<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 05:29:43"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E286708" ref_strand="+" ref_description="SGN-E286708 [cLES-14-D9]">
      <seq>tcgcgaggtccgtcatggtcacgacggaccgtcatggactccgtcgtcccatacttatgcaatttcttttgttgctcttcttcattaccctcaacggcaagtatggcggaccgtcataggcacaacggtccgtcgagggccttcgttccaaaacactttaactcttggaatatgggtactgggattacttctctgaacttcatgacgaacctgtaggacggaccgtcatagacacgatggaccgtcacaagcttcgtaaccccatacttggtcagacttccccatcttccttcagcagctgcactacgctgacacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtctcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaataaaaagaaactaatatagaaattagcacaaaaaggattttagacacactaaacttaaggaaaaagtattaataataccatgaaaccacggtatatcacttggccacca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="+" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="13108" stop="14228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13407" g_stop="13920" g_length="514"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="515" r_length="515" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="+" ref_id="SGN-E286708" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>514</cumulative_length_of_scored_exons>
        <coverage percentage="0.963" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E286708" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13407" e_stop="13920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGCGACGGACCGTCGTGGTCACGACGGACCGTCATGGACTTCGTCGTCCCATACTTA-GCAATTTCTTCTGCTGCTC-TCTTCATTCCCCTCAACCGCAAGTATGACGGACTATCATAGGCACAACGATCCGTCGAGGGTCTTCGTTTCAAAATACTTCAACTCTTGGAATCTGGGTACTGGGACCACTTCTCTGATCTTCACGACGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAGCCTTCCCCATCTTCCTTCAGCAGCTGCACCACGCTGCCACCTACGGACCGTCACAGGAACGACGGACCGTCATAAGCTCCATAGGTGGTATCTTCTGCATTTTTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCTTGCAAAACAAAGAGAAACTTATATAAAAATTAGCACAAAAAGGCTTTCAGACACACTAAACTTAAGGAAAAAGTATTCATTATACCGTGAAACCACG</genome_strand>
        <mrna_strand>TCGCGA-GGTCCGTCATGGTCACGACGGACCGTCATGGACTCCGTCGTCCCATACTTATGCAATTTCTTTTGTTGCTCTTCTTCATTACCCTCAACGGCAAGTATGGCGGACCGTCATAGGCACAACGGTCCGTCGAGGGCCTTCGTTCCAAAACACTTTAACTCTTGGAATATGGGTACTGGGATTACTTCTCTGAACTTCATGACGAACCTGTAGGACGGACCGTCATAGACACGATGGACCGTCACAAGCTTCGTAACCCCATACTTGGTCAGACTTCCCCATCTTCCTTCAGCAGCTGCACTACGCTGACACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTCTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAATAAAAAGAAACTAATATAGAAATTAGCACAAAAAGGATTTTAGACACACTAAACTTAAGGAAAAAGTATTAATAATACCATGAAACCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E578039" ref_strand="+" ref_description="SGN-E578039 [LE08DB10]">
      <seq>cgagggtctttgttctaatacacttcaactcttggaatttgggtactgggatcacttctctgaacttcacgacgaacctgcaggacggaccgtcagatccacgacggaccgtcacaagcttcgtaatcccacacttagtcagacttccctatcttccttcagcagctgcactacgcttccacctacggaccgtcacaagcacgacggaccgtcataagctccgtaggtggtttcttctgcatttcttcgctcaaaatctccgcattcagctttggacagatttcctgcaaaacaaagagtaacttatataaaaattagcacaaaaaggcttttggacacactaagcttaaggaaaaagtattaataataccgtgaaaccacggtatatcaacaccctcaacttaaattagttgtttgtcctcaagcgacgcactatgactcactacacaatctttgtacaatagtatccatgttttatcctttgcaatcatttggctatcaatcccgattaatctcatcaaatctatgcatgctatcactattaggtttgaattttgtgggatcagaatatgacacagacttaccatgcactaacacctatcctcttcaatttctcaccgaggtgctaacaattctagtattgcaactagtgtcctcactataagacaaaatcctcctttttcacacagtgattttagtttgagtataaggattac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="+" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="13239" stop="14554"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13539" g_stop="14254" g_length="716"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="716" r_length="716" r_score="0.933"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="+" ref_id="SGN-E578039" ref_strand="+">
        <total_alignment_score>0.933</total_alignment_score>
        <cumulative_length_of_scored_exons>716</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E578039" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13539" e_stop="14254"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGAGGGTCTTCGTTTCAAAATACTTCAACTCTTGGAATCTGGGTACTGGGACCACTTCTCTGATCTTCACGACGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAGCCTTCCCCATCTTCCTTCAGCAGCTGCACCACGCTGCCACCTACGGACCGTCACAGGAACGACGGACCGTCATAAGCTCCATAGGTGGTATCTTCTGCATTTTTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCTTGCAAAACAAAGAGAAACTTATATAAAAATTAGCACAAAAAGGCTTTCAGACACACTAAACTTAAGGAAAAAGTATTCATTATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTTGTTGCTTGTCCTCAAACGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATTCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATAACTATTAGGCTTGAATTTTGTAGGATTCGAACATGACACAGACTCACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCCGGTATTGCAACTAGTGTCCTCACTTCAAAACAAAATCCTCATTTTTCACACAATGATTTCAGTTTGAGTATAAGGATAAC</genome_strand>
        <mrna_strand>CGAGGGTCTTTGTTCTAATACACTTCAACTCTTGGAATTTGGGTACTGGGATCACTTCTCTGAACTTCACGACGAACCTGCAGGACGGACCGTCAGATCCACGACGGACCGTCACAAGCTTCGTAATCCCACACTTAGTCAGACTTCCCTATCTTCCTTCAGCAGCTGCACTACGCTTCCACCTACGGACCGTCACAAGCACGACGGACCGTCATAAGCTCCGTAGGTGGTTTCTTCTGCATTTCTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCCTGCAAAACAAAGAGTAACTTATATAAAAATTAGCACAAAAAGGCTTTTGGACACACTAAGCTTAAGGAAAAAGTATTAATAATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTAGTTGTTTGTCCTCAAGCGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATCCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATCACTATTAGGTTTGAATTTTGTGGGATCAGAATATGACACAGACTTACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCTAGTATTGCAACTAGTGTCCTCACTATAAGACAAAATCCTCCTTTTTCACACAGTGATTTTAGTTTGAGTATAAGGATTAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E577891" ref_strand="+" ref_description="SGN-E577891 [LE08BA04]">
      <seq>ttcgtttcaaaatacttcagctcttggaatctgggtactggaatcacttctctgatcttcacgacgaacctgcaggacggaccgtcatagccatgacggaccgtcacaatcttcgtaatcccacacttggtgagacttccccatcttccttcagcagcttctctacgctgccacctacggagcgtcaaaggcacgatggaccgtcataagctcagtaggtggtctcttctacattttttcgctcaaaatctctgctttcagctttggacagatttcctgcaaaataaagagaaacttataccaaaattagcacaaaaaggcttacggacacactaaacttaaggcaaaagtattaattataccgtgaaaccacggtatatcagggacatgaactcgaaggccattgttggc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="+" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="13247" stop="14228"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="13547" g_stop="13920" g_length="374"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="374" r_length="374" r_score="0.928"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="+" ref_id="SGN-E577891" ref_strand="+">
