  *  S  F  R  S  K  Y  V  D  V  E  *  N  Y  E  L  *  T  K  L  I  D  P  L  C  R  Q  F  *  V  F  I  I  L  W  N  L  L  E  *  L  T  L  V  E  *  L  I  V  E  *  S  L  S  *  L  L  G  F  V  F  W  I  Q  S  *  H  K  C  F  A  F  *  M  S  F  W  T  *  N  E  F  E  A  K  M  D  L  R  C  S  V  S  P  Q  Q  L  G  I  F  F  K  R  K  I  M  C  I  Y  R  L  W  I  S  E  H  K  I  K  H  W  L  S  G  *  G  I  Q  N  S  V  R  G  F  K  F  E  A  Q  T  L  H  F  Y  F  S  N  P  L  S  Q  N  H  G  S  A  T  G  L  K  N  V  N  W  C  *  F  F  *  I  *  M  C  T  K  G  G  G  L  N  Q  V  K  P  L  N  I  D  L  V  C  I  S  F  S  P  S  L  R  Y  Y  N  L  C  L  T  E  I  C  L  I  M  I  F  Q  F  F  *  A  V  M  S  K  M  L  S  V  V  F  F  F  T  V  L  M  S  L  K  *  S  S  S  S  R  Q  *  R  L  Y  V  *  A  C  T  *  S  P  M  L  *  H  F  V  R  K  *  L  K  F  F  G  G  G  I  Q  Y  L  F  I  G  E  H  S  I  I  C  C  W  T  T  P  K  Y  K  N  *  F  P  W  S  T  S  T  V  V  S  Y  C  L  T  N  E  L  L  D  Q  I  L  F  V  </first_frame>
            <second_frame>  G  K  L  I  F  S  L  L  P  F  L  H  I  N  F  F  L  L  I  F  H  I  L  L  S  H  V  L  I  K  L  E  M  K  N  L  H  S  F  L  D  F  F  L  M  F  N  L  F  S  Q  L  Q  I  C  Y  Y  *  S  D  I  V  L  I  F  S  K  *  F  I  K  M  R  *  L  K  G  S  *  L  I  N  *  F  D  D  V  F  W  H  L  K  L  S  L  I  D  P  C  F  F  L  F  M  N  S  M  I  L  Y  S  G  Q  Y  S  M  N  E  F  D  T  *  L  D  S  *  M  K  S  *  C  *  Y  K  V  L  D  P  N  M  L  M  L  N  E  I  M  S  S  E  Q  S  *  *  I  H  C  V  D  S  F  E  F  L  L  F  C  G  I  Y  L  N  S  *  L  W  L  S  S  *  *  L  N  E  V  Y  L  S  F  W  V  L  Y  F  G  S  N  L  N  I  S  V  L  H  F  E  *  V  F  G  L  E  M  S  L  K  Q  R  W  I  Y  G  V  A  Y  P  L  N  N  *  V  F  F  L  K  E  K  L  C  V  Y  I  D  C  G  S  P  N  I  R  L  N  I  G  S  V  V  E  E  F  K  I  R  L  E  V  S  S  L  K  L  K  H  Y  I  F  I  F  R  I  P  L  V  K  I  M  D  P  P  R  V  *  R  M  L  I  G  A  N  F  F  K  S  K  C  V  Q  K  V  V  D  *  I  R  S  N  H  *  I  *  I  *  F  V  F  H  S  L  H  H  *  G  I  I  I  C  V  *  P  R  S  A  *  S  *  Y  F  S  F  S  E  L  *  *  A  R  C  *  V  L  Y  F  S  L  L  F  *  C  P  *  S  D  H  L  Q  V  G  S  E  D  Y  M  F  E  L  V  R  N  H  Q  C  C  S  I  L  L  G  N  D  *  N  S  L  E  V  V  Y  N  I  C  L  L  V  N  I  L  L  Y  V  V  G  L  H  R  N  I  K  I  D  S  R  G  R  L  L  L  L  F  L  T  V  L  L  M  N  F  W  I  R  F  C  L  S </second_frame>
            <third_frame>   V  N  L  F  S  L  F  S  H  F  Y  I  L  I  F  F  S  *  F  F  T  Y  Y  Y  L  M  S  *  S  N  S  K  *  K  I  F  T  L  F  L  I  F  F  *  C  L  I  C  F  L  N  Y  K  Y  V  I  T  D  L  T  L  F  *  F  F  R  N  D  L  S  K  *  D  S  *  R  V  V  D  *  L  I  N  L  M  M  F  F  G  T  *  N  Y  L  L  *  I  H  A  F  F  C  L  *  I  L  *  F  C  I  V  G  S  T  R  *  M  S  S  I  L  N  *  T  V  E  *  S  L  D  V  S  I  K  F  *  I  Q  I  C  *  C  *  M  K  L  *  A  L  N  K  V  N  R  S  T  V  S  T  V  L  S  F  Y  Y  F  V  E  F  T  *  I  V  D  S  G  *  V  V  D  S  *  M  K  F  I  L  A  S  G  F  C  I  L  D  P  I  L  T  *  V  F  C  I  L  N  E  F  L  D  L  K  *  V  *  S  K  D  G  S  T  V  *  R  I  P  S  T  I  R  Y  F  F  *  K  K  N  Y  V  Y  I  *  I  V  D  L  R  T  *  D  *  T  L  A  Q  W  L  R  N  S  K  F  G  *  R  F  Q  V  *  S  S  N  T  T  F  L  F  F  E  S  P  *  S  K  S  W  I  R  H  G  F  E  E  C  *  L  V  L  I  F  L  N  L  N  V  Y  K  R  W  W  T  E  S  G  Q  T  I  K  Y  R  S  S  L  Y  F  I  L  S  I  I  E  V  L  *  S  V  F  N  R  D  L  P  N  H  D  I  S  V  F  L  S  C  N  E  Q  D  V  K  C  C  I  F  L  Y  C  S  N  V  L  K  V  I  I  F  K  S  A  V  K  I  I  C  L  S  L  Y  V  I  T  N  V  V  A  F  C  *  E  M  I  K  I  L  W  R  W  Y  T  I  F  V  Y  W  *  T  F  Y  Y  M  L  L  D  Y  T  E  I  *  K  L  I  P  V  V  D  F  Y  C  C  F  L  L  S  Y  *  *  T  F  G  S  D  F  V  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0074N01.2"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 62 chains have been computed
$ 
$ memory statistics:
$ 23880 bytes spliced alignments in total
$ 11 spliced alignments have been stored
$ 2170 bytes was the average size of a spliced alignment
$ 12152 bytes predicted gene locations in total
$ 6 predicted gene locations have been stored
$ 2025 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 77 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 05:21:45
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