<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 05:41:21"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U570769" ref_strand="+" ref_description="SGN-U570769 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|82754279|gb|ABB89938.1| (e_value=6e-120) putative; ">
      <seq>gctacgtcgttcggcagacggtaaaaagccagaactagaaggagacgttgggaaactccataaaacccatgacaatgtttgtttaaatgcagctacagcaagcacgtctacaacaaaaggagctagtggaataagatatacaaatttaaatatgaacaaaatcttcgataaaccatttattccaaagaaccaaaaagactcattatttataccaccgcaaatacatacttactcagaaagtttaaaacaagataaaaaagcctacaaccacataacccgctcatatattgaaaacctttataaaatccaaaattatttaaactcaacacctagatctccaactaccaaaaaccctaacactgattttataacccaaaagctacaagggatataataagttaatagcacaaccgggcaccaatgcaaatctagtaaaaacatgttatagttatggattacttaatacagtttatacccaaacaggagatgaaatatctaccataccagagctatacaaagcctttatgaactataaaagaattactaaaggaacattgttttatataaagttttattcagcaccagcagagatattatttgatgagataaaaccaattatacaagttataaaaattggtttgaccagagatatgataattccagaagatatcggaatacaacaagaaatacaaaagattgagataccagaattctacgccaacaaaagagttataggaatagcaactatcctaaataaactaactaacaattatttaaacggaaactcagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="571" stop="1962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="871" g_stop="1662" g_length="792"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="792" r_length="792" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-U570769" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>792</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U570769" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="871" e_stop="1662"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTATGTCGATCGGAAGACAGAAAAATTCCAGAGCTACAAGGAGACGTTGGGAAACTCCATAAAACCCATGACAATGTTTGTTTAAATGCAGCTACAGCCAGCACATCTACAACAAAAGGAGTCAGTGGAATAAGATATACAAATTTAAATATGAACAAAATCTTTGATAAACCATTTATTCCAAAGAACCAAAAAGACTCATTATTTATACCACCACAAATAACTACTTACTCAGAAAGTTTAAGCCAAGATAAAAAAAGCCTACAACCACAAAACTCGCTCATATATTGAAAACCTTTATAAAAATTCAAAATTATTTAAACTCAACACCTAGATCTCCAACTACCAAAGACCCTAATACTGATTTTATAACCCAAAAGCTACAA-GGATATAATAAGTTAATAGCACAATCAGGCACCAATGCAAATCTAGTAAAAACATGTTATAGTTATGGACTACTTAGCATAGTTTATACCCAAACAGGAGATGAAATATCTACCATACCGGAGCTATACAAAGCCTTTATGAACTATAAAAGAATTACCAAAGGAACATTATTTTATATAAAGTTTTATTCAGCACCAGCAGAGATATTATTTGATGAGATAAAACCAATTATACAAGTTATAAAGATTGGTTTGACCAGAGATATGATAATTCCAGAAGATATCGAAATGCAGCAAGAAATACAAAGGATTGAGATACCAGAATTTTACGCCAACAAAAGAGTTATAGGGATAGCAACTATCCT-AATGAACTAACTAACAATTATTTAAACGGAAATTCAGTAT</genome_strand>
        <mrna_strand>GCTACGTCGTTCGGCAGACGGTAAAAAGCCAGAACTAGAAGGAGACGTTGGGAAACTCCATAAAACCCATGACAATGTTTGTTTAAATGCAGCTACAGCAAGCACGTCTACAACAAAAGGAGCTAGTGGAATAAGATATACAAATTTAAATATGAACAAAATCTTCGATAAACCATTTATTCCAAAGAACCAAAAAGACTCATTATTTATACCACCGCAAATACATACTTACTCAGAAAGTTTAAAACAAGAT-AAAAAAGCCTACAACCACATAACCCGCTCATATATTGAAAACCTTTAT-AAAATCCAAAATTATTTAAACTCAACACCTAGATCTCCAACTACCAAAAACCCTAACACTGATTTTATAACCCAAAAGCTACAAGGGATATAATAAGTTAATAGCACAACCGGGCACCAATGCAAATCTAGTAAAAACATGTTATAGTTATGGATTACTTAATACAGTTTATACCCAAACAGGAGATGAAATATCTACCATACCAGAGCTATACAAAGCCTTTATGAACTATAAAAGAATTACTAAAGGAACATTGTTTTATATAAAGTTTTATTCAGCACCAGCAGAGATATTATTTGATGAGATAAAACCAATTATACAAGTTATAAAAATTGGTTTGACCAGAGATATGATAATTCCAGAAGATATCGGAATACAACAAGAAATACAAAAGATTGAGATACCAGAATTCTACGCCAACAAAAGAGTTATAGGAATAGCAACTATCCTAAATAAACTAACTAACAATTATTTAAACGGAAACTCAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586406" ref_strand="+" ref_description="SGN-U586406 Tomato 200607#2 [10 ESTs aligned] ">
      <seq>aaaatctcttgttaattataattgtttatcatgtttgaataatgttataataaccatctttagaaagtttgctacagaaatattcttcgaataagtatgcccagactatgccatcctaaggttgaaaccggtaggcagagaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="2129" stop="2872"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="2430" g_stop="2572" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-U586406" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>143</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U586406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="2430" e_stop="2572"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCTCTTGTTGATAATAATTGTTTATCATATTTTAATAATGTTCTAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTGCGAATAGGTATGCTCAGACTATGCCATCCTAAGGTTGAAACCGATAAGCA-AGAAGG</genome_strand>
        <mrna_strand>AAAATCTCTTGTTAATTATAATTGTTTATCATGTTTGAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTTCGAATAAGTATGCCCAGACTATGCCATCCTAAGGTTGAAACCGGTAGGCAGAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586406" ref_strand="+" ref_description="SGN-U586406 Tomato 200607#2 [10 ESTs aligned] ">
      <seq>aaaatctcttgttaattataattgtttatcatgtttgaataatgttataataaccatctttagaaagtttgctacagaaatattcttcgaataagtatgcccagactatgccatcctaaggttgaaaccggtaggcagagaagg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="7365" stop="6623"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="7065" g_stop="6923" g_length="143"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="144" r_length="144" r_score="0.909"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-U586406" ref_strand="+">
        <total_alignment_score>0.909</total_alignment_score>
        <cumulative_length_of_scored_exons>143</cumulative_length_of_scored_exons>
        <coverage percentage="0.993" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U586406" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="7065" e_stop="6923"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAATCTTTTGTTGATTATAATTGTTTATCATGTTTTAATAATGTTCTAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTGCGAATAGGTATGCTCAGACTATGTCATCCTAAGGTTGAAATCGATAGGCA-AGAAGG</genome_strand>
        <mrna_strand>AAAATCTCTTGTTAATTATAATTGTTTATCATGTTTGAATAATGTTATAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTTCGAATAAGTATGCCCAGACTATGCCATCCTAAGGTTGAAACCGGTAGGCAGAGAAGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577328" ref_strand="+" ref_description="SGN-U577328 Tomato 200607#2 [2 ESTs aligned] ">
      <seq>ggtcgctcttagtactgttgggttatggacctttttcccttcctatgtggataaataaaagtccaatttggaccaacccatttttgcccataggcccatttttatgaggcaaatataaacctatttagggtcttattttcagacatacaagagtgttttttcagcagccaaaaagagagaaagagagattttcgcagtcaaaaatccagccataacaaccaacttcaaattgcgatccccgcttagtttcttgtccgattgagctgatttttggacaacatattatcttcatctcaatctttgattaggaactgacagagttggatttggtggcctgcagcttcagttttgctgtcgtgaacagtagctgcgaaattggtgattttgctcctttaattctctagatttggagcaatcttattttgttgttgctcgttgtttgacactttgttttgtggacaattttggagaacaatattgtaactcttggtgattatagtggagcttttggacccgtggttttttactcttcacatcgaaggggtttccacgtaaatcttgatgtcttgtgcgattggcttattattgtcatgtgatatttgtatcggtgaattacttgctgccttactatcacattgcttgtggttgtttgttttctcttggttcaaatcgaaaaaggcaagtatagacttgggaattcttccgctgtgatcctgtcaggcattctttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="15216" stop="16534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="15518" g_stop="16234" g_length="717"/>
          <reference_exon_boundary r_type="cDNA" r_start="13" r_stop="730" r_length="718" r_score="0.919"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-U577328" ref_strand="+">
        <total_alignment_score>0.919</total_alignment_score>
        <cumulative_length_of_scored_exons>717</cumulative_length_of_scored_exons>
        <coverage percentage="0.982" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U577328" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="15518" e_stop="16234"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AATTGTTGGGTTATGGGCCTTTTTTCCTTCCTATGTGGATAAATAAAAGCCCAATTTGGACCAACCCATTTTTTCCCATAGGCCCATTCTTATGAGGCAAATATAAGCCTATTTA-GGTCTTATTTTCATATACACAGAGAGT-TTTTTTCAGCAGCCAAAAAGAGAGAAAGAGGGCAGTTTTCGCAGTC-AAAATTCAGCCCTAACAGCCAACTTCAAATTGCGATTCCCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGGACAGCATATTATCTTCATCTCAATGTTTGATTAGGAACTGACAGAGTTGAATTTGGTGACCTGCAGCTTCAGTTTTGCTGTCGTGAACAGTAGTTGCGAAATTAGTGATTTTGCTCCTTTAATTCTCTAGATTTGGTGCAATCTTATTTTGTTGTTGCTCGTTGTTTGGTAC-TTGTTTTCTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGTCCCGTGGTTTTTTACTCTTCACGTCGAAGGGTTTTCCACGTAAATCTTGGTGTCTTGTGTGATTGGTTTATTATTGCCTTGTTATATTTGTTTGGTTGAATTACTTGCTGCCTTACTATCATATTGCTTGTGGTTGTTTGTCTTCTCTTGGTTCAAATCGAGAAGGGAAAGTATAGACTTGGGTATTCTTCCGCTGTTATCCTGTCAGGCATTCTTTG</genome_strand>
        <mrna_strand>TACTGTTGGGTTATGGACCTTTTTCCCTTCCTATGTGGATAAATAAAAGTCCAATTTGGACCAACCCATTTTTGCCCATAGGCCCATTTTTATGAGGCAAATATAAACCTATTTAGGGTCTTATTTTCAGACATACA-AGAGTGTTTTTTCAGCAGCCAAAAAGAGAGAAAGAGAG-A-TTTTCGCAGTCAAAAATCCAGCCATAACAACCAACTTCAAATTGCGATCCCCGCTTAGTTTCTTGTCCGATTGAGCTGATTTTTGGACAACATATTATCTTCATCTCAATCTTTGATTAGGAACTGACAGAGTTGGATTTGGTGGCCTGCAGCTTCAGTTTTGCTGTCGTGAACAGTAGCTGCGAAATTGGTGATTTTGCTCCTTTAATTCTCTAGATTTGGAGCAATCTTATTTTGTTGTTGCTCGTTGTTTGACACTTTGTTTTGTGGACAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGACCCGTGGTTTTTTACTCTTCACATCGAAGGGGTTTCCACGTAAATCTTGATGTCTTGTGCGATTGGCTTATTATTGTCATGTGATATTTGTATCGGTGAATTACTTGCTGCCTTACTATCACATTGCTTGTGGTTGTTTGTTTTCTCTTGGTTCAAATCGAAAAAGGCAAGTATAGACTTGGGAATTCTTCCGCTGTGATCCTGTCAGGCATTCTTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U581130" ref_strand="+" ref_description="SGN-U581130 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|87162706|gb|ABD28501.1| (e_value=2e-99) Zinc; (*ATH) AT3G13810.1 (e_value=7e-96) | Symbol: None | zinc finger (C2H2 type) family protein, similar to finger protein pcp1 GB:S48856 from (Solanum tuberosum) contains Pfam domain, PF00096: Zinc finger, C2H2 type | chr3:4544497-4547417 FORWARD | Aliases: MCP4.2; (*SWP) sp|Q9ZWA6|MGP_ARATH (e_value=9e-92) Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP; ">
      <seq>tcagacctttagttttcttgaacaagatagggaactattaattattactctttgctggcctctttcttcttttaccttttgtcatctctagggtttcagacaaagcagccaaatatattttttatatatatatatatataaacaacaaactacatctcttacttacaccaactactctacttttgcttttattttttatgagagaatgataaaaggtatgctaggagatgatagtatgtcaaatttaacaagtgcatctaatgaagcaagcatatcttcaaccaacaatagaattgaaattggtagtcatgttctctacccacaactacaaaacattcaaacccaaccacctcctaacaagaagaagagaaatctaccaggaaatccagatccagaagcagaagttgtagcattatctccaagaagtctattggcaaccaatagatttgtatgtgagatatgtaacaaaggatttcaaagagatcaaaatcttcaactacatagaagaggacataatttgccctggaaattaaagcaaagaagcaataaagaagtgaagaagaaagtatatgtgtgtccagaagcatcatgtgtacatcatcatccatcaagagccttaggggatctgactgggattaagaagcatttctgtagaaaacatggtgagaaaaaatggaaatgtgaaaaatgttcaaaacgttatgcagttcaatctgattggaaagctcactctaagatttgtggtacaagagagtatagatgtgattgtggaacccttttctctaggagggatagtttcattacacacagagccttttgtgatgctttaacagaagaaagttcaagaacaataatcccaccaccaaattcttcaacttctcatcatcttaatcttcatacacgtcaatatcatccatttgaaaataataataataataataatactactgcaccttctttgccatgtactagttttgatgaaggatttggtcgcggcgcgcatttgatgagacaaggtaaagaaaataatgaagggttgacaagagaatttttgggacttagagca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="19336" stop="22681"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="19636" g_stop="20024" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="389" r_length="389" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20025" i_stop="20231" i_length="207">
            <donor d_prob="0.991" d_score="1.00"/>
            <acceptor a_prob="0.946" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="20232" g_stop="20628" g_length="397"/>
          <reference_exon_boundary r_type="cDNA" r_start="390" r_stop="786" r_length="397" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="20629" i_stop="21717" i_length="1089">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="21718" g_stop="21830" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="787" r_stop="899" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="21831" i_stop="22109" i_length="279">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="22110" g_stop="22155" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="900" r_stop="945" r_length="46" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="22156" i_stop="22260" i_length="105">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="22261" g_stop="22381" g_length="121"/>
          <reference_exon_boundary r_type="cDNA" r_start="946" r_stop="1066" r_length="121" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-U581130" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1066</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U581130" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="19636" e_stop="20024"/>
          <exon e_start="20232" e_stop="20628"/>
          <exon e_start="21718" e_stop="21830"/>
          <exon e_start="22110" e_stop="22155"/>
          <exon e_start="22261" e_stop="22381"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAGACCTTTAGTTTTCTTGAACAAGATAGGGAACTATTAATTATTACTCTTTGCTTTCCTCTTTCTTCTTTTACCTTTTGTCATCTCTAGGGTTTCAGACAAAGCAGCCAAATATATTTTTTATATATATATATATATAAACAACAAACTACATCTCTTACTTACACCAACTACTCTACTTTTGCTTTTATTTTTTATGAGAGAATGATAAAAGGTATGCTAGGAGATGATAGTATGTCAAATTTAACAAGTGCATCTAATGAAGCAAGCATATCTTCAACCAACAATAGAATTGAAATTGGTAGTCATGTTCTCTACCCACAACTACAAAACATTCAAACCCAACCACCTCCTAACAAGAAGAAGAGAAATCTACCAGGAAATCCAGGTAACTATATACTATTAATTACTCGGCGTCGCACAGTTGAAATTTCAAGAGTCAACTATATGTTGTTCCTTCATCATAATCTTTTTTATATGTCTTTTAAATATTTTTAGTGGTTGATTATTGTCAACTATATCTGAATCTTGAAATTTCAATTATGGGACATAAAGAATATAGAGTATAATTAATGAATTTTTGATGATGTATTAGATCCAGAAGCAGAAGTTGTAGCATTATCTCCAAGAAGTCTATTGGCAACCAATAGATTTGTATGTGAGATATGTAACAAAGGATTTCAAAGAGATCAAAATCTTCAACTACATAGAAGAGGACATAATTTGCCCTGGAAATTAAAGCAAAGAAGCAATAAAGAAGTGAAGAAGAAAGTATATGTGTGTCCAGAAGCATCATGTGTACATCATCATCCATCAAGAGCCTTAGGGGATCTGACTGGGATTAAGAAGCATTTCTGTAGAAAACATGGTGAGAAAAAATGGAAATGTGAAAAATGTTCAAAACGTTATGCAGTTCAATCTGATTGGAAAGCTCACTCTAAGATTTGTGGTACAAGAGAGTATAGATGTGATTGTGGAACCCTTTTCTCTAGGTATATATTCTCTCATCTATGCATGTCTATGTTAATTGTTTTTCAAATTTTGAATTGATTAAAATTATTATTTCCAACTTTTAATCATTATCTTTTTCAGATGATATTATAATTTACTCAACTCAATAGTTTTAGCTTATTTGTCTTAAGCATCCATGTGCTCCTTTAAATAATATCTATGAAGAACCCAATTTACCTGCATTGTATGATTTTTTGCACACAAGTTTTTTAAAAGAAGAAGAATTTTGAAATGTGTGGTATAAATAAATTTTAAATGTTTATGTGATTATAAATAATTTTAGTAAAAGTAAAAATGAAATTTTAAGGTGGCCATATTATTTCTAATTATAAAAAAAAAGTGATATTTTTTTATATGTAAAAGTACTTCTACATTACATTCTCCTTATTAGCATATAGATATATCTACAATCCTTCTTTAATAAAAAAATATCACACATGTATTAGAATTTACATAAGTAATAGTACCATGCTTGTTGTTGGTTTAGTTAGGATTATATATAAAATTAACAGACGATTTGGTTTGCAATTTATAAACCTGCATAATTAAGTGATATAGTATAAGTTAATTAATTACGAGGAAATTTATGTATAATTTTATGCAAAATAAAATGATTAATACATAAATAACTGATCTGTATATAACGTACATTTCTGCATAACTAATTCATTTTTAACTAATTAATATCTACTTTAACTCTAGCGAGCTATTTTGAATCAAAACTACCTAAAAGACATCAAGCAATTAGCAAAGTTCACGTGTGTAAGTTCATGTGTACAACTGAATAAATGAGTTTGTCCATTTGTGTGTCTGTATGTGAGAGTGATAATTGAGGGTCCACACCTTGCTGCAAAAGCAATTTGCATACAAAAACTTTACTGCAGATTCGTATTTTACTACTAAAACTAATAATAATAATAATTGTGATGTCTCTAAAGCTAGAAGAGATAAAAGTGAAAGAAAGAAAAACACAAAAAAAGAGAGCAGTACTCATGCACTTTTTATTAGTAGTAGTACTCTTAATATTCATTCAACAATTCTTCATGTGTGATACTTTTGTTTTTACACAGGAGGGATAGTTTCATTACACACAGAGCCTTTTGTGATGCTTTAACAGAAGAAAGTTCAAGAACAATAATCCCACCACCAAATTCTTCAACTTCTCATCATCTTAATCTTCATACACTTCAAAACTTCCAAATGAAACAAGAACAGCAACAACAAAATAACGACCTCTCCTCTCAGTTATTCATTCAAAACCCTAATGGCAATAGTAGTAACATGTTCGGTGCACCACCTCCTCATATGAGCGCAACTGCATTGCTACAAAAAGCAGCACAAATTGGAGTAACTTCTTCTTCTCATACTGCTAATAACATGAGCGCCACAACTTTTTTCAGTCCTACTACCAGTACAACAACTGGCATTGCAATGTCAGGATCAGGATCAGGAGCAGGAGTAGCACGTCAATATCATCCATTTGAAAATAATAATAATAATAATAATACAAACACTGATTTTGTTACTGGTAATACGTCTTTTCCTGATTTTGGTGCGAGTGTCACCCCTGGGTTCATGGAACAAGTCCATGACATGCAAAACATGATGGCTACTACTGCACCTTCTTTGCCATGTACTAGTTTTGATGAAGGATTTGGTCGCGGCGCGCATTTGATGAGACAAGGTAAAGAAAATAATGAAGGGTTGACAAGAGATTTTTTGGGACTTAGAGCA</genome_strand>
        <mrna_strand>TCAGACCTTTAGTTTTCTTGAACAAGATAGGGAACTATTAATTATTACTCTTTGCTGGCCTCTTTCTTCTTTTACCTTTTGTCATCTCTAGGGTTTCAGACAAAGCAGCCAAATATATTTTTTATATATATATATATATAAACAACAAACTACATCTCTTACTTACACCAACTACTCTACTTTTGCTTTTATTTTTTATGAGAGAATGATAAAAGGTATGCTAGGAGATGATAGTATGTCAAATTTAACAAGTGCATCTAATGAAGCAAGCATATCTTCAACCAACAATAGAATTGAAATTGGTAGTCATGTTCTCTACCCACAACTACAAAACATTCAAACCCAACCACCTCCTAACAAGAAGAAGAGAAATCTACCAGGAAATCCAG...............................................................................................................................................................................................................ATCCAGAAGCAGAAGTTGTAGCATTATCTCCAAGAAGTCTATTGGCAACCAATAGATTTGTATGTGAGATATGTAACAAAGGATTTCAAAGAGATCAAAATCTTCAACTACATAGAAGAGGACATAATTTGCCCTGGAAATTAAAGCAAAGAAGCAATAAAGAAGTGAAGAAGAAAGTATATGTGTGTCCAGAAGCATCATGTGTACATCATCATCCATCAAGAGCCTTAGGGGATCTGACTGGGATTAAGAAGCATTTCTGTAGAAAACATGGTGAGAAAAAATGGAAATGTGAAAAATGTTCAAAACGTTATGCAGTTCAATCTGATTGGAAAGCTCACTCTAAGATTTGTGGTACAAGAGAGTATAGATGTGATTGTGGAACCCTTTTCTCTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGATAGTTTCATTACACACAGAGCCTTTTGTGATGCTTTAACAGAAGAAAGTTCAAGAACAATAATCCCACCACCAAATTCTTCAACTTCTCATCATCTTAATCTTCATA.......................................................................................................................................................................................................................................................................................CACGTCAATATCATCCATTTGAAAATAATAATAATAATAATAATAC.........................................................................................................TACTGCACCTTCTTTGCCATGTACTAGTTTTGATGAAGGATTTGGTCGCGGCGCGCATTTGATGAGACAAGGTAAAGAAAATAATGAAGGGTTGACAAGAGAATTTTTGGGACTTAGAGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U592407" ref_strand="+" ref_description="SGN-U592407 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|87162706|gb|ABD28501.1| (e_value=6e-16) Zinc; ">
      <seq>gtggaacccttttctctaggagggatagtttcattacacacagagccttttgtgatgctttaacagaagaaagttcaagaacaataatcccaccaccaaattcttcaacttctcatcatcttaatcttcatacacttcaaaacttccaaatgaaacaagaacagcaacaacaaaataacgacctctcctctcagttattcattcaaaaccctaatggcaatagtagtaacatgttcggtgcaccacctcctcatatgagcgcaactgcattgctacaaaaagcagcacaaattggagtaacttcttcttctcatactgctaataacatgagcgccacaacttttttcagtcctactaccagtacaacaactggcattgcaatgtcaggatcaggatcaggagcaggagtagcacgtcaatatcatccatttgaaaataataataataataataatacaaacactgattttgttactggtaatacgtcttttcctgattttggtgcgagtgtcacccctgggttcatggaacaagtccatgacatgcaaaacatgatggctactactgcaccttctttgccatgtactagttttgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="20310" stop="22595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="20610" g_stop="20628" g_length="19"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="19" r_length="19" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="20629" i_stop="21717" i_length="1089">
            <donor d_prob="0.993" d_score="0.00"/>
            <acceptor a_prob="0.997" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="21718" g_stop="22295" g_length="578"/>
          <reference_exon_boundary r_type="cDNA" r_start="20" r_stop="597" r_length="578" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-U592407" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>597</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U592407" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="20610" e_stop="20628"/>
          <exon e_start="21718" e_stop="22295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGGAACCCTTTTCTCTAGGTATATATTCTCTCATCTATGCATGTCTATGTTAATTGTTTTTCAAATTTTGAATTGATTAAAATTATTATTTCCAACTTTTAATCATTATCTTTTTCAGATGATATTATAATTTACTCAACTCAATAGTTTTAGCTTATTTGTCTTAAGCATCCATGTGCTCCTTTAAATAATATCTATGAAGAACCCAATTTACCTGCATTGTATGATTTTTTGCACACAAGTTTTTTAAAAGAAGAAGAATTTTGAAATGTGTGGTATAAATAAATTTTAAATGTTTATGTGATTATAAATAATTTTAGTAAAAGTAAAAATGAAATTTTAAGGTGGCCATATTATTTCTAATTATAAAAAAAAAGTGATATTTTTTTATATGTAAAAGTACTTCTACATTACATTCTCCTTATTAGCATATAGATATATCTACAATCCTTCTTTAATAAAAAAATATCACACATGTATTAGAATTTACATAAGTAATAGTACCATGCTTGTTGTTGGTTTAGTTAGGATTATATATAAAATTAACAGACGATTTGGTTTGCAATTTATAAACCTGCATAATTAAGTGATATAGTATAAGTTAATTAATTACGAGGAAATTTATGTATAATTTTATGCAAAATAAAATGATTAATACATAAATAACTGATCTGTATATAACGTACATTTCTGCATAACTAATTCATTTTTAACTAATTAATATCTACTTTAACTCTAGCGAGCTATTTTGAATCAAAACTACCTAAAAGACATCAAGCAATTAGCAAAGTTCACGTGTGTAAGTTCATGTGTACAACTGAATAAATGAGTTTGTCCATTTGTGTGTCTGTATGTGAGAGTGATAATTGAGGGTCCACACCTTGCTGCAAAAGCAATTTGCATACAAAAACTTTACTGCAGATTCGTATTTTACTACTAAAACTAATAATAATAATAATTGTGATGTCTCTAAAGCTAGAAGAGATAAAAGTGAAAGAAAGAAAAACACAAAAAAAGAGAGCAGTACTCATGCACTTTTTATTAGTAGTAGTACTCTTAATATTCATTCAACAATTCTTCATGTGTGATACTTTTGTTTTTACACAGGAGGGATAGTTTCATTACACACAGAGCCTTTTGTGATGCTTTAACAGAAGAAAGTTCAAGAACAATAATCCCACCACCAAATTCTTCAACTTCTCATCATCTTAATCTTCATACACTTCAAAACTTCCAAATGAAACAAGAACAGCAACAACAAAATAACGACCTCTCCTCTCAGTTATTCATTCAAAACCCTAATGGCAATAGTAGTAACATGTTCGGTGCACCACCTCCTCATATGAGCGCAACTGCATTGCTACAAAAAGCAGCACAAATTGGAGTAACTTCTTCTTCTCATACTGCTAATAACATGAGCGCCACAACTTTTTTCAGTCCTACTACCAGTACAACAACTGGCATTGCAATGTCAGGATCAGGATCAGGAGCAGGAGTAGCACGTCAATATCATCCATTTGAAAATAATAATAATAATAATAATACAAACACTGATTTTGTTACTGGTAATACGTCTTTTCCTGATTTTGGTGCGAGTGTCACCCCTGGGTTCATGGAACAAGTCCATGACATGCAAAACATGATGGCTACTACTGCACCTTCTTTGCCATGTACTAGTTTTGATG</genome_strand>
        <mrna_strand>GTGGAACCCTTTTCTCTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGATAGTTTCATTACACACAGAGCCTTTTGTGATGCTTTAACAGAAGAAAGTTCAAGAACAATAATCCCACCACCAAATTCTTCAACTTCTCATCATCTTAATCTTCATACACTTCAAAACTTCCAAATGAAACAAGAACAGCAACAACAAAATAACGACCTCTCCTCTCAGTTATTCATTCAAAACCCTAATGGCAATAGTAGTAACATGTTCGGTGCACCACCTCCTCATATGAGCGCAACTGCATTGCTACAAAAAGCAGCACAAATTGGAGTAACTTCTTCTTCTCATACTGCTAATAACATGAGCGCCACAACTTTTTTCAGTCCTACTACCAGTACAACAACTGGCATTGCAATGTCAGGATCAGGATCAGGAGCAGGAGTAGCACGTCAATATCATCCATTTGAAAATAATAATAATAATAATAATACAAACACTGATTTTGTTACTGGTAATACGTCTTTTCCTGATTTTGGTGCGAGTGTCACCCCTGGGTTCATGGAACAAGTCCATGACATGCAAAACATGATGGCTACTACTGCACCTTCTTTGCCATGTACTAGTTTTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U584187" ref_strand="+" ref_description="SGN-U584187 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|30526336|gb|AAP32310.1| (e_value=8e-138) putative FtsH protease [Lycopersicon esculentum]; (*ATH) AT2G26140.1 (e_value=3e-131) | Symbol: FTSH4 | encodes an FtsH protease that is localized to the mitochondrion | chr2:11138656-11142402 REVERSE | Aliases: T19L18.5, T19L18_5, FTSH4; (*SWP) sp|Q8LQJ8|FTSH5_ORYSJ (e_value=1e-132) Cell division protease ftsH homolog 5, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH5; ">
      <seq>tctaaatgaggaagtgcagccgaccatgcaaacaatacaagatttgccgacgttaagggtgttgatgaggctaaaggggagttggaagaaattgttcactatctccgagaccctaagcgattcactcgtcttggtggcaaactcccaaagggtgtgctacttgttggtcctcctggaaccggtaagaccatgttggcaagagctatagcaggagaagctggggttccctttttctcatgcagtggtagtgagtttgaggaaatgtttgtgggtgttggagcccggagagtaagagacctttttgcagctgctaagaaacgatcaccctgcattatattcattgatgaaattgatgccattggaggaagccgtaacccaaaggaccaacaatatatgaggatgactttgaatcagttgcttgttgagctggatgggttcaaacaaaatgatggagtcattgtgattgcggccactaacttcccagaatcattggacaaggcactggtgagacctggacgattcgatcgcaacattgttgtcccaaatcctgatgttgaaggtcggaagcagattctggaatctcacatgtcaaagattgtcaaggcagatgatgtcgaccttatgatcatttctagggggactcctgggttttccggggctgaccttgccaatttggttaacattgctgctgtgaaggcctgcaatggaaggtgctaaagctgtaagcttggctgatcctagagtatgctaaggacaagatcatgatgggaagtgagcgcaaatcagctttcatatccaaagagacgagaaagcttacagcctaccatgaaggtggccatgctcttgtggctattcatacagatggggctcttccagtgcacaaggcaaccattgttccacgtggaatggctcttggtatggttgctcaattgccaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="39481" stop="43475"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="39781" g_stop="39898" g_length="118"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="117" r_length="117" r_score="0.983"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="39899" i_stop="41769" i_length="1871">
            <donor d_prob="0.964" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="41770" g_stop="42246" g_length="477"/>
          <reference_exon_boundary r_type="cDNA" r_start="118" r_stop="594" r_length="477" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="42247" i_stop="42834" i_length="588">
            <donor d_prob="0.960" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="42835" g_stop="43175" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="595" r_stop="937" r_length="343" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-U584187" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>936</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U584187" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="39781" e_stop="39898"/>
          <exon e_start="41770" e_stop="42246"/>