        <total_alignment_score>0.928</total_alignment_score>
        <cumulative_length_of_scored_exons>374</cumulative_length_of_scored_exons>
        <coverage percentage="0.910" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E577891" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="13547" e_stop="13920"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTCGTTTCAAAATACTTCAACTCTTGGAATCTGGGTACTGGGACCACTTCTCTGATCTTCACGACGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAGCCTTCCCCATCTTCCTTCAGCAGCTGCACCACGCTGCCACCTACGGACCGTCACAGGAACGACGGACCGTCATAAGCTCCATAGGTGGTATCTTCTGCATTTTTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCTTGCAAAACAAAGAGAAACTTATATAAAAATTAGCACAAAAAGGCTTTCAGACACACTAAACTTAAGGAAAAAGTATTCATTATACCGTGAAACCACG</genome_strand>
        <mrna_strand>TTCGTTTCAAAATACTTCAGCTCTTGGAATCTGGGTACTGGAATCACTTCTCTGATCTTCACGACGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAATCTTCGTAATCCCACACTTGGTGAGACTTCCCCATCTTCCTTCAGCAGCTTCTCTACGCTGCCACCTACGGAGCGTCAAAGGCACGATGGACCGTCATAAGCTCAGTAGGTGGTCTCTTCTACATTTTTTCGCTCAAAATCTCTGCTTTCAGCTTTGGACAGATTTCCTGCAAAATAAAGAGAAACTTATACCAAAATTAGCACAAAAAGGCTTACGGACACACTAAACTTAAGGCAAAAGTATTAATTATACCGTGAAACCACG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E608899" ref_strand="+" ref_description="SGN-E608899 [24896]">
      <seq>ggaagatgcacttattgggaggtatgatcatcacacagagtttgctgtaggagttgatatgagcgttctcgttgaaggtctattggctagtacaggatgggatgaacttgtttatgtttggcaacatggaatggaccctagagcttcttgacaaagggaagtcaaacattttcttctttttacttttatctactttatgctaagagaggaagtgaataaactgtttatgtttggcaacatggaatggaaactgtttatgatgtcttctgttgaagttgtaagataatttgaagtttcattgtatttaaggttctggtaaaaccttgataaataacatttacaccaaacaactttgacgtttcagaaaatatgcactatattcaatccctttgggttctgtattgctttttggaatgttagttccctgaatttctttaatattattcagaattttatgaggggcagtgggtcaggtaaggattgaaaagaaggcacatacttctgatcggggtttagcgtgttttgtttataaaaaataacaaacggagatcctataagagagcttacagaacaggtactacatttcaaatatgtgcaatgccattttcactcaaatgccttcatccatacttcagtggaagatgcattcctgatcaagcacttagagtcatcctataagagaggcttacagaacatgcactacatttcaaatatgtgcaatggcattttcact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="76118" stop="74798"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75818" g_stop="75122" g_length="697"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="697" r_length="697" r_score="0.945"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-E608899" ref_strand="+">
        <total_alignment_score>0.945</total_alignment_score>
        <cumulative_length_of_scored_exons>697</cumulative_length_of_scored_exons>
        <coverage percentage="0.951" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E608899" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75818" e_stop="75122"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAGATGCACTTATTGGGAGGTATGATCATCACACAGAGTTTGCTGTAGGAGTTGATATGAGCGTTCTCGTTGAAGGTCTATTGGCTAGTACAGGATGGGATGAACTTGTTTATGTTTGGCAACATGGAATGGACCCTAGAGCTTCTTGACAAAGGGAAGTCAAACATTTTCTTCTTTTTACTTTTATGTACTTAATGCTAAGAGAGGAAGTGAATAAACTGCTTATGTTTGGAAACATGGAATGGGAACTATTTATGATGTCTGCTGTTGAAGTTGTAAAATAATTTGAAGTTTCATTGTATTTAAGATTTTGGTAAAACCTTGGTAAATGACATTTACACCAAACAGCTTTGATGTTTCAGAAAATATGCGCTATATGTCAATCACTTTGGGTTCTGTATGCTTTTTTGGAATGTCAATTCCCTGAATTTCTTTAACATTATTCAGAATTTTACGAGGGGCAGTGGGTCGGGTAAGGGTTGAAAAGAAGGCACATACTTCTGATCGGGGTTTAGCGTGTTCTGTTTATAAAAAATAACAAACGGAGATCCTATAAGAGAGCTTACAGAACAGGTACTTCATTTCAAATATGTGCAATGCCATTTTCACTCAAAGGCCTGCATTCATACTTCAGTGGAAGATTCGTCCCTGATCAAGCACTTAGAGTCATCCTATAAGAGA-GCGTACAGAACAGG</genome_strand>
        <mrna_strand>GGAAGATGCACTTATTGGGAGGTATGATCATCACACAGAGTTTGCTGTAGGAGTTGATATGAGCGTTCTCGTTGAAGGTCTATTGGCTAGTACAGGATGGGATGAACTTGTTTATGTTTGGCAACATGGAATGGACCCTAGAGCTTCTTGACAAAGGGAAGTCAAACATTTTCTTCTTTTTACTTTTATCTACTTTATGCTAAGAGAGGAAGTGAATAAACTGTTTATGTTTGGCAACATGGAATGGAAACTGTTTATGATGTCTTCTGTTGAAGTTGTAAGATAATTTGAAGTTTCATTGTATTTAAGGTTCTGGTAAAACCTTGATAAATAACATTTACACCAAACAACTTTGACGTTTCAGAAAATATGCACTATAT-TCAATCCCTTTGGGTTCTGTATTGCTTTTTGGAATGTTAGTTCCCTGAATTTCTTTAATATTATTCAGAATTTTATGAGGGGCAGTGGGTCAGGTAAGGATTGAAAAGAAGGCACATACTTCTGATCGGGGTTTAGCGTGTTTTGTTTATAAAAAATAACAAACGGAGATCCTATAAGAGAGCTTACAGAACAGGTACTACATTTCAAATATGTGCAATGCCATTTTCACTCAAATGCCTTCATCCATACTTCAGTGGAAGATGCATTCCTGATCAAGCACTTAGAGTCATCCTATAAGAGAGGCTTACAGAACATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E354588" ref_strand="+" ref_description="SGN-E354588 [cTOS-17-B23]">
      <seq>cttgttcatatgacatgacagtttgcatgtgggattacatggtggaagatgcacttattgggaggtatgatcatcacacagagtttgctgtaggagttgatatgagcgttctcgttgaaggtctattggctagtacaggatgggatgaacttgtttatgtttggcaacatggaatggaccctagagcttcttgacaaagggaagtcaaacattttcttctttttacttttatgtacttaatgctaagagaggaagtgaataaactgcttatgtttggaaacatggaatgggaactatttatgatgtctgctgttgaagttgtaaaataatttgaagtttcattgtatttaagattttggtaaaaccttggtaaatgacatttacaccaaacagctttgatgtttcagaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="76161" stop="75149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75861" g_stop="75445" g_length="417"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="417" r_length="417" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-E354588" ref_strand="+">
        <total_alignment_score>0.988</total_alignment_score>
        <cumulative_length_of_scored_exons>417</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E354588" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75861" e_stop="75445"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTGTTCATATGACATGACAGTTTGCATGTGGGATTACATGGTGGAAGATGCACTTATTGGGAGGTATGATCATCACACAGAGTTTGCTGTAGGAGTTGATATGAGCGTTCTCGTTGAAGGTCTATTGGCTAGTACAGGATGGGATGAACTTGTTTATGTTTGGCAACATGGAATGGACCCTAGAGCTTCTTGACAAAGGGAAGTCAAACATTTTCTTCTTTTTACTTTTATGTACTTAATGCTAAGAGAGGAAGTGAATAAACTGCTTATGTTTGGAAACATGGAATGGGAACTATTTATGATGTCTGCTGTTGAAGTTGTAAAATAATTTGAAGTTTCATTGTATTTAAGATTTTGGTAAAACCTTGGTAAATGACATTTACACCAAACAGCTTTGATGTTTCAGAAAATATGCG</genome_strand>