          <exon e_start="42835" e_stop="43175"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCTAAATGAGGAAGTGCAGCCGACCATGGAAACCAATACAAGATTTGCCGACGTTAAGGGTGTTGATGAGGCTAAAGGGGAGTTGGAAGAAATTGTTCACTATCTCCGAGACCCTAAGGTGAGTTTGTATGGGAGGTTTATTCAGTAACCACAAGAGCAATATATTCTCCTGTCAGCGTCAAAATTAATATAAGAAATTTTATTATTTGTGTCGAAGTCCTTGTGTGTCAGTAAAAGTAATGCTGGAAAGTCTGATATTGCCCTTGATGTTACAGTTGAGATTGGAAATGCAGGGCCGAAGTATATCTCTTTTAATTTATCTGCCTTTTCCCACCAAAAGTTCAATGAAGATGAAAATGACCTGAGAACCTGACAAGGATATATGTAGCCTGAGACAGTGTTATCAAAGGGGAAAGCACCAAAAGCTCTATGATCCGTTGGGGCTTTAATCACAAAGCACAAATAGAGCATGGGCTTTAATGAAAAAAGGCGCAAAGGGAGAAAAACTTGCACATTTATTTGTTTAGTCCAAGACTAATAATTATAAACATGTGGTTGACAGCATACCCACATTGCTGAGGAATATAACTTTACCTTGCTCAAAAAACAAACTAATAATTATAAACATGAATGACAAATAAATGAACAAAATTGAAAAAAGATTAAGATAACGGGAAATATCGATTGTTTAGTGTCACCTCTTCAAAATAGGCTGATGGACAAGGAAAAATATGTCTTAGAAAGCGAGCGAAGCAATCATCACATTTTTAGCCTAGCTTCAGGGCTTAAGCAAACCTTCAGCGTGCATTTGACAGCACTGACCCGAGAACATCAACCATCTTTTGTTAGTTAAATGTACTAACTGTACATTTTTCCTTTTTCTTGTGAAAAATGGACTTGCAAATTTGCAGCAAGCCCTTCCTCCCCTCATTGTCTGGAAAAGCTTCTAAAAGTCTATCATTTGTCAATTATATCCCTATATGTGTGGTATTGGGGGGAAAGGAAGGGTAGAAGAACTGACAAAAAGATTATAAGGGTTATTTCCCTTGAGTTAATACGTAGCTTCTCATCATTCAATTCCTCAATTGGATTTTCACATGGCTGAATATGAAAAAATTTCAGTTATCTGAAAAATGACCCCTAATTCTTTCTTTTTTTTCCGAAGACTGGTAATTTAATGTAAACAGGTATACTGCACAAGCAGTTTAGTCCCCCAAAAGTATAAATAGAAAAGTAGTGAACTTACTATCTGTATAGCTTGTTGCATACTGTCTAGAACATCAAAAATTATTCAGCTTCCACTAAATATTCTTGCTTACACCAAAATAATGAAGGGGCCAAGCAGTTCATCTTCAACTTCTGAATACTGCAGTTTTTGTCTCAAAACATCTCTGATTCCTTTTTCTTCAACCAGTCCACCAAATGCATGCTGGGATGATTCTTCATCTCTCTTTCTGAATGGTTACATGCACATCTCTGCTCCAACTATTTAGCACATCCAATATACCTCCTGGCATCACCCTGATAATTTCCCCTAAGTTGATAAATTTTTTGCTTATCTGATCTGTCCACTCTCAATGTAAAAAAAGAGGGTCTGATTGTCTGTGCCTGTTCTCCATAGGTAAAATCTAGATCATAACTGGTGCCGCCTTTTTATCTGTGCACTCTCAGTATAAGAAGGCTTTATCTCCAGTTCACCTTTGTCAACTTTTCTGAAAGGGAAATTGGTGACAATTCTGATTTTTGACTCACACTCACATTGAACATATCAAAGTTTTCGTGCTGTTGCTAATGTATGACTTTCTAATTTGGTTGGTAATTGCACTTAATTGTGTCAATATCTTTTTAGATCTTATGTGTTTCCCTTAATTTTAATTGTGTTTGTTTACCATTGACCTTTTGGCTTAGTCTTGATGGGAGCTTTTCAGATGATTTGTTTTAAAGCTGCGAGGTAGATGTTTTTACAGTTCCTTATTTTGACCTTTGCAGCGATTCACTCGTCTTGGTGGCAAACTCCCAAAGGGTGTGCTACTTGTTGGTCCTCCTGGAACCGGTAAGACCATGTTGGCAAGAGCTATAGCAGGAGAAGCTGGGGTTCCCTTTTTCTCATGCAGTGGTAGTGAGTTTGAGGAAATGTTTGTGGGTGTTGGAGCCCGGAGAGTAAGAGACCTTTTTGCAGCTGCTAAGAAACGATCACCCTGCATTATATTCATTGATGAAATTGATGCCATTGGAGGAAGCCGTAACCCAAAGGACCAACAATATATGAGGATGACTTTGAATCAGTTGCTTGTTGAGCTGGATGGGTTCAAACAAAATGATGGAGTCATTGTGATTGCGGCCACTAACTTCCCAGAATCATTGGACAAGGCACTGGTGAGACCTGGACGATTCGATCGCAACATTGTTGTCCCAAATCCTGATGTTGAAGGTCGGAAGCAGATTCTGGAATCTCACATGTCAAAGGTATTGTTTCTGGACAATGAGGCATTTCTATATACCCTGCAGTTTCTAGGTCATTGCTCTCATGAACTATTTGTAGGGACATGCAGCTATTCTTATGCTTTTCTAATAGCCGACAGATTTTCTTTGACTATATCTCTTTTAGCTTTTTAAACAAGAAATATGCATGTACACATTGTCTTGCATCCTTTTTTCTATTGATGAATCTAATTCTATTGACCTATACTGTGAAATGATTGAAGTATTTGAAGACATCCTTTGGAATTAGTCTGACCTGGTACAATTGAGTTGCCTACTCGTGAAGGTTCATTGTACATATCTTCCCTTGTGGCATTTTTTATCCATCACATTTTACTTTGACATTGTTGGTTGGCAGCACCTATATTTATGTGAGTTTAATCTTGCAAGAATTTTCTACCATGTCAAACTGGAGTTGGTAGCCTCAAAACATTCCTTTGTTTCCACCATGCATGGTTCATTTTGACCATCTTTCTAAGCTGGATTGTTAACTGCAGATGCAACTGCAATTTTCAAGGGTTTTACTTAGCATCATTTCTAATCTTTCTGTCAAAAACATTTCCTATCTGGCAGATTGTCAAGGCAGATGATGTCGACCTTATGATCATTTCTAGGGGGACTCCTGGGTTTTCCGGGGCTGACCTTGCCAATTTGGTTAACATTGCTGCTGTGAAGG-CTGCAATGGAAGGTGCTAAAGCTGTAAGCTTGGCTGAT-CTAGAGTATGCTAAGGACAAGATCATGATGGGAAGTGAGCGCAAATCAGCTTTCATATCCAAAGAGACGAGAAAGCTTACAGCCTACCATGAAGGTGGCCATGCTCTTGTGGCTATTCATACAGATGGGGCTCTTCCAGTGCACAAGGCAACCATTGTTCCACGTGGAATGGCTCTTGGTATGGTTGCTCAATTGCCAGA</genome_strand>
        <mrna_strand>TCTAAATGAGGAAGTGCAGCCGACCATGCAAA-CAATACAAGATTTGCCGACGTTAAGGGTGTTGATGAGGCTAAAGGGGAGTTGGAAGAAATTGTTCACTATCTCCGAGACCCTAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATTCACTCGTCTTGGTGGCAAACTCCCAAAGGGTGTGCTACTTGTTGGTCCTCCTGGAACCGGTAAGACCATGTTGGCAAGAGCTATAGCAGGAGAAGCTGGGGTTCCCTTTTTCTCATGCAGTGGTAGTGAGTTTGAGGAAATGTTTGTGGGTGTTGGAGCCCGGAGAGTAAGAGACCTTTTTGCAGCTGCTAAGAAACGATCACCCTGCATTATATTCATTGATGAAATTGATGCCATTGGAGGAAGCCGTAACCCAAAGGACCAACAATATATGAGGATGACTTTGAATCAGTTGCTTGTTGAGCTGGATGGGTTCAAACAAAATGATGGAGTCATTGTGATTGCGGCCACTAACTTCCCAGAATCATTGGACAAGGCACTGGTGAGACCTGGACGATTCGATCGCAACATTGTTGTCCCAAATCCTGATGTTGAAGGTCGGAAGCAGATTCTGGAATCTCACATGTCAAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTCAAGGCAGATGATGTCGACCTTATGATCATTTCTAGGGGGACTCCTGGGTTTTCCGGGGCTGACCTTGCCAATTTGGTTAACATTGCTGCTGTGAAGGCCTGCAATGGAAGGTGCTAAAGCTGTAAGCTTGGCTGATCCTAGAGTATGCTAAGGACAAGATCATGATGGGAAGTGAGCGCAAATCAGCTTTCATATCCAAAGAGACGAGAAAGCTTACAGCCTACCATGAAGGTGGCCATGCTCTTGTGGCTATTCATACAGATGGGGCTCTTCCAGTGCACAAGGCAACCATTGTTCCACGTGGAATGGCTCTTGGTATGGTTGCTCAATTGCCAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U602841" ref_strand="+" ref_description="SGN-U602841 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|13540823|gb|AAK29467.1| (e_value=3e-11) polyprotein-like [Lycopersicon chilense]; (*SWP) sp|P10978|POLX_TOBAC (e_value=6e-11) Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum; ">
      <seq>aaagccatagtgctcctaaactcgttgccatcttcctacgatactttatcaacaaccattttacatggtaaggattctattgagttgaaggatgtcacatcagcccttttgcttaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="62564" stop="61849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="62264" g_stop="62149" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="116" r_length="116" r_score="0.931"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-U602841" ref_strand="+">
        <total_alignment_score>0.931</total_alignment_score>
        <cumulative_length_of_scored_exons>116</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U602841" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="62264" e_stop="62149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCCGTAGTGCTCCTAAACTTGTTACCATCTTCCTACAATACTTTAGCAACAACCATTTTACATGGTAAGGACTCTATTGAGTTGAATGATGTCACATCAGCCCTTTTGCTTAA</genome_strand>
        <mrna_strand>AAAGCCATAGTGCTCCTAAACTCGTTGCCATCTTCCTACGATACTTTATCAACAACCATTTTACATGGTAAGGATTCTATTGAGTTGAAGGATGTCACATCAGCCCTTTTGCTTAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566712" ref_strand="+" ref_description="SGN-U566712 Tomato 200607#2 [13 ESTs aligned] (*GB) gi|157339276|emb|CAO43817.1| (e_value=7e-102) unnamed; (*ATH) AT5G11910.1 (e_value=2e-97) | Symbol: None | esterase/lipase/thioesterase family protein, low similarity to cinnamoyl ester hydrolase CinI (Butyrivibrio fibrisolvens) GI:1622732; contains Interpro entry IPR000379 | chr5:3836338-3838214 REVERSE | Aliases: F14F18.80, F14F18_80; ">
      <seq>acctcttctttccttttgttgtatttaggatcaaattaatccaatatcataatatttatttcatataaaaataaaaaataatttattttgtattattagatttttttaaggatcattttgtgaaacattatattattagaatttatttattacctatcttacaagcataataatctcttccttactaggaaacttgaagagaccaaaagctttgttcagatggctccgtccccttcaatccctaatctgcaagaaattcggcgtaagtgtgtgacagtacataacagtcatggtgagaaactggtgggcgtgctacatgaaacaaattccctggagcttgtaattatctgccacggtttcaaatcatcgaaggatcggattcccatggtgaatcttgctgctgcttatgagaaagaaggaatcagtgccttccgctttgactttgcaggaaatggtgaaagcgaaggttcctttcagtatggtaactaccgcagagaagctgatgatcttcgtgccatagtcgagcacttccataaggaggagcgtttcatagcagcaatagttggtcatagcaaaggaggaaatgttgtactcttgtatgcttcgaactacaaggatgtacaaactgtcatcaatatttctgggcgcttcaatcttgagagagggatagagcatcgcttgggcagagacttcaaagagaagataaagcataacggttttattgatgttagaaatagaaaaggaaggttcaagtatcgtgtcactgaggaaagtttgatggaccgtctaacaactgatactcgtggatcatgtcaaagtatcaccaataactgcagggtattgacggtccatggttcaatggatgaaatggtgccagttgaagatgctatggaatttgccaagaatgtgtcaaatcataaattacaaattattgaaggagctgatcatgaattcactttgcatcaagatgagttgtcttccgttgtggttgcttttgtgaaagcaggtttaggtggaagaaactacatggctatgccatctgagtcatgcaaaagaacaagtggatgtatacattcacgattttgatccagtatccttatgttgtgtacaagttaattatttaccaacaacaagaaacagacaccaaaacagcttgtaactttgtaaatgagcatagccactgttgtaatctcaccgctaattaaatgaagtatttgaaggaccaaataccaaaactcggggcatcacatgaaatttataggtactgcagaagatggggaagaaaacaagaaaaggatattaatgtagtaatggcggttgttttctttcctatttttgctggaaagaaccatcattcaacattctttgaacttctgtacaattttatatcaaacattgatttatacaagtagtgaaatgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="66413" stop="74336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66713" g_stop="66965" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66966" i_stop="68223" i_length="1258">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68224" g_stop="68342" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="372" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68343" i_stop="69172" i_length="830">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69173" g_stop="69255" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="373" r_stop="455" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69256" i_stop="69902" i_length="647">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69903" g_stop="70024" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="456" r_stop="577" r_length="122" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="70025" i_stop="71118" i_length="1094">
            <donor d_prob="0.000" d_score="1.00"/>
            <acceptor a_prob="0.960" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="71119" g_stop="71283" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="578" r_stop="742" r_length="165" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="71284" i_stop="73152" i_length="1869">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="73153" g_stop="73246" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="743" r_stop="836" r_length="94" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="73247" i_stop="73451" i_length="205">
            <donor d_prob="0.986" d_score="1.00"/>
            <acceptor a_prob="0.998" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="73452" g_stop="74036" g_length="585"/>
          <reference_exon_boundary r_type="cDNA" r_start="837" r_stop="1421" r_length="585" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-U566712" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>1421</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U566712" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66713" e_stop="66965"/>
          <exon e_start="68224" e_stop="68342"/>
          <exon e_start="69173" e_stop="69255"/>
          <exon e_start="69903" e_stop="70024"/>
          <exon e_start="71119" e_stop="71283"/>
          <exon e_start="73153" e_stop="73246"/>
          <exon e_start="73452" e_stop="74036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTCTTCTTTCCTTTTGTTGTATTTAGGATCAAATTAATCCAATATCATAATATTTATTTCATATAAAAATAAAAAATAATTTATTTTGTATTATTAGATTTTTTTAAGGATCATTTTGTGAAACATTATATTATTAGAATTTATTTATTACCTATCTTACAAGCATAATAATCTCTTCCTTACTAGGAAACTTGAAGAGACCAAAAGCTTTGTTCAGATGGCTCCGTCCCCTTCAATCCCTAATCTGCAAGGTATTGAATCTTTACTATGCAAAGGAACATATATTGAATCTTTTAGATCATCAAGATTCAAGAAGAGTTCGTGTTATGTGATTTTTCTGGGGTTTCTAATATTTTACTGAATTTGATCGTTTTTAAATTGGATTTTCTGAGAATAGAATTTTGGGTTTTTTCCATTGTTGTATTTGCTCCGTTTCATATATATATATATATATATATATATATAAACCACTCGGTTTCAGTTCACACTATCAAGTTTTAGTATTGTATGGTGAAAATCGTAGCACCCAATTTGATTTCTATCGATGATAGTACTATGTTTCAATTCAAATGTTACCATACTGCAAAAGCTAGCTACTAATGTAGGAGAGCCCAACATTATATAAGCTCCCCATTAATCATGGTTTTGATTCTTCAGGAAAAGAATTTATTTTTATTGTATGATTGGCTGAAATTTTGCATTGTATAGTTGTCATACAACCCCAAAAAAGAAAGAGAAATATCTAGGTGGCCCTTTTTACACGGACAACGGTTGAATCAAATATGAAATGCCTAAAGAAATTTCTCTCCGCTTATGTTTAGATGACCTTATGGTAATTGGATAGGCCATTGTGACTTGATAGTTCTTATTAATGTAGGTTCCAATCATTTTTAGTCATAAGGAAGAAAATATCAACACTATATGTGAGACAAGGCAATAAAAAGGAAGTCTGTTGTCTCGAATGACAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCCAGCCCCACATTAAGCAAAGTGAAGCCCGGTATCTAAATGGAGAAGGATAGAGGGGCGGGCCCATTAGCCACCGAGTTTAGAAGGGGCTGTGGTTGGTCCAAAGGGTGGTGGGTCACAGGCGGATTTCTCGGTTATAAAAAAAAGAAGTCTTTTGCTATTTGATAATGTATTTAAGTTTCACATTAGACTATATTTAGGCATAACACGATAATGATCTAACTGTAGACCTTTTTTTAAAAAAGAAAACGTAATATTTAAGTCTTATACAGTAGTTCAATAGCAGTTAATGGATGTCAATCAATGATACTGTAGTTTTGATGACCTTTCAACTTTCTATGATGCTGTAGTATTGTGATTTGTGCATGAGTTTTTATAACAGTTAATGAATGTGAATCACGGATGCTGTAGTTTAGTTATCCTTGCAATTATCTATGTCCCATTGACTGTGTTGGATGATACCGATCTTTTGTTTTTATCACCCTCCCTTTTTTCTTTTTCTTCCATAGAAATTCGGCGTAAGTGTGTGACAGTACATAACAGTCATGGTGAGAAACTGGTGGGCGTGCTACATGAAACAAATTCCCTGGAGCTTGTAATTATCTGCCACGGTTTCAAATCATCGAAGGTTTGTCACAATAATTTGAACACGTAGGAATTACAGCTCCTAATTATGTGGCTTATTCATATAATCATTTGTTTGATTTTTGCTGCATGTTGTTCTTGGTCGATGTATAATTTTTTTTATGAGAAGTAGATATTCTTATATAAAATATGGTTTATTGCTTTTTCTATGCAGCAACATGCAAGCTTAGCTTGAATTTGGTATTAAATTCTTTTAGCAACTTCTTTTTGCTATAACTGAGTGTAGCGGAATTTGTATTGAGAGATACATTCTCTTGCTTCTATATCCATCCTCCCCTCCTCCCAACCCAACTACCATACCCCAAGAAAAAACATAGGAAGGTTTTTTTACTTTTTTTGCACTACCTGTAAGCATTTTGAATAAGAATTAAATCGCTGTTTTAAATGTCTGAGTACTCTCATCATAACTTCCATCCTTCATTGAAGAACAAATGAATTGCACCCTGAGAAATATGTGGTGCATTAGTGCATCTACTTGTCCTTGTATATGCTACTACTCCTATTGTTTGCTATATTATGTTTTACTATTGTTGAATCTAGTCTGCTGACATGCTTCCTTCCTATCTAGAAAGATATTATTATTGCTTATTTACTAAGATAAAATTCATTTAGGGATTCTTCTAGAGACTGGACATACGGGGCAAAGGCCTAAATGGACTGAATATTTTGCTTTCTACTACATTATGTGATTCAGTCCAGCAACATCCAACTCAGTGGCTGTTCAACTGTTTTTTTGTCGTTTTATTGTGCAATTTATGGACATTGATTGTGATTGACTAATAATCTTCTTTATCAATTTTGATTTAACTTCAGGATCGGATTCCCATGGTGAATCTTGCTGCTGCTTATGAGAAAGAAGGAATCAGTGCCTTCCGCTTTGACTTTGCAGGAAATGGGTATGTTCAAACACAAAAGCCAATATAGAAACCTCTAGATTAGCAAATAAATGGAAAGGGAGTGCTGCTCCCAGTGAACTTTGTTCTTCTCGTATTCTTGATCTGTGAACTTAGATTTACTCAAATGAATGGTTATTGAATTTTCTCCTTTTTGGGAAGGTGAGGAATATCTACTTGGAGTATTATAAACTTGCAAATTCTTTAGGTTATTGGGAGAACTAAATATATATGTATCTGGATTGCTGCTGCATATGCGTATGGACCAAAATTACATTTATTTAACTTCGATACTTTGTTTTGTTCTCTTCTTAACTTTTTCCTTTTCACTTGCAAGTATTAGGAGCTCCTCGCATACTTGTCTAGTGTTGTTTCATATACACTATATTGGCCTTAAAGTAGCTCTAGTTGATTCTTTTGACTTCAATGAACAATTTACTGCTTCCAGCTTGTTGAATTGGAATCTTACAGATAGGGTTCTGTCAGATGGATCTCCTCTTCAAGTTTTCTCAGGATTAAACCTGACTTACATTATGCATAGCATTATATTCTCTATATGGAGATGATAAATTTCTAATTTCTAAATATTATGAACACAGTAAAAATAATTGAAATGAACTACTGAAAACTCACTTTGTTTTTGGTGTCAGTGAAAGCGAAGGTTCCTTTCAGTATGGTAACTACCGCAGAGAAGCTGATGATCTTCGTGCCATAGTCGAGCACTTCCATAAGGAGGAGCGTTTCATAGCAGCAATAGTTGGTCATAGCAAAGGTTTAGCCTTTGAAAGCTAACTTATGTCTGATCTTGGGAAGATACGCCGTGTTTCTCTTTTCCTTTCCCCATTCCTAGTTCTCTTGCTAGGGGTGTGAATGGTGGTGTTTGGAGGATTACAGTACCACTATACTGGAACAGTACATGCAGTCTAACTGATGTTTCGACCAGTAGCAATGCCACTTTTCGCTGCTGTTTGATTCGAGTCATTGATAGATAGAAGCTTTCTTGTCATTACTGCTTATCATACTTGATGCGTTCACGTAGGAATTTTACATTTTGTCCTTGCAATTTATGTTAAATCTGCTGAGTAAGTTATGTTTGAGTGCATAAATGAATACCCTTTCTTTGTTAGTAGGTAAGTTTTTCTCATTAGGTCATCAATATTTTCCTGGATTGGGATTCGTAAATATGTTAATAGATTCTTGATCTGTATCTTCCATTTTTGGGTGTGTGTGTTATGTCTTTGTTGGGGGTTCTTGTTTTGGTTCAGTACTTCAGGGATTATTAACAGTACTTTTTGCAAGAATATGTGTGGGTTGAAAATTGTGTGTTCATACTCGAACTTTTGAGTGTTCTTATTTCATTATGAGCTTTTTAAACATTGAAGAAGGTTTTCCTTTTCAAGTAAATAGTTCTTTGTTAAAATCAAATTATGATTGCTGATTTAGCAATTTTTGGTTTACTGTTATGTTCATTTTAAATTTAACTTTAAAAGGTAGCAGTAAATGTTGACAACCTTCATGTTTTACCCCAGCATTATATGGTCCTGCTAACTGCTGATGTTTATGATGGTATTTTCTCTTGTCCATATTCTACTTAATTTCTTATCAGTAAGAGTTGCACAAGTACTTTGAATTGTCATGATAGTGATGTATTGATCTCACAGGAGTCGGGACACAGTCAAATTTACAAGGAAAGATAGTATCTTCTTGTGCTATAGTTTGCATTGTATCCTCTCTTCACATAATCAACACATACTGCACCTCAAATTAAGTTATAGTAACTATCTCCAGCTTATTTTTCTGCATGCATATCGTATGACCTCTAATGTCCCCGCTGAAGTGTATTTTTTTGTGATAAATTACCTACAGGAGGAAATGTTGTACTCTTGTATGCTTCGAACTACAAGGATGTACAAACTGTCATCAATATTTCTGGGCGCTTCAATCTTGAGAGAGGGATAGAGCATCGCTTGGGCAGAGACTTCAAAGAGAAGATAAAGCATAACGGTTTTATTGATGTTAGAAATAGAAAAGGTATGCTTAATGGACTTCTTTTCCTTTTGTGTTCTTAGTAATCGTCATATTTCTGTCCCATTTTCTGTTGGATGTTCTTTGGTATGGATCATTGGATGTTTCACACTTCTAAAACTTCTAAAAAGCTGCTAAAAAATGACTGACCAAAAAGCGAGGGACAACGTCGCTCCAAAACATGATGCCATTTGCAACGTTATCCGTCATTTTTATTATTTTCTTAGTTTTTTGTACAAATGATGGACAATGACTCTATGTCCGTCGCTTTTTTTTTTGGGCGGATTTTTGCGCCAAATATACATATAATTAATAATTATTTATTTAATATACGTAGAGACGCCATCTATTGCTTTTAATTTAATATAATTATTTTTAAATTAGTAAATAACTACGTCATCCGTCATACGTAAAACGATGGATGACGTGGTTATTTAATTAAAAACGACGGACGATGTCTCTTCGTATATGAAATAAATAATTACTAATTATATATACATATAAATATATATGGCTCAAAAAAGCGATAGACATAGATTCACTGTCCGTCACTTTTTGTAAAAAATAAGAAAAACGACGTACAGCGTTGCAAATGGTGTCGTTTTTTGGAGCAACACCGCCTGTCACTTTTTGGTCTGTAGATTTTTAGCAGGTTTTTAGTAGTGTCAGTGGATGATAGTAAATTAAACCACTTAGGGAGGTAGATGACATTGTTAGATGACTTGGTGTGGCTGGTTTAGCTAATGGAAATCATTTCGTACAGTTGATTAGACAAGATATGGACTGTAAATGTGAGGTACAGCACAAGTTTGGTTGATGAAAATGACATAATATTATGCTTCAATAGATAAGTTCTGATGATTACAAGTCTGGAACTAAAGACTTGGTAAATATGGAATGTGGCATTCTTTTCTAAATAAACTAAAGCAGAATGTGAGACACATAAATTGAAACGGGGGAACACATCAATATAAAAATTTAAAAATGTAACAAATATGAAGGGGCAAAACCTTAGTATAATGAAGAATCACACTCCATTCACTGAGTGAGTTGCTTCGAAATAGTGTTATTATACTTCAAGCCCATGCCCAGCACATATTTCAGACGTTGCTCTGCATCAACTATCGTGAATATGTCGCTTCATTCTTATTCATAATTATTTGATCCTATATTTAAATGATACCCGATGATCTTTCGCTTCCGTTCCCAAGAAATATAAACATTCTTGCAGCAACTCCTTGCTTCTTTTTTTTTTGTATGTTAAATGAAGTTTATGCGTTCTCAATTAACTCGAGTTTTAACTTTGTAATTCACTTCAAATTTTTTGTTGTAATTTATATTTATTACTAGTCTCCACAAAATAACGTAAAAGGGAGTGTGTTTTGGTGGAAAAAAGGAAAAACTTATTTTGAGGCTTTTATTATGAAATAAAAAGAGCAACAGTAAAACCCCTTTGTCATGTCTGGTTTTGTCCAATTCGCCCCTTCCCATGCTAGTGGGTTTGCCTCAGTTCTGCCTTAGAGTCTAGGCGAATCTATGTGCAAAATTCTGGGTACATCATTGCACCAAAAGAGGCATAACAAAGATGAATTCTAGGTAAACCTTGTGCTGTTGATCCTATGCATTCTCTAATTTGTGGTTGTCTCCTCCACCGTTCTTAGGTTGAGAGTGATCAGTTCTATTTTCTATTCTGATATCCTTATCAAATATCCTAGACTTGACTGCATGTAGGACACCTGTGGGAGAAAAACAACGAGAAAGTCTAATTTAACATACCCACGAATGATATGGTAACCCAATTCCTTTTGTCTTGATAGATTTTGAGATTGCCTTTAGTTGTTAGTCCTACATACTGCCATCTCTTGCTATTTGCAGGAAGGTTCAAGTATCGTGTCACTGAGGAAAGTTTGATGGACCGTCTAACAACTGATACTCGTGGATCATGTCAAAGTATCACCAATAACTGCAGGTCAGGAATTGATATTTTGATTATTACTAAGTGATTCTTAAGTTTTCACATCATATCTACTGTATGAATACAACCTTTTCAACAGTAGGGCACTAATTTGTTTTCTGTGCCTATTGTGTGCACGTCTCAGTATGAGTCCACTTTTGCTTGTGAATGGTTATTTGTTCATCAACTGTGTATTAAACCTGCTGGGTTAATATAATAGGGTATTGACGGTCCATGGTTCAATGGATGAAATGGTGCCAGTTGAAGATGCTATGGAATTTGCCAAGAATGTGTCAAATCATAAATTACAAATTATTGAAGGAGCTGATCATGAATTCACTTTGCATCAAGATGAGTTGTCTTCCGTTGTGGTTGCTTTTGTGAAAGCAGGTTTAGGTGGAAGAAACTACATGGCTATGCCATCTGAGTCATGCAAAAGAACAAGTGGATGTATACATTCACGATTTTGATCCAGTATCCTTATGTTGTGTACAAGTTAATTATTTACCAACAACAAGAAACAGACACCAAAACAGCTTGTAACTTTGTAAATGAGCATAGCCACTGTTGTAATCTCACCGCTAATTAAATGAAGTATTTGAAGGACCAAATACCAAAACTCGGGGCATCACATGAAATTTATAGGTACTGCAGAAGATGGGGAAGAAAACAAGAAAAGGATATTAATGTAGTAATGGCGGTTGTTTTCTTTCCTATTTTTGCTGGAAAGAACCATCATTCAACATTCTTTGAACTTCTGTACAATTTTATATCAAACATTGATTTATACAAGTAGTGAAATGTT</genome_strand>
        <mrna_strand>ACCTCTTCTTTCCTTTTGTTGTATTTAGGATCAAATTAATCCAATATCATAATATTTATTTCATATAAAAATAAAAAATAATTTATTTTGTATTATTAGATTTTTTTAAGGATCATTTTGTGAAACATTATATTATTAGAATTTATTTATTACCTATCTTACAAGCATAATAATCTCTTCCTTACTAGGAAACTTGAAGAGACCAAAAGCTTTGTTCAGATGGCTCCGTCCCCTTCAATCCCTAATCTGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCGGCGTAAGTGTGTGACAGTACATAACAGTCATGGTGAGAAACTGGTGGGCGTGCTACATGAAACAAATTCCCTGGAGCTTGTAATTATCTGCCACGGTTTCAAATCATCGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGGATTCCCATGGTGAATCTTGCTGCTGCTTATGAGAAAGAAGGAATCAGTGCCTTCCGCTTTGACTTTGCAGGAAATGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAGCGAAGGTTCCTTTCAGTATGGTAACTACCGCAGAGAAGCTGATGATCTTCGTGCCATAGTCGAGCACTTCCATAAGGAGGAGCGTTTCATAGCAGCAATAGTTGGTCATAGCAAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAATGTTGTACTCTTGTATGCTTCGAACTACAAGGATGTACAAACTGTCATCAATATTTCTGGGCGCTTCAATCTTGAGAGAGGGATAGAGCATCGCTTGGGCAGAGACTTCAAAGAGAAGATAAAGCATAACGGTTTTATTGATGTTAGAAATAGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTTCAAGTATCGTGTCACTGAGGAAAGTTTGATGGACCGTCTAACAACTGATACTCGTGGATCATGTCAAAGTATCACCAATAACTGCAG.............................................................................................................................................................................................................GGTATTGACGGTCCATGGTTCAATGGATGAAATGGTGCCAGTTGAAGATGCTATGGAATTTGCCAAGAATGTGTCAAATCATAAATTACAAATTATTGAAGGAGCTGATCATGAATTCACTTTGCATCAAGATGAGTTGTCTTCCGTTGTGGTTGCTTTTGTGAAAGCAGGTTTAGGTGGAAGAAACTACATGGCTATGCCATCTGAGTCATGCAAAAGAACAAGTGGATGTATACATTCACGATTTTGATCCAGTATCCTTATGTTGTGTACAAGTTAATTATTTACCAACAACAAGAAACAGACACCAAAACAGCTTGTAACTTTGTAAATGAGCATAGCCACTGTTGTAATCTCACCGCTAATTAAATGAAGTATTTGAAGGACCAAATACCAAAACTCGGGGCATCACATGAAATTTATAGGTACTGCAGAAGATGGGGAAGAAAACAAGAAAAGGATATTAATGTAGTAATGGCGGTTGTTTTCTTTCCTATTTTTGCTGGAAAGAACCATCATTCAACATTCTTTGAACTTCTGTACAATTTTATATCAAACATTGATTTATACAAGTAGTGAAATGTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U566711" ref_strand="+" ref_description="SGN-U566711 Tomato 200607#2 [5 ESTs aligned] (*GB) gi|157339276|emb|CAO43817.1| (e_value=4e-41) unnamed; (*ATH) AT5G11910.1 (e_value=7e-38) | Symbol: None | esterase/lipase/thioesterase family protein, low similarity to cinnamoyl ester hydrolase CinI (Butyrivibrio fibrisolvens) GI:1622732; contains Interpro entry IPR000379 | chr5:3836338-3838214 REVERSE | Aliases: F14F18.80, F14F18_80; ">
      <seq>caggaagagaccaaaagctttgttcagatggctccgtccccttcaatccctaatctgcaagaaattcggcgtaagtgtgtgacagtacataacagtcatggtgagaaactggtgggcgtgctacatgaaacaaattccctggagcttgtaattatctgccacggtttcaaatcatcgaaggatcggattcccatggtgaatcttgctgctgcttatgagaaagaaggaatcagtgccttccgctttgactttgcaggaaatggtgaaagcgaaggttcctttcagtatggtaactaccgcagagaagctgatgatcttcgtgccatagtcgagcacttccataaggaggagcgtttcatagcagcaatagttggtcatagcaaaggtttagcctttgaaagctaacttatgtctgatcttgggaagatacgccgtgtttctcttttcctttccccattcctagttctcttgctaggggtgtgaatggtggtgtttggaggattacagtaccactatactggaacagtacatgcagtctaactgatgtttcgaccagtagcaatgccacttttcgctgctgtttgattcgagtcattgatagatagaagctttcttgtcattactgcttatcatacttgatgcgttcacgtaggaattttacattttgtccttgcaatttatgttaaatctgcctgagtaagttatgtttgagtgcataaatgaataccctttctttgttagtaggtaagtttttctcattaggtcatcaatattttcctggattgggattcgtaaatatgttaatagattcttgatctgtatcttccatttttgggtgtgtgtgttatgtctttgttgggggttcttgttttggttcagtacttcagggattattaacagtactttttgcaagaatatgtgtgggttgaaaattgtgtgttcatactcgaacttttgagtgttcttatttcattatgagctttttaaacattgaagaaggttttccttttcaagtaaatagttctttgttaaaatcaaattatgattgctgatttagcaatttttggtttactgttatgttcattttaaatttaactttaaaaggtagcagtaaatgttgacaaccttcatgttttaccccagcattatatggtcctgctaactgctgatgtttatgatggtattttctcttgtccatattctacttaatttcttatcagtaagagttgcacaagtactttgaattgtcatgatagtgatgtattgatctcacaggagtcgggacacagtcaaatttacaaggaaagatagtatcttcttgtgctatagtttgcattgtatcctctcttcacataatcaacacatactgcacctcaaattaagttatagtaactatctccagcttatttttctgcatgcatatcgtatgacctctaatgtccccgctgaagtgtatttttttgtgataaattacctacaggaggaaatgttgtactcttgtatgcttcgaactacaaggatgtacaaactgtcatcaatatttctgggcgcttcaatcttgagagagggatagagcatcgcttgggcagagacttcaaagagaagataaagcataacggttttattgatgttagaaatagaaaaggaaggttcaagtatcgtgtcactgaggaaagtttgatggaccgtctaacactgatactcgtggatcatgtcaaagtatcaccaataactgcaggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="66608" stop="73547"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66905" g_stop="66965" g_length="61"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="61" r_length="61" r_score="0.967"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66966" i_stop="68223" i_length="1258">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68224" g_stop="68342" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="62" r_stop="180" r_length="119" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68343" i_stop="69172" i_length="830">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69173" g_stop="69255" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="181" r_stop="263" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="69256" i_stop="69902" i_length="647">
            <donor d_prob="0.977" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="69903" g_stop="71283" g_length="1381"/>
          <reference_exon_boundary r_type="cDNA" r_start="264" r_stop="1645" r_length="1382" r_score="0.999"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="71284" i_stop="73152" i_length="1869">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="73153" g_stop="73246" g_length="94"/>
          <reference_exon_boundary r_type="cDNA" r_start="1646" r_stop="1738" r_length="93" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-U566711" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>1738</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U566711" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66905" e_stop="66965"/>
          <exon e_start="68224" e_stop="68342"/>
          <exon e_start="69173" e_stop="69255"/>
          <exon e_start="69903" e_stop="71283"/>