        <mrna_strand>CTTGTTCATATGACATGACAGTTTGCATGTGGGATTACATGGTGGAAGATGCACTTATTGGGAGGTATGATCATCACACAGAGTTTGCTGTAGGAGTTGATATGAGCGTTCTCGTTGAAGGTCTATTGGCTAGTACAGGATGGGATGAACTTGTTTATGTTTGGCAACATGGAATGGACCCTAGAGCTTCTTGACAAAGGGAAGTCAAACATTTTCTTCTTTTTACTTTTATGTACTTAATGCTAAGAGAGGAAGTGAATAAACTGCTTATGTTTGGAAACATGGAATGGGAACTATTTATGATGTCTGCTGTTGAAGTTGTAAAATAATTTGAAGTTTCATTGTATTTAAGATTTTGGTAAAACCTTGGTAAATGACATTTACACCAAACAGCTTTGATGTTTCAGAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E544598" ref_strand="+" ref_description="SGN-E544598 [TUS-67-A6](-)">
      <seq>gttgatagaaatgccagtgtaaggacttttaaggaacatgcttattgtgtctattccgctgcttggaatccaagacatgctgatatctttgcatctgcttctggggattgtactactcgcatctgggatgtccgcgaaccaggttctacaatgattctgcctgcacacgagtttgaaatcctcacatgtgattggagtaagtatgacgattgtatcattgcaactgcatccgttgataagtcaatcaaggtttgggatgttaggaattatagagtgccaatatcagtgcttaatgggcatggatatgcagtgaggaaagtgaggttttcaccacatagagcgagtgcaatggtttcttgttcatatgacatgacagtttgcatgtgggattacatggtggaagatgcacttattgggaggtatgatcatcacacagagtttgctgtaggagttgatatgagcgttctcgttgaaggtctattggctagtacaggatgggatgaacttgtttatgtttggcaacatggaatggaccctagagcttcttgacaaagggaagtcaaacattttcttctttttacttttatgtacttaatgctaagagaggaagtgaataaactgcttatgtttggaaacatggaatgggaactatttatgatgtctgctgttgaagttgtaaaataatttgaagtttcattgtatttaagattttggtaaaaccttggtaaatgacatttacaccaaacagctttgatgtttcagaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="76655" stop="75149"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76355" g_stop="76214" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="142" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76213" i_stop="76075" i_length="139">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76074" g_stop="75446" g_length="629"/>
          <reference_exon_boundary r_type="cDNA" r_start="143" r_stop="771" r_length="629" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-E544598" ref_strand="+">
        <total_alignment_score>0.995</total_alignment_score>
        <cumulative_length_of_scored_exons>771</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544598" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76355" e_stop="76214"/>
          <exon e_start="76074" e_stop="75446"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAGGTTAGCTTTGGATACATGTATTTGGCTGATCATACCTAAGAAAAATGATTCATTTCAACTGGTTTGACTAAGTTTTGATTAGTTTTTTAGGAGATTAATGATTTATCATTTTAACACGTATAATTCATGATTTGTGAAGGTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATCCTCACATGTGATTGGAGTAAGTATGACGATTGTATCATTGCAACTGCATCCGTTGATAAGTCAATCAAGGTTTGGGATGTTAGGAATTATAGAGTGCCAATATCAGTGCTTAATGGGCATGGATATGCAGTGAGGAAAGTGAGGTTTTCACCACATAGAGCGAGTGCAATGGTTTCTTGTTCATATGACATGACAGTTTGCATGTGGGATTACATGGTGGAAGATGCACTTATTGGGAGGTATGATCATCACACAGAGTTTGCTGTAGGAGTTGATATGAGCGTTCTCGTTGAAGGTCTATTGGCTAGTACAGGATGGGATGAACTTGTTTATGTTTGGCAACATGGAATGGACCCTAGAGCTTCTTGACAAAGGGAAGTCAAACATTTTCTTCTTTTTACTTTTATGTACTTAATGCTAAGAGAGGAAGTGAATAAACTGCTTATGTTTGGAAACATGGAATGGGAACTATTTATGATGTCTGCTGTTGAAGTTGTAAAATAATTTGAAGTTTCATTGTATTTAAGATTTTGGTAAAACCTTGGTAAATGACATTTACACCAAACAGCTTTGATGTTTCAGAAAATATGC</genome_strand>
        <mrna_strand>GTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAG...........................................................................................................................................GTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATCCTCACATGTGATTGGAGTAAGTATGACGATTGTATCATTGCAACTGCATCCGTTGATAAGTCAATCAAGGTTTGGGATGTTAGGAATTATAGAGTGCCAATATCAGTGCTTAATGGGCATGGATATGCAGTGAGGAAAGTGAGGTTTTCACCACATAGAGCGAGTGCAATGGTTTCTTGTTCATATGACATGACAGTTTGCATGTGGGATTACATGGTGGAAGATGCACTTATTGGGAGGTATGATCATCACACAGAGTTTGCTGTAGGAGTTGATATGAGCGTTCTCGTTGAAGGTCTATTGGCTAGTACAGGATGGGATGAACTTGTTTATGTTTGGCAACATGGAATGGACCCTAGAGCTTCTTGACAAAGGGAAGTCAAACATTTTCTTCTTTTTACTTTTATGTACTTAATGCTAAGAGAGGAAGTGAATAAACTGCTTATGTTTGGAAACATGGAATGGGAACTATTTATGATGTCTGCTGTTGAAGTTGTAAAATAATTTGAAGTTTCATTGTATTTAAGATTTTGGTAAAACCTTGGTAAATGACATTTACACCAAACAGCTTTGATGTTTCAGAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E303446" ref_strand="+" ref_description="SGN-E303446 [cLEX-2-C21]">
      <seq>ccgttgataagtcaatcaaggtttgggatgttaggaattatagagtgccaatatcagtgcttaatgggcatggatatgcagtgaggaaagtgaggttttcaccacatagagcgagtgcaatggtttcttgttcatatgacatgacagtttgcatgtgggattacatggtggaagatgcacttattgggaggtatgatcatcacacagagtttgctgtaagagttgatatgagcgttctcgttgaaggtctattggctagtacaggatgggatgaacttgtttatgtttggcaacatggaatggaccctagagcttcttgacaaagggaagtcaaacattttcttctttttacttttatgtacttaatgctaagagaggaagtgaataaactgcttatgtttggaaacatggaatgggaactatttatgatgtctgctgttgaagttgtaaaataattcgaagtttcattgtatttaagattttggtaaaaccttggtaaatgacatttacaccaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="76287" stop="75170"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="75987" g_stop="75465" g_length="523"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="523" r_length="523" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-E303446" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>523</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E303446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="75987" e_stop="75465"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGTTGATAAGTCAATCAAGGTTTGGGATGTTAGGAATTATAGAGTGCCAATATCAGTGCTTAATGGGCATGGATATGCAGTGAGGAAAGTGAGGTTTTCACCACATAGAGCGAGTGCAATGGTTTCTTGTTCATATGACATGACAGTTTGCATGTGGGATTACATGGTGGAAGATGCACTTATTGGGAGGTATGATCATCACACAGAGTTTGCTGTAGGAGTTGATATGAGCGTTCTCGTTGAAGGTCTATTGGCTAGTACAGGATGGGATGAACTTGTTTATGTTTGGCAACATGGAATGGACCCTAGAGCTTCTTGACAAAGGGAAGTCAAACATTTTCTTCTTTTTACTTTTATGTACTTAATGCTAAGAGAGGAAGTGAATAAACTGCTTATGTTTGGAAACATGGAATGGGAACTATTTATGATGTCTGCTGTTGAAGTTGTAAAATAATTTGAAGTTTCATTGTATTTAAGATTTTGGTAAAACCTTGGTAAATGACATTTACACCAAACAGCTTT</genome_strand>
        <mrna_strand>CCGTTGATAAGTCAATCAAGGTTTGGGATGTTAGGAATTATAGAGTGCCAATATCAGTGCTTAATGGGCATGGATATGCAGTGAGGAAAGTGAGGTTTTCACCACATAGAGCGAGTGCAATGGTTTCTTGTTCATATGACATGACAGTTTGCATGTGGGATTACATGGTGGAAGATGCACTTATTGGGAGGTATGATCATCACACAGAGTTTGCTGTAAGAGTTGATATGAGCGTTCTCGTTGAAGGTCTATTGGCTAGTACAGGATGGGATGAACTTGTTTATGTTTGGCAACATGGAATGGACCCTAGAGCTTCTTGACAAAGGGAAGTCAAACATTTTCTTCTTTTTACTTTTATGTACTTAATGCTAAGAGAGGAAGTGAATAAACTGCTTATGTTTGGAAACATGGAATGGGAACTATTTATGATGTCTGCTGTTGAAGTTGTAAAATAATTCGAAGTTTCATTGTATTTAAGATTTTGGTAAAACCTTGGTAAATGACATTTACACCAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E745323" ref_strand="+" ref_description="SGN-E745323 [GI|47105755]">