          <exon e_start="73153" e_stop="73246"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGAAGAGACCAAAAGCTTTGTTCAGATGGCTCCGTCCCCTTCAATCCCTAATCTGCAAGGTATTGAATCTTTACTATGCAAAGGAACATATATTGAATCTTTTAGATCATCAAGATTCAAGAAGAGTTCGTGTTATGTGATTTTTCTGGGGTTTCTAATATTTTACTGAATTTGATCGTTTTTAAATTGGATTTTCTGAGAATAGAATTTTGGGTTTTTTCCATTGTTGTATTTGCTCCGTTTCATATATATATATATATATATATATATATAAACCACTCGGTTTCAGTTCACACTATCAAGTTTTAGTATTGTATGGTGAAAATCGTAGCACCCAATTTGATTTCTATCGATGATAGTACTATGTTTCAATTCAAATGTTACCATACTGCAAAAGCTAGCTACTAATGTAGGAGAGCCCAACATTATATAAGCTCCCCATTAATCATGGTTTTGATTCTTCAGGAAAAGAATTTATTTTTATTGTATGATTGGCTGAAATTTTGCATTGTATAGTTGTCATACAACCCCAAAAAAGAAAGAGAAATATCTAGGTGGCCCTTTTTACACGGACAACGGTTGAATCAAATATGAAATGCCTAAAGAAATTTCTCTCCGCTTATGTTTAGATGACCTTATGGTAATTGGATAGGCCATTGTGACTTGATAGTTCTTATTAATGTAGGTTCCAATCATTTTTAGTCATAAGGAAGAAAATATCAACACTATATGTGAGACAAGGCAATAAAAAGGAAGTCTGTTGTCTCGAATGACAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCCAGCCCCACATTAAGCAAAGTGAAGCCCGGTATCTAAATGGAGAAGGATAGAGGGGCGGGCCCATTAGCCACCGAGTTTAGAAGGGGCTGTGGTTGGTCCAAAGGGTGGTGGGTCACAGGCGGATTTCTCGGTTATAAAAAAAAGAAGTCTTTTGCTATTTGATAATGTATTTAAGTTTCACATTAGACTATATTTAGGCATAACACGATAATGATCTAACTGTAGACCTTTTTTTAAAAAAGAAAACGTAATATTTAAGTCTTATACAGTAGTTCAATAGCAGTTAATGGATGTCAATCAATGATACTGTAGTTTTGATGACCTTTCAACTTTCTATGATGCTGTAGTATTGTGATTTGTGCATGAGTTTTTATAACAGTTAATGAATGTGAATCACGGATGCTGTAGTTTAGTTATCCTTGCAATTATCTATGTCCCATTGACTGTGTTGGATGATACCGATCTTTTGTTTTTATCACCCTCCCTTTTTTCTTTTTCTTCCATAGAAATTCGGCGTAAGTGTGTGACAGTACATAACAGTCATGGTGAGAAACTGGTGGGCGTGCTACATGAAACAAATTCCCTGGAGCTTGTAATTATCTGCCACGGTTTCAAATCATCGAAGGTTTGTCACAATAATTTGAACACGTAGGAATTACAGCTCCTAATTATGTGGCTTATTCATATAATCATTTGTTTGATTTTTGCTGCATGTTGTTCTTGGTCGATGTATAATTTTTTTTATGAGAAGTAGATATTCTTATATAAAATATGGTTTATTGCTTTTTCTATGCAGCAACATGCAAGCTTAGCTTGAATTTGGTATTAAATTCTTTTAGCAACTTCTTTTTGCTATAACTGAGTGTAGCGGAATTTGTATTGAGAGATACATTCTCTTGCTTCTATATCCATCCTCCCCTCCTCCCAACCCAACTACCATACCCCAAGAAAAAACATAGGAAGGTTTTTTTACTTTTTTTGCACTACCTGTAAGCATTTTGAATAAGAATTAAATCGCTGTTTTAAATGTCTGAGTACTCTCATCATAACTTCCATCCTTCATTGAAGAACAAATGAATTGCACCCTGAGAAATATGTGGTGCATTAGTGCATCTACTTGTCCTTGTATATGCTACTACTCCTATTGTTTGCTATATTATGTTTTACTATTGTTGAATCTAGTCTGCTGACATGCTTCCTTCCTATCTAGAAAGATATTATTATTGCTTATTTACTAAGATAAAATTCATTTAGGGATTCTTCTAGAGACTGGACATACGGGGCAAAGGCCTAAATGGACTGAATATTTTGCTTTCTACTACATTATGTGATTCAGTCCAGCAACATCCAACTCAGTGGCTGTTCAACTGTTTTTTTGTCGTTTTATTGTGCAATTTATGGACATTGATTGTGATTGACTAATAATCTTCTTTATCAATTTTGATTTAACTTCAGGATCGGATTCCCATGGTGAATCTTGCTGCTGCTTATGAGAAAGAAGGAATCAGTGCCTTCCGCTTTGACTTTGCAGGAAATGGGTATGTTCAAACACAAAAGCCAATATAGAAACCTCTAGATTAGCAAATAAATGGAAAGGGAGTGCTGCTCCCAGTGAACTTTGTTCTTCTCGTATTCTTGATCTGTGAACTTAGATTTACTCAAATGAATGGTTATTGAATTTTCTCCTTTTTGGGAAGGTGAGGAATATCTACTTGGAGTATTATAAACTTGCAAATTCTTTAGGTTATTGGGAGAACTAAATATATATGTATCTGGATTGCTGCTGCATATGCGTATGGACCAAAATTACATTTATTTAACTTCGATACTTTGTTTTGTTCTCTTCTTAACTTTTTCCTTTTCACTTGCAAGTATTAGGAGCTCCTCGCATACTTGTCTAGTGTTGTTTCATATACACTATATTGGCCTTAAAGTAGCTCTAGTTGATTCTTTTGACTTCAATGAACAATTTACTGCTTCCAGCTTGTTGAATTGGAATCTTACAGATAGGGTTCTGTCAGATGGATCTCCTCTTCAAGTTTTCTCAGGATTAAACCTGACTTACATTATGCATAGCATTATATTCTCTATATGGAGATGATAAATTTCTAATTTCTAAATATTATGAACACAGTAAAAATAATTGAAATGAACTACTGAAAACTCACTTTGTTTTTGGTGTCAGTGAAAGCGAAGGTTCCTTTCAGTATGGTAACTACCGCAGAGAAGCTGATGATCTTCGTGCCATAGTCGAGCACTTCCATAAGGAGGAGCGTTTCATAGCAGCAATAGTTGGTCATAGCAAAGGTTTAGCCTTTGAAAGCTAACTTATGTCTGATCTTGGGAAGATACGCCGTGTTTCTCTTTTCCTTTCCCCATTCCTAGTTCTCTTGCTAGGGGTGTGAATGGTGGTGTTTGGAGGATTACAGTACCACTATACTGGAACAGTACATGCAGTCTAACTGATGTTTCGACCAGTAGCAATGCCACTTTTCGCTGCTGTTTGATTCGAGTCATTGATAGATAGAAGCTTTCTTGTCATTACTGCTTATCATACTTGATGCGTTCACGTAGGAATTTTACATTTTGTCCTTGCAATTTATGTTAAATCTG-CTGAGTAAGTTATGTTTGAGTGCATAAATGAATACCCTTTCTTTGTTAGTAGGTAAGTTTTTCTCATTAGGTCATCAATATTTTCCTGGATTGGGATTCGTAAATATGTTAATAGATTCTTGATCTGTATCTTCCATTTTTGGGTGTGTGTGTTATGTCTTTGTTGGGGGTTCTTGTTTTGGTTCAGTACTTCAGGGATTATTAACAGTACTTTTTGCAAGAATATGTGTGGGTTGAAAATTGTGTGTTCATACTCGAACTTTTGAGTGTTCTTATTTCATTATGAGCTTTTTAAACATTGAAGAAGGTTTTCCTTTTCAAGTAAATAGTTCTTTGTTAAAATCAAATTATGATTGCTGATTTAGCAATTTTTGGTTTACTGTTATGTTCATTTTAAATTTAACTTTAAAAGGTAGCAGTAAATGTTGACAACCTTCATGTTTTACCCCAGCATTATATGGTCCTGCTAACTGCTGATGTTTATGATGGTATTTTCTCTTGTCCATATTCTACTTAATTTCTTATCAGTAAGAGTTGCACAAGTACTTTGAATTGTCATGATAGTGATGTATTGATCTCACAGGAGTCGGGACACAGTCAAATTTACAAGGAAAGATAGTATCTTCTTGTGCTATAGTTTGCATTGTATCCTCTCTTCACATAATCAACACATACTGCACCTCAAATTAAGTTATAGTAACTATCTCCAGCTTATTTTTCTGCATGCATATCGTATGACCTCTAATGTCCCCGCTGAAGTGTATTTTTTTGTGATAAATTACCTACAGGAGGAAATGTTGTACTCTTGTATGCTTCGAACTACAAGGATGTACAAACTGTCATCAATATTTCTGGGCGCTTCAATCTTGAGAGAGGGATAGAGCATCGCTTGGGCAGAGACTTCAAAGAGAAGATAAAGCATAACGGTTTTATTGATGTTAGAAATAGAAAAGGTATGCTTAATGGACTTCTTTTCCTTTTGTGTTCTTAGTAATCGTCATATTTCTGTCCCATTTTCTGTTGGATGTTCTTTGGTATGGATCATTGGATGTTTCACACTTCTAAAACTTCTAAAAAGCTGCTAAAAAATGACTGACCAAAAAGCGAGGGACAACGTCGCTCCAAAACATGATGCCATTTGCAACGTTATCCGTCATTTTTATTATTTTCTTAGTTTTTTGTACAAATGATGGACAATGACTCTATGTCCGTCGCTTTTTTTTTTGGGCGGATTTTTGCGCCAAATATACATATAATTAATAATTATTTATTTAATATACGTAGAGACGCCATCTATTGCTTTTAATTTAATATAATTATTTTTAAATTAGTAAATAACTACGTCATCCGTCATACGTAAAACGATGGATGACGTGGTTATTTAATTAAAAACGACGGACGATGTCTCTTCGTATATGAAATAAATAATTACTAATTATATATACATATAAATATATATGGCTCAAAAAAGCGATAGACATAGATTCACTGTCCGTCACTTTTTGTAAAAAATAAGAAAAACGACGTACAGCGTTGCAAATGGTGTCGTTTTTTGGAGCAACACCGCCTGTCACTTTTTGGTCTGTAGATTTTTAGCAGGTTTTTAGTAGTGTCAGTGGATGATAGTAAATTAAACCACTTAGGGAGGTAGATGACATTGTTAGATGACTTGGTGTGGCTGGTTTAGCTAATGGAAATCATTTCGTACAGTTGATTAGACAAGATATGGACTGTAAATGTGAGGTACAGCACAAGTTTGGTTGATGAAAATGACATAATATTATGCTTCAATAGATAAGTTCTGATGATTACAAGTCTGGAACTAAAGACTTGGTAAATATGGAATGTGGCATTCTTTTCTAAATAAACTAAAGCAGAATGTGAGACACATAAATTGAAACGGGGGAACACATCAATATAAAAATTTAAAAATGTAACAAATATGAAGGGGCAAAACCTTAGTATAATGAAGAATCACACTCCATTCACTGAGTGAGTTGCTTCGAAATAGTGTTATTATACTTCAAGCCCATGCCCAGCACATATTTCAGACGTTGCTCTGCATCAACTATCGTGAATATGTCGCTTCATTCTTATTCATAATTATTTGATCCTATATTTAAATGATACCCGATGATCTTTCGCTTCCGTTCCCAAGAAATATAAACATTCTTGCAGCAACTCCTTGCTTCTTTTTTTTTTGTATGTTAAATGAAGTTTATGCGTTCTCAATTAACTCGAGTTTTAACTTTGTAATTCACTTCAAATTTTTTGTTGTAATTTATATTTATTACTAGTCTCCACAAAATAACGTAAAAGGGAGTGTGTTTTGGTGGAAAAAAGGAAAAACTTATTTTGAGGCTTTTATTATGAAATAAAAAGAGCAACAGTAAAACCCCTTTGTCATGTCTGGTTTTGTCCAATTCGCCCCTTCCCATGCTAGTGGGTTTGCCTCAGTTCTGCCTTAGAGTCTAGGCGAATCTATGTGCAAAATTCTGGGTACATCATTGCACCAAAAGAGGCATAACAAAGATGAATTCTAGGTAAACCTTGTGCTGTTGATCCTATGCATTCTCTAATTTGTGGTTGTCTCCTCCACCGTTCTTAGGTTGAGAGTGATCAGTTCTATTTTCTATTCTGATATCCTTATCAAATATCCTAGACTTGACTGCATGTAGGACACCTGTGGGAGAAAAACAACGAGAAAGTCTAATTTAACATACCCACGAATGATATGGTAACCCAATTCCTTTTGTCTTGATAGATTTTGAGATTGCCTTTAGTTGTTAGTCCTACATACTGCCATCTCTTGCTATTTGCAGGAAGGTTCAAGTATCGTGTCACTGAGGAAAGTTTGATGGACCGTCTAACAACTGATACTCGTGGATCATGTCAAAGTATCACCAATAACTGCAG</genome_strand>
        <mrna_strand>CAGGAAGAGACCAAAAGCTTTGTTCAGATGGCTCCGTCCCCTTCAATCCCTAATCTGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCGGCGTAAGTGTGTGACAGTACATAACAGTCATGGTGAGAAACTGGTGGGCGTGCTACATGAAACAAATTCCCTGGAGCTTGTAATTATCTGCCACGGTTTCAAATCATCGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGGATTCCCATGGTGAATCTTGCTGCTGCTTATGAGAAAGAAGGAATCAGTGCCTTCCGCTTTGACTTTGCAGGAAATGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAAGCGAAGGTTCCTTTCAGTATGGTAACTACCGCAGAGAAGCTGATGATCTTCGTGCCATAGTCGAGCACTTCCATAAGGAGGAGCGTTTCATAGCAGCAATAGTTGGTCATAGCAAAGGTTTAGCCTTTGAAAGCTAACTTATGTCTGATCTTGGGAAGATACGCCGTGTTTCTCTTTTCCTTTCCCCATTCCTAGTTCTCTTGCTAGGGGTGTGAATGGTGGTGTTTGGAGGATTACAGTACCACTATACTGGAACAGTACATGCAGTCTAACTGATGTTTCGACCAGTAGCAATGCCACTTTTCGCTGCTGTTTGATTCGAGTCATTGATAGATAGAAGCTTTCTTGTCATTACTGCTTATCATACTTGATGCGTTCACGTAGGAATTTTACATTTTGTCCTTGCAATTTATGTTAAATCTGCCTGAGTAAGTTATGTTTGAGTGCATAAATGAATACCCTTTCTTTGTTAGTAGGTAAGTTTTTCTCATTAGGTCATCAATATTTTCCTGGATTGGGATTCGTAAATATGTTAATAGATTCTTGATCTGTATCTTCCATTTTTGGGTGTGTGTGTTATGTCTTTGTTGGGGGTTCTTGTTTTGGTTCAGTACTTCAGGGATTATTAACAGTACTTTTTGCAAGAATATGTGTGGGTTGAAAATTGTGTGTTCATACTCGAACTTTTGAGTGTTCTTATTTCATTATGAGCTTTTTAAACATTGAAGAAGGTTTTCCTTTTCAAGTAAATAGTTCTTTGTTAAAATCAAATTATGATTGCTGATTTAGCAATTTTTGGTTTACTGTTATGTTCATTTTAAATTTAACTTTAAAAGGTAGCAGTAAATGTTGACAACCTTCATGTTTTACCCCAGCATTATATGGTCCTGCTAACTGCTGATGTTTATGATGGTATTTTCTCTTGTCCATATTCTACTTAATTTCTTATCAGTAAGAGTTGCACAAGTACTTTGAATTGTCATGATAGTGATGTATTGATCTCACAGGAGTCGGGACACAGTCAAATTTACAAGGAAAGATAGTATCTTCTTGTGCTATAGTTTGCATTGTATCCTCTCTTCACATAATCAACACATACTGCACCTCAAATTAAGTTATAGTAACTATCTCCAGCTTATTTTTCTGCATGCATATCGTATGACCTCTAATGTCCCCGCTGAAGTGTATTTTTTTGTGATAAATTACCTACAGGAGGAAATGTTGTACTCTTGTATGCTTCGAACTACAAGGATGTACAAACTGTCATCAATATTTCTGGGCGCTTCAATCTTGAGAGAGGGATAGAGCATCGCTTGGGCAGAGACTTCAAAGAGAAGATAAAGCATAACGGTTTTATTGATGTTAGAAATAGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGTTCAAGTATCGTGTCACTGAGGAAAGTTTGATGGACCGTCTAAC-ACTGATACTCGTGGATCATGTCAAAGTATCACCAATAACTGCAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U596638" ref_strand="+" ref_description="SGN-U596638 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157339276|emb|CAO43817.1| (e_value=6e-21) unnamed; (*ATH) AT5G11910.1 (e_value=1e-20) | Symbol: None | esterase/lipase/thioesterase family protein, low similarity to cinnamoyl ester hydrolase CinI (Butyrivibrio fibrisolvens) GI:1622732; contains Interpro entry IPR000379 | chr5:3836338-3838214 REVERSE | Aliases: F14F18.80, F14F18_80; ">
      <seq>gctttgttcagatggctccgtccccttcaatccctaatctgcaagaaattcggcgtaagtgtgtgacagtacataacagtcatggtgagaaactggtgggcgtgctacatgaggcaaattccctggagcttgtaattatctgccacggtttcaaatcatcgaaggatcggattcccatggtgaatcttgctgctgcttatgagaaagaaggaatcagtgccttccgctttgactttgcaggaaatgggtatgttcaaacacaaaagccaatatagaaacctctagattagcaaataaatggaaagggagtgctgctcccagtgaactttgttcttctcgtattcttgatctgtgaacttagatttactcaaatgaatggttattgaattttctcctttttgggaaggtgaggaatatctacttggagtattataaacttgcaaattctttaggttattgggagaactaaatatatatgtatctggattgctgctgcatatgcgtatggaccaaaattacatttatttaacttcgatactttgttttgttctcttcttaactttttccttttcacttgcaagtattaggagctcctcgcatacttgtctagtgttgtttcatatacactatattggccttaaagtagctctagttg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="66621" stop="69963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="66921" g_stop="66965" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="45" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="66966" i_stop="68223" i_length="1258">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="68224" g_stop="68342" g_length="119"/>
          <reference_exon_boundary r_type="cDNA" r_start="46" r_stop="164" r_length="119" r_score="0.983"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="68343" i_stop="69172" i_length="830">
            <donor d_prob="0.828" d_score="1.00"/>
            <acceptor a_prob="1.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="69173" g_stop="69663" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="165" r_stop="655" r_length="491" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-U596638" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>655</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U596638" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="66921" e_stop="66965"/>
          <exon e_start="68224" e_stop="68342"/>
          <exon e_start="69173" e_stop="69663"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCTTTGTTCAGATGGCTCCGTCCCCTTCAATCCCTAATCTGCAAGGTATTGAATCTTTACTATGCAAAGGAACATATATTGAATCTTTTAGATCATCAAGATTCAAGAAGAGTTCGTGTTATGTGATTTTTCTGGGGTTTCTAATATTTTACTGAATTTGATCGTTTTTAAATTGGATTTTCTGAGAATAGAATTTTGGGTTTTTTCCATTGTTGTATTTGCTCCGTTTCATATATATATATATATATATATATATATAAACCACTCGGTTTCAGTTCACACTATCAAGTTTTAGTATTGTATGGTGAAAATCGTAGCACCCAATTTGATTTCTATCGATGATAGTACTATGTTTCAATTCAAATGTTACCATACTGCAAAAGCTAGCTACTAATGTAGGAGAGCCCAACATTATATAAGCTCCCCATTAATCATGGTTTTGATTCTTCAGGAAAAGAATTTATTTTTATTGTATGATTGGCTGAAATTTTGCATTGTATAGTTGTCATACAACCCCAAAAAAGAAAGAGAAATATCTAGGTGGCCCTTTTTACACGGACAACGGTTGAATCAAATATGAAATGCCTAAAGAAATTTCTCTCCGCTTATGTTTAGATGACCTTATGGTAATTGGATAGGCCATTGTGACTTGATAGTTCTTATTAATGTAGGTTCCAATCATTTTTAGTCATAAGGAAGAAAATATCAACACTATATGTGAGACAAGGCAATAAAAAGGAAGTCTGTTGTCTCGAATGACAAAAGGTGGAGGATTTGTGACTTAGGTCGCAGGTTCCAGCCCCACATTAAGCAAAGTGAAGCCCGGTATCTAAATGGAGAAGGATAGAGGGGCGGGCCCATTAGCCACCGAGTTTAGAAGGGGCTGTGGTTGGTCCAAAGGGTGGTGGGTCACAGGCGGATTTCTCGGTTATAAAAAAAAGAAGTCTTTTGCTATTTGATAATGTATTTAAGTTTCACATTAGACTATATTTAGGCATAACACGATAATGATCTAACTGTAGACCTTTTTTTAAAAAAGAAAACGTAATATTTAAGTCTTATACAGTAGTTCAATAGCAGTTAATGGATGTCAATCAATGATACTGTAGTTTTGATGACCTTTCAACTTTCTATGATGCTGTAGTATTGTGATTTGTGCATGAGTTTTTATAACAGTTAATGAATGTGAATCACGGATGCTGTAGTTTAGTTATCCTTGCAATTATCTATGTCCCATTGACTGTGTTGGATGATACCGATCTTTTGTTTTTATCACCCTCCCTTTTTTCTTTTTCTTCCATAGAAATTCGGCGTAAGTGTGTGACAGTACATAACAGTCATGGTGAGAAACTGGTGGGCGTGCTACATGAAACAAATTCCCTGGAGCTTGTAATTATCTGCCACGGTTTCAAATCATCGAAGGTTTGTCACAATAATTTGAACACGTAGGAATTACAGCTCCTAATTATGTGGCTTATTCATATAATCATTTGTTTGATTTTTGCTGCATGTTGTTCTTGGTCGATGTATAATTTTTTTTATGAGAAGTAGATATTCTTATATAAAATATGGTTTATTGCTTTTTCTATGCAGCAACATGCAAGCTTAGCTTGAATTTGGTATTAAATTCTTTTAGCAACTTCTTTTTGCTATAACTGAGTGTAGCGGAATTTGTATTGAGAGATACATTCTCTTGCTTCTATATCCATCCTCCCCTCCTCCCAACCCAACTACCATACCCCAAGAAAAAACATAGGAAGGTTTTTTTACTTTTTTTGCACTACCTGTAAGCATTTTGAATAAGAATTAAATCGCTGTTTTAAATGTCTGAGTACTCTCATCATAACTTCCATCCTTCATTGAAGAACAAATGAATTGCACCCTGAGAAATATGTGGTGCATTAGTGCATCTACTTGTCCTTGTATATGCTACTACTCCTATTGTTTGCTATATTATGTTTTACTATTGTTGAATCTAGTCTGCTGACATGCTTCCTTCCTATCTAGAAAGATATTATTATTGCTTATTTACTAAGATAAAATTCATTTAGGGATTCTTCTAGAGACTGGACATACGGGGCAAAGGCCTAAATGGACTGAATATTTTGCTTTCTACTACATTATGTGATTCAGTCCAGCAACATCCAACTCAGTGGCTGTTCAACTGTTTTTTTGTCGTTTTATTGTGCAATTTATGGACATTGATTGTGATTGACTAATAATCTTCTTTATCAATTTTGATTTAACTTCAGGATCGGATTCCCATGGTGAATCTTGCTGCTGCTTATGAGAAAGAAGGAATCAGTGCCTTCCGCTTTGACTTTGCAGGAAATGGGTATGTTCAAACACAAAAGCCAATATAGAAACCTCTAGATTAGCAAATAAATGGAAAGGGAGTGCTGCTCCCAGTGAACTTTGTTCTTCTCGTATTCTTGATCTGTGAACTTAGATTTACTCAAATGAATGGTTATTGAATTTTCTCCTTTTTGGGAAGGTGAGGAATATCTACTTGGAGTATTATAAACTTGCAAATTCTTTAGGTTATTGGGAGAACTAAATATATATGTATCTGGATTGCTGCTGCATATGCGTATGGACCAAAATTACATTTATTTAACTTCGATACTTTGTTTTGTTCTCTTCTTAACTTTTTCCTTTTCACTTGCAAGTATTAGGAGCTCCTCGCATACTTGTCTAGTGTTGTTTCATATACACTATATTGGCCTTAAAGTAGCTCTAGTTG</genome_strand>
        <mrna_strand>GCTTTGTTCAGATGGCTCCGTCCCCTTCAATCCCTAATCTGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTCGGCGTAAGTGTGTGACAGTACATAACAGTCATGGTGAGAAACTGGTGGGCGTGCTACATGAGGCAAATTCCCTGGAGCTTGTAATTATCTGCCACGGTTTCAAATCATCGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGGATTCCCATGGTGAATCTTGCTGCTGCTTATGAGAAAGAAGGAATCAGTGCCTTCCGCTTTGACTTTGCAGGAAATGGGTATGTTCAAACACAAAAGCCAATATAGAAACCTCTAGATTAGCAAATAAATGGAAAGGGAGTGCTGCTCCCAGTGAACTTTGTTCTTCTCGTATTCTTGATCTGTGAACTTAGATTTACTCAAATGAATGGTTATTGAATTTTCTCCTTTTTGGGAAGGTGAGGAATATCTACTTGGAGTATTATAAACTTGCAAATTCTTTAGGTTATTGGGAGAACTAAATATATATGTATCTGGATTGCTGCTGCATATGCGTATGGACCAAAATTACATTTATTTAACTTCGATACTTTGTTTTGTTCTCTTCTTAACTTTTTCCTTTTCACTTGCAAGTATTAGGAGCTCCTCGCATACTTGTCTAGTGTTGTTTCATATACACTATATTGGCCTTAAAGTAGCTCTAGTTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U580292" ref_strand="+" ref_description="SGN-U580292 Tomato 200607#2 [34 ESTs aligned] (*GB) gi|157339277|emb|CAO43818.1| (e_value=0) unnamed; (*ATH) AT4G33030.1 (e_value=0) | Symbol: None | UDP-sulfoquinovose synthase / sulfite:UDP-glucose sulfotransferase / sulfolipid biosynthesis protein (SQD1), identical to gi:2736155 | chr4:15935432-15937810 FORWARD | Aliases: F4I10.6; (*SWP) sp|Q84KI6|SQD1_SPIOL (e_value=0) UDP-sulfoquinovose synthase, chloroplastic OS=Spinacia oleracea GN=SQD1; ">
      <seq>cagataaatgaaaacctttctcactctcttgtaaggattttatgtctaacaagcatcaccaggtttaagaaaattggtaggctcatatcgaggcggctatcatggcacatttactttctactacatgttctttagatgtctcttccagcaaaaagctgcatttcaagtcaattaaccaatgctctactcctaatccaacatgttttaatatgggaatttctttctcacccttgaagctaagtttgcaaagcaaaaggtctgcaaaatatgtgatcagagcttcagctgtttccatgagccaagaagccagaacacagaatgactctggttctcaacagaccactgatggagcatccactaggaagaaggtcatggtcattggtggtgatggctattgtggctgggctactgctctccacctatccaacaagggatatgaagttgccattgttgacaaccttatccgtcgattatttgacgaccagcttggtctagattctctaacacccatctcatctattcataaccgcataaggcgttggaaatctctcacaggaaaagatattcaactgtttgttggtgatatatgtgagtttgagttcttggcagaagccttcaaatcctttgaacctgatgctgtagtccattttggagagcagaggtctgccccttattctatgattgataggtcaagagctatttatacccaacataataatgtgatagggacacttaatgtactatttgccataaaggagtttagggaagagtgtcatttggtcaaactcgggaccatgggggaatatggaacccctaatatagatattgaagaaggttatataactattactcataacggaagaacagatactcttccttatcccaaacaagcaagctccttctatcatttgagtaaagtccatgattcccacaacatagccctcacttgcaaggcgtggggaatcagagctaccgacctgaatcagggagttgtatatggggtgaggactgatgaaactgcaatacatgaggatctggttaacagacttgattatgatggtgtatttggaactgcactaaatcgtttctgtgttcaggctgctgttggacatccactaacggtgtatggtaaaggagggcagaccaggggatatttggatatcagagatacagttcaatgtgttgaaattgcaattgccaatccagcaaaaccaggagagttccgggttttcaaccaattcacagagcagttttcagtaaatgagcttgcagcccttgtcaccaaggcagggcaaaaacttggccttgaggtgaaggccatatcagtgcccaatccaagagtagaagcagaggaacactactacaatgccaaacatactaaacttattgagctgggactacaacctcaccttctttctgattctcttctcgactctctattgaactttgctgttcaatataaggatcgtgtcgacacaaagcagataatgcctagtgtttcctggaaaaaaattggcgcgaagccaaagactgttgcagcataaatcacttagacaagctatagagacttgagactgggagttcttgtatgtcatttttatataggagctatagtattttacaatgccttgcacaattttatgttgtaactttgggaagtatttgttgtattccgaagcttgtgaaggttgtggatgtagtttttgtttgagaaaatactcgaggtagtcgtgacctgtctcaagcctgaaacttgtgtgatttacttgtcaatttagttttggctacacagaagtgttcccggatatcttcctcattggacaga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="78787" stop="73911"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78487" g_stop="78426" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="62" r_length="62" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78425" i_stop="76811" i_length="1615">
            <donor d_prob="0.983" d_score="1.00"/>
            <acceptor a_prob="0.968" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76810" g_stop="75731" g_length="1080"/>
          <reference_exon_boundary r_type="cDNA" r_start="63" r_stop="1142" r_length="1080" r_score="0.999"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="75730" i_stop="74894" i_length="837">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74893" g_stop="74211" g_length="683"/>
          <reference_exon_boundary r_type="cDNA" r_start="1143" r_stop="1825" r_length="683" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-U580292" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U580292" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78487" e_stop="78426"/>
          <exon e_start="76810" e_stop="75731"/>
          <exon e_start="74893" e_stop="74211"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGATAAATGAAAACCTTTCTCACTCTCTTGTAAGGATTTTATGTCTAACAAGCATCACCAGGTGACCCTTTTAGCTTCTAGAATTTGCTTTTTAAAAAATTTTAATTACAAAAAATTAATTCTTTACAATCTTAATTCTACTGCTTGGTTCAGTTTTTAATGTTCCTTTTTTTTTGTTGCAATATTTAGTAAAAAGTGTTTGGTTTATGTAGTCAGTTGACTATTTTCTGTTCTAAGTTTGTTCTTTATGGTTTTGACTAAATATTATCAATATGTGTTTTGTTGTTCTGGAGTAGACTAACTGGGGGAGAGAAATTTATGTCTGTATTGAAAATGTCTTAGGTTTTTGAGCATTTCGTAACATGAAATCCATTGTACTGCCATTTTTTGGGCTTTGTTCTAAGTGAAACTATTCCATTGTTACTGACCTTATCCTAATTTCAACTGTTGAAAGAATGTTGTTCAACCATCTCTTTGGAACACTGGTTATGCTATAATGTTGTAAAAACAACTCATGTTTACGGTCTATTTGCACTAGGAAGTTTATTACATCAAGATGCGTTGCTTCGTCCTAATTGCACATTCATGTTGAGGATGGAGAAAGTTGTTACTAGTAAAATTATCAATTAGTAGTGGAAGTGTAGAACAAATATTTGTGTTAGTTATCCTTTCAATTAAGCAACTTTTACCTTATTCAGTAGTGATCCAGACTGATATTTCATCAGCCCAAGTTTCCAGATGACATTCGCTGTTTGCATCTCTTGCGATGCCTGCAATAGGCAAGGACTAGGATGGAGATGATCTCCCATCTGAAGAGATATGGTTATTGTTGCTTTGAAATGTGTAGTGGATAAATCAACTTTTTTGTTTGCTACTATCAATCTTACAATTATGTGACCACATTTCCAGAACCATTTAAACCTTCATATTTTGCGCATACTGGCAGGAAAGCCCTTTCAGATCTTCCGATCCACCTGCTTCTCATGCCAATTGGACACTTTGCCCATCTGTATCATTCCTTCCAACAATACTTACAATTTGATTGTGGTGTATCCTGTTTCAGCTTTGATTCTGTGAAAAAAACACCTTCCCCAAGGATGATTATATGTTCATTGCCAAGCATATTTGCTTCGCCAAAAGTTTGTGTTCTCGTGATTTTTTTACTGCCCCAAGCATTTTGGTTCAGTGATAAGGATACAGCGGTGTGTGTGAATTTGGCGCACATACCACTGGTTCGAAGTAAGTGGGAGAAGGGTGGGTCCATATTCCCTCCAGTTTCAAATGCACAGTTAGGGTTTGGCCTAGCTAACTCACAGGCAATCTATCAATCATCAAAAAATAATTTTATTCTTAAACTTTGGCCAGTTCTTTTTAGAAGAATGTGGTAAAGTGTATTAGCCATCATATCCTTGATTCTATTTTGTGATTGAAATTTATATTGATTAACAGAAGGAGAAATTTAAAATCTAGCAACAGAATAATTTTTTACTCTAAGAGGACACTTGCTGTTTATCTTTATTAGTTTTTGGTTTTCAGTTTCCTGACACTTGCTAATTTAGTTTTTATTTTTTTTGTATTGGTTTTCAGTTTTCTTGTAACTAGCTTTCCTATTTGTATTTCCTAGATAGAATAAGAGTCTGCATTCTGCTCTGATTCATACTTTCTTAGTTTTGCAGGTTTAAGAAAATTGGTAGGCTCATATCGAGGCGGCTATCATGGCACATTTACTTTCTACTACATGTTCTTTAGATGTCTCTTCCAGCAAAAAGCTGCATTTCAAGTCAATTAACCAATGCTCTACTCCTAATCCAACATGTTTTAATATGGGAATTTCTTTCTCACCCTTGAAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAGGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGATATTCAACTGTTTGTTGGTGATATATGTGAGTTTGAGTTCTTGGCAGAAGCCTTCAAATCCTTTGAACCTGATGCTGTAGTCCATTTTGGAGAGCAGAGGTCTGCCCCTTATTCTATGATTGATAGGTCAAGAGCTATTTATACCCAACATAATAATGTGATAGGGACACTTAATGTACTATTTGCCATAAAGGAGTTTAGGGAAGAGTGTCATTTGGTCAAACTCGGGACCATGGGGGAATATGGAACCCCTAATATAGATATTGAAGAAGGTTATATAACTATTACTCATAACGGAAGAACAGATACTCTTCCTTATCCCAAACAAGCAAGCTCCTTCTATCATTTGAGTAAAGTCCATGATTCCCACAACATAGCCTTCACTTGCAAGGCGTGGGGAATCAGAGCTACCGACCTGAATCAGGGAGTTGTATATGGGGTGAGGACTGATGAAACTGCAATACATGAGGATCTGGTTAACAGACTTGATTATGATGGTGTATTTGGAACTGCACTAAATCGTTTCTGTGTTCAGGCTGCTGTTGGACATCCACTAACGGTGTATGGTAAAGGAGGGCAGGTACGAATTTCCTCTTGTTCCATGTGGTACTGCATTTTAATGAATAAACAACCAATTCTATTGAAGAAATCTTGAGCTCTATCCATAGGTCCTCAAGTGAAACTTCTTTCCTAGCTTTTATACAGTGCATAAGATATACATTGAGTCCATCTCTGACGTTTTTGTTATTTGTTCTTGCGAACGAACATATCAAAAAAATTGTTCTTGGGACCATAAACAGGGTGAACTTCAATAATCAGTGACATGATCCATAACTGCGCTCATCAAAAGAGAGTTAAAATGAACTCATTCTTCCATTGCCATGACTGTAACCATTCAATGCGGAGACAGAAATCGGAAAAAACTTATATTTTTATCAGGAAGGGACTGAGAAACCTTCTATATAGGAAATGCTAAAATCACTGGACTGTAGACGTAATCTGCATACATTCTCCCCAACTGCTGAATATAAGCTGATATTTCTTCCCTTTATGTGTTTGTAATTCATTGCACTAGAATTAGTAACACCCACGAAAGTAAATTTTTAGTACTATTGGAGATTGTTTCTGGACATGGAAGGTATTGAGATTTGGATGATTTCACCTCATATAGTGCATCTAACACGATTGTCCAGAAAGCAAGATAAGTGGTGAGATGGGGGCCAGTACGGTCTTTAGAAAATAATAAAAGGTGAATTTGAATGGCTTCCTTCCTTTGGTGGGGCTTGATTTTTGTTCACTCCCGCTTACTGTTAATATTAAGTTATGAGCACCCTGACCAACAATCCCTTGACAATAAGTCTTTTTTCATTTAACAGCATTCTTTGCTTTTCTAACGTGTTTTTTTTGTGTTGTACAGACCAGGGGATATTTGGATATCAGAGATACAGTTCAATGTGTTGAAATTGCAATTGCCAATCCAGCAAAACCAGGAGAGTTCCGGGTTTTCAACCAATTCACAGAGCAGTTTTCAGTAAATGAGCTTGCAGCCCTTGTCACCAAGGCAGGGCAAAAACTTGGCCTTGAGGTGAAGGCCATATCAGTGCCCAATCCAAGAGTAGAAGCAGAGGAACACTACTACAATGCCAAACATACTAAACTTATTGAGCTGGGACTACAACCTCACCTTCTTTCTGATTCTCTTCTCGACTCTCTATTGAACTTTGCTGTTCAATATAAGGATCGTGTCGACACAAAGCAGATAATGCCTAGTGTTTCCTGGAAAAAAATTGGCGCGAAGCCAAAGACTGTTGCAGCATAAATCACTTAGACAAGCTATAGAGACTTGAGACTGGGAGTTCTTGTATGTCATTTTTATATAGGAGCTATAGTATTTTACAATGCCTTGCACAATTTTATGTTGTAACTTTGGGAAGTATTTGTTGTATTCCGAAGCTTGTGAAGGTTGTGGATGTAGTTTTTGTTTGAGAAAATACTCGAGGTAGTCGTGACCTGTCTCAAGCCTGAAACTTGTGTGATTTACTTGTCAATTTAGTTTTGGCTACACAGAAGTGTTCCCGGATATCTTCCTCATTGGACAGA</genome_strand>
        <mrna_strand>CAGATAAATGAAAACCTTTCTCACTCTCTTGTAAGGATTTTATGTCTAACAAGCATCACCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAAGAAAATTGGTAGGCTCATATCGAGGCGGCTATCATGGCACATTTACTTTCTACTACATGTTCTTTAGATGTCTCTTCCAGCAAAAAGCTGCATTTCAAGTCAATTAACCAATGCTCTACTCCTAATCCAACATGTTTTAATATGGGAATTTCTTTCTCACCCTTGAAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAGGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGATATTCAACTGTTTGTTGGTGATATATGTGAGTTTGAGTTCTTGGCAGAAGCCTTCAAATCCTTTGAACCTGATGCTGTAGTCCATTTTGGAGAGCAGAGGTCTGCCCCTTATTCTATGATTGATAGGTCAAGAGCTATTTATACCCAACATAATAATGTGATAGGGACACTTAATGTACTATTTGCCATAAAGGAGTTTAGGGAAGAGTGTCATTTGGTCAAACTCGGGACCATGGGGGAATATGGAACCCCTAATATAGATATTGAAGAAGGTTATATAACTATTACTCATAACGGAAGAACAGATACTCTTCCTTATCCCAAACAAGCAAGCTCCTTCTATCATTTGAGTAAAGTCCATGATTCCCACAACATAGCCCTCACTTGCAAGGCGTGGGGAATCAGAGCTACCGACCTGAATCAGGGAGTTGTATATGGGGTGAGGACTGATGAAACTGCAATACATGAGGATCTGGTTAACAGACTTGATTATGATGGTGTATTTGGAACTGCACTAAATCGTTTCTGTGTTCAGGCTGCTGTTGGACATCCACTAACGGTGTATGGTAAAGGAGGGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGGGGATATTTGGATATCAGAGATACAGTTCAATGTGTTGAAATTGCAATTGCCAATCCAGCAAAACCAGGAGAGTTCCGGGTTTTCAACCAATTCACAGAGCAGTTTTCAGTAAATGAGCTTGCAGCCCTTGTCACCAAGGCAGGGCAAAAACTTGGCCTTGAGGTGAAGGCCATATCAGTGCCCAATCCAAGAGTAGAAGCAGAGGAACACTACTACAATGCCAAACATACTAAACTTATTGAGCTGGGACTACAACCTCACCTTCTTTCTGATTCTCTTCTCGACTCTCTATTGAACTTTGCTGTTCAATATAAGGATCGTGTCGACACAAAGCAGATAATGCCTAGTGTTTCCTGGAAAAAAATTGGCGCGAAGCCAAAGACTGTTGCAGCATAAATCACTTAGACAAGCTATAGAGACTTGAGACTGGGAGTTCTTGTATGTCATTTTTATATAGGAGCTATAGTATTTTACAATGCCTTGCACAATTTTATGTTGTAACTTTGGGAAGTATTTGTTGTATTCCGAAGCTTGTGAAGGTTGTGGATGTAGTTTTTGTTTGAGAAAATACTCGAGGTAGTCGTGACCTGTCTCAAGCCTGAAACTTGTGTGATTTACTTGTCAATTTAGTTTTGGCTACACAGAAGTGTTCCCGGATATCTTCCTCATTGGACAGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U586538" ref_strand="+" ref_description="SGN-U586538 Tomato 200607#2 [8 ESTs aligned] (*GB) gi|147777887|emb|CAN77974.1| (e_value=2e-37) hypothetical; ">
      <seq>cagagtttatgatacgccgaaagcgtaatagaccaattgattccaaatataaaattccttaaagaaggaaggagcaaatgatcaatatggtcatgataatgaggcaagtgctataaaggagcacattgacataacacttcataaaatcttgaaaaaggttcaggtacctgaaataatgaaaaaaattgaagagatctcgataagttatgtcttgttggaatcgatatcaaataaccgtcgacggtatctttgatataaggtagcgctcaatgaaataaaattgtgatgaggatcttgaattcaaatctgtcatatagtgtggacagattaatggttgaccaagtaaaatgcacaattcaagtatattttgtttcacttagaaaagtgacattttggactggtagtccataaatcaaggtataatgtcagtggggtacaaataaattattatgcaataatataaccgtaagatatcaaatacggtttgtgtcttggggcataaaggtttatcgcaaaaatcctgacattattggagatgttttctcctttggtggatgcaatgaggtttgttttgatctggcaacatatgaaaagcttgaatgcatgtaatgaataattgtaatgtctagctagacaatgaaggttatatgaaaatccttgaaacaatcgaggtgtctgaagcatacaagagtttgaaagaaactttttcaataaagcttcaagaatccttatatggattgaaatagtcaaggaagaaaagggtacaaaagaatgatcctaattgtccttgtatttttatgaaaaggtcttggtaagacaaaattttgtcttgacctacagattgttaatttgacaaataaaatatttgtctaacagtgcacatacactgaaaaattttgatgcaattttatgtggatatatcgcattcattgagtaccccaatgattatgagatcacttgtcataaatgatgattcagtttgatctcaaaagaaggatgatgagtttcttggtgatgaaactctatcttggtgcaatcagggcactagtgcatcttactaacaatactagaccagatatctgttttgcagtaagtctactggcaagattcagttcctccccaacaaaaagacattggaatggcgttaaacacatacttcgatatcttcgagggaccatggacatgggtttattctattccaatgaatccaaatcagaactgattggttacgcagatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="81010" stop="79178"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80710" g_stop="79478" g_length="1233"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="1237" r_length="1237" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-U586538" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>1233</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U586538" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80710" e_stop="79478"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAGAGTCTATGATACGCCAAAAGCATAATAGACCAATTGATTCCAAATATAAAATTTCTTAAAGAAGAAAGGAGCAAATGATCAATATGGTCATGATAATGAGGCAAGTGCTATAAAAGCGCACATTGACATAACACTTCATAAAATCTTGAAAAAGGTTCAGGTACCTAAAATAAT--AAAAAA-TGAAAAGATCTCGATAAGTTATGTCTTGTTGGAATCGATATCAAATAACCGTCGACGGTATCTTTGATATGAGGTAGCGCTCAATGATAT-AAATTGTGACGAGGATCTTGAATTCAAATTTGTCATATAGTGTGGACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAATCGTAAGATATCAAATACGATTTGTGCCTTGGGGCATAAAGG-TTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTCGTTTTGATCTGGCAACATATGAAAAACTTGAATACATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGACAGAAACTTTTTTAATATATAAAGCCTCAATAATCCTTATATGGATTGCAATAGTCAAGAAAGAAAAGGGTACAAAAGAATGACCCTAATTGTCTTTGTA-TTTTATGAAAATGTCTTGGTAAGACAGAATTTTCTCTTGACCTACAGATTGATAATTTGACAAATGAAATGTTTGTCTAACAGTGCACATACACTGAAAAGTTTTGATGCAATTTTATATGGATAAATCGCATTCATTGAGTACCCCAATGATTATGAGATCAC-T-TCATAAATGATGATTCAGTTTGATCTCAAACGAAGGATGATGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTTGACTAGATATTTGTTTTGCAGTAAATTTACTGGCAAGATTCAGTTTCTCCCCGATAAAAGGACATTGAAATGGTGTTGAACACATGATTGAATATCCTCGAAGGACCGTAGTTATGGGCTTATTCTATCCCGAAGAATCCAAGACAAAATTGATTGGTTACGCAGATG</genome_strand>
        <mrna_strand>CAGAGTTTATGATACGCCGAAAGCGTAATAGACCAATTGATTCCAAATATAAAATTCCTTAAAGAAGGAAGGAGCAAATGATCAATATGGTCATGATAATGAGGCAAGTGCTATAAAGGAGCACATTGACATAACACTTCATAAAATCTTGAAAAAGGTTCAGGTACCTGAAATAATGAAAAAAATTGAAGAGATCTCGATAAGTTATGTCTTGTTGGAATCGATATCAAATAACCGTCGACGGTATCTTTGATATAAGGTAGCGCTCAATGAAATAAAATTGTGATGAGGATCTTGAATTCAAATCTGTCATATAGTGTGGACAGATTAATGGTTGACCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCAATAATATAACCGTAAGATATCAAATACGGTTTGTGTCTTGGGGCATAAAGGTTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTTGTTTTGATCTGGCAACATATGAAAAGCTTGAATGCATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATACAAGAGTTTGAAAGAAAC-TTTTT--CA-ATAAAGCTTCAAGAATCCTTATATGGATTGAAATAGTCAAGGAAGAAAAGGGTACAAAAGAATGATCCTAATTGTCCTTGTATTTTTATGAAAAGGTCTTGGTAAGACAAAATTTTGTCTTGACCTACAGATTGTTAATTTGACAAATAAAATATTTGTCTAACAGTGCACATACACTGAAAAATTTTGATGCAATTTTATGTGGATATATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTGTCATAAATGATGATTCAGTTTGATCTCAAAAGAAGGATGATGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATACTAGACCAGATATCTGTTTTGCAGTAAGTCTACTGGCAAGATTCAGTTCCTCCCCAACAAAAAGACATTGGAATGGCGTTAAACACATACTTCGATATCTTCGAGGGACCATGGACATGGGTTTATTCTATTCCAATGAATCCAAATCAGAACTGATTGGTTACGCAGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U599792" ref_strand="+" ref_description="SGN-U599792 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>tattgtaanccctactatatgcttaattgtatgtttgcntgantatgattatgtgattgtgataagataaacatgatgaaaatattgaatcccaaatcttgaaaggaaactttaatatacnttattaatgatgatgccttggtata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="109280" stop="108534"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="108980" g_stop="108834" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="146" r_length="146" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-U599792" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>147</cumulative_length_of_scored_exons>
        <coverage percentage="1.007" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U599792" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="108980" e_stop="108834"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TATTGTAAACCCTACTATATGCTTAATTGTATGTTTGCATGAATATGATTATGTAATTGTGATAAGATAAGCATGATCAAAAATATTGAATCCCAAATCTTGAAAAGAAACTTTAATATACATTATTAATGATGATGTCTTGGTATA</genome_strand>
        <mrna_strand>TATTGTAANCCCTACTATATGCTTAATTGTATGTTTGCNTGANTATGATTATGTGATTGTGATAAGATAAACATGATGAAAA-TATTGAATCCCAAATCTTGAAAGGAAACTTTAATATACNTTATTAATGATGATGCCTTGGTATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U576386" ref_strand="+" ref_description="SGN-U576386 Tomato 200607#2 [8 ESTs aligned] ">
      <seq>gcttcacttcatcactcacactccattgattcacattcactcactgaaatacactctcccatagaaaatatcttcaattttcattaaacaagttcaagatttttgcctacgattctttgctacacagacaaggtaagagggttttggtaagtcttttgaacagctaaccatatatatatagccttataactgaaaaggggtatgtattaattttcaaaaaaaaaaaaattatgttgtggcgcctccttgcatatgccaacaatgtctagagttgcagaaaagtaaaagggttagtcagaacagaatttcaattaaagattacatctttttacaagttgtgatcttacaattcttggttttttttttcttttttgagaagaatttaggaaagggtctttttcagatctctttttctagcatttttcttatggcagattcaagaaagtacatttctagtg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="112091" stop="113145"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112390" g_stop="112845" g_length="456"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="458" r_length="458" r_score="0.980"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-U576386" ref_strand="+">
        <total_alignment_score>0.980</total_alignment_score>
        <cumulative_length_of_scored_exons>456</cumulative_length_of_scored_exons>
        <coverage percentage="0.996" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U576386" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112390" e_stop="112845"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCTTCACTTCATCACTCACACTCCATTGATTCACATTCACTCACTGAAATACACTCTCCCATAGAAAATATCTTCAATTTTCATTAAACAAGTTCAAGATTTTTGCCTACGATTCTTTGCTACACAGACAAGGTAAGAGGGTTTTGGTAAGTCTTTTGAACAGCTAACCATATATATATAGCCTTATAACTGAAAAGGGGTATGTATTAATTTTC-AAAAAAAAAATA-TATGTTGTGGCGCCTCCTTGCATATGCCAACAATGTCTAGAGTTGCAGAAAAGTAAAAGGGTTTGTCAGAACAGAATTTCAATTAAAGATTACATCTTTTTACAAGTTGTGATCTTACAATTCTTGTTTTTTTTTTTCTTTTTTGAGAAGAATTTAGGGAAGGGTCTTTTTCAGATCTCTTTTTCTAGCATTTTTCTTATGGCAGATTCAAGAAAGTACATTTCTAGTG</genome_strand>
        <mrna_strand>GCTTCACTTCATCACTCACACTCCATTGATTCACATTCACTCACTGAAATACACTCTCCCATAGAAAATATCTTCAATTTTCATTAAACAAGTTCAAGATTTTTGCCTACGATTCTTTGCTACACAGACAAGGTAAGAGGGTTTTGGTAAGTCTTTTGAACAGCTAACCATATATATATAGCCTTATAACTGAAAAGGGGTATGTATTAATTTTCAAAAAAAAAAAAATTATGTTGTGGCGCCTCCTTGCATATGCCAACAATGTCTAGAGTTGCAGAAAAGTAAAAGGGTTAGTCAGAACAGAATTTCAATTAAAGATTACATCTTTTTACAAGTTGTGATCTTACAATTCTTGGTTTTTTTTTTCTTTTTTGAGAAGAATTTAGGAAAGGGTCTTTTTCAGATCTCTTTTTCTAGCATTTTTCTTATGGCAGATTCAAGAAAGTACATTTCTAGTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594830" ref_strand="+" ref_description="SGN-U594830 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|30350279|gb|AAP23035.1| (e_value=2e-63) sphingolipid delta-8 desaturase [Primula vialii]; (*ATH) AT3G61580.1 (e_value=3e-45)  Symbol: None | delta-8 sphingolipid desaturase (SLD1), identical to delta-8 sphingolipid desaturase GI:3819710 from (Arabidopsis thaliana); contains Pfam profile PF00487: Fatty acid desaturase; contains Pfam profile PF00173: Heme/Steroid binding dom... ; (*SWP) sp|Q6DDK2|FADS2_XENLA (e_value=1e-12) Fatty acid desaturase 2 OS=Xenopus laevis GN=fads2; ">
      <seq>ttcatcactcacactccattgattcacattcactcactgaaatacactctcccatagaaaatatcttcaattttcattaaacaagttcaagatttttgcctacgattctttgctacacagacaagaatttagggaagggtctttttcagatctctttttctagcatttttcttatggcagattcaagaaagtacatttctagtgaggaactgaagaatcacaacaaaccaggggatctgtggatatccattcagggtaaggtgtatgatgtatcagattgggtgaaggaacatcctggtggtgatttcccactgttaaatcttgctggacaggatgttactgatgcatttgttgcatttcatcctgctactgcttggaagtatcttgacaagttctttaaggggttttacctcaaggattattctgtttctgagagtgggtggattggtcatgattcagggcattatcaggtgatgagcactcgcggattcaacagatttgctcaagtccttactgggaattgccttgctggaatcagcattgcttggtggaagtggaaccacaatgctcaccacattgcctgcaacagtcttgaatatggccctgatcttcaacacgtgccattctttgtggtatcttccaagtttttcgactcactcacttcttatttttacgataggaagatgaattttgattcttttactagattcttggttagtcatcaacattggacattttatcctgttat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="112097" stop="113884"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112397" g_stop="112521" g_length="125"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="125" r_length="125" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112522" i_stop="112766" i_length="245">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112767" g_stop="113075" g_length="309"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="434" r_length="309" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="113076" i_stop="113270" i_length="195">
            <donor d_prob="0.078" d_score="1.00"/>
            <acceptor a_prob="0.979" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="113271" g_stop="113584" g_length="314"/>
          <reference_exon_boundary r_type="cDNA" r_start="435" r_stop="748" r_length="314" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-U594830" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>748</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U594830" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112397" e_stop="112521"/>
          <exon e_start="112767" e_stop="113075"/>
          <exon e_start="113271" e_stop="113584"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCATCACTCACACTCCATTGATTCACATTCACTCACTGAAATACACTCTCCCATAGAAAATATCTTCAATTTTCATTAAACAAGTTCAAGATTTTTGCCTACGATTCTTTGCTACACAGACAAGGTAAGAGGGTTTTGGTAAGTCTTTTGAACAGCTAACCATATATATATAGCCTTATAACTGAAAAGGGGTATGTATTAATTTTCAAAAAAAAAATATATGTTGTGGCGCCTCCTTGCATATGCCAACAATGTCTAGAGTTGCAGAAAAGTAAAAGGGTTTGTCAGAACAGAATTTCAATTAAAGATTACATCTTTTTACAAGTTGTGATCTTACAATTCTTGTTTTTTTTTTTCTTTTTTGAGAAGAATTTAGGGAAGGGTCTTTTTCAGATCTCTTTTTCTAGCATTTTTCTTATGGCAGATTCAAGAAAGTACATTTCTAGTGAGGAACTGAAGAATCACAACAAACCAGGGGATCTGTGGATATCCATTCAGGGTAAGGTGTATGATGTATCAGATTGGGTGAAGGAACATCCTGGTGGTGATTTCCCACTGTTAAATCTTGCTGGACAGGATGTTACTGATGCATTTGTTGCATTTCATCCTGCTACTGCTTGGAAGTATCTTGACAAGTTCTTTAAGGGGTTTTACCTCAAGGATTATTCTGTTTCTGAGGTATCTACGGATTATAGAAGGCTTGTGTCTGAGTTCACTAAAATGGGGTTGTTTGAAAAGAAAGGCCATGTTTGTTTATTCACCATGTTCTTAATGACAATGTTGTTTTCCTTAAGTGTTTATGGAATCTTGTATTGTCATGGTGTGTTGGCACATTTGATAAGTGGTGCCTTGATGGGGTGTCTTTGGATTCAGAGTGGGTGGATTGGTCATGATTCAGGGCATTATCAGGTGATGAGCACTCGCGGATTCAACAGATTTGCTCAAGTCCTTACTGGGAATTGCCTTGCTGGAATCAGCATTGCTTGGTGGAAGTGGAACCACAATGCTCACCACATTGCCTGCAACAGTCTTGAATATGACCCTGATCTTCAACACATGCCATTCTTTGTGGTATCTTCCAAGTTTTTCGACTCACTCACTTCTTATTTTTACGATAGGAAGATGAATTTTGATTCTTTTACTAGATTCTTGGTTAGTCATCAACATTGGACATTTTATCCTGTTAT</genome_strand>
        <mrna_strand>TTCATCACTCACACTCCATTGATTCACATTCACTCACTGAAATACACTCTCCCATAGAAAATATCTTCAATTTTCATTAAACAAGTTCAAGATTTTTGCCTACGATTCTTTGCTACACAGACAAG.....................................................................................................................................................................................................................................................AATTTAGGGAAGGGTCTTTTTCAGATCTCTTTTTCTAGCATTTTTCTTATGGCAGATTCAAGAAAGTACATTTCTAGTGAGGAACTGAAGAATCACAACAAACCAGGGGATCTGTGGATATCCATTCAGGGTAAGGTGTATGATGTATCAGATTGGGTGAAGGAACATCCTGGTGGTGATTTCCCACTGTTAAATCTTGCTGGACAGGATGTTACTGATGCATTTGTTGCATTTCATCCTGCTACTGCTTGGAAGTATCTTGACAAGTTCTTTAAGGGGTTTTACCTCAAGGATTATTCTGTTTCTGAG...................................................................................................................................................................................................AGTGGGTGGATTGGTCATGATTCAGGGCATTATCAGGTGATGAGCACTCGCGGATTCAACAGATTTGCTCAAGTCCTTACTGGGAATTGCCTTGCTGGAATCAGCATTGCTTGGTGGAAGTGGAACCACAATGCTCACCACATTGCCTGCAACAGTCTTGAATATGGCCCTGATCTTCAACACGTGCCATTCTTTGTGGTATCTTCCAAGTTTTTCGACTCACTCACTTCTTATTTTTACGATAGGAAGATGAATTTTGATTCTTTTACTAGATTCTTGGTTAGTCATCAACATTGGACATTTTATCCTGTTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594828" ref_strand="+" ref_description="SGN-U594828 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|129593742|gb|ABO31111.1| (e_value=4e-105) sphingolipid; (*ATH) AT3G61580.1 (e_value=2e-82)  Symbol: None | delta-8 sphingolipid desaturase (SLD1), identical to delta-8 sphingolipid desaturase GI:3819710 from (Arabidopsis thaliana); contains Pfam profile PF00487: Fatty acid desaturase; contains Pfam profile PF00173: Heme/Steroid binding dom... ; (*SWP) sp|Q9DEX7|FADS2_DANRE (e_value=4e-24) Fatty acid desaturase 2 OS=Danio rerio GN=fads2; ">
      <seq>atagaaaatatcttcaattttcattaaacaagttcaagatttttgcctacgattctttgctacacagacaagaatttagggaagggtctttttcagatctctttttctagcatttttcttatggcagattcaagaaagtacatttctagtgaggaactgaagaatcacaacaaaccaggggatctgtggatatccattcagggtaaggtgtatgatgtatcagattgggtgaaggaacatcctggtggtgatttcccactgttaaatcttgctggacaggatgttactgatgcatttgttgcatttcatcctgctactgcttggaagtatcttgacaagttctttaaggggttttacctcaaggattattctgtttctgaggtatctacggattatagaaggcttgtgtctgagttcactaaaatggggttgtttgaaaagaaaggccatgtttgtttattcaccatgttcttaatgacaatgttgttttccttaagtgtttatggaatcttgtattgtcatggtgtgttggcacatttgataagtggtgccttgatggggtgtctttggattcagagtgggtggattggtcatgattcagggcattatcaggtgatgagcactcgcggattcaacagatttgctcaagtccttactgggaattgccttgctggaatcagcattgcttggtggaagtggaaccacaatgctcaccacattgcctgcaacagtc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="112150" stop="113727"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112450" g_stop="112521" g_length="72"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="72" r_length="72" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="112522" i_stop="112766" i_length="245">
            <donor d_prob="0.909" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="112767" g_stop="113427" g_length="661"/>
          <reference_exon_boundary r_type="cDNA" r_start="73" r_stop="733" r_length="661" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-U594828" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>733</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U594828" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112450" e_stop="112521"/>
          <exon e_start="112767" e_stop="113427"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATAGAAAATATCTTCAATTTTCATTAAACAAGTTCAAGATTTTTGCCTACGATTCTTTGCTACACAGACAAGGTAAGAGGGTTTTGGTAAGTCTTTTGAACAGCTAACCATATATATATAGCCTTATAACTGAAAAGGGGTATGTATTAATTTTCAAAAAAAAAATATATGTTGTGGCGCCTCCTTGCATATGCCAACAATGTCTAGAGTTGCAGAAAAGTAAAAGGGTTTGTCAGAACAGAATTTCAATTAAAGATTACATCTTTTTACAAGTTGTGATCTTACAATTCTTGTTTTTTTTTTTCTTTTTTGAGAAGAATTTAGGGAAGGGTCTTTTTCAGATCTCTTTTTCTAGCATTTTTCTTATGGCAGATTCAAGAAAGTACATTTCTAGTGAGGAACTGAAGAATCACAACAAACCAGGGGATCTGTGGATATCCATTCAGGGTAAGGTGTATGATGTATCAGATTGGGTGAAGGAACATCCTGGTGGTGATTTCCCACTGTTAAATCTTGCTGGACAGGATGTTACTGATGCATTTGTTGCATTTCATCCTGCTACTGCTTGGAAGTATCTTGACAAGTTCTTTAAGGGGTTTTACCTCAAGGATTATTCTGTTTCTGAGGTATCTACGGATTATAGAAGGCTTGTGTCTGAGTTCACTAAAATGGGGTTGTTTGAAAAGAAAGGCCATGTTTGTTTATTCACCATGTTCTTAATGACAATGTTGTTTTCCTTAAGTGTTTATGGAATCTTGTATTGTCATGGTGTGTTGGCACATTTGATAAGTGGTGCCTTGATGGGGTGTCTTTGGATTCAGAGTGGGTGGATTGGTCATGATTCAGGGCATTATCAGGTGATGAGCACTCGCGGATTCAACAGATTTGCTCAAGTCCTTACTGGGAATTGCCTTGCTGGAATCAGCATTGCTTGGTGGAAGTGGAACCACAATGCTCACCACATTGCCTGCAACAGTC</genome_strand>
        <mrna_strand>ATAGAAAATATCTTCAATTTTCATTAAACAAGTTCAAGATTTTTGCCTACGATTCTTTGCTACACAGACAAG.....................................................................................................................................................................................................................................................AATTTAGGGAAGGGTCTTTTTCAGATCTCTTTTTCTAGCATTTTTCTTATGGCAGATTCAAGAAAGTACATTTCTAGTGAGGAACTGAAGAATCACAACAAACCAGGGGATCTGTGGATATCCATTCAGGGTAAGGTGTATGATGTATCAGATTGGGTGAAGGAACATCCTGGTGGTGATTTCCCACTGTTAAATCTTGCTGGACAGGATGTTACTGATGCATTTGTTGCATTTCATCCTGCTACTGCTTGGAAGTATCTTGACAAGTTCTTTAAGGGGTTTTACCTCAAGGATTATTCTGTTTCTGAGGTATCTACGGATTATAGAAGGCTTGTGTCTGAGTTCACTAAAATGGGGTTGTTTGAAAAGAAAGGCCATGTTTGTTTATTCACCATGTTCTTAATGACAATGTTGTTTTCCTTAAGTGTTTATGGAATCTTGTATTGTCATGGTGTGTTGGCACATTTGATAAGTGGTGCCTTGATGGGGTGTCTTTGGATTCAGAGTGGGTGGATTGGTCATGATTCAGGGCATTATCAGGTGATGAGCACTCGCGGATTCAACAGATTTGCTCAAGTCCTTACTGGGAATTGCCTTGCTGGAATCAGCATTGCTTGGTGGAAGTGGAACCACAATGCTCACCACATTGCCTGCAACAGTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595872" ref_strand="+" ref_description="SGN-U595872 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=4e-95) Polyprotein,; (*SWP) sp|Q7LHG5|YI31B_YEAST (e_value=9e-27) Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-I; ">
      <seq>gtccgagataaggtgttgcgaggagaggctaaagaagcaaaaatcaatgaggaatgtgttttgagaattaagggaagggtatgtgtaccccgcaccgatgatttgattcacactattcttacggaggctcatagttcaaggtattctatacatcctggtgcaaccaagatgtatcgtgacctaaagcaacatttttggtggagtaggatgaagcgtgacattgttgattttgttgctcaatgcccgaattgtcagcaagtaaagtatgaacaccaaaggcctggagggacacttcagagaatgcccattcctgaatggaagtgggagagaattgaaatggacttcgtggttggtctccaaagacaatgggtaagtatgacaccatatgggtaattgttgacagattaactaagtctgctcatttcattccggtcaaagtgacttataatgcagagaagttagccaaactttacatctcagaaattgtttgattgcatggaattccactttccattatatcagatagagttacgcagtttacttctaaattttggaaaacattgcatgccgagttaggtactaggttagatcttagtactgcattttaccctcagaccgatggtcagtctgagcgaataatttangtcttggaggatatgcttcgtgcatgtgtgatagaatttagtggncattgggataacttcttacncttagcanaattctcatacnacaatagctatcactca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="-" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="133540" stop="132196"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133241" g_stop="132496" g_length="746"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="746" r_length="746" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="-" ref_id="SGN-U595872" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>746</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U595872" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133241" e_stop="132496"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCCGAGATAAGGTGTTGCGAGGAGAGGCTAAAGAAGCAAAAATTGATGAGAAAGGTGTTTTGAGAATTAAGGGAAGGGTATGTGTACCCCGCGTCGATGATTTGATTCACACTATTCTTACGGAGGCCCATAGTTCAAGGTATTCTATACATCCTGGTGCAACCAAGATGTATCGTGATCTAAAGCAATATTTTTGGTGGAGTATGATTAAGCGTGACATTGTTGATTTTGTTGCTCAATTCCCGAATTGTCAGCAAGTAAAGTATGAATACCAGAGGCCTGGAGGGACACTTCAGAGAATGCCCATTCCTGAATGGAAGTGGGAGAGAATTGCAATGGACTTCGTGGTTGGTCTCCAAAGACGATGAGTAAGTATGACTCTATTTGGGTGATTTTTGATAGATTAACTAAGTCTGCTCATTTCATTCCGGTCAAGGTGACTTATAATGCAGAGAAGTTAGCCAAAATTTACATCTCAGAAATTGTTCGATTGCATGGAGTTCCACTCTCCATCATATGAGATAGAGGTACGCAGTTTACTTCTAAGTTTTGGAAAACATTGCATGCTGAATTAGGTACTAGATTGGATTTTAGTACTGCATTTCACCCTCAGACCGATGGTCAGTCTAAGCAAACGATTCAGGTTTTGGAGGATATGCTTCGTGCATGTGTGATAGAGTTTGGTGGTCATTGGGATAACTTCTTACCCTTAGCAGAGTTCTCATACAACAATAGCTATCACTCA</genome_strand>
        <mrna_strand>GTCCGAGATAAGGTGTTGCGAGGAGAGGCTAAAGAAGCAAAAATCAATGAGGAATGTGTTTTGAGAATTAAGGGAAGGGTATGTGTACCCCGCACCGATGATTTGATTCACACTATTCTTACGGAGGCTCATAGTTCAAGGTATTCTATACATCCTGGTGCAACCAAGATGTATCGTGACCTAAAGCAACATTTTTGGTGGAGTAGGATGAAGCGTGACATTGTTGATTTTGTTGCTCAATGCCCGAATTGTCAGCAAGTAAAGTATGAACACCAAAGGCCTGGAGGGACACTTCAGAGAATGCCCATTCCTGAATGGAAGTGGGAGAGAATTGAAATGGACTTCGTGGTTGGTCTCCAAAGACAATGGGTAAGTATGACACCATATGGGTAATTGTTGACAGATTAACTAAGTCTGCTCATTTCATTCCGGTCAAAGTGACTTATAATGCAGAGAAGTTAGCCAAACTTTACATCTCAGAAATTGTTTGATTGCATGGAATTCCACTTTCCATTATATCAGATAGAGTTACGCAGTTTACTTCTAAATTTTGGAAAACATTGCATGCCGAGTTAGGTACTAGGTTAGATCTTAGTACTGCATTTTACCCTCAGACCGATGGTCAGTCTGAGCGAATAATTTANGTCTTGGAGGATATGCTTCGTGCATGTGTGATAGAATTTAGTGGNCATTGGGATAACTTCTTACNCTTAGCANAATTCTCATACNACAATAGCTATCACTCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575264" ref_strand="+" ref_description="SGN-U575264 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=2e-67) Putative; (*SWP) sp|Q9UR07|RT23_SCHPO (e_value=5e-21) Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11; ">
      <seq>acccaattccgcatgcaatgttttccaaaacttagaagtaaactgcatacctctatctgatatgatggagagtggaaccccatgcaaccgaacaatttctgagacatatattttggctaacttctctgcattgtaagtcaccttgaccggaatgaaatgagcagacttagttaacctatcaacaatcacccaaatagagtcatacttactcattgtctttggaaggccaactacaaaatccattgcaattctctcccacttccattcaggaatgagcattctctgaagtgttcctccaggcctctggtgttcatactttacttgttgacagtttggacatttggcaataaagtcaacaatatcacgcttcattctactccaccaaaagtgttgctttaggtcacggtacatcttggttgcacccggatgtatagaataccttgaactatgagcctctgtcagaatagtgttgatcaaatcatcaactcggggt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="132364" stop="133455"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132664" g_stop="133155" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="493" r_length="493" r_score="0.904"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-U575264" ref_strand="+">
        <total_alignment_score>0.904</total_alignment_score>
        <cumulative_length_of_scored_exons>492</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U575264" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132664" e_stop="133155"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTAATTCAGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTCATATGATGGAGAGTGGAACTCCATGCAATCGAACAATTTCTGAGATGTAAATTTTGGCTAACTTCTCTGCATTATAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAATCTATCAAAAATCACCCAAATAGAGTCATACTTACTCATCGTCTTTGG-AGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTATTCATACTTTACTTGCTGACAATTCGGGAATTGAGCAACAAAATCAACAATGTCACGCTTAATCATACTCCACCAAAAATATTGCTTTAGATCACGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGGGCCTCCGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGT</genome_strand>
        <mrna_strand>ACCCAATTCCGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCATACCTCTATCTGATATGATGGAGAGTGGAACCCCATGCAACCGAACAATTTCTGAGACATATATTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAACCTATCAACAATCACCCAAATAGAGTCATACTTACTCATTGTCTTTGGAAGGCCAACTACAAAATCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGAGCATTCTCTGAAGTGTTCCTCCAGGCCTCTGGTGTTCATACTTTACTTGTTGACAGTTTGGACATTTGGCAATAAAGTCAACAATATCACGCTTCATTCTACTCCACCAAAAGTGTTGCTTTAGGTCACGGTACATCTTGGTTGCACCCGGATGTATAGAATACCTTGAACTATGAGCCTCTGTCAGAATAGTGTTGATCAAATCATCAACTCGGGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U595870" ref_strand="+" ref_description="SGN-U595870 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|113205363|gb|AAT66771.2| (e_value=4e-63) Putative; (*SWP) sp|Q9UR07|RT23_SCHPO (e_value=4e-20) Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11; ">
      <seq>ctcggcatgtactgttttccaaaacttagaagtaaattgcgtacctctatctgatatgatggagagtggaactccgtgcaatcgaacaatttctaagatgtaaagtttggctaacttctctgcattgtaagtcaccttaaccgaaatagagtgagcagacttagttaatctgtcaacaatcacccaaatagagtcatacctacccatcgtctttggatgactaaccacgaagtccattgcaattctctcccacttccattcaggaatgggcattctctgaagtgtccctccaggcctctggtgttcatactttacttgctgacaattcgggcattgagcaacaaaattaacaatgtcacgcttcatcctactccaccaaaaatgttgctttaggtcacgatacatcttgtttgcaccaggatgtatagagtacttcgaactatgagcctatataagaatagtgtgaatcaaatcatcgacgcggggtacacatac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="132371" stop="133463"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="132670" g_stop="133163" g_length="494"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="495" r_length="495" r_score="0.925"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-U595870" ref_strand="+">
        <total_alignment_score>0.925</total_alignment_score>
        <cumulative_length_of_scored_exons>494</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U595870" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="132670" e_stop="133163"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCAGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTCATATGATGGAGAGTGGAACTCCATGCAATCGAACAATTTCTGAGATGTAAATTTTGGCTAACTTCTCTGCATTATAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAATCTATCAAAAATCACCCAAATAGAGTCATACTTACTCATCGTCTTTGGA-GACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTATTCATACTTTACTTGCTGACAATTCGGGAATTGAGCAACAAAATCAACAATGTCACGCTTAATCATACTCCACCAAAAATATTGCTTTAGATCACGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGGGCCTCCGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATAC</genome_strand>
        <mrna_strand>CTCGGCATGTACTGTTTTCCAAAACTTAGAAGTAAATTGCGTACCTCTATCTGATATGATGGAGAGTGGAACTCCGTGCAATCGAACAATTTCTAAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTAACCGAAATAGAGTGAGCAGACTTAGTTAATCTGTCAACAATCACCCAAATAGAGTCATACCTACCCATCGTCTTTGGATGACTAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTGTTCATACTTTACTTGCTGACAATTCGGGCATTGAGCAACAAAATTAACAATGTCACGCTTCATCCTACTCCACCAAAAATGTTGCTTTAGGTCACGATACATCTTGTTTGCACCAGGATGTATAGAGTACTTCGAACTATGAGCCTATATAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U575265" ref_strand="+" ref_description="SGN-U575265 Tomato 200607#2 [3 ESTs aligned] (*GB) gi|113205316|gb|ABI34339.1| (e_value=2e-65) Polyprotein,; (*SWP) sp|P04323|POL3_DROME (e_value=2e-11) Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol; ">
      <seq>ggcctctgtaagaatagtgtgaatcaaatcgtcggcacggggtacacatacctttcccttaatcctcaaaacaccttccttatcgatttttgcttctttagcctctcctcgcattaccttatctcgaatccagatcagtttctcatcggtaaactgctttcctttaatcttatcaagaaaggaagatcttgcctccacacaagccaaaaattctcccttctcatttaattctagcctcataaggtcattagccagagtctgaacctctctagccaatgggcatctagaaacctgcaagtgagctagacttcccatgctccctgcctttctacttaaagcatctgccacaacattagcctttcccggatgatacaagatagtgatatcatagtccttcagtagctccatcgatctcctctgtctcaaattcaaatctttctgagtaaagacatactgtaaactacgatgatccatatagacttcacacttaaccccatagagataatgtctctattactttaatgcaatcactactgccgctaactccaaatcatgggtcggataattacgttcatgcacctttaattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0076I13-SnUG5/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0076I13.1" temp_strand="+" temp_description="C00HBa0076I13.1  CU457765.7 htgs_phase:3 submitted_to_sgn_as:C04HBa0076I13 sequenced_by:sanger upload_account_name:uk">
        <position start="132813" stop="133977"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="133113" g_stop="133701" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="588" r_length="588" r_score="0.939"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0076I13.1" gen_strand="+" ref_id="SGN-U575265" ref_strand="+">
        <total_alignment_score>0.939</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0076I13.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U575265" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="133113" e_stop="133701"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGCCTCCGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAACACCTTTCTCATCAATTTTTGCTTCTTTAGCCTCTCCTCGCAACACCTTATCTCGGATCCGGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTGATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCATTTACTTCTAGCCTCATAAGGTCATTAGCCAAAGTCTGAACCTCTCTAGCCAATGGGCGTCTAGGAACCTGCAAGTGGGCTAGGCTTCCCATGCTCCCTGCCTTTCTACTTAAGGCATCTGCCACCACATTAGCCTTTCCCGGATGATACAAGATAGTGATAATCATAGTCCTTCAGTAGTTCCATCCATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATATAGATAATGCCTCCATTGCTTTAATGCAAACACTACTGCTTCTAACTCCAAATCGTGGGTCGGATAATTACGTTCATGCACTTTTAATTG</genome_strand>
        <mrna_strand>GGCCTCTGTAAGAATAGTGTGAATCAAATCGTCGGCACGGGGTACACATACCTTTCCCTTAATCCTCAAAACACCTTCCTTATCGATTTTTGCTTCTTTAGCCTCTCCTCGCATTACCTTATCTCGAATCCAGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTAATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAAGCCAAAAATTCTCCCTTCTCATTTAATTCTAGCCTCATAAGGTCATTAGCCAGAGTCTGAACCTCTCTAGCCAATGGGCATCTAGAAACCTGCAAGTGAGCTAGACTTCCCATGCTCCCTGCCTTTCTACTTAAAGCATCTGCCACAACATTAGCCTTTCCCGGATGATACAAGATAGTGAT-ATCATAGTCCTTCAGTAGCTCCATCGATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATAGAGATAATGTCTCTATTACTTTAATGCAATCACTACTGCCGCTAACTCCAAATCATGGGTCGGATAATTACGTTCATGCACCTTTAATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>21</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="871" PGL_stop="1662"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="871" e_stop="1662"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="871" e_stop="1662" e_length="792"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="871" stop="1662"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U570769" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTATGTCGATCGGAAGACAGAAAAATTCCAGAGCTACAAGGAGACGTTGGGAAACTCCATAAAACCCATGACAATGTTTGTTTAAATGCAGCTACAGCCAGCACATCTACAACAAAAGGAGTCAGTGGAATAAGATATACAAATTTAAATATGAACAAAATCTTTGATAAACCATTTATTCCAAAGAACCAAAAAGACTCATTATTTATACCACCACAAATAACTACTTACTCAGAAAGTTTAAGCCAAGATAAAAAAAGCCTACAACCACAAAACTCGCTCATATATTGAAAACCTTTATAAAAATTCAAAATTATTTAAACTCAACACCTAGATCTCCAACTACCAAAGACCCTAATACTGATTTTATAACCCAAAAGCTACAAGGATATAATAAGTTAATAGCACAATCAGGCACCAATGCAAATCTAGTAAAAACATGTTATAGTTATGGACTACTTAGCATAGTTTATACCCAAACAGGAGATGAAATATCTACCATACCGGAGCTATACAAAGCCTTTATGAACTATAAAAGAATTACCAAAGGAACATTATTTTATATAAAGTTTTATTCAGCACCAGCAGAGATATTATTTGATGAGATAAAACCAATTATACAAGTTATAAAGATTGGTTTGACCAGAGATATGATAATTCCAGAAGATATCGAAATGCAGCAAGAAATACAAAGGATTGAGATACCAGAATTTTACGCCAACAAAAGAGTTATAGGGATAGCAACTATCCTAATGAACTAACTAACAATTATTTAAACGGAAATTCAGTAT</gDNA_template>
            <first_frame> A  M  S  I  G  R  Q  K  N  S  R  A  T  R  R  R  W  E  T  P  *  N  P  *  Q  C  L  F  K  C  S  Y  S  Q  H  I  Y  N  K  R  S  Q  W  N  K  I  Y  K  F  K  Y  E  Q  N  L  *  *  T  I  Y  S  K  E  P  K  R  L  I  I  Y  T  T  T  N  N  Y  L  L  R  K  F  K  P  R  *  K  K  P  T  T  T  K  L  A  H  I  L  K  T  F  I  K  I  Q  N  Y  L  N  S  T  P  R  S  P  T  T  K  D  P  N  T  D  F  I  T  Q  K  L  Q  G  Y  N  K  L  I  A  Q  S  G  T  N  A  N  L  V  K  T  C  Y  S  Y  G  L  L  S  I  V  Y  T  Q  T  G  D  E  I  S  T  I  P  E  L  Y  K  A  F  M  N  Y  K  R  I  T  K  G  T  L  F  Y  I  K  F  Y  S  A  P  A  E  I  L  F  D  E  I  K  P  I  I  Q  V  I  K  I  G  L  T  R  D  M  I  I  P  E  D  I  E  M  Q  Q  E  I  Q  R  I  E  I  P  E  F  Y  A  N  K  R  V  I  G  I  A  T  I  L  M  N  *  L  T  I  I  *  T  E  I  Q  Y </first_frame>
            <second_frame>  L  C  R  S  E  D  R  K  I  P  E  L  Q  G  D  V  G  K  L  H  K  T  H  D  N  V  C  L  N  A  A  T  A  S  T  S  T  T  K  G  V  S  G  I  R  Y  T  N  L  N  M  N  K  I  F  D  K  P  F  I  P  K  N  Q  K  D  S  L  F  I  P  P  Q  I  T  T  Y  S  E  S  L  S  Q  D  K  K  S  L  Q  P  Q  N  S  L  I  Y  *  K  P  L  *  K  F  K  I  I  *  T  Q  H  L  D  L  Q  L  P  K  T  L  I  L  I  L  *  P  K  S  Y  K  D  I  I  S  *  *  H  N  Q  A  P  M  Q  I  *  *  K  H  V  I  V  M  D  Y  L  A  *  F  I  P  K  Q  E  M  K  Y  L  P  Y  R  S  Y  T  K  P  L  *  T  I  K  E  L  P  K  E  H  Y  F  I  *  S  F  I  Q  H  Q  Q  R  Y  Y  L  M  R  *  N  Q  L  Y  K  L  *  R  L  V  *  P  E  I  *  *  F  Q  K  I  S  K  C  S  K  K  Y  K  G  L  R  Y  Q  N  F  T  P  T  K  E  L  *  G  *  Q  L  S  *  *  T  N  *  Q  L  F  K  R  K  F  S   </second_frame>
            <third_frame>   Y  V  D  R  K  T  E  K  F  Q  S  Y  K  E  T  L  G  N  S  I  K  P  M  T  M  F  V  *  M  Q  L  Q  P  A  H  L  Q  Q  K  E  S  V  E  *  D  I  Q  I  *  I  *  T  K  S  L  I  N  H  L  F  Q  R  T  K  K  T  H  Y  L  Y  H  H  K  *  L  L  T  Q  K  V  *  A  K  I  K  K  A  Y  N  H  K  T  R  S  Y  I  E  N  L  Y  K  N  S  K  L  F  K  L  N  T  *  I  S  N  Y  Q  R  P  *  Y  *  F  Y  N  P  K  A  T  R  I  *  *  V  N  S  T  I  R  H  Q  C  K  S  S  K  N  M  L  *  L  W  T  T  *  H  S  L  Y  P  N  R  R  *  N  I  Y  H  T  G  A  I  Q  S  L  Y  E  L  *  K  N  Y  Q  R  N  I  I  L  Y  K  V  L  F  S  T  S  R  D  I  I  *  *  D  K  T  N  Y  T  S  Y  K  D  W  F  D  Q  R  Y  D  N  S  R  R  Y  R  N  A  A  R  N  T  K  D  *  D  T  R  I  L  R  Q  Q  K  S  Y  R  D  S  N  Y  P  N  E  L  T  N  N  Y  L  N  G  N  S  V  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="1126" stop="1632"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>504</number_coding_nucleotides>
                  <number_encoded_amino_acids>168</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>KKPTTTKLAHILKTFIKIQNYLNSTPRSPTTKDPNTDFITQKLQGYNKLIAQSGTNANLVKTCYSYGLLSIVYTQTGDEISTIPELYKAFMNYKRITKGTLFYIKFYSAPAEILFDEIKPIIQVIKIGLTRDMIIPEDIEMQQEIQRIEIPEFYANKRVIGIATILMN*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="+" PGL_start="2430" PGL_stop="2572"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="2430" e_stop="2572"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="2430" e_stop="2572" e_length="143"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="2430" stop="2572"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586406" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAATCTCTTGTTGATAATAATTGTTTATCATATTTTAATAATGTTCTAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTGCGAATAGGTATGCTCAGACTATGCCATCCTAAGGTTGAAACCGATAAGCAAGAAGG</gDNA_template>
            <first_frame> I  I  S  C  *  *  *  L  F  I  I  F  *  *  C  S  N  N  H  L  *  K  V  C  Y  R  N  I  L  R  I  G  M  L  R  L  C  H  P  K  V  E  T  D  K  Q  E   </first_frame>
            <second_frame>  *  S  L  V  D  N  N  C  L  S  Y  F  N  N  V  L  I  T  I  F  R  K  F  A  T  E  I  F  C  E  *  V  C  S  D  Y  A  I  L  R  L  K  P  I  S  K  K  </second_frame>
            <third_frame>   N  L  L  L  I  I  I  V  Y  H  I  L  I  M  F  *  *  P  S  L  E  S  L  L  Q  K  Y  S  A  N  R  Y  A  Q  T  M  P  S  *  G  *  N  R  *  A  R  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0076I13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="7065" PGL_stop="6923"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="7065" e_stop="6923"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.909"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.909">
            <gDNA_exon_boundary e_start="7065" e_stop="6923" e_length="143"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="7065" stop="6923"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586406" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATAATCTTTTGTTGATTATAATTGTTTATCATGTTTTAATAATGTTCTAATAACCATCTTTAGAAAGTTTGCTACAGAAATATTCTGCGAATAGGTATGCTCAGACTATGTCATCCTAAGGTTGAAATCGATAGGCAAGAAGG</gDNA_template>
            <first_frame> I  I  F  C  *  L  *  L  F  I  M  F  *  *  C  S  N  N  H  L  *  K  V  C  Y  R  N  I  L  R  I  G  M  L  R  L  C  H  P  K  V  E  I  D  R  Q  E   </first_frame>
            <second_frame>  *  S  F  V  D  Y  N  C  L  S  C  F  N  N  V  L  I  T  I  F  R  K  F  A  T  E  I  F  C  E  *  V  C  S  D  Y  V  I  L  R  L  K  S  I  G  K  K  </second_frame>
            <third_frame>   N  L  L  L  I  I  I  V  Y  H  V  L  I  M  F  *  *  P  S  L  E  S  L  L  Q  K  Y  S  A  N  R  Y  A  Q  T  M  S  S  *  G  *  N  R  *  A  R  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0076I13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="+" PGL_start="15518" PGL_stop="16234"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="15518" e_stop="16234"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.919"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.919">
            <gDNA_exon_boundary e_start="15518" e_stop="16234" e_length="717"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="15518" stop="16234"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577328" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AATTGTTGGGTTATGGGCCTTTTTTCCTTCCTATGTGGATAAATAAAAGCCCAATTTGGACCAACCCATTTTTTCCCATAGGCCCATTCTTATGAGGCAAATATAAGCCTATTTAGGTCTTATTTTCATATACACAGAGAGTTTTTTTCAGCAGCCAAAAAGAGAGAAAGAGGGCAGTTTTCGCAGTCAAAATTCAGCCCTAACAGCCAACTTCAAATTGCGATTCCCGCTTCGTTTCTTGTCCGATTGAGCTGATTTTTGGACAGCATATTATCTTCATCTCAATGTTTGATTAGGAACTGACAGAGTTGAATTTGGTGACCTGCAGCTTCAGTTTTGCTGTCGTGAACAGTAGTTGCGAAATTAGTGATTTTGCTCCTTTAATTCTCTAGATTTGGTGCAATCTTATTTTGTTGTTGCTCGTTGTTTGGTACTTGTTTTCTGGCCAATTTTGGAGAACAATATTGTAACTCTTGGTGATTATAGTGGAGCTTTTGGTCCCGTGGTTTTTTACTCTTCACGTCGAAGGGTTTTCCACGTAAATCTTGGTGTCTTGTGTGATTGGTTTATTATTGCCTTGTTATATTTGTTTGGTTGAATTACTTGCTGCCTTACTATCATATTGCTTGTGGTTGTTTGTCTTCTCTTGGTTCAAATCGAGAAGGGAAAGTATAGACTTGGGTATTCTTCCGCTGTTATCCTGTCAGGCATTCTTTG</gDNA_template>
            <first_frame> N  C  W  V  M  G  L  F  S  F  L  C  G  *  I  K  A  Q  F  G  P  T  H  F  F  P  *  A  H  S  Y  E  A  N  I  S  L  F  R  S  Y  F  H  I  H  R  E  F  F  S  A  A  K  K  R  E  R  G  Q  F  S  Q  S  K  F  S  P  N  S  Q  L  Q  I  A  I  P  A  S  F  L  V  R  L  S  *  F  L  D  S  I  L  S  S  S  Q  C  L  I  R  N  *  Q  S  *  I  W  *  P  A  A  S  V  L  L  S  *  T  V  V  A  K  L  V  I  L  L  L  *  F  S  R  F  G  A  I  L  F  C  C  C  S  L  F  G  T  C  F  L  A  N  F  G  E  Q  Y  C  N  S  W  *  L  *  W  S  F  W  S  R  G  F  L  L  F  T  S  K  G  F  P  R  K  S  W  C  L  V  *  L  V  Y  Y  C  L  V  I  F  V  W  L  N  Y  L  L  P  Y  Y  H  I  A  C  G  C  L  S  S  L  G  S  N  R  E  G  K  V  *  T  W  V  F  F  R  C  Y  P  V  R  H  S  L </first_frame>
            <second_frame>  I  V  G  L  W  A  F  F  P  S  Y  V  D  K  *  K  P  N  L  D  Q  P  I  F  S  H  R  P  I  L  M  R  Q  I  *  A  Y  L  G  L  I  F  I  Y  T  E  S  F  F  Q  Q  P  K  R  E  K  E  G  S  F  R  S  Q  N  S  A  L  T  A  N  F  K  L  R  F  P  L  R  F  L  S  D  *  A  D  F  W  T  A  Y  Y  L  H  L  N  V  *  L  G  T  D  R  V  E  F  G  D  L  Q  L  Q  F  C  C  R  E  Q  *  L  R  N  *  *  F  C  S  F  N  S  L  D  L  V  Q  S  Y  F  V  V  A  R  C  L  V  L  V  F  W  P  I  L  E  N  N  I  V  T  L  G  D  Y  S  G  A  F  G  P  V  V  F  Y  S  S  R  R  R  V  F  H  V  N  L  G  V  L  C  D  W  F  I  I  A  L  L  Y  L  F  G  *  I  T  C  C  L  T  I  I  L  L  V  V  V  C  L  L  L  V  Q  I  E  K  G  K  Y  R  L  G  Y  S  S  A  V  I  L  S  G  I  L   </second_frame>
            <third_frame>   L  L  G  Y  G  P  F  F  L  P  M  W  I  N  K  S  P  I  W  T  N  P  F  F  P  I  G  P  F  L  *  G  K  Y  K  P  I  *  V  L  F  S  Y  T  Q  R  V  F  F  S  S  Q  K  E  R  K  R  A  V  F  A  V  K  I  Q  P  *  Q  P  T  S  N  C  D  S  R  F  V  S  C  P  I  E  L  I  F  G  Q  H  I  I  F  I  S  M  F  D  *  E  L  T  E  L  N  L  V  T  C  S  F  S  F  A  V  V  N  S  S  C  E  I  S  D  F  A  P  L  I  L  *  I  W  C  N  L  I  L  L  L  L  V  V  W  Y  L  F  S  G  Q  F  W  R  T  I  L  *  L  L  V  I  I  V  E  L  L  V  P  W  F  F  T  L  H  V  E  G  F  S  T  *  I  L  V  S  C  V  I  G  L  L  L  P  C  Y  I  C  L  V  E  L  L  A  A  L  L  S  Y  C  L  W  L  F  V  F  S  W  F  K  S  R  R  E  S  I  D  L  G  I  L  P  L  L  S  C  Q  A  F  F  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="+"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="15888" stop="16115"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FCSFNSLDLVQSYFVVARCLVLVFWPILENNIVTLGDYSGAFGPVVFYSSRRRVFHVNLGVLCDWFIIALLYLFG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="19636" PGL_stop="22381"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="19636" e_stop="20024"/>
            <exon e_start="20232" e_stop="20628"/>
            <exon e_start="21718" e_stop="21830"/>
            <exon e_start="22110" e_stop="22155"/>
            <exon e_start="22261" e_stop="22381"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.991" acc_prob="0.946" e_score="0.995"/>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="0.992"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="19636" e_stop="20024" e_length="389"/>
          </exon>
          <intron i_serial="1" don_prob="0.991" acc_prob="0.946">
            <gDNA_intron_boundary i_start="20025" i_stop="20231" i_length="207"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="20232" e_stop="20628" e_length="397"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="20629" i_stop="21717" i_length="1089"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="21718" e_stop="21830" e_length="113"/>
          </exon>
          <intron i_serial="3" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="21831" i_stop="22109" i_length="279"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="22110" e_stop="22155" e_length="46"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="22156" i_stop="22260" i_length="105"/>
          </intron>
          <exon e_serial="5" e_score="0.992">
            <gDNA_exon_boundary e_start="22261" e_stop="22381" e_length="121"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="19636" stop="20024"/>
              <exon start="20232" stop="20628"/>
              <exon start="21718" stop="21830"/>
              <exon start="22110" stop="22155"/>
              <exon start="22261" stop="22381"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U581130" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCAGACCTTTAGTTTTCTTGAACAAGATAGGGAACTATTAATTATTACTCTTTGCTTTCCTCTTTCTTCTTTTACCTTTTGTCATCTCTAGGGTTTCAGACAAAGCAGCCAAATATATTTTTTATATATATATATATATAAACAACAAACTACATCTCTTACTTACACCAACTACTCTACTTTTGCTTTTATTTTTTATGAGAGAATGATAAAAGGTATGCTAGGAGATGATAGTATGTCAAATTTAACAAGTGCATCTAATGAAGCAAGCATATCTTCAACCAACAATAGAATTGAAATTGGTAGTCATGTTCTCTACCCACAACTACAAAACATTCAAACCCAACCACCTCCTAACAAGAAGAAGAGAAATCTACCAGGAAATCCAG : ATCCAGAAGCAGAAGTTGTAGCATTATCTCCAAGAAGTCTATTGGCAACCAATAGATTTGTATGTGAGATATGTAACAAAGGATTTCAAAGAGATCAAAATCTTCAACTACATAGAAGAGGACATAATTTGCCCTGGAAATTAAAGCAAAGAAGCAATAAAGAAGTGAAGAAGAAAGTATATGTGTGTCCAGAAGCATCATGTGTACATCATCATCCATCAAGAGCCTTAGGGGATCTGACTGGGATTAAGAAGCATTTCTGTAGAAAACATGGTGAGAAAAAATGGAAATGTGAAAAATGTTCAAAACGTTATGCAGTTCAATCTGATTGGAAAGCTCACTCTAAGATTTGTGGTACAAGAGAGTATAGATGTGATTGTGGAACCCTTTTCTCTAG : GAGGGATAGTTTCATTACACACAGAGCCTTTTGTGATGCTTTAACAGAAGAAAGTTCAAGAACAATAATCCCACCACCAAATTCTTCAACTTCTCATCATCTTAATCTTCATA : CACGTCAATATCATCCATTTGAAAATAATAATAATAATAATAATAC : TACTGCACCTTCTTTGCCATGTACTAGTTTTGATGAAGGATTTGGTCGCGGCGCGCATTTGATGAGACAAGGTAAAGAAAATAATGAAGGGTTGACAAGAGATTTTTTGGGACTTAGAGCA</gDNA_template>
            <first_frame> S  D  L  *  F  S  *  T  R  *  G  T  I  N  Y  Y  S  L  L  S  S  F  F  F  Y  L  L  S  S  L  G  F  Q  T  K  Q  P  N  I  F  F  I  Y  I  Y  I  *  T  T  N  Y  I  S  Y  L  H  Q  L  L  Y  F  C  F  Y  F  L  *  E  N  D  K  R  Y  A  R  R  *  *  Y  V  K  F  N  K  C  I  *  *  S  K  H  I  F  N  Q  Q  *  N  *  N  W  *  S  C  S  L  P  T  T  T  K  H  S  N  P  T  T  S  *  Q  E  E  E  K  S  T  R  K  S  R :   S  R  S  R  S  C  S  I  I  S  K  K  S  I  G  N  Q  *  I  C  M  *  D  M  *  Q  R  I  S  K  R  S  K  S  S  T  T  *  K  R  T  *  F  A  L  E  I  K  A  K  K  Q  *  R  S  E  E  E  S  I  C  V  S  R  S  I  M  C  T  S  S  S  I  K  S  L  R  G  S  D  W  D  *  E  A  F  L  *  K  T  W  *  E  K  M  E  M  *  K  M  F  K  T  L  C  S  S  I  *  L  E  S  S  L  *  D  L  W  Y  K  R  V  *  M  *  L  W  N  P  F  L  *  :  E  G  *  F  H  Y  T  Q  S  L  L  *  C  F  N  R  R  K  F  K  N  N  N  P  T  T  K  F  F  N  F  S  S  S  *  S  S  Y :   T  S  I  S  S  I  *  K  *  *  *  *  *  *  Y  :  Y  C  T  F  F  A  M  Y  *  F  *  *  R  I  W  S  R  R  A  F  D  E  T  R  *  R  K  *  *  R  V  D  K  R  F  F  G  T  *  S  </first_frame>
            <second_frame>  Q  T  F  S  F  L  E  Q  D  R  E  L  L  I  I  T  L  C  F  P  L  S  S  F  T  F  C  H  L  *  G  F  R  Q  S  S  Q  I  Y  F  L  Y  I  Y  I  Y  K  Q  Q  T  T  S  L  T  Y  T  N  Y  S  T  F  A  F  I  F  Y  E  R  M  I  K  G  M  L  G  D  D  S  M  S  N  L  T  S  A  S  N  E  A  S  I  S  S  T  N  N  R  I  E  I  G  S  H  V  L  Y  P  Q  L  Q  N  I  Q  T  Q  P  P  P  N  K  K  K  R  N  L  P  G  N  P   : D  P  E  A  E  V  V  A  L  S  P  R  S  L  L  A  T  N  R  F  V  C  E  I  C  N  K  G  F  Q  R  D  Q  N  L  Q  L  H  R  R  G  H  N  L  P  W  K  L  K  Q  R  S  N  K  E  V  K  K  K  V  Y  V  C  P  E  A  S  C  V  H  H  H  P  S  R  A  L  G  D  L  T  G  I  K  K  H  F  C  R  K  H  G  E  K  K  W  K  C  E  K  C  S  K  R  Y  A  V  Q  S  D  W  K  A  H  S  K  I  C  G  T  R  E  Y  R  C  D  C  G  T  L  F  S  R :   R  D  S  F  I  T  H  R  A  F  C  D  A  L  T  E  E  S  S  R  T  I  I  P  P  P  N  S  S  T  S  H  H  L  N  L  H   : T  R  Q  Y  H  P  F  E  N  N  N  N  N  N  N  T :   T  A  P  S  L  P  C  T  S  F  D  E  G  F  G  R  G  A  H  L  M  R  Q  G  K  E  N  N  E  G  L  T  R  D  F  L  G  L  R  A </second_frame>
            <third_frame>   R  P  L  V  F  L  N  K  I  G  N  Y  *  L  L  L  F  A  F  L  F  L  L  L  P  F  V  I  S  R  V  S  D  K  A  A  K  Y  I  F  Y  I  Y  I  Y  I  N  N  K  L  H  L  L  L  T  P  T  T  L  L  L  L  L  F  F  M  R  E  *  *  K  V  C  *  E  M  I  V  C  Q  I  *  Q  V  H  L  M  K  Q  A  Y  L  Q  P  T  I  E  L  K  L  V  V  M  F  S  T  H  N  Y  K  T  F  K  P  N  H  L  L  T  R  R  R  E  I  Y  Q  E  I  Q  :  I  Q  K  Q  K  L  *  H  Y  L  Q  E  V  Y  W  Q  P  I  D  L  Y  V  R  Y  V  T  K  D  F  K  E  I  K  I  F  N  Y  I  E  E  D  I  I  C  P  G  N  *  S  K  E  A  I  K  K  *  R  R  K  Y  M  C  V  Q  K  H  H  V  Y  I  I  I  H  Q  E  P  *  G  I  *  L  G  L  R  S  I  S  V  E  N  M  V  R  K  N  G  N  V  K  N  V  Q  N  V  M  Q  F  N  L  I  G  K  L  T  L  R  F  V  V  Q  E  S  I  D  V  I  V  E  P  F  S  L   : G  G  I  V  S  L  H  T  E  P  F  V  M  L  *  Q  K  K  V  Q  E  Q  *  S  H  H  Q  I  L  Q  L  L  I  I  L  I  F  I  :  H  V  N  I  I  H  L  K  I  I  I  I  I  I  I   : L  L  H  L  L  C  H  V  L  V  L  M  K  D  L  V  A  A  R  I  *  *  D  K  V  K  K  I  M  K  G  *  Q  E  I  F  W  D  L  E   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="19727" stop="20024"/>
                    <exon start="20232" stop="20628"/>
                    <exon start="21718" stop="21830"/>
                    <exon start="22110" stop="22155"/>
                    <exon start="22261" stop="22381"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>975</number_coding_nucleotides>
                  <number_encoded_amino_acids>325</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GFRQSSQIYFLYIYIYKQQTTSLTYTNYSTFAFIFYERMIKGMLGDDSMSNLTSASNEASISSTNNRIEIGSHVLYPQLQNIQTQPPPNKKKRNLPGNPDPEAEVVALSPRSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVKKKVYVCPEASCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALTEESSRTIIPPPNSSTSHHLNLHTRQYHPFENNNNNNNTTAPSLPCTSFDEGFGRGAHLMRQGKENNEGLTRDFLGLRA</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="20610" e_stop="20628"/>
            <exon e_start="21718" e_stop="22295"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.997" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="20610" e_stop="20628" e_length="19"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.997">
            <gDNA_intron_boundary i_start="20629" i_stop="21717" i_length="1089"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="21718" e_stop="22295" e_length="578"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="20610" stop="20628"/>
              <exon start="21718" stop="22295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U592407" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGGAACCCTTTTCTCTAG : GAGGGATAGTTTCATTACACACAGAGCCTTTTGTGATGCTTTAACAGAAGAAAGTTCAAGAACAATAATCCCACCACCAAATTCTTCAACTTCTCATCATCTTAATCTTCATACACTTCAAAACTTCCAAATGAAACAAGAACAGCAACAACAAAATAACGACCTCTCCTCTCAGTTATTCATTCAAAACCCTAATGGCAATAGTAGTAACATGTTCGGTGCACCACCTCCTCATATGAGCGCAACTGCATTGCTACAAAAAGCAGCACAAATTGGAGTAACTTCTTCTTCTCATACTGCTAATAACATGAGCGCCACAACTTTTTTCAGTCCTACTACCAGTACAACAACTGGCATTGCAATGTCAGGATCAGGATCAGGAGCAGGAGTAGCACGTCAATATCATCCATTTGAAAATAATAATAATAATAATAATACAAACACTGATTTTGTTACTGGTAATACGTCTTTTCCTGATTTTGGTGCGAGTGTCACCCCTGGGTTCATGGAACAAGTCCATGACATGCAAAACATGATGGCTACTACTGCACCTTCTTTGCCATGTACTAGTTTTGATG</gDNA_template>
            <first_frame> V  E  P  F  S  L   : G  G  I  V  S  L  H  T  E  P  F  V  M  L  *  Q  K  K  V  Q  E  Q  *  S  H  H  Q  I  L  Q  L  L  I  I  L  I  F  I  H  F  K  T  S  K  *  N  K  N  S  N  N  K  I  T  T  S  P  L  S  Y  S  F  K  T  L  M  A  I  V  V  T  C  S  V  H  H  L  L  I  *  A  Q  L  H  C  Y  K  K  Q  H  K  L  E  *  L  L  L  L  I  L  L  I  T  *  A  P  Q  L  F  S  V  L  L  P  V  Q  Q  L  A  L  Q  C  Q  D  Q  D  Q  E  Q  E  *  H  V  N  I  I  H  L  K  I  I  I  I  I  I  I  Q  T  L  I  L  L  L  V  I  R  L  F  L  I  L  V  R  V  S  P  L  G  S  W  N  K  S  M  T  C  K  T  *  W  L  L  L  H  L  L  C  H  V  L  V  L  M </first_frame>
            <second_frame>  W  N  P  F  L  *  :  E  G  *  F  H  Y  T  Q  S  L  L  *  C  F  N  R  R  K  F  K  N  N  N  P  T  T  K  F  F  N  F  S  S  S  *  S  S  Y  T  S  K  L  P  N  E  T  R  T  A  T  T  K  *  R  P  L  L  S  V  I  H  S  K  P  *  W  Q  *  *  *  H  V  R  C  T  T  S  S  Y  E  R  N  C  I  A  T  K  S  S  T  N  W  S  N  F  F  F  S  Y  C  *  *  H  E  R  H  N  F  F  Q  S  Y  Y  Q  Y  N  N  W  H  C  N  V  R  I  R  I  R  S  R  S  S  T  S  I  S  S  I  *  K  *  *  *  *  *  *  Y  K  H  *  F  C  Y  W  *  Y  V  F  S  *  F  W  C  E  C  H  P  W  V  H  G  T  S  P  *  H  A  K  H  D  G  Y  Y  C  T  F  F  A  M  Y  *  F  *   </second_frame>
            <third_frame>   G  T  L  F  S  R :   R  D  S  F  I  T  H  R  A  F  C  D  A  L  T  E  E  S  S  R  T  I  I  P  P  P  N  S  S  T  S  H  H  L  N  L  H  T  L  Q  N  F  Q  M  K  Q  E  Q  Q  Q  Q  N  N  D  L  S  S  Q  L  F  I  Q  N  P  N  G  N  S  S  N  M  F  G  A  P  P  P  H  M  S  A  T  A  L  L  Q  K  A  A  Q  I  G  V  T  S  S  S  H  T  A  N  N  M  S  A  T  T  F  F  S  P  T  T  S  T  T  T  G  I  A  M  S  G  S  G  S  G  A  G  V  A  R  Q  Y  H  P  F  E  N  N  N  N  N  N  N  T  N  T  D  F  V  T  G  N  T  S  F  P  D  F  G  A  S  V  T  P  G  F  M  E  Q  V  H  D  M  Q  N  M  M  A  T  T  A  P  S  L  P  C  T  S  F  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="+"/>
                <serials PGL_serial="5" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="20612" stop="20628"/>
                    <exon start="21718" stop="22294"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>594</number_coding_nucleotides>
                  <number_encoded_amino_acids>198</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>GTLFSRRDSFITHRAFCDALTEESSRTIIPPPNSSTSHHLNLHTLQNFQMKQEQQQQNNDLSSQLFIQNPNGNSSNMFGAPPPHMSATALLQKAAQIGVTSSSHTANNMSATTFFSPTTSTTTGIAMSGSGSGAGVARQYHPFENNNNNNNTNTDFVTGNTSFPDFGASVTPGFMEQVHDMQNMMATTAPSLPCTSFD</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="39781" PGL_stop="43175"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="39781" e_stop="39898"/>
            <exon e_start="41770" e_stop="42246"/>
            <exon e_start="42835" e_stop="43175"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.964" acc_prob="0.996" e_score="0.983"/>
          <exon-intron don_prob="0.960" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="0.988"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.983">
            <gDNA_exon_boundary e_start="39781" e_stop="39898" e_length="118"/>
          </exon>
          <intron i_serial="1" don_prob="0.964" acc_prob="0.996">
            <gDNA_intron_boundary i_start="39899" i_stop="41769" i_length="1871"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="41770" e_stop="42246" e_length="477"/>
          </exon>
          <intron i_serial="2" don_prob="0.960" acc_prob="0.998">
            <gDNA_intron_boundary i_start="42247" i_stop="42834" i_length="588"/>
          </intron>
          <exon e_serial="3" e_score="0.988">
            <gDNA_exon_boundary e_start="42835" e_stop="43175" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="39781" stop="39898"/>
              <exon start="41770" stop="42246"/>
              <exon start="42835" stop="43175"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U584187" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TCTAAATGAGGAAGTGCAGCCGACCATGGAAACCAATACAAGATTTGCCGACGTTAAGGGTGTTGATGAGGCTAAAGGGGAGTTGGAAGAAATTGTTCACTATCTCCGAGACCCTAAG : CGATTCACTCGTCTTGGTGGCAAACTCCCAAAGGGTGTGCTACTTGTTGGTCCTCCTGGAACCGGTAAGACCATGTTGGCAAGAGCTATAGCAGGAGAAGCTGGGGTTCCCTTTTTCTCATGCAGTGGTAGTGAGTTTGAGGAAATGTTTGTGGGTGTTGGAGCCCGGAGAGTAAGAGACCTTTTTGCAGCTGCTAAGAAACGATCACCCTGCATTATATTCATTGATGAAATTGATGCCATTGGAGGAAGCCGTAACCCAAAGGACCAACAATATATGAGGATGACTTTGAATCAGTTGCTTGTTGAGCTGGATGGGTTCAAACAAAATGATGGAGTCATTGTGATTGCGGCCACTAACTTCCCAGAATCATTGGACAAGGCACTGGTGAGACCTGGACGATTCGATCGCAACATTGTTGTCCCAAATCCTGATGTTGAAGGTCGGAAGCAGATTCTGGAATCTCACATGTCAAAG : ATTGTCAAGGCAGATGATGTCGACCTTATGATCATTTCTAGGGGGACTCCTGGGTTTTCCGGGGCTGACCTTGCCAATTTGGTTAACATTGCTGCTGTGAAGGCTGCAATGGAAGGTGCTAAAGCTGTAAGCTTGGCTGATCTAGAGTATGCTAAGGACAAGATCATGATGGGAAGTGAGCGCAAATCAGCTTTCATATCCAAAGAGACGAGAAAGCTTACAGCCTACCATGAAGGTGGCCATGCTCTTGTGGCTATTCATACAGATGGGGCTCTTCCAGTGCACAAGGCAACCATTGTTCCACGTGGAATGGCTCTTGGTATGGTTGCTCAATTGCCAGA</gDNA_template>
            <first_frame> S  K  *  G  S  A  A  D  H  G  N  Q  Y  K  I  C  R  R  *  G  C  *  *  G  *  R  G  V  G  R  N  C  S  L  S  P  R  P  *   : A  I  H  S  S  W  W  Q  T  P  K  G  C  A  T  C  W  S  S  W  N  R  *  D  H  V  G  K  S  Y  S  R  R  S  W  G  S  L  F  L  M  Q  W  *  *  V  *  G  N  V  C  G  C  W  S  P  E  S  K  R  P  F  C  S  C  *  E  T  I  T  L  H  Y  I  H  *  *  N  *  C  H  W  R  K  P  *  P  K  G  P  T  I  Y  E  D  D  F  E  S  V  A  C  *  A  G  W  V  Q  T  K  *  W  S  H  C  D  C  G  H  *  L  P  R  I  I  G  Q  G  T  G  E  T  W  T  I  R  S  Q  H  C  C  P  K  S  *  C  *  R  S  E  A  D  S  G  I  S  H  V  K   : D  C  Q  G  R  *  C  R  P  Y  D  H  F  *  G  D  S  W  V  F  R  G  *  P  C  Q  F  G  *  H  C  C  C  E  G  C  N  G  R  C  *  S  C  K  L  G  *  S  R  V  C  *  G  Q  D  H  D  G  K  *  A  Q  I  S  F  H  I  Q  R  D  E  K  A  Y  S  L  P  *  R  W  P  C  S  C  G  Y  S  Y  R  W  G  S  S  S  A  Q  G  N  H  C  S  T  W  N  G  S  W  Y  G  C  S  I  A  R </first_frame>
            <second_frame>  L  N  E  E  V  Q  P  T  M  E  T  N  T  R  F  A  D  V  K  G  V  D  E  A  K  G  E  L  E  E  I  V  H  Y  L  R  D  P  K  :  R  F  T  R  L  G  G  K  L  P  K  G  V  L  L  V  G  P  P  G  T  G  K  T  M  L  A  R  A  I  A  G  E  A  G  V  P  F  F  S  C  S  G  S  E  F  E  E  M  F  V  G  V  G  A  R  R  V  R  D  L  F  A  A  A  K  K  R  S  P  C  I  I  F  I  D  E  I  D  A  I  G  G  S  R  N  P  K  D  Q  Q  Y  M  R  M  T  L  N  Q  L  L  V  E  L  D  G  F  K  Q  N  D  G  V  I  V  I  A  A  T  N  F  P  E  S  L  D  K  A  L  V  R  P  G  R  F  D  R  N  I  V  V  P  N  P  D  V  E  G  R  K  Q  I  L  E  S  H  M  S  K  :  I  V  K  A  D  D  V  D  L  M  I  I  S  R  G  T  P  G  F  S  G  A  D  L  A  N  L  V  N  I  A  A  V  K  A  A  M  E  G  A  K  A  V  S  L  A  D  L  E  Y  A  K  D  K  I  M  M  G  S  E  R  K  S  A  F  I  S  K  E  T  R  K  L  T  A  Y  H  E  G  G  H  A  L  V  A  I  H  T  D  G  A  L  P  V  H  K  A  T  I  V  P  R  G  M  A  L  G  M  V  A  Q  L  P   </second_frame>
            <third_frame>   *  M  R  K  C  S  R  P  W  K  P  I  Q  D  L  P  T  L  R  V  L  M  R  L  K  G  S  W  K  K  L  F  T  I  S  E  T  L  S :   D  S  L  V  L  V  A  N  S  Q  R  V  C  Y  L  L  V  L  L  E  P  V  R  P  C  W  Q  E  L  *  Q  E  K  L  G  F  P  F  S  H  A  V  V  V  S  L  R  K  C  L  W  V  L  E  P  G  E  *  E  T  F  L  Q  L  L  R  N  D  H  P  A  L  Y  S  L  M  K  L  M  P  L  E  E  A  V  T  Q  R  T  N  N  I  *  G  *  L  *  I  S  C  L  L  S  W  M  G  S  N  K  M  M  E  S  L  *  L  R  P  L  T  S  Q  N  H  W  T  R  H  W  *  D  L  D  D  S  I  A  T  L  L  S  Q  I  L  M  L  K  V  G  S  R  F  W  N  L  T  C  Q  R :   L  S  R  Q  M  M  S  T  L  *  S  F  L  G  G  L  L  G  F  P  G  L  T  L  P  I  W  L  T  L  L  L  *  R  L  Q  W  K  V  L  K  L  *  A  W  L  I  *  S  M  L  R  T  R  S  *  W  E  V  S  A  N  Q  L  S  Y  P  K  R  R  E  S  L  Q  P  T  M  K  V  A  M  L  L  W  L  F  I  Q  M  G  L  F  Q  C  T  R  Q  P  L  F  H  V  E  W  L  L  V  W  L  L  N  C  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="39782" stop="39898"/>
                    <exon start="41770" stop="42246"/>
                    <exon start="42835" stop="43173"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>933</number_coding_nucleotides>
                  <number_encoded_amino_acids>311</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNEEVQPTMETNTRFADVKGVDEAKGELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFAAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMRMTLNQLLVELDGFKQNDGVIVIAATNFPESLDKALVRPGRFDRNIVVPNPDVEGRKQILESHMSKIVKADDVDLMIISRGTPGFSGADLANLVNIAAVKAAMEGAKAVSLADLEYAKDKIMMGSERKSAFISKETRKLTAYHEGGHALVAIHTDGALPVHKATIVPRGMALGMVAQLP</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="62264" PGL_stop="62149"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="62264" e_stop="62149"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.931"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.931">
            <gDNA_exon_boundary e_start="62264" e_stop="62149" e_length="116"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="62264" stop="62149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U602841" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAATCCGTAGTGCTCCTAAACTTGTTACCATCTTCCTACAATACTTTAGCAACAACCATTTTACATGGTAAGGACTCTATTGAGTTGAATGATGTCACATCAGCCCTTTTGCTTAA</gDNA_template>
            <first_frame> K  S  V  V  L  L  N  L  L  P  S  S  Y  N  T  L  A  T  T  I  L  H  G  K  D  S  I  E  L  N  D  V  T  S  A  L  L  L   </first_frame>
            <second_frame>  N  P  *  C  S  *  T  C  Y  H  L  P  T  I  L  *  Q  Q  P  F  Y  M  V  R  T  L  L  S  *  M  M  S  H  Q  P  F  C  L  </second_frame>
            <third_frame>   I  R  S  A  P  K  L  V  T  I  F  L  Q  Y  F  S  N  N  H  F  T  W  *  G  L  Y  *  V  E  *  C  H  I  S  P  F  A  * </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0076I13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="66713" PGL_stop="74036"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="66713" e_stop="66965"/>
            <exon e_start="68224" e_stop="68342"/>
            <exon e_start="69173" e_stop="69255"/>
            <exon e_start="69903" e_stop="70024"/>
            <exon e_start="71119" e_stop="71283"/>
            <exon e_start="73153" e_stop="73246"/>
            <exon e_start="73452" e_stop="74036"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.828" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.000" acc_prob="0.960" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.986" acc_prob="0.998" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66713" e_stop="66965" e_length="253"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.968">
            <gDNA_intron_boundary i_start="66966" i_stop="68223" i_length="1258"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68224" e_stop="68342" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.828" acc_prob="1.000">
            <gDNA_intron_boundary i_start="68343" i_stop="69172" i_length="830"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69173" e_stop="69255" e_length="83"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.989">
            <gDNA_intron_boundary i_start="69256" i_stop="69902" i_length="647"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="69903" e_stop="70024" e_length="122"/>
          </exon>
          <intron i_serial="4" don_prob="0.000" acc_prob="0.960">
            <gDNA_intron_boundary i_start="70025" i_stop="71118" i_length="1094"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="71119" e_stop="71283" e_length="165"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="71284" i_stop="73152" i_length="1869"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="73153" e_stop="73246" e_length="94"/>
          </exon>
          <intron i_serial="6" don_prob="0.986" acc_prob="0.998">
            <gDNA_intron_boundary i_start="73247" i_stop="73451" i_length="205"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="73452" e_stop="74036" e_length="585"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66713" stop="66965"/>
              <exon start="68224" stop="68342"/>
              <exon start="69173" stop="69255"/>
              <exon start="69903" stop="70024"/>
              <exon start="71119" stop="71283"/>
              <exon start="73153" stop="73246"/>
              <exon start="73452" stop="74036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566712" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTCTTCTTTCCTTTTGTTGTATTTAGGATCAAATTAATCCAATATCATAATATTTATTTCATATAAAAATAAAAAATAATTTATTTTGTATTATTAGATTTTTTTAAGGATCATTTTGTGAAACATTATATTATTAGAATTTATTTATTACCTATCTTACAAGCATAATAATCTCTTCCTTACTAGGAAACTTGAAGAGACCAAAAGCTTTGTTCAGATGGCTCCGTCCCCTTCAATCCCTAATCTGCAAG : AAATTCGGCGTAAGTGTGTGACAGTACATAACAGTCATGGTGAGAAACTGGTGGGCGTGCTACATGAAACAAATTCCCTGGAGCTTGTAATTATCTGCCACGGTTTCAAATCATCGAAG : GATCGGATTCCCATGGTGAATCTTGCTGCTGCTTATGAGAAAGAAGGAATCAGTGCCTTCCGCTTTGACTTTGCAGGAAATGG : TGAAAGCGAAGGTTCCTTTCAGTATGGTAACTACCGCAGAGAAGCTGATGATCTTCGTGCCATAGTCGAGCACTTCCATAAGGAGGAGCGTTTCATAGCAGCAATAGTTGGTCATAGCAAAG : GAGGAAATGTTGTACTCTTGTATGCTTCGAACTACAAGGATGTACAAACTGTCATCAATATTTCTGGGCGCTTCAATCTTGAGAGAGGGATAGAGCATCGCTTGGGCAGAGACTTCAAAGAGAAGATAAAGCATAACGGTTTTATTGATGTTAGAAATAGAAAAG : GAAGGTTCAAGTATCGTGTCACTGAGGAAAGTTTGATGGACCGTCTAACAACTGATACTCGTGGATCATGTCAAAGTATCACCAATAACTGCAG : GGTATTGACGGTCCATGGTTCAATGGATGAAATGGTGCCAGTTGAAGATGCTATGGAATTTGCCAAGAATGTGTCAAATCATAAATTACAAATTATTGAAGGAGCTGATCATGAATTCACTTTGCATCAAGATGAGTTGTCTTCCGTTGTGGTTGCTTTTGTGAAAGCAGGTTTAGGTGGAAGAAACTACATGGCTATGCCATCTGAGTCATGCAAAAGAACAAGTGGATGTATACATTCACGATTTTGATCCAGTATCCTTATGTTGTGTACAAGTTAATTATTTACCAACAACAAGAAACAGACACCAAAACAGCTTGTAACTTTGTAAATGAGCATAGCCACTGTTGTAATCTCACCGCTAATTAAATGAAGTATTTGAAGGACCAAATACCAAAACTCGGGGCATCACATGAAATTTATAGGTACTGCAGAAGATGGGGAAGAAAACAAGAAAAGGATATTAATGTAGTAATGGCGGTTGTTTTCTTTCCTATTTTTGCTGGAAAGAACCATCATTCAACATTCTTTGAACTTCTGTACAATTTTATATCAAACATTGATTTATACAAGTAGTGAAATGTT</gDNA_template>
            <first_frame> T  S  S  F  L  L  L  Y  L  G  S  N  *  S  N  I  I  I  F  I  S  Y  K  N  K  K  *  F  I  L  Y  Y  *  I  F  L  R  I  I  L  *  N  I  I  L  L  E  F  I  Y  Y  L  S  Y  K  H  N  N  L  F  L  T  R  K  L  E  E  T  K  S  F  V  Q  M  A  P  S  P  S  I  P  N  L  Q   : E  I  R  R  K  C  V  T  V  H  N  S  H  G  E  K  L  V  G  V  L  H  E  T  N  S  L  E  L  V  I  I  C  H  G  F  K  S  S  K  :  D  R  I  P  M  V  N  L  A  A  A  Y  E  K  E  G  I  S  A  F  R  F  D  F  A  G  N  G :   E  S  E  G  S  F  Q  Y  G  N  Y  R  R  E  A  D  D  L  R  A  I  V  E  H  F  H  K  E  E  R  F  I  A  A  I  V  G  H  S  K   : G  G  N  V  V  L  L  Y  A  S  N  Y  K  D  V  Q  T  V  I  N  I  S  G  R  F  N  L  E  R  G  I  E  H  R  L  G  R  D  F  K  E  K  I  K  H  N  G  F  I  D  V  R  N  R  K   : G  R  F  K  Y  R  V  T  E  E  S  L  M  D  R  L  T  T  D  T  R  G  S  C  Q  S  I  T  N  N  C  R :   V  L  T  V  H  G  S  M  D  E  M  V  P  V  E  D  A  M  E  F  A  K  N  V  S  N  H  K  L  Q  I  I  E  G  A  D  H  E  F  T  L  H  Q  D  E  L  S  S  V  V  V  A  F  V  K  A  G  L  G  G  R  N  Y  M  A  M  P  S  E  S  C  K  R  T  S  G  C  I  H  S  R  F  *  S  S  I  L  M  L  C  T  S  *  L  F  T  N  N  K  K  Q  T  P  K  Q  L  V  T  L  *  M  S  I  A  T  V  V  I  S  P  L  I  K  *  S  I  *  R  T  K  Y  Q  N  S  G  H  H  M  K  F  I  G  T  A  E  D  G  E  E  N  K  K  R  I  L  M  *  *  W  R  L  F  S  F  L  F  L  L  E  R  T  I  I  Q  H  S  L  N  F  C  T  I  L  Y  Q  T  L  I  Y  T  S  S  E  M   </first_frame>
            <second_frame>  P  L  L  S  F  C  C  I  *  D  Q  I  N  P  I  S  *  Y  L  F  H  I  K  I  K  N  N  L  F  C  I  I  R  F  F  *  G  S  F  C  E  T  L  Y  Y  *  N  L  F  I  T  Y  L  T  S  I  I  I  S  S  L  L  G  N  L  K  R  P  K  A  L  F  R  W  L  R  P  L  Q  S  L  I  C  K  :  K  F  G  V  S  V  *  Q  Y  I  T  V  M  V  R  N  W  W  A  C  Y  M  K  Q  I  P  W  S  L  *  L  S  A  T  V  S  N  H  R  R :   I  G  F  P  W  *  I  L  L  L  L  M  R  K  K  E  S  V  P  S  A  L  T  L  Q  E  M   : V  K  A  K  V  P  F  S  M  V  T  T  A  E  K  L  M  I  F  V  P  *  S  S  T  S  I  R  R  S  V  S  *  Q  Q  *  L  V  I  A  K  :  E  E  M  L  Y  S  C  M  L  R  T  T  R  M  Y  K  L  S  S  I  F  L  G  A  S  I  L  R  E  G  *  S  I  A  W  A  E  T  S  K  R  R  *  S  I  T  V  L  L  M  L  E  I  E  K  :  E  G  S  S  I  V  S  L  R  K  V  *  W  T  V  *  Q  L  I  L  V  D  H  V  K  V  S  P  I  T  A   : G  Y  *  R  S  M  V  Q  W  M  K  W  C  Q  L  K  M  L  W  N  L  P  R  M  C  Q  I  I  N  Y  K  L  L  K  E  L  I  M  N  S  L  C  I  K  M  S  C  L  P  L  W  L  L  L  *  K  Q  V  *  V  E  E  T  T  W  L  C  H  L  S  H  A  K  E  Q  V  D  V  Y  I  H  D  F  D  P  V  S  L  C  C  V  Q  V  N  Y  L  P  T  T  R  N  R  H  Q  N  S  L  *  L  C  K  *  A  *  P  L  L  *  S  H  R  *  L  N  E  V  F  E  G  P  N  T  K  T  R  G  I  T  *  N  L  *  V  L  Q  K  M  G  K  K  T  R  K  G  Y  *  C  S  N  G  G  C  F  L  S  Y  F  C  W  K  E  P  S  F  N  I  L  *  T  S  V  Q  F  Y  I  K  H  *  F  I  Q  V  V  K  C  </second_frame>
            <third_frame>   L  F  F  P  F  V  V  F  R  I  K  L  I  Q  Y  H  N  I  Y  F  I  *  K  *  K  I  I  Y  F  V  L  L  D  F  F  K  D  H  F  V  K  H  Y  I  I  R  I  Y  L  L  P  I  L  Q  A  *  *  S  L  P  Y  *  E  T  *  R  D  Q  K  L  C  S  D  G  S  V  P  F  N  P  *  S  A  R :   N  S  A  *  V  C  D  S  T  *  Q  S  W  *  E  T  G  G  R  A  T  *  N  K  F  P  G  A  C  N  Y  L  P  R  F  Q  I  I  E   : G  S  D  S  H  G  E  S  C  C  C  L  *  E  R  R  N  Q  C  L  P  L  *  L  C  R  K  W  :  *  K  R  R  F  L  S  V  W  *  L  P  Q  R  S  *  *  S  S  C  H  S  R  A  L  P  *  G  G  A  F  H  S  S  N  S  W  S  *  Q  R :   R  K  C  C  T  L  V  C  F  E  L  Q  G  C  T  N  C  H  Q  Y  F  W  A  L  Q  S  *  E  R  D  R  A  S  L  G  Q  R  L  Q  R  E  D  K  A  *  R  F  Y  *  C  *  K  *  K  R :   K  V  Q  V  S  C  H  *  G  K  F  D  G  P  S  N  N  *  Y  S  W  I  M  S  K  Y  H  Q  *  L  Q  :  G  I  D  G  P  W  F  N  G  *  N  G  A  S  *  R  C  Y  G  I  C  Q  E  C  V  K  S  *  I  T  N  Y  *  R  S  *  S  *  I  H  F  A  S  R  *  V  V  F  R  C  G  C  F  C  E  S  R  F  R  W  K  K  L  H  G  Y  A  I  *  V  M  Q  K  N  K  W  M  Y  T  F  T  I  L  I  Q  Y  P  Y  V  V  Y  K  L  I  I  Y  Q  Q  Q  E  T  D  T  K  T  A  C  N  F  V  N  E  H  S  H  C  C  N  L  T  A  N  *  M  K  Y  L  K  D  Q  I  P  K  L  G  A  S  H  E  I  Y  R  Y  C  R  R  W  G  R  K  Q  E  K  D  I  N  V  V  M  A  V  V  F  F  P  I  F  A  G  K  N  H  H  S  T  F  F  E  L  L  Y  N  F  I  S  N  I  D  L  Y  K  *  *  N  V </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66836" stop="66965"/>
                    <exon start="68224" stop="68342"/>
                    <exon start="69173" stop="69255"/>
                    <exon start="69903" stop="70024"/>
                    <exon start="71119" stop="71283"/>
                    <exon start="73153" stop="73246"/>
                    <exon start="73452" stop="73701"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>960</number_coding_nucleotides>
                  <number_encoded_amino_acids>320</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NIILLEFIYYLSYKHNNLFLTRKLEETKSFVQMAPSPSIPNLQEIRRKCVTVHNSHGEKLVGVLHETNSLELVIICHGFKSSKDRIPMVNLAAAYEKEGISAFRFDFAGNGESEGSFQYGNYRREADDLRAIVEHFHKEERFIAAIVGHSKGGNVVLLYASNYKDVQTVINISGRFNLERGIEHRLGRDFKEKIKHNGFIDVRNRKGRFKYRVTEESLMDRLTTDTRGSCQSITNNCRVLTVHGSMDEMVPVEDAMEFAKNVSNHKLQIIEGADHEFTLHQDELSSVVVAFVKAGLGGRNYMAMPSESCKRTSGCIHSRF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="73821" stop="74027"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>MKYLKDQIPKLGASHEIYRYCRRWGRKQEKDINVVMAVVFFPIFAGKNHHSTFFELLYNFISNIDLYK*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="66921" e_stop="66965"/>
            <exon e_start="68224" e_stop="68342"/>
            <exon e_start="69173" e_stop="69663"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.828" acc_prob="1.000" e_score="0.983"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="66921" e_stop="66965" e_length="45"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.968">
            <gDNA_intron_boundary i_start="66966" i_stop="68223" i_length="1258"/>
          </intron>
          <exon e_serial="2" e_score="0.983">
            <gDNA_exon_boundary e_start="68224" e_stop="68342" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.828" acc_prob="1.000">
            <gDNA_intron_boundary i_start="68343" i_stop="69172" i_length="830"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69173" e_stop="69663" e_length="491"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66921" stop="66965"/>
              <exon start="68224" stop="68342"/>
              <exon start="69173" stop="69663"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U596638" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GCTTTGTTCAGATGGCTCCGTCCCCTTCAATCCCTAATCTGCAAG : AAATTCGGCGTAAGTGTGTGACAGTACATAACAGTCATGGTGAGAAACTGGTGGGCGTGCTACATGAAACAAATTCCCTGGAGCTTGTAATTATCTGCCACGGTTTCAAATCATCGAAG : GATCGGATTCCCATGGTGAATCTTGCTGCTGCTTATGAGAAAGAAGGAATCAGTGCCTTCCGCTTTGACTTTGCAGGAAATGGGTATGTTCAAACACAAAAGCCAATATAGAAACCTCTAGATTAGCAAATAAATGGAAAGGGAGTGCTGCTCCCAGTGAACTTTGTTCTTCTCGTATTCTTGATCTGTGAACTTAGATTTACTCAAATGAATGGTTATTGAATTTTCTCCTTTTTGGGAAGGTGAGGAATATCTACTTGGAGTATTATAAACTTGCAAATTCTTTAGGTTATTGGGAGAACTAAATATATATGTATCTGGATTGCTGCTGCATATGCGTATGGACCAAAATTACATTTATTTAACTTCGATACTTTGTTTTGTTCTCTTCTTAACTTTTTCCTTTTCACTTGCAAGTATTAGGAGCTCCTCGCATACTTGTCTAGTGTTGTTTCATATACACTATATTGGCCTTAAAGTAGCTCTAGTTG</gDNA_template>
            <first_frame> A  L  F  R  W  L  R  P  L  Q  S  L  I  C  K  :  K  F  G  V  S  V  *  Q  Y  I  T  V  M  V  R  N  W  W  A  C  Y  M  K  Q  I  P  W  S  L  *  L  S  A  T  V  S  N  H  R  R :   I  G  F  P  W  *  I  L  L  L  L  M  R  K  K  E  S  V  P  S  A  L  T  L  Q  E  M  G  M  F  K  H  K  S  Q  Y  R  N  L  *  I  S  K  *  M  E  R  E  C  C  S  Q  *  T  L  F  F  S  Y  S  *  S  V  N  L  D  L  L  K  *  M  V  I  E  F  S  P  F  W  E  G  E  E  Y  L  L  G  V  L  *  T  C  K  F  F  R  L  L  G  E  L  N  I  Y  V  S  G  L  L  L  H  M  R  M  D  Q  N  Y  I  Y  L  T  S  I  L  C  F  V  L  F  L  T  F  S  F  S  L  A  S  I  R  S  S  S  H  T  C  L  V  L  F  H  I  H  Y  I  G  L  K  V  A  L  V  </first_frame>
            <second_frame>  L  C  S  D  G  S  V  P  F  N  P  *  S  A  R :   N  S  A  *  V  C  D  S  T  *  Q  S  W  *  E  T  G  G  R  A  T  *  N  K  F  P  G  A  C  N  Y  L  P  R  F  Q  I  I  E   : G  S  D  S  H  G  E  S  C  C  C  L  *  E  R  R  N  Q  C  L  P  L  *  L  C  R  K  W  V  C  S  N  T  K  A  N  I  E  T  S  R  L  A  N  K  W  K  G  S  A  A  P  S  E  L  C  S  S  R  I  L  D  L  *  T  *  I  Y  S  N  E  W  L  L  N  F  L  L  F  G  K  V  R  N  I  Y  L  E  Y  Y  K  L  A  N  S  L  G  Y  W  E  N  *  I  Y  M  Y  L  D  C  C  C  I  C  V  W  T  K  I  T  F  I  *  L  R  Y  F  V  L  F  S  S  *  L  F  P  F  H  L  Q  V  L  G  A  P  R  I  L  V  *  C  C  F  I  Y  T  I  L  A  L  K  *  L  *  L </second_frame>
            <third_frame>   F  V  Q  M  A  P  S  P  S  I  P  N  L  Q   : E  I  R  R  K  C  V  T  V  H  N  S  H  G  E  K  L  V  G  V  L  H  E  T  N  S  L  E  L  V  I  I  C  H  G  F  K  S  S  K  :  D  R  I  P  M  V  N  L  A  A  A  Y  E  K  E  G  I  S  A  F  R  F  D  F  A  G  N  G  Y  V  Q  T  Q  K  P  I  *  K  P  L  D  *  Q  I  N  G  K  G  V  L  L  P  V  N  F  V  L  L  V  F  L  I  C  E  L  R  F  T  Q  M  N  G  Y  *  I  F  S  F  L  G  R  *  G  I  S  T  W  S  I  I  N  L  Q  I  L  *  V  I  G  R  T  K  Y  I  C  I  W  I  A  A  A  Y  A  Y  G  P  K  L  H  L  F  N  F  D  T  L  F  C  S  L  L  N  F  F  L  F  T  C  K  Y  *  E  L  L  A  Y  L  S  S  V  V  S  Y  T  L  Y  W  P  *  S  S  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66923" stop="66965"/>
                    <exon start="68224" stop="68342"/>
                    <exon start="69173" stop="69283"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>270</number_coding_nucleotides>
                  <number_encoded_amino_acids>90</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>FVQMAPSPSIPNLQEIRRKCVTVHNSHGEKLVGVLHETNSLELVIICHGFKSSKDRIPMVNLAAAYEKEGISAFRFDFAGNGYVQTQKPI*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="69444" stop="69662"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>219</number_coding_nucleotides>
                  <number_encoded_amino_acids>73</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TCKFFRLLGELNIYVSGLLLHMRMDQNYIYLTSILCFVLFLTFSFSLASIRSSSHTCLVLFHIHYIGLKVALV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="66905" e_stop="66965"/>
            <exon e_start="68224" e_stop="68342"/>
            <exon e_start="69173" e_stop="69255"/>
            <exon e_start="69903" e_stop="71283"/>
            <exon e_start="73153" e_stop="73246"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.968" e_score="0.967"/>
          <exon-intron don_prob="0.828" acc_prob="1.000" e_score="1.000"/>
          <exon-intron don_prob="0.977" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.999"/>
          <exon-only e_score="0.989"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.967">
            <gDNA_exon_boundary e_start="66905" e_stop="66965" e_length="61"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.968">
            <gDNA_intron_boundary i_start="66966" i_stop="68223" i_length="1258"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="68224" e_stop="68342" e_length="119"/>
          </exon>
          <intron i_serial="2" don_prob="0.828" acc_prob="1.000">
            <gDNA_intron_boundary i_start="68343" i_stop="69172" i_length="830"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="69173" e_stop="69255" e_length="83"/>
          </exon>
          <intron i_serial="3" don_prob="0.977" acc_prob="0.989">
            <gDNA_intron_boundary i_start="69256" i_stop="69902" i_length="647"/>
          </intron>
          <exon e_serial="4" e_score="0.999">
            <gDNA_exon_boundary e_start="69903" e_stop="71283" e_length="1381"/>
          </exon>
          <intron i_serial="4" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="71284" i_stop="73152" i_length="1869"/>
          </intron>
          <exon e_serial="5" e_score="0.989">
            <gDNA_exon_boundary e_start="73153" e_stop="73246" e_length="94"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="66905" stop="66965"/>
              <exon start="68224" stop="68342"/>
              <exon start="69173" stop="69255"/>
              <exon start="69903" stop="71283"/>
              <exon start="73153" stop="73246"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U566711" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CTTGAAGAGACCAAAAGCTTTGTTCAGATGGCTCCGTCCCCTTCAATCCCTAATCTGCAAG : AAATTCGGCGTAAGTGTGTGACAGTACATAACAGTCATGGTGAGAAACTGGTGGGCGTGCTACATGAAACAAATTCCCTGGAGCTTGTAATTATCTGCCACGGTTTCAAATCATCGAAG : GATCGGATTCCCATGGTGAATCTTGCTGCTGCTTATGAGAAAGAAGGAATCAGTGCCTTCCGCTTTGACTTTGCAGGAAATGG : TGAAAGCGAAGGTTCCTTTCAGTATGGTAACTACCGCAGAGAAGCTGATGATCTTCGTGCCATAGTCGAGCACTTCCATAAGGAGGAGCGTTTCATAGCAGCAATAGTTGGTCATAGCAAAGGTTTAGCCTTTGAAAGCTAACTTATGTCTGATCTTGGGAAGATACGCCGTGTTTCTCTTTTCCTTTCCCCATTCCTAGTTCTCTTGCTAGGGGTGTGAATGGTGGTGTTTGGAGGATTACAGTACCACTATACTGGAACAGTACATGCAGTCTAACTGATGTTTCGACCAGTAGCAATGCCACTTTTCGCTGCTGTTTGATTCGAGTCATTGATAGATAGAAGCTTTCTTGTCATTACTGCTTATCATACTTGATGCGTTCACGTAGGAATTTTACATTTTGTCCTTGCAATTTATGTTAAATCTGCTGAGTAAGTTATGTTTGAGTGCATAAATGAATACCCTTTCTTTGTTAGTAGGTAAGTTTTTCTCATTAGGTCATCAATATTTTCCTGGATTGGGATTCGTAAATATGTTAATAGATTCTTGATCTGTATCTTCCATTTTTGGGTGTGTGTGTTATGTCTTTGTTGGGGGTTCTTGTTTTGGTTCAGTACTTCAGGGATTATTAACAGTACTTTTTGCAAGAATATGTGTGGGTTGAAAATTGTGTGTTCATACTCGAACTTTTGAGTGTTCTTATTTCATTATGAGCTTTTTAAACATTGAAGAAGGTTTTCCTTTTCAAGTAAATAGTTCTTTGTTAAAATCAAATTATGATTGCTGATTTAGCAATTTTTGGTTTACTGTTATGTTCATTTTAAATTTAACTTTAAAAGGTAGCAGTAAATGTTGACAACCTTCATGTTTTACCCCAGCATTATATGGTCCTGCTAACTGCTGATGTTTATGATGGTATTTTCTCTTGTCCATATTCTACTTAATTTCTTATCAGTAAGAGTTGCACAAGTACTTTGAATTGTCATGATAGTGATGTATTGATCTCACAGGAGTCGGGACACAGTCAAATTTACAAGGAAAGATAGTATCTTCTTGTGCTATAGTTTGCATTGTATCCTCTCTTCACATAATCAACACATACTGCACCTCAAATTAAGTTATAGTAACTATCTCCAGCTTATTTTTCTGCATGCATATCGTATGACCTCTAATGTCCCCGCTGAAGTGTATTTTTTTGTGATAAATTACCTACAGGAGGAAATGTTGTACTCTTGTATGCTTCGAACTACAAGGATGTACAAACTGTCATCAATATTTCTGGGCGCTTCAATCTTGAGAGAGGGATAGAGCATCGCTTGGGCAGAGACTTCAAAGAGAAGATAAAGCATAACGGTTTTATTGATGTTAGAAATAGAAAAG : GAAGGTTCAAGTATCGTGTCACTGAGGAAAGTTTGATGGACCGTCTAACAACTGATACTCGTGGATCATGTCAAAGTATCACCAATAACTGCAG</gDNA_template>
            <first_frame> L  E  E  T  K  S  F  V  Q  M  A  P  S  P  S  I  P  N  L  Q   : E  I  R  R  K  C  V  T  V  H  N  S  H  G  E  K  L  V  G  V  L  H  E  T  N  S  L  E  L  V  I  I  C  H  G  F  K  S  S  K  :  D  R  I  P  M  V  N  L  A  A  A  Y  E  K  E  G  I  S  A  F  R  F  D  F  A  G  N  G :   E  S  E  G  S  F  Q  Y  G  N  Y  R  R  E  A  D  D  L  R  A  I  V  E  H  F  H  K  E  E  R  F  I  A  A  I  V  G  H  S  K  G  L  A  F  E  S  *  L  M  S  D  L  G  K  I  R  R  V  S  L  F  L  S  P  F  L  V  L  L  L  G  V  *  M  V  V  F  G  G  L  Q  Y  H  Y  T  G  T  V  H  A  V  *  L  M  F  R  P  V  A  M  P  L  F  A  A  V  *  F  E  S  L  I  D  R  S  F  L  V  I  T  A  Y  H  T  *  C  V  H  V  G  I  L  H  F  V  L  A  I  Y  V  K  S  A  E  *  V  M  F  E  C  I  N  E  Y  P  F  F  V  S  R  *  V  F  L  I  R  S  S  I  F  S  W  I  G  I  R  K  Y  V  N  R  F  L  I  C  I  F  H  F  W  V  C  V  L  C  L  C  W  G  F  L  F  W  F  S  T  S  G  I  I  N  S  T  F  C  K  N  M  C  G  L  K  I  V  C  S  Y  S  N  F  *  V  F  L  F  H  Y  E  L  F  K  H  *  R  R  F  S  F  S  S  K  *  F  F  V  K  I  K  L  *  L  L  I  *  Q  F  L  V  Y  C  Y  V  H  F  K  F  N  F  K  R  *  Q  *  M  L  T  T  F  M  F  Y  P  S  I  I  W  S  C  *  L  L  M  F  M  M  V  F  S  L  V  H  I  L  L  N  F  L  S  V  R  V  A  Q  V  L  *  I  V  M  I  V  M  Y  *  S  H  R  S  R  D  T  V  K  F  T  R  K  D  S  I  F  L  C  Y  S  L  H  C  I  L  S  S  H  N  Q  H  I  L  H  L  K  L  S  Y  S  N  Y  L  Q  L  I  F  L  H  A  Y  R  M  T  S  N  V  P  A  E  V  Y  F  F  V  I  N  Y  L  Q  E  E  M  L  Y  S  C  M  L  R  T  T  R  M  Y  K  L  S  S  I  F  L  G  A  S  I  L  R  E  G  *  S  I  A  W  A  E  T  S  K  R  R  *  S  I  T  V  L  L  M  L  E  I  E  K  :  E  G  S  S  I  V  S  L  R  K  V  *  W  T  V  *  Q  L  I  L  V  D  H  V  K  V  S  P  I  T  A  </first_frame>
            <second_frame>  L  K  R  P  K  A  L  F  R  W  L  R  P  L  Q  S  L  I  C  K  :  K  F  G  V  S  V  *  Q  Y  I  T  V  M  V  R  N  W  W  A  C  Y  M  K  Q  I  P  W  S  L  *  L  S  A  T  V  S  N  H  R  R :   I  G  F  P  W  *  I  L  L  L  L  M  R  K  K  E  S  V  P  S  A  L  T  L  Q  E  M   : V  K  A  K  V  P  F  S  M  V  T  T  A  E  K  L  M  I  F  V  P  *  S  S  T  S  I  R  R  S  V  S  *  Q  Q  *  L  V  I  A  K  V  *  P  L  K  A  N  L  C  L  I  L  G  R  Y  A  V  F  L  F  S  F  P  H  S  *  F  S  C  *  G  C  E  W  W  C  L  E  D  Y  S  T  T  I  L  E  Q  Y  M  Q  S  N  *  C  F  D  Q  *  Q  C  H  F  S  L  L  F  D  S  S  H  *  *  I  E  A  F  L  S  L  L  L  I  I  L  D  A  F  T  *  E  F  Y  I  L  S  L  Q  F  M  L  N  L  L  S  K  L  C  L  S  A  *  M  N  T  L  S  L  L  V  G  K  F  F  S  L  G  H  Q  Y  F  P  G  L  G  F  V  N  M  L  I  D  S  *  S  V  S  S  I  F  G  C  V  C  Y  V  F  V  G  G  S  C  F  G  S  V  L  Q  G  L  L  T  V  L  F  A  R  I  C  V  G  *  K  L  C  V  H  T  R  T  F  E  C  S  Y  F  I  M  S  F  L  N  I  E  E  G  F  P  F  Q  V  N  S  S  L  L  K  S  N  Y  D  C  *  F  S  N  F  W  F  T  V  M  F  I  L  N  L  T  L  K  G  S  S  K  C  *  Q  P  S  C  F  T  P  A  L  Y  G  P  A  N  C  *  C  L  *  W  Y  F  L  L  S  I  F  Y  L  I  S  Y  Q  *  E  L  H  K  Y  F  E  L  S  *  *  *  C  I  D  L  T  G  V  G  T  Q  S  N  L  Q  G  K  I  V  S  S  C  A  I  V  C  I  V  S  S  L  H  I  I  N  T  Y  C  T  S  N  *  V  I  V  T  I  S  S  L  F  F  C  M  H  I  V  *  P  L  M  S  P  L  K  C  I  F  L  *  *  I  T  Y  R  R  K  C  C  T  L  V  C  F  E  L  Q  G  C  T  N  C  H  Q  Y  F  W  A  L  Q  S  *  E  R  D  R  A  S  L  G  Q  R  L  Q  R  E  D  K  A  *  R  F  Y  *  C  *  K  *  K  R :   K  V  Q  V  S  C  H  *  G  K  F  D  G  P  S  N  N  *  Y  S  W  I  M  S  K  Y  H  Q  *  L  Q </second_frame>
            <third_frame>   *  R  D  Q  K  L  C  S  D  G  S  V  P  F  N  P  *  S  A  R :   N  S  A  *  V  C  D  S  T  *  Q  S  W  *  E  T  G  G  R  A  T  *  N  K  F  P  G  A  C  N  Y  L  P  R  F  Q  I  I  E   : G  S  D  S  H  G  E  S  C  C  C  L  *  E  R  R  N  Q  C  L  P  L  *  L  C  R  K  W  :  *  K  R  R  F  L  S  V  W  *  L  P  Q  R  S  *  *  S  S  C  H  S  R  A  L  P  *  G  G  A  F  H  S  S  N  S  W  S  *  Q  R  F  S  L  *  K  L  T  Y  V  *  S  W  E  D  T  P  C  F  S  F  P  F  P  I  P  S  S  L  A  R  G  V  N  G  G  V  W  R  I  T  V  P  L  Y  W  N  S  T  C  S  L  T  D  V  S  T  S  S  N  A  T  F  R  C  C  L  I  R  V  I  D  R  *  K  L  S  C  H  Y  C  L  S  Y  L  M  R  S  R  R  N  F  T  F  C  P  C  N  L  C  *  I  C  *  V  S  Y  V  *  V  H  K  *  I  P  F  L  C  *  *  V  S  F  S  H  *  V  I  N  I  F  L  D  W  D  S  *  I  C  *  *  I  L  D  L  Y  L  P  F  L  G  V  C  V  M  S  L  L  G  V  L  V  L  V  Q  Y  F  R  D  Y  *  Q  Y  F  L  Q  E  Y  V  W  V  E  N  C  V  F  I  L  E  L  L  S  V  L  I  S  L  *  A  F  *  T  L  K  K  V  F  L  F  K  *  I  V  L  C  *  N  Q  I  M  I  A  D  L  A  I  F  G  L  L  L  C  S  F  *  I  *  L  *  K  V  A  V  N  V  D  N  L  H  V  L  P  Q  H  Y  M  V  L  L  T  A  D  V  Y  D  G  I  F  S  C  P  Y  S  T  *  F  L  I  S  K  S  C  T  S  T  L  N  C  H  D  S  D  V  L  I  S  Q  E  S  G  H  S  Q  I  Y  K  E  R  *  Y  L  L  V  L  *  F  A  L  Y  P  L  F  T  *  S  T  H  T  A  P  Q  I  K  L  *  *  L  S  P  A  Y  F  S  A  C  I  S  Y  D  L  *  C  P  R  *  S  V  F  F  C  D  K  L  P  T  G  G  N  V  V  L  L  Y  A  S  N  Y  K  D  V  Q  T  V  I  N  I  S  G  R  F  N  L  E  R  G  I  E  H  R  L  G  R  D  F  K  E  K  I  K  H  N  G  F  I  D  V  R  N  R  K   : G  R  F  K  Y  R  V  T  E  E  S  L  M  D  R  L  T  T  D  T  R  G  S  C  Q  S  I  T  N  N  C   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="66905" stop="66965"/>
                    <exon start="68224" stop="68342"/>
                    <exon start="69173" stop="69255"/>
                    <exon start="69903" stop="70044"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>402</number_coding_nucleotides>
                  <number_encoded_amino_acids>134</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LEETKSFVQMAPSPSIPNLQEIRRKCVTVHNSHGEKLVGVLHETNSLELVIICHGFKSSKDRIPMVNLAAAYEKEGISAFRFDFAGNGESEGSFQYGNYRREADDLRAIVEHFHKEERFIAAIVGHSKGLAFES*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70906" stop="71211"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>303</number_coding_nucleotides>
                  <number_encoded_amino_acids>101</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHRSRDTVKFTRKDSIFLCYSLHCILSSHNQHILHLKLSYSNYLQLIFLHAYRMTSNVPAEVYFFVINYLQEEMLYSCMLRTTRMYKLSSIFLGASILREG*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="+"/>
                <serials PGL_serial="8" AGS_serial="3" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="70387" stop="70596"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VFLIRSSIFSWIGIRKYVNRFLICIFHFWVCVLCLCWGFLFWFSTSGIINSTFCKNMCGLKIVCSYSNF*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="9" PGL_strand="-" PGL_start="78487" PGL_stop="74211"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="78487" e_stop="78426"/>
            <exon e_start="76810" e_stop="75731"/>
            <exon e_start="74893" e_stop="74211"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.983" acc_prob="0.968" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.996" e_score="0.999"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="78487" e_stop="78426" e_length="62"/>
          </exon>
          <intron i_serial="1" don_prob="0.983" acc_prob="0.968">
            <gDNA_intron_boundary i_start="78425" i_stop="76811" i_length="1615"/>
          </intron>
          <exon e_serial="2" e_score="0.999">
            <gDNA_exon_boundary e_start="76810" e_stop="75731" e_length="1080"/>
          </exon>
          <intron i_serial="2" don_prob="0.999" acc_prob="0.996">
            <gDNA_intron_boundary i_start="75730" i_stop="74894" i_length="837"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="74893" e_stop="74211" e_length="683"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78487" stop="78426"/>
              <exon start="76810" stop="75731"/>
              <exon start="74893" stop="74211"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U580292" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="9" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGATAAATGAAAACCTTTCTCACTCTCTTGTAAGGATTTTATGTCTAACAAGCATCACCAG : GTTTAAGAAAATTGGTAGGCTCATATCGAGGCGGCTATCATGGCACATTTACTTTCTACTACATGTTCTTTAGATGTCTCTTCCAGCAAAAAGCTGCATTTCAAGTCAATTAACCAATGCTCTACTCCTAATCCAACATGTTTTAATATGGGAATTTCTTTCTCACCCTTGAAGCTAAGTTTGCAAAGCAAAAGGTCTGCAAAATATGTGATCAGAGCTTCAGCTGTTTCCATGAGCCAAGAAGCCAGAACACAGAATGACTCTGGTTCTCAACAGACCACTGATGGAGCATCCACTAGGAAGAAGGTCATGGTCATTGGTGGTGATGGCTATTGTGGCTGGGCTACTGCTCTCCACCTATCCAACAAGGGATATGAAGTTGCCATTGTTGACAACCTTATCCGTCGATTATTTGACGACCAGCTTGGTCTAGATTCTCTAACACCCATCTCATCTATTCATAACCGCATAAGGCGTTGGAAATCTCTCACAGGAAAAGATATTCAACTGTTTGTTGGTGATATATGTGAGTTTGAGTTCTTGGCAGAAGCCTTCAAATCCTTTGAACCTGATGCTGTAGTCCATTTTGGAGAGCAGAGGTCTGCCCCTTATTCTATGATTGATAGGTCAAGAGCTATTTATACCCAACATAATAATGTGATAGGGACACTTAATGTACTATTTGCCATAAAGGAGTTTAGGGAAGAGTGTCATTTGGTCAAACTCGGGACCATGGGGGAATATGGAACCCCTAATATAGATATTGAAGAAGGTTATATAACTATTACTCATAACGGAAGAACAGATACTCTTCCTTATCCCAAACAAGCAAGCTCCTTCTATCATTTGAGTAAAGTCCATGATTCCCACAACATAGCCTTCACTTGCAAGGCGTGGGGAATCAGAGCTACCGACCTGAATCAGGGAGTTGTATATGGGGTGAGGACTGATGAAACTGCAATACATGAGGATCTGGTTAACAGACTTGATTATGATGGTGTATTTGGAACTGCACTAAATCGTTTCTGTGTTCAGGCTGCTGTTGGACATCCACTAACGGTGTATGGTAAAGGAGGGCAG : ACCAGGGGATATTTGGATATCAGAGATACAGTTCAATGTGTTGAAATTGCAATTGCCAATCCAGCAAAACCAGGAGAGTTCCGGGTTTTCAACCAATTCACAGAGCAGTTTTCAGTAAATGAGCTTGCAGCCCTTGTCACCAAGGCAGGGCAAAAACTTGGCCTTGAGGTGAAGGCCATATCAGTGCCCAATCCAAGAGTAGAAGCAGAGGAACACTACTACAATGCCAAACATACTAAACTTATTGAGCTGGGACTACAACCTCACCTTCTTTCTGATTCTCTTCTCGACTCTCTATTGAACTTTGCTGTTCAATATAAGGATCGTGTCGACACAAAGCAGATAATGCCTAGTGTTTCCTGGAAAAAAATTGGCGCGAAGCCAAAGACTGTTGCAGCATAAATCACTTAGACAAGCTATAGAGACTTGAGACTGGGAGTTCTTGTATGTCATTTTTATATAGGAGCTATAGTATTTTACAATGCCTTGCACAATTTTATGTTGTAACTTTGGGAAGTATTTGTTGTATTCCGAAGCTTGTGAAGGTTGTGGATGTAGTTTTTGTTTGAGAAAATACTCGAGGTAGTCGTGACCTGTCTCAAGCCTGAAACTTGTGTGATTTACTTGTCAATTTAGTTTTGGCTACACAGAAGTGTTCCCGGATATCTTCCTCATTGGACAGA</gDNA_template>
            <first_frame> Q  I  N  E  N  L  S  H  S  L  V  R  I  L  C  L  T  S  I  T  R :   F  K  K  I  G  R  L  I  S  R  R  L  S  W  H  I  Y  F  L  L  H  V  L  *  M  S  L  P  A  K  S  C  I  S  S  Q  L  T  N  A  L  L  L  I  Q  H  V  L  I  W  E  F  L  S  H  P  *  S  *  V  C  K  A  K  G  L  Q  N  M  *  S  E  L  Q  L  F  P  *  A  K  K  P  E  H  R  M  T  L  V  L  N  R  P  L  M  E  H  P  L  G  R  R  S  W  S  L  V  V  M  A  I  V  A  G  L  L  L  S  T  Y  P  T  R  D  M  K  L  P  L  L  T  T  L  S  V  D  Y  L  T  T  S  L  V  *  I  L  *  H  P  S  H  L  F  I  T  A  *  G  V  G  N  L  S  Q  E  K  I  F  N  C  L  L  V  I  Y  V  S  L  S  S  W  Q  K  P  S  N  P  L  N  L  M  L  *  S  I  L  E  S  R  G  L  P  L  I  L  *  L  I  G  Q  E  L  F  I  P  N  I  I  M  *  *  G  H  L  M  Y  Y  L  P  *  R  S  L  G  K  S  V  I  W  S  N  S  G  P  W  G  N  M  E  P  L  I  *  I  L  K  K  V  I  *  L  L  L  I  T  E  E  Q  I  L  F  L  I  P  N  K  Q  A  P  S  I  I  *  V  K  S  M  I  P  T  T  *  P  S  L  A  R  R  G  E  S  E  L  P  T  *  I  R  E  L  Y  M  G  *  G  L  M  K  L  Q  Y  M  R  I  W  L  T  D  L  I  M  M  V  Y  L  E  L  H  *  I  V  S  V  F  R  L  L  L  D  I  H  *  R  C  M  V  K  E  G  R :   P  G  D  I  W  I  S  E  I  Q  F  N  V  L  K  L  Q  L  P  I  Q  Q  N  Q  E  S  S  G  F  S  T  N  S  Q  S  S  F  Q  *  M  S  L  Q  P  L  S  P  R  Q  G  K  N  L  A  L  R  *  R  P  Y  Q  C  P  I  Q  E  *  K  Q  R  N  T  T  T  M  P  N  I  L  N  L  L  S  W  D  Y  N  L  T  F  F  L  I  L  F  S  T  L  Y  *  T  L  L  F  N  I  R  I  V  S  T  Q  S  R  *  C  L  V  F  P  G  K  K  L  A  R  S  Q  R  L  L  Q  H  K  S  L  R  Q  A  I  E  T  *  D  W  E  F  L  Y  V  I  F  I  *  E  L  *  Y  F  T  M  P  C  T  I  L  C  C  N  F  G  K  Y  L  L  Y  S  E  A  C  E  G  C  G  C  S  F  C  L  R  K  Y  S  R  *  S  *  P  V  S  S  L  K  L  V  *  F  T  C  Q  F  S  F  G  Y  T  E  V  F  P  D  I  F  L  I  G  Q  </first_frame>
            <second_frame>  R  *  M  K  T  F  L  T  L  L  *  G  F  Y  V  *  Q  A  S  P   : G  L  R  K  L  V  G  S  Y  R  G  G  Y  H  G  T  F  T  F  Y  Y  M  F  F  R  C  L  F  Q  Q  K  A  A  F  Q  V  N  *  P  M  L  Y  S  *  S  N  M  F  *  Y  G  N  F  F  L  T  L  E  A  K  F  A  K  Q  K  V  C  K  I  C  D  Q  S  F  S  C  F  H  E  P  R  S  Q  N  T  E  *  L  W  F  S  T  D  H  *  W  S  I  H  *  E  E  G  H  G  H  W  W  *  W  L  L  W  L  G  Y  C  S  P  P  I  Q  Q  G  I  *  S  C  H  C  *  Q  P  Y  P  S  I  I  *  R  P  A  W  S  R  F  S  N  T  H  L  I  Y  S  *  P  H  K  A  L  E  I  S  H  R  K  R  Y  S  T  V  C  W  *  Y  M  *  V  *  V  L  G  R  S  L  Q  I  L  *  T  *  C  C  S  P  F  W  R  A  E  V  C  P  L  F  Y  D  *  *  V  K  S  Y  L  Y  P  T  *  *  C  D  R  D  T  *  C  T  I  C  H  K  G  V  *  G  R  V  S  F  G  Q  T  R  D  H  G  G  I  W  N  P  *  Y  R  Y  *  R  R  L  Y  N  Y  Y  S  *  R  K  N  R  Y  S  S  L  S  Q  T  S  K  L  L  L  S  F  E  *  S  P  *  F  P  Q  H  S  L  H  L  Q  G  V  G  N  Q  S  Y  R  P  E  S  G  S  C  I  W  G  E  D  *  *  N  C  N  T  *  G  S  G  *  Q  T  *  L  *  W  C  I  W  N  C  T  K  S  F  L  C  S  G  C  C  W  T  S  T  N  G  V  W  *  R  R  A   : D  Q  G  I  F  G  Y  Q  R  Y  S  S  M  C  *  N  C  N  C  Q  S  S  K  T  R  R  V  P  G  F  Q  P  I  H  R  A  V  F  S  K  *  A  C  S  P  C  H  Q  G  R  A  K  T  W  P  *  G  E  G  H  I  S  A  Q  S  K  S  R  S  R  G  T  L  L  Q  C  Q  T  Y  *  T  Y  *  A  G  T  T  T  S  P  S  F  *  F  S  S  R  L  S  I  E  L  C  C  S  I  *  G  S  C  R  H  K  A  D  N  A  *  C  F  L  E  K  N  W  R  E  A  K  D  C  C  S  I  N  H  L  D  K  L  *  R  L  E  T  G  S  S  C  M  S  F  L  Y  R  S  Y  S  I  L  Q  C  L  A  Q  F  Y  V  V  T  L  G  S  I  C  C  I  P  K  L  V  K  V  V  D  V  V  F  V  *  E  N  T  R  G  S  R  D  L  S  Q  A  *  N  L  C  D  L  L  V  N  L  V  L  A  T  Q  K  C  S  R  I  S  S  S  L  D  R </second_frame>
            <third_frame>   D  K  *  K  P  F  S  L  S  C  K  D  F  M  S  N  K  H  H  Q  :  V  *  E  N  W  *  A  H  I  E  A  A  I  M  A  H  L  L  S  T  T  C  S  L  D  V  S  S  S  K  K  L  H  F  K  S  I  N  Q  C  S  T  P  N  P  T  C  F  N  M  G  I  S  F  S  P  L  K  L  S  L  Q  S  K  R  S  A  K  Y  V  I  R  A  S  A  V  S  M  S  Q  E  A  R  T  Q  N  D  S  G  S  Q  Q  T  T  D  G  A  S  T  R  K  K  V  M  V  I  G  G  D  G  Y  C  G  W  A  T  A  L  H  L  S  N  K  G  Y  E  V  A  I  V  D  N  L  I  R  R  L  F  D  D  Q  L  G  L  D  S  L  T  P  I  S  S  I  H  N  R  I  R  R  W  K  S  L  T  G  K  D  I  Q  L  F  V  G  D  I  C  E  F  E  F  L  A  E  A  F  K  S  F  E  P  D  A  V  V  H  F  G  E  Q  R  S  A  P  Y  S  M  I  D  R  S  R  A  I  Y  T  Q  H  N  N  V  I  G  T  L  N  V  L  F  A  I  K  E  F  R  E  E  C  H  L  V  K  L  G  T  M  G  E  Y  G  T  P  N  I  D  I  E  E  G  Y  I  T  I  T  H  N  G  R  T  D  T  L  P  Y  P  K  Q  A  S  S  F  Y  H  L  S  K  V  H  D  S  H  N  I  A  F  T  C  K  A  W  G  I  R  A  T  D  L  N  Q  G  V  V  Y  G  V  R  T  D  E  T  A  I  H  E  D  L  V  N  R  L  D  Y  D  G  V  F  G  T  A  L  N  R  F  C  V  Q  A  A  V  G  H  P  L  T  V  Y  G  K  G  G  Q  :  T  R  G  Y  L  D  I  R  D  T  V  Q  C  V  E  I  A  I  A  N  P  A  K  P  G  E  F  R  V  F  N  Q  F  T  E  Q  F  S  V  N  E  L  A  A  L  V  T  K  A  G  Q  K  L  G  L  E  V  K  A  I  S  V  P  N  P  R  V  E  A  E  E  H  Y  Y  N  A  K  H  T  K  L  I  E  L  G  L  Q  P  H  L  L  S  D  S  L  L  D  S  L  L  N  F  A  V  Q  Y  K  D  R  V  D  T  K  Q  I  M  P  S  V  S  W  K  K  I  G  A  K  P  K  T  V  A  A  *  I  T  *  T  S  Y  R  D  L  R  L  G  V  L  V  C  H  F  Y  I  G  A  I  V  F  Y  N  A  L  H  N  F  M  L  *  L  W  E  V  F  V  V  F  R  S  L  *  R  L  W  M  *  F  L  F  E  K  I  L  E  V  V  V  T  C  L  K  P  E  T  C  V  I  Y  L  S  I  *  F  W  L  H  R  S  V  P  G  Y  L  P  H  W  T   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="-"/>
                <serials PGL_serial="9" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76792" stop="75731"/>
                    <exon start="74893" stop="74492"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1461</number_coding_nucleotides>
                  <number_encoded_amino_acids>487</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AHIEAAIMAHLLSTTCSLDVSSSKKLHFKSINQCSTPNPTCFNMGISFSPLKLSLQSKRSAKYVIRASAVSMSQEARTQNDSGSQQTTDGASTRKKVMVIGGDGYCGWATALHLSNKGYEVAIVDNLIRRLFDDQLGLDSLTPISSIHNRIRRWKSLTGKDIQLFVGDICEFEFLAEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAIYTQHNNVIGTLNVLFAIKEFREECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAIHEDLVNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKPGEFRVFNQFTEQFSVNELAALVTKAGQKLGLEVKAISVPNPRVEAEEHYYNAKHTKLIELGLQPHLLSDSLLDSLLNFAVQYKDRVDTKQIMPSVSWKKIGAKPKTVAA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="10" PGL_strand="-" PGL_start="80710" PGL_stop="79478"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80710" e_stop="79478"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.925"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.925">
            <gDNA_exon_boundary e_start="80710" e_stop="79478" e_length="1233"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80710" stop="79478"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U586538" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="10" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAGAGTCTATGATACGCCAAAAGCATAATAGACCAATTGATTCCAAATATAAAATTTCTTAAAGAAGAAAGGAGCAAATGATCAATATGGTCATGATAATGAGGCAAGTGCTATAAAAGCGCACATTGACATAACACTTCATAAAATCTTGAAAAAGGTTCAGGTACCTAAAATAATAAAAAATGAAAAGATCTCGATAAGTTATGTCTTGTTGGAATCGATATCAAATAACCGTCGACGGTATCTTTGATATGAGGTAGCGCTCAATGATATAAATTGTGACGAGGATCTTGAATTCAAATTTGTCATATAGTGTGGACAGATAAATGGTTGGCCAAGTAAAATGCACAATTCAAGTATATTTTGTTTCACTTAGAAAAGTGACATTTTGGACTGGTAGTCCATAAATCAAGGTATAATGTCAGTGGGGTACAAATAAATTATTATGCGATAGTATAATCGTAAGATATCAAATACGATTTGTGCCTTGGGGCATAAAGGTTATCGCAAAAATCCTGACATTATTGGAGATGTTTTCTCCTTTGGTGGATGCAATGAGGTTCGTTTTGATCTGGCAACATATGAAAAACTTGAATACATGTAATGAATAATTGTAATGTCTAGCTAGACAATGAAGGTTATATGAAAATCCTTGAAACAATCGAGGTGTCTGAAGCATATAAGAGTTTGACAGAAACTTTTTTAATATATAAAGCCTCAATAATCCTTATATGGATTGCAATAGTCAAGAAAGAAAAGGGTACAAAAGAATGACCCTAATTGTCTTTGTATTTTATGAAAATGTCTTGGTAAGACAGAATTTTCTCTTGACCTACAGATTGATAATTTGACAAATGAAATGTTTGTCTAACAGTGCACATACACTGAAAAGTTTTGATGCAATTTTATATGGATAAATCGCATTCATTGAGTACCCCAATGATTATGAGATCACTTCATAAATGATGATTCAGTTTGATCTCAAACGAAGGATGATGAGTTTCTTGGTGATGAAACTCTATCTTGGTGCAATCAGGGCACTAGTGCATCTTACTAACAATATTTGACTAGATATTTGTTTTGCAGTAAATTTACTGGCAAGATTCAGTTTCTCCCCGATAAAAGGACATTGAAATGGTGTTGAACACATGATTGAATATCCTCGAAGGACCGTAGTTATGGGCTTATTCTATCCCGAAGAATCCAAGACAAAATTGATTGGTTACGCAGATG</gDNA_template>
            <first_frame> Q  S  L  *  Y  A  K  S  I  I  D  Q  L  I  P  N  I  K  F  L  K  E  E  R  S  K  *  S  I  W  S  *  *  *  G  K  C  Y  K  S  A  H  *  H  N  T  S  *  N  L  E  K  G  S  G  T  *  N  N  K  K  *  K  D  L  D  K  L  C  L  V  G  I  D  I  K  *  P  S  T  V  S  L  I  *  G  S  A  Q  *  Y  K  L  *  R  G  S  *  I  Q  I  C  H  I  V  W  T  D  K  W  L  A  K  *  N  A  Q  F  K  Y  I  L  F  H  L  E  K  *  H  F  G  L  V  V  H  K  S  R  Y  N  V  S  G  V  Q  I  N  Y  Y  A  I  V  *  S  *  D  I  K  Y  D  L  C  L  G  A  *  R  L  S  Q  K  S  *  H  Y  W  R  C  F  L  L  W  W  M  Q  *  G  S  F  *  S  G  N  I  *  K  T  *  I  H  V  M  N  N  C  N  V  *  L  D  N  E  G  Y  M  K  I  L  E  T  I  E  V  S  E  A  Y  K  S  L  T  E  T  F  L  I  Y  K  A  S  I  I  L  I  W  I  A  I  V  K  K  E  K  G  T  K  E  *  P  *  L  S  L  Y  F  M  K  M  S  W  *  D  R  I  F  S  *  P  T  D  *  *  F  D  K  *  N  V  C  L  T  V  H  I  H  *  K  V  L  M  Q  F  Y  M  D  K  S  H  S  L  S  T  P  M  I  M  R  S  L  H  K  *  *  F  S  L  I  S  N  E  G  *  *  V  S  W  *  *  N  S  I  L  V  Q  S  G  H  *  C  I  L  L  T  I  F  D  *  I  F  V  L  Q  *  I  Y  W  Q  D  S  V  S  P  R  *  K  D  I  E  M  V  L  N  T  *  L  N  I  L  E  G  P  *  L  W  A  Y  S  I  P  K  N  P  R  Q  N  *  L  V  T  Q  M </first_frame>
            <second_frame>  R  V  Y  D  T  P  K  A  *  *  T  N  *  F  Q  I  *  N  F  L  K  K  K  G  A  N  D  Q  Y  G  H  D  N  E  A  S  A  I  K  A  H  I  D  I  T  L  H  K  I  L  K  K  V  Q  V  P  K  I  I  K  N  E  K  I  S  I  S  Y  V  L  L  E  S  I  S  N  N  R  R  R  Y  L  *  Y  E  V  A  L  N  D  I  N  C  D  E  D  L  E  F  K  F  V  I  *  C  G  Q  I  N  G  W  P  S  K  M  H  N  S  S  I  F  C  F  T  *  K  S  D  I  L  D  W  *  S  I  N  Q  G  I  M  S  V  G  Y  K  *  I  I  M  R  *  Y  N  R  K  I  S  N  T  I  C  A  L  G  H  K  G  Y  R  K  N  P  D  I  I  G  D  V  F  S  F  G  G  C  N  E  V  R  F  D  L  A  T  Y  E  K  L  E  Y  M  *  *  I  I  V  M  S  S  *  T  M  K  V  I  *  K  S  L  K  Q  S  R  C  L  K  H  I  R  V  *  Q  K  L  F  *  Y  I  K  P  Q  *  S  L  Y  G  L  Q  *  S  R  K  K  R  V  Q  K  N  D  P  N  C  L  C  I  L  *  K  C  L  G  K  T  E  F  S  L  D  L  Q  I  D  N  L  T  N  E  M  F  V  *  Q  C  T  Y  T  E  K  F  *  C  N  F  I  W  I  N  R  I  H  *  V  P  Q  *  L  *  D  H  F  I  N  D  D  S  V  *  S  Q  T  K  D  D  E  F  L  G  D  E  T  L  S  W  C  N  Q  G  T  S  A  S  Y  *  Q  Y  L  T  R  Y  L  F  C  S  K  F  T  G  K  I  Q  F  L  P  D  K  R  T  L  K  W  C  *  T  H  D  *  I  S  S  K  D  R  S  Y  G  L  I  L  S  R  R  I  Q  D  K  I  D  W  L  R  R   </second_frame>
            <third_frame>   E  S  M  I  R  Q  K  H  N  R  P  I  D  S  K  Y  K  I  S  *  R  R  K  E  Q  M  I  N  M  V  M  I  M  R  Q  V  L  *  K  R  T  L  T  *  H  F  I  K  S  *  K  R  F  R  Y  L  K  *  *  K  M  K  R  S  R  *  V  M  S  C  W  N  R  Y  Q  I  T  V  D  G  I  F  D  M  R  *  R  S  M  I  *  I  V  T  R  I  L  N  S  N  L  S  Y  S  V  D  R  *  M  V  G  Q  V  K  C  T  I  Q  V  Y  F  V  S  L  R  K  V  T  F  W  T  G  S  P  *  I  K  V  *  C  Q  W  G  T  N  K  L  L  C  D  S  I  I  V  R  Y  Q  I  R  F  V  P  W  G  I  K  V  I  A  K  I  L  T  L  L  E  M  F  S  P  L  V  D  A  M  R  F  V  L  I  W  Q  H  M  K  N  L  N  T  C  N  E  *  L  *  C  L  A  R  Q  *  R  L  Y  E  N  P  *  N  N  R  G  V  *  S  I  *  E  F  D  R  N  F  F  N  I  *  S  L  N  N  P  Y  M  D  C  N  S  Q  E  R  K  G  Y  K  R  M  T  L  I  V  F  V  F  Y  E  N  V  L  V  R  Q  N  F  L  L  T  Y  R  L  I  I  *  Q  M  K  C  L  S  N  S  A  H  T  L  K  S  F  D  A  I  L  Y  G  *  I  A  F  I  E  Y  P  N  D  Y  E  I  T  S  *  M  M  I  Q  F  D  L  K  R  R  M  M  S  F  L  V  M  K  L  Y  L  G  A  I  R  A  L  V  H  L  T  N  N  I  *  L  D  I  C  F  A  V  N  L  L  A  R  F  S  F  S  P  I  K  G  H  *  N  G  V  E  H  M  I  E  Y  P  R  R  T  V  V  M  G  L  F  Y  P  E  E  S  K  T  K  L  I  G  Y  A  D  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="-"/>
                <serials PGL_serial="10" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="80658" stop="80461"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>195</number_coding_nucleotides>
                  <number_encoded_amino_acids>65</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NFLKKKGANDQYGHDNEASAIKAHIDITLHKILKKVQVPKIIKNEKISISYVLLESISNNRRRYL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="11" PGL_strand="-" PGL_start="108980" PGL_stop="108834"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="108980" e_stop="108834"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.932"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.932">
            <gDNA_exon_boundary e_start="108980" e_stop="108834" e_length="147"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="108980" stop="108834"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U599792" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="11" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TATTGTAAACCCTACTATATGCTTAATTGTATGTTTGCATGAATATGATTATGTAATTGTGATAAGATAAGCATGATCAAAAATATTGAATCCCAAATCTTGAAAAGAAACTTTAATATACATTATTAATGATGATGTCTTGGTATA</gDNA_template>
            <first_frame> Y  C  K  P  Y  Y  M  L  N  C  M  F  A  *  I  *  L  C  N  C  D  K  I  S  M  I  K  N  I  E  S  Q  I  L  K  R  N  F  N  I  H  Y  *  *  *  C  L  G  I </first_frame>
            <second_frame>  I  V  N  P  T  I  C  L  I  V  C  L  H  E  Y  D  Y  V  I  V  I  R  *  A  *  S  K  I  L  N  P  K  S  *  K  E  T  L  I  Y  I  I  N  D  D  V  L  V   </second_frame>
            <third_frame>   L  *  T  L  L  Y  A  *  L  Y  V  C  M  N  M  I  M  *  L  *  *  D  K  H  D  Q  K  Y  *  I  P  N  L  E  K  K  L  *  Y  T  L  L  M  M  M  S  W  Y  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0076I13.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="12" PGL_strand="+" PGL_start="112390" PGL_stop="113584"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112390" e_stop="112845"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.980"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.980">
            <gDNA_exon_boundary e_start="112390" e_stop="112845" e_length="456"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112390" stop="112845"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U576386" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>CCTTCACTTCATCACTCACACTCCATTGATTCACATTCACTCACTGAAATACACTCTCCCATAGAAAATATCTTCAATTTTCATTAAACAAGTTCAAGATTTTTGCCTACGATTCTTTGCTACACAGACAAGGTAAGAGGGTTTTGGTAAGTCTTTTGAACAGCTAACCATATATATATAGCCTTATAACTGAAAAGGGGTATGTATTAATTTTCAAAAAAAAAATATATGTTGTGGCGCCTCCTTGCATATGCCAACAATGTCTAGAGTTGCAGAAAAGTAAAAGGGTTTGTCAGAACAGAATTTCAATTAAAGATTACATCTTTTTACAAGTTGTGATCTTACAATTCTTGTTTTTTTTTTTCTTTTTTGAGAAGAATTTAGGGAAGGGTCTTTTTCAGATCTCTTTTTCTAGCATTTTTCTTATGGCAGATTCAAGAAAGTACATTTCTAGTG</gDNA_template>
            <first_frame> P  S  L  H  H  S  H  S  I  D  S  H  S  L  T  E  I  H  S  P  I  E  N  I  F  N  F  H  *  T  S  S  R  F  L  P  T  I  L  C  Y  T  D  K  V  R  G  F  W  *  V  F  *  T  A  N  H  I  Y  I  A  L  *  L  K  R  G  M  Y  *  F  S  K  K  K  Y  M  L  W  R  L  L  A  Y  A  N  N  V  *  S  C  R  K  V  K  G  F  V  R  T  E  F  Q  L  K  I  T  S  F  Y  K  L  *  S  Y  N  S  C  F  F  F  S  F  L  R  R  I  *  G  R  V  F  F  R  S  L  F  L  A  F  F  L  W  Q  I  Q  E  S  T  F  L  V </first_frame>
            <second_frame>  L  H  F  I  T  H  T  P  L  I  H  I  H  S  L  K  Y  T  L  P  *  K  I  S  S  I  F  I  K  Q  V  Q  D  F  C  L  R  F  F  A  T  Q  T  R  *  E  G  F  G  K  S  F  E  Q  L  T  I  Y  I  *  P  Y  N  *  K  G  V  C  I  N  F  Q  K  K  N  I  C  C  G  A  S  L  H  M  P  T  M  S  R  V  A  E  K  *  K  G  L  S  E  Q  N  F  N  *  R  L  H  L  F  T  S  C  D  L  T  I  L  V  F  F  F  L  F  *  E  E  F  R  E  G  S  F  S  D  L  F  F  *  H  F  S  Y  G  R  F  K  K  V  H  F  *   </second_frame>
            <third_frame>   F  T  S  S  L  T  L  H  *  F  T  F  T  H  *  N  T  L  S  H  R  K  Y  L  Q  F  S  L  N  K  F  K  I  F  A  Y  D  S  L  L  H  R  Q  G  K  R  V  L  V  S  L  L  N  S  *  P  Y  I  Y  S  L  I  T  E  K  G  Y  V  L  I  F  K  K  K  I  Y  V  V  A  P  P  C  I  C  Q  Q  C  L  E  L  Q  K  S  K  R  V  C  Q  N  R  I  S  I  K  D  Y  I  F  L  Q  V  V  I  L  Q  F  L  F  F  F  F  F  F  E  K  N  L  G  K  G  L  F  Q  I  S  F  S  S  I  F  L  M  A  D  S  R  K  Y  I  S  S  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112557" stop="112844"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>288</number_coding_nucleotides>
                  <number_encoded_amino_acids>96</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PYIYSLITEKGYVLIFKKKIYVVAPPCICQQCLELQKSKRVCQNRISIKDYIFLQVVILQFLFFFFFFEKNLGKGLFQISFSSIFLMADSRKYISS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="112450" e_stop="112521"/>
            <exon e_start="112767" e_stop="113427"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.909" acc_prob="0.000" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112450" e_stop="112521" e_length="72"/>
          </exon>
          <intron i_serial="1" don_prob="0.909" acc_prob="0.000">
            <gDNA_intron_boundary i_start="112522" i_stop="112766" i_length="245"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112767" e_stop="113427" e_length="661"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112450" stop="112521"/>
              <exon start="112767" stop="113427"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594828" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="2" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ATAGAAAATATCTTCAATTTTCATTAAACAAGTTCAAGATTTTTGCCTACGATTCTTTGCTACACAGACAAG : AATTTAGGGAAGGGTCTTTTTCAGATCTCTTTTTCTAGCATTTTTCTTATGGCAGATTCAAGAAAGTACATTTCTAGTGAGGAACTGAAGAATCACAACAAACCAGGGGATCTGTGGATATCCATTCAGGGTAAGGTGTATGATGTATCAGATTGGGTGAAGGAACATCCTGGTGGTGATTTCCCACTGTTAAATCTTGCTGGACAGGATGTTACTGATGCATTTGTTGCATTTCATCCTGCTACTGCTTGGAAGTATCTTGACAAGTTCTTTAAGGGGTTTTACCTCAAGGATTATTCTGTTTCTGAGGTATCTACGGATTATAGAAGGCTTGTGTCTGAGTTCACTAAAATGGGGTTGTTTGAAAAGAAAGGCCATGTTTGTTTATTCACCATGTTCTTAATGACAATGTTGTTTTCCTTAAGTGTTTATGGAATCTTGTATTGTCATGGTGTGTTGGCACATTTGATAAGTGGTGCCTTGATGGGGTGTCTTTGGATTCAGAGTGGGTGGATTGGTCATGATTCAGGGCATTATCAGGTGATGAGCACTCGCGGATTCAACAGATTTGCTCAAGTCCTTACTGGGAATTGCCTTGCTGGAATCAGCATTGCTTGGTGGAAGTGGAACCACAATGCTCACCACATTGCCTGCAACAGTC</gDNA_template>
            <first_frame> I  E  N  I  F  N  F  H  *  T  S  S  R  F  L  P  T  I  L  C  Y  T  D  K  :  N  L  G  K  G  L  F  Q  I  S  F  S  S  I  F  L  M  A  D  S  R  K  Y  I  S  S  E  E  L  K  N  H  N  K  P  G  D  L  W  I  S  I  Q  G  K  V  Y  D  V  S  D  W  V  K  E  H  P  G  G  D  F  P  L  L  N  L  A  G  Q  D  V  T  D  A  F  V  A  F  H  P  A  T  A  W  K  Y  L  D  K  F  F  K  G  F  Y  L  K  D  Y  S  V  S  E  V  S  T  D  Y  R  R  L  V  S  E  F  T  K  M  G  L  F  E  K  K  G  H  V  C  L  F  T  M  F  L  M  T  M  L  F  S  L  S  V  Y  G  I  L  Y  C  H  G  V  L  A  H  L  I  S  G  A  L  M  G  C  L  W  I  Q  S  G  W  I  G  H  D  S  G  H  Y  Q  V  M  S  T  R  G  F  N  R  F  A  Q  V  L  T  G  N  C  L  A  G  I  S  I  A  W  W  K  W  N  H  N  A  H  H  I  A  C  N  S  </first_frame>
            <second_frame>  *  K  I  S  S  I  F  I  K  Q  V  Q  D  F  C  L  R  F  F  A  T  Q  T  R :   I  *  G  R  V  F  F  R  S  L  F  L  A  F  F  L  W  Q  I  Q  E  S  T  F  L  V  R  N  *  R  I  T  T  N  Q  G  I  C  G  Y  P  F  R  V  R  C  M  M  Y  Q  I  G  *  R  N  I  L  V  V  I  S  H  C  *  I  L  L  D  R  M  L  L  M  H  L  L  H  F  I  L  L  L  L  G  S  I  L  T  S  S  L  R  G  F  T  S  R  I  I  L  F  L  R  Y  L  R  I  I  E  G  L  C  L  S  S  L  K  W  G  C  L  K  R  K  A  M  F  V  Y  S  P  C  S  *  *  Q  C  C  F  P  *  V  F  M  E  S  C  I  V  M  V  C  W  H  I  *  *  V  V  P  *  W  G  V  F  G  F  R  V  G  G  L  V  M  I  Q  G  I  I  R  *  *  A  L  A  D  S  T  D  L  L  K  S  L  L  G  I  A  L  L  E  S  A  L  L  G  G  S  G  T  T  M  L  T  T  L  P  A  T  V </second_frame>
            <third_frame>   R  K  Y  L  Q  F  S  L  N  K  F  K  I  F  A  Y  D  S  L  L  H  R  Q   : E  F  R  E  G  S  F  S  D  L  F  F  *  H  F  S  Y  G  R  F  K  K  V  H  F  *  *  G  T  E  E  S  Q  Q  T  R  G  S  V  D  I  H  S  G  *  G  V  *  C  I  R  L  G  E  G  T  S  W  W  *  F  P  T  V  K  S  C  W  T  G  C  Y  *  C  I  C  C  I  S  S  C  Y  C  L  E  V  S  *  Q  V  L  *  G  V  L  P  Q  G  L  F  C  F  *  G  I  Y  G  L  *  K  A  C  V  *  V  H  *  N  G  V  V  *  K  E  R  P  C  L  F  I  H  H  V  L  N  D  N  V  V  F  L  K  C  L  W  N  L  V  L  S  W  C  V  G  T  F  D  K  W  C  L  D  G  V  S  L  D  S  E  W  V  D  W  S  *  F  R  A  L  S  G  D  E  H  S  R  I  Q  Q  I  C  S  S  P  Y  W  E  L  P  C  W  N  Q  H  C  L  V  E  V  E  P  Q  C  S  P  H  C  L  Q  Q   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112477" stop="112521"/>
                    <exon start="112767" stop="113426"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>705</number_coding_nucleotides>
                  <number_encoded_amino_acids>235</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSSRFLPTILCYTDKNLGKGLFQISFSSIFLMADSRKYISSEELKNHNKPGDLWISIQGKVYDVSDWVKEHPGGDFPLLNLAGQDVTDAFVAFHPATAWKYLDKFFKGFYLKDYSVSEVSTDYRRLVSEFTKMGLFEKKGHVCLFTMFLMTMLFSLSVYGILYCHGVLAHLISGALMGCLWIQSGWIGHDSGHYQVMSTRGFNRFAQVLTGNCLAGISIAWWKWNHNAHHIACNS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="3">
          <exon_coordinates>
            <exon e_start="112397" e_stop="112521"/>
            <exon e_start="112767" e_stop="113075"/>
            <exon e_start="113271" e_stop="113584"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.909" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.078" acc_prob="0.979" e_score="1.000"/>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="112397" e_stop="112521" e_length="125"/>
          </exon>
          <intron i_serial="1" don_prob="0.909" acc_prob="0.000">
            <gDNA_intron_boundary i_start="112522" i_stop="112766" i_length="245"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="112767" e_stop="113075" e_length="309"/>
          </exon>
          <intron i_serial="2" don_prob="0.078" acc_prob="0.979">
            <gDNA_intron_boundary i_start="113076" i_stop="113270" i_length="195"/>
          </intron>
          <exon e_serial="3" e_score="0.994">
            <gDNA_exon_boundary e_start="113271" e_stop="113584" e_length="314"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112397" stop="112521"/>
              <exon start="112767" stop="113075"/>
              <exon start="113271" stop="113584"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594830" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="12" AGS_serial="3" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTCATCACTCACACTCCATTGATTCACATTCACTCACTGAAATACACTCTCCCATAGAAAATATCTTCAATTTTCATTAAACAAGTTCAAGATTTTTGCCTACGATTCTTTGCTACACAGACAAG : AATTTAGGGAAGGGTCTTTTTCAGATCTCTTTTTCTAGCATTTTTCTTATGGCAGATTCAAGAAAGTACATTTCTAGTGAGGAACTGAAGAATCACAACAAACCAGGGGATCTGTGGATATCCATTCAGGGTAAGGTGTATGATGTATCAGATTGGGTGAAGGAACATCCTGGTGGTGATTTCCCACTGTTAAATCTTGCTGGACAGGATGTTACTGATGCATTTGTTGCATTTCATCCTGCTACTGCTTGGAAGTATCTTGACAAGTTCTTTAAGGGGTTTTACCTCAAGGATTATTCTGTTTCTGAG : AGTGGGTGGATTGGTCATGATTCAGGGCATTATCAGGTGATGAGCACTCGCGGATTCAACAGATTTGCTCAAGTCCTTACTGGGAATTGCCTTGCTGGAATCAGCATTGCTTGGTGGAAGTGGAACCACAATGCTCACCACATTGCCTGCAACAGTCTTGAATATGACCCTGATCTTCAACACATGCCATTCTTTGTGGTATCTTCCAAGTTTTTCGACTCACTCACTTCTTATTTTTACGATAGGAAGATGAATTTTGATTCTTTTACTAGATTCTTGGTTAGTCATCAACATTGGACATTTTATCCTGTTAT</gDNA_template>
            <first_frame> F  I  T  H  T  P  L  I  H  I  H  S  L  K  Y  T  L  P  *  K  I  S  S  I  F  I  K  Q  V  Q  D  F  C  L  R  F  F  A  T  Q  T  R :   I  *  G  R  V  F  F  R  S  L  F  L  A  F  F  L  W  Q  I  Q  E  S  T  F  L  V  R  N  *  R  I  T  T  N  Q  G  I  C  G  Y  P  F  R  V  R  C  M  M  Y  Q  I  G  *  R  N  I  L  V  V  I  S  H  C  *  I  L  L  D  R  M  L  L  M  H  L  L  H  F  I  L  L  L  L  G  S  I  L  T  S  S  L  R  G  F  T  S  R  I  I  L  F  L  R :   V  G  G  L  V  M  I  Q  G  I  I  R  *  *  A  L  A  D  S  T  D  L  L  K  S  L  L  G  I  A  L  L  E  S  A  L  L  G  G  S  G  T  T  M  L  T  T  L  P  A  T  V  L  N  M  T  L  I  F  N  T  C  H  S  L  W  Y  L  P  S  F  S  T  H  S  L  L  I  F  T  I  G  R  *  I  L  I  L  L  L  D  S  W  L  V  I  N  I  G  H  F  I  L  L  </first_frame>
            <second_frame>  S  S  L  T  L  H  *  F  T  F  T  H  *  N  T  L  S  H  R  K  Y  L  Q  F  S  L  N  K  F  K  I  F  A  Y  D  S  L  L  H  R  Q   : E  F  R  E  G  S  F  S  D  L  F  F  *  H  F  S  Y  G  R  F  K  K  V  H  F  *  *  G  T  E  E  S  Q  Q  T  R  G  S  V  D  I  H  S  G  *  G  V  *  C  I  R  L  G  E  G  T  S  W  W  *  F  P  T  V  K  S  C  W  T  G  C  Y  *  C  I  C  C  I  S  S  C  Y  C  L  E  V  S  *  Q  V  L  *  G  V  L  P  Q  G  L  F  C  F  *   : E  W  V  D  W  S  *  F  R  A  L  S  G  D  E  H  S  R  I  Q  Q  I  C  S  S  P  Y  W  E  L  P  C  W  N  Q  H  C  L  V  E  V  E  P  Q  C  S  P  H  C  L  Q  Q  S  *  I  *  P  *  S  S  T  H  A  I  L  C  G  I  F  Q  V  F  R  L  T  H  F  L  F  L  R  *  E  D  E  F  *  F  F  Y  *  I  L  G  *  S  S  T  L  D  I  L  S  C  Y </second_frame>
            <third_frame>   H  H  S  H  S  I  D  S  H  S  L  T  E  I  H  S  P  I  E  N  I  F  N  F  H  *  T  S  S  R  F  L  P  T  I  L  C  Y  T  D  K  :  N  L  G  K  G  L  F  Q  I  S  F  S  S  I  F  L  M  A  D  S  R  K  Y  I  S  S  E  E  L  K  N  H  N  K  P  G  D  L  W  I  S  I  Q  G  K  V  Y  D  V  S  D  W  V  K  E  H  P  G  G  D  F  P  L  L  N  L  A  G  Q  D  V  T  D  A  F  V  A  F  H  P  A  T  A  W  K  Y  L  D  K  F  F  K  G  F  Y  L  K  D  Y  S  V  S  E  :  S  G  W  I  G  H  D  S  G  H  Y  Q  V  M  S  T  R  G  F  N  R  F  A  Q  V  L  T  G  N  C  L  A  G  I  S  I  A  W  W  K  W  N  H  N  A  H  H  I  A  C  N  S  L  E  Y  D  P  D  L  Q  H  M  P  F  F  V  V  S  S  K  F  F  D  S  L  T  S  Y  F  Y  D  R  K  M  N  F  D  S  F  T  R  F  L  V  S  H  Q  H  W  T  F  Y  P  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="+"/>
                <serials PGL_serial="12" AGS_serial="3" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112477" stop="112521"/>
                    <exon start="112767" stop="113075"/>
                    <exon start="113271" stop="113582"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>666</number_coding_nucleotides>
                  <number_encoded_amino_acids>222</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TSSRFLPTILCYTDKNLGKGLFQISFSSIFLMADSRKYISSEELKNHNKPGDLWISIQGKVYDVSDWVKEHPGGDFPLLNLAGQDVTDAFVAFHPATAWKYLDKFFKGFYLKDYSVSESGWIGHDSGHYQVMSTRGFNRFAQVLTGNCLAGISIAWWKWNHNAHHIACNSLEYDPDLQHMPFFVVSSKFFDSLTSYFYDRKMNFDSFTRFLVSHQHWTFYPV</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="13" PGL_strand="-" PGL_start="133241" PGL_stop="132496"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="133241" e_stop="132496"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="133241" e_stop="132496" e_length="746"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133241" stop="132496"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595872" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="13" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>ATCCGAGATAAGGTGTTGCGAGGAGAGGCTAAAGAAGCAAAAATTGATGAGAAAGGTGTTTTGAGAATTAAGGGAAGGGTATGTGTACCCCGCGTCGATGATTTGATTCACACTATTCTTACGGAGGCCCATAGTTCAAGGTATTCTATACATCCTGGTGCAACCAAGATGTATCGTGATCTAAAGCAATATTTTTGGTGGAGTATGATTAAGCGTGACATTGTTGATTTTGTTGCTCAATTCCCGAATTGTCAGCAAGTAAAGTATGAATACCAGAGGCCTGGAGGGACACTTCAGAGAATGCCCATTCCTGAATGGAAGTGGGAGAGAATTGCAATGGACTTCGTGGTTGGTCTCCAAAGACGATGAGTAAGTATGACTCTATTTGGGTGATTTTTGATAGATTAACTAAGTCTGCTCATTTCATTCCGGTCAAGGTGACTTATAATGCAGAGAAGTTAGCCAAAATTTACATCTCAGAAATTGTTCGATTGCATGGAGTTCCACTCTCCATCATATGAGATAGAGGTACGCAGTTTACTTCTAAGTTTTGGAAAACATTGCATGCTGAATTAGGTACTAGATTGGATTTTAGTACTGCATTTCACCCTCAGACCGATGGTCAGTCTAAGCAAACGATTCAGGTTTTGGAGGATATGCTTCGTGCATGTGTGATAGAGTTTGGTGGTCATTGGGATAACTTCTTACCCTTAGCAGAGTTCTCATACAACAATAGCTATCACTCA</gDNA_template>
            <first_frame> I  R  D  K  V  L  R  G  E  A  K  E  A  K  I  D  E  K  G  V  L  R  I  K  G  R  V  C  V  P  R  V  D  D  L  I  H  T  I  L  T  E  A  H  S  S  R  Y  S  I  H  P  G  A  T  K  M  Y  R  D  L  K  Q  Y  F  W  W  S  M  I  K  R  D  I  V  D  F  V  A  Q  F  P  N  C  Q  Q  V  K  Y  E  Y  Q  R  P  G  G  T  L  Q  R  M  P  I  P  E  W  K  W  E  R  I  A  M  D  F  V  V  G  L  Q  R  R  *  V  S  M  T  L  F  G  *  F  L  I  D  *  L  S  L  L  I  S  F  R  S  R  *  L  I  M  Q  R  S  *  P  K  F  T  S  Q  K  L  F  D  C  M  E  F  H  S  P  S  Y  E  I  E  V  R  S  L  L  L  S  F  G  K  H  C  M  L  N  *  V  L  D  W  I  L  V  L  H  F  T  L  R  P  M  V  S  L  S  K  R  F  R  F  W  R  I  C  F  V  H  V  *  *  S  L  V  V  I  G  I  T  S  Y  P  *  Q  S  S  H  T  T  I  A  I  T   </first_frame>
            <second_frame>  S  E  I  R  C  C  E  E  R  L  K  K  Q  K  L  M  R  K  V  F  *  E  L  R  E  G  Y  V  Y  P  A  S  M  I  *  F  T  L  F  L  R  R  P  I  V  Q  G  I  L  Y  I  L  V  Q  P  R  C  I  V  I  *  S  N  I  F  G  G  V  *  L  S  V  T  L  L  I  L  L  L  N  S  R  I  V  S  K  *  S  M  N  T  R  G  L  E  G  H  F  R  E  C  P  F  L  N  G  S  G  R  E  L  Q  W  T  S  W  L  V  S  K  D  D  E  *  V  *  L  Y  L  G  D  F  *  *  I  N  *  V  C  S  F  H  S  G  Q  G  D  L  *  C  R  E  V  S  Q  N  L  H  L  R  N  C  S  I  A  W  S  S  T  L  H  H  M  R  *  R  Y  A  V  Y  F  *  V  L  E  N  I  A  C  *  I  R  Y  *  I  G  F  *  Y  C  I  S  P  S  D  R  W  S  V  *  A  N  D  S  G  F  G  G  Y  A  S  C  M  C  D  R  V  W  W  S  L  G  *  L  L  T  L  S  R  V  L  I  Q  Q  *  L  S  L  </second_frame>
            <third_frame>   P  R  *  G  V  A  R  R  G  *  R  S  K  N  *  *  E  R  C  F  E  N  *  G  K  G  M  C  T  P  R  R  *  F  D  S  H  Y  S  Y  G  G  P  *  F  K  V  F  Y  T  S  W  C  N  Q  D  V  S  *  S  K  A  I  F  L  V  E  Y  D  *  A  *  H  C  *  F  C  C  S  I  P  E  L  S  A  S  K  V  *  I  P  E  A  W  R  D  T  S  E  N  A  H  S  *  M  E  V  G  E  N  C  N  G  L  R  G  W  S  P  K  T  M  S  K  Y  D  S  I  W  V  I  F  D  R  L  T  K  S  A  H  F  I  P  V  K  V  T  Y  N  A  E  K  L  A  K  I  Y  I  S  E  I  V  R  L  H  G  V  P  L  S  I  I  *  D  R  G  T  Q  F  T  S  K  F  W  K  T  L  H  A  E  L  G  T  R  L  D  F  S  T  A  F  H  P  Q  T  D  G  Q  S  K  Q  T  I  Q  V  L  E  D  M  L  R  A  C  V  I  E  F  G  G  H  W  D  N  F  L  P  L  A  E  F  S  Y  N  N  S  Y  H  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133241" stop="132873"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IRDKVLRGEAKEAKIDEKGVLRIKGRVCVPRVDDLIHTILTEAHSSRYSIHPGATKMYRDLKQYFWWSMIKRDIVDFVAQFPNCQQVKYEYQRPGGTLQRMPIPEWKWERIAMDFVVGLQRR*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="-"/>
                <serials PGL_serial="13" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132720" stop="132496"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>225</number_coding_nucleotides>
                  <number_encoded_amino_acids>75</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>DRGTQFTSKFWKTLHAELGTRLDFSTAFHPQTDGQSKQTIQVLEDMLRACVIEFGGHWDNFLPLAEFSYNNSYHS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="14" PGL_strand="+" PGL_start="132664" PGL_stop="133701"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="132664" e_stop="133701"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.939"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.939">
            <gDNA_exon_boundary e_start="132664" e_stop="133701" e_length="1038"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132664" stop="133155"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575264" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="132670" stop="133163"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U595870" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="133113" stop="133701"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U575265" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="14" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACCTAATTCAGCATGCAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTCATATGATGGAGAGTGGAACTCCATGCAATCGAACAATTTCTGAGATGTAAATTTTGGCTAACTTCTCTGCATTATAAGTCACCTTGACCGGAATGAAATGAGCAGACTTAGTTAATCTATCAAAAATCACCCAAATAGAGTCATACTTACTCATCGTCTTTGGAGACCAACCACGAAGTCCATTGCAATTCTCTCCCACTTCCATTCAGGAATGGGCATTCTCTGAAGTGTCCCTCCAGGCCTCTGGTATTCATACTTTACTTGCTGACAATTCGGGAATTGAGCAACAAAATCAACAATGTCACGCTTAATCATACTCCACCAAAAATATTGCTTTAGATCACGATACATCTTGGTTGCACCAGGATGTATAGAATACCTTGAACTATGGGCCTCCGTAAGAATAGTGTGAATCAAATCATCGACGCGGGGTACACATACCCTTCCCTTAATTCTCAAAACACCTTTCTCATCAATTTTTGCTTCTTTAGCCTCTCCTCGCAACACCTTATCTCGGATCCGGATCAGTTTCTCATCGGTAAACTGCTTTCCTTTGATCTTATCAAGAAAGGAAGATCTTGCCTCCACACAGGCCAAAAATCCTCCCTTCTCATTTACTTCTAGCCTCATAAGGTCATTAGCCAAAGTCTGAACCTCTCTAGCCAATGGGCGTCTAGGAACCTGCAAGTGGGCTAGGCTTCCCATGCTCCCTGCCTTTCTACTTAAGGCATCTGCCACCACATTAGCCTTTCCCGGATGATACAAGATAGTGATAATCATAGTCCTTCAGTAGTTCCATCCATCTCCTCTGTCTCAAATTCAAATCTTTCTGAGTAAAGACATACTGTAAACTACGATGATCCATATAGACTTCACACTTAACCCCATATAGATAATGCCTCCATTGCTTTAATGCAAACACTACTGCTTCTAACTCCAAATCGTGGGTCGGATAATTACGTTCATGCACTTTTAATTG</gDNA_template>
            <first_frame> T  *  F  S  M  Q  C  F  P  K  L  R  S  K  L  R  T  S  I  S  Y  D  G  E  W  N  S  M  Q  S  N  N  F  *  D  V  N  F  G  *  L  L  C  I  I  S  H  L  D  R  N  E  M  S  R  L  S  *  S  I  K  N  H  P  N  R  V  I  L  T  H  R  L  W  R  P  T  T  K  S  I  A  I  L  S  H  F  H  S  G  M  G  I  L  *  S  V  P  P  G  L  W  Y  S  Y  F  T  C  *  Q  F  G  N  *  A  T  K  S  T  M  S  R  L  I  I  L  H  Q  K  Y  C  F  R  S  R  Y  I  L  V  A  P  G  C  I  E  Y  L  E  L  W  A  S  V  R  I  V  *  I  K  S  S  T  R  G  T  H  T  L  P  L  I  L  K  T  P  F  S  S  I  F  A  S  L  A  S  P  R  N  T  L  S  R  I  R  I  S  F  S  S  V  N  C  F  P  L  I  L  S  R  K  E  D  L  A  S  T  Q  A  K  N  P  P  F  S  F  T  S  S  L  I  R  S  L  A  K  V  *  T  S  L  A  N  G  R  L  G  T  C  K  W  A  R  L  P  M  L  P  A  F  L  L  K  A  S  A  T  T  L  A  F  P  G  *  Y  K  I  V  I  I  I  V  L  Q  *  F  H  P  S  P  L  S  Q  I  Q  I  F  L  S  K  D  I  L  *  T  T  M  I  H  I  D  F  T  L  N  P  I  *  I  M  P  P  L  L  *  C  K  H  Y  C  F  *  L  Q  I  V  G  R  I  I  T  F  M  H  F  *  L </first_frame>
            <second_frame>  P  N  S  A  C  N  V  F  Q  N  L  E  V  N  C  V  P  L  S  H  M  M  E  S  G  T  P  C  N  R  T  I  S  E  M  *  I  L  A  N  F  S  A  L  *  V  T  L  T  G  M  K  *  A  D  L  V  N  L  S  K  I  T  Q  I  E  S  Y  L  L  I  V  F  G  D  Q  P  R  S  P  L  Q  F  S  P  T  S  I  Q  E  W  A  F  S  E  V  S  L  Q  A  S  G  I  H  T  L  L  A  D  N  S  G  I  E  Q  Q  N  Q  Q  C  H  A  *  S  Y  S  T  K  N  I  A  L  D  H  D  T  S  W  L  H  Q  D  V  *  N  T  L  N  Y  G  P  P  *  E  *  C  E  S  N  H  R  R  G  V  H  I  P  F  P  *  F  S  K  H  L  S  H  Q  F  L  L  L  *  P  L  L  A  T  P  Y  L  G  S  G  S  V  S  H  R  *  T  A  F  L  *  S  Y  Q  E  R  K  I  L  P  P  H  R  P  K  I  L  P  S  H  L  L  L  A  S  *  G  H  *  P  K  S  E  P  L  *  P  M  G  V  *  E  P  A  S  G  L  G  F  P  C  S  L  P  F  Y  L  R  H  L  P  P  H  *  P  F  P  D  D  T  R  *  *  *  S  *  S  F  S  S  S  I  H  L  L  C  L  K  F  K  S  F  *  V  K  T  Y  C  K  L  R  *  S  I  *  T  S  H  L  T  P  Y  R  *  C  L  H  C  F  N  A  N  T  T  A  S  N  S  K  S  W  V  G  *  L  R  S  C  T  F  N   </second_frame>
            <third_frame>   L  I  Q  H  A  M  F  S  K  T  *  K  *  T  A  Y  L  Y  L  I  *  W  R  V  E  L  H  A  I  E  Q  F  L  R  C  K  F  W  L  T  S  L  H  Y  K  S  P  *  P  E  *  N  E  Q  T  *  L  I  Y  Q  K  S  P  K  *  S  H  T  Y  S  S  S  L  E  T  N  H  E  V  H  C  N  S  L  P  L  P  F  R  N  G  H  S  L  K  C  P  S  R  P  L  V  F  I  L  Y  L  L  T  I  R  E  L  S  N  K  I  N  N  V  T  L  N  H  T  P  P  K  I  L  L  *  I  T  I  H  L  G  C  T  R  M  Y  R  I  P  *  T  M  G  L  R  K  N  S  V  N  Q  I  I  D  A  G  Y  T  Y  P  S  L  N  S  Q  N  T  F  L  I  N  F  C  F  F  S  L  S  S  Q  H  L  I  S  D  P  D  Q  F  L  I  G  K  L  L  S  F  D  L  I  K  K  G  R  S  C  L  H  T  G  Q  K  S  S  L  L  I  Y  F  *  P  H  K  V  I  S  Q  S  L  N  L  S  S  Q  W  A  S  R  N  L  Q  V  G  *  A  S  H  A  P  C  L  S  T  *  G  I  C  H  H  I  S  L  S  R  M  I  Q  D  S  D  N  H  S  P  S  V  V  P  S  I  S  S  V  S  N  S  N  L  S  E  *  R  H  T  V  N  Y  D  D  P  Y  R  L  H  T  *  P  H  I  D  N  A  S  I  A  L  M  Q  T  L  L  L  L  T  P  N  R  G  S  D  N  Y  V  H  A  L  L  I  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133135" stop="133374"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>IKSSTRGTHTLPLILKTPFSSIFASLASPRNTLSRIRISFSSVNCFPLILSRKEDLASTQAKNPPFSFTSSLIRSLAKV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="133107" stop="133346"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>237</number_coding_nucleotides>
                  <number_encoded_amino_acids>79</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>TMGLRKNSVNQIIDAGYTYPSLNSQNTFLINFCFFSLSSQHLISDPDQFLIGKLLSFDLIKKGRSCLHTGQKSSLLIYF*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="3"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132824" stop="133033"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>207</number_coding_nucleotides>
                  <number_encoded_amino_acids>69</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>ADLVNLSKITQIESYLLIVFGDQPRSPLQFSPTSIQEWAFSEVSLQASGIHTLLADNSGIEQQNQQCHA*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0076I13.1" strand="+"/>
                <serials PGL_serial="14" AGS_serial="1" PPS_serial="4"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="132861" stop="133061"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>198</number_coding_nucleotides>
                  <number_encoded_amino_acids>66</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SHTYSSSLETNHEVHCNSLPLPFRNGHSLKCPSRPLVFILYLLTIRELSNKINNVTLNHTPPKILL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 84 chains have been computed
$ 
$ memory statistics:
$ 46024 bytes spliced alignments in total
$ 21 spliced alignments have been stored
$ 2191 bytes was the average size of a spliced alignment
$ 22024 bytes predicted gene locations in total
$ 14 predicted gene locations have been stored
$ 1573 bytes was the average size of a predicted gene location
$ 8 megabytes was the average size of the backtrace matrix
$ 109 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 05:44:34
-->