      <seq>gggaaagtaaatcaccggcaacaatcaaatcagcgccgaccgctgtccgccgtccgccgaccgcctaagatgccggtatttaaaactccatttaacggttactccgtaaaattcagtcccttctacgaaaacaaactagctgtggccactgcgcagaatttcggcatccttggtaacgggagagttcacattcttcagctcaatccaaacggacggtatcggaacttgcggcttttgacacagctgatggagtttacgacgtttgctggtcggaagctcacgattcacttgttattgctggaagtggcgatggttctgtgaaactctatgacctttctttgcctcccaccaataaccctattcgttcttttaaggaacatacacgggaagttcactctgttgactataataccgtgagaaaagattccttcttgtcagcgtcttgggatgatactgtgaagctatggactgttgatagaaatgccagtgtaaggacttttaaggaacatgcttattgtgtctattccgctgcttggaatccaagacatgctgatatctttgcatctgcttctggggattgtactactcgcatctgggatgtccgcgaaccaggttctacaatgattctgcctgcacacgagtttgaaatcctcacatgtgattggagtaagtatgacgattgtatcattgcaactgcatccgttgataagtcaatcaaggtttgggatgttaggaattatagagtgccaatatcagtgcttaatgggcatggatatgcagtgaggaaagtgaggttttcaccacatagagcgagtgcaatggtttcttgttcatatgacatgacagtttgcatgtgggattacatggtggaagatgcacttattgggaggtatgatcatcacacagagtttgctgtaggagttgatatgagcgttctcgttgaaggtttattggctagtacaggatgggatgaacttgtttatgtttggcaacatggaatggaccctagagctttttgacaaagggaagtcaaacatttttttttttttacttttatgtacttaatgctaagagaggaagtgaataaactgcttatgtttggaaacatggaatgggaactatttatgatgtttgctgttgaagttgtaaaataatttgaagtttcattgtatttaagattttggtaaaaccttggtgaaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="77126" stop="75183"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76826" g_stop="76214" g_length="613"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="612" r_length="612" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76213" i_stop="76075" i_length="139">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76074" g_stop="75471" g_length="604"/>
          <reference_exon_boundary r_type="cDNA" r_start="613" r_stop="1216" r_length="604" r_score="0.974"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-E745323" ref_strand="+">
        <total_alignment_score>0.986</total_alignment_score>
        <cumulative_length_of_scored_exons>1217</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E745323" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76826" e_stop="76214"/>
          <exon e_start="76074" e_stop="75471"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAGTAAATCACCGGCAACAATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAGGTTAGCTTTGGATACATGTATTTGGCTGATCATACCTAAGAAAAATGATTCATTTCAACTGGTTTGACTAAGTTTTGATTAGTTTTTTAGGAGATTAATGATTTATCATTTTAACACGTATAATTCATGATTTGTGAAGGTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATCCTCACATGTGATTGGAGTAAGTATGACGATTGTATCATTGCAACTGCATCCGTTGATAAGTCAATCAAGGTTTGGGATGTTAGGAATTATAGAGTGCCAATATCAGTGCTTAATGGGCATGGATATGCAGTGAGGAAAGTGAGGTTTTCACCACATAGAGCGAGTGCAATGGTTTCTTGTTCATATGACATGACAGTTTGCATGTGGGATTACATGGTGGAAGATGCACTTATTGGGAGGTATGATCATCACACAGAGTTTGCTGTAGGAGTTGATATGAGCGTTCTCGTTGAAGGTCTATTGGCTAGTACAGGATGGGATGAACTTGTTTATGTTTGGCAACATGGAATGGACCCTAGAGCTTCTTGACAAAGGGAAGTCAAACATTTTCTTCTTTTTACTTTTATGTACTTAATGCTAAGAGAGGAAGTGAATAAACTGCTTATGTTTGGAAACATGGAATGGGAACTATTTATGATGTCTGCTGTTGAAGTTGTAAAATAATTTGAAGTTTCATTGTATTTAAGATTTTGGTAAAACCTTGGTAAATGACATTTACACCAAAC</genome_strand>
        <mrna_strand>GGGAAAGTAAATCACCGGCAACAATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGA-CGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAG...........................................................................................................................................GTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATCCTCACATGTGATTGGAGTAAGTATGACGATTGTATCATTGCAACTGCATCCGTTGATAAGTCAATCAAGGTTTGGGATGTTAGGAATTATAGAGTGCCAATATCAGTGCTTAATGGGCATGGATATGCAGTGAGGAAAGTGAGGTTTTCACCACATAGAGCGAGTGCAATGGTTTCTTGTTCATATGACATGACAGTTTGCATGTGGGATTACATGGTGGAAGATGCACTTATTGGGAGGTATGATCATCACACAGAGTTTGCTGTAGGAGTTGATATGAGCGTTCTCGTTGAAGGTTTATTGGCTAGTACAGGATGGGATGAACTTGTTTATGTTTGGCAACATGGAATGGACCCTAGAGCTTTTTGACAAAGGGAAGTCAAACATTTTTTTTTTTTTACTTTTATGTACTTAATGCTAAGAGAGGAAGTGAATAAACTGCTTATGTTTGGAAACATGGAATGGGAACTATTTATGATGTTTGCTGTTGAAGTTGTAAAATAATTTGAAGTTTCATTGTATTTAAGATTTTGGTAAAACCTTGGTGAAAAAAAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E712360" ref_strand="+" ref_description="SGN-E712360 [FB04CE08]">
      <seq>aaaagattccttcttgtcagcgtcttgggatgatactgtgaagctatggactgttgatagaaatgccagtgtaaggacttttaaggaacatgcttattgtgtctattccgctgcttggaatccaagacatgctgatatctttgcatctgcttctggggattgtactactcgcatctgggatgtccgcgaaccaggttctacaatgattctgcctgcacacgagtttgaaatcctcacatgtgattggagtaagtatgacgattgtatcattgcaactgcatccgttgataagtcaatcaaggtttgggatgttaggaattatagagtgccaatatcagtgcttaatgggcatggatatgcagtgaggaaagtgaggttttcaccacatagagcgagtgcaatggtttcttgttcatatgacatgacagtttgcatgtgggattacatggtggaagatgcacttattgggaggtatgatcatcacacagagtttgctgtaggagttgatatgagcgttctcgttgaaggtctattggctagtacaggatgggatgaacttgtttatgtttggcaacatggaatggaccctagagcttcttgacaaagggaagtcaaacattttcttctttttacttttatgtacttaatgctaagagaggaaatgaataaactgcttatgtttggaaacatggaatgggaactatttatgatgtctgctgttgaagttgtaaaataatttgaagtttcattg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="76707" stop="75218"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76407" g_stop="76214" g_length="194"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="194" r_length="194" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76213" i_stop="76075" i_length="139">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76074" g_stop="75518" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="195" r_stop="751" r_length="557" r_score="0.998"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-E712360" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>751</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E712360" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76407" e_stop="76214"/>
          <exon e_start="76074" e_stop="75518"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAGGTTAGCTTTGGATACATGTATTTGGCTGATCATACCTAAGAAAAATGATTCATTTCAACTGGTTTGACTAAGTTTTGATTAGTTTTTTAGGAGATTAATGATTTATCATTTTAACACGTATAATTCATGATTTGTGAAGGTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATCCTCACATGTGATTGGAGTAAGTATGACGATTGTATCATTGCAACTGCATCCGTTGATAAGTCAATCAAGGTTTGGGATGTTAGGAATTATAGAGTGCCAATATCAGTGCTTAATGGGCATGGATATGCAGTGAGGAAAGTGAGGTTTTCACCACATAGAGCGAGTGCAATGGTTTCTTGTTCATATGACATGACAGTTTGCATGTGGGATTACATGGTGGAAGATGCACTTATTGGGAGGTATGATCATCACACAGAGTTTGCTGTAGGAGTTGATATGAGCGTTCTCGTTGAAGGTCTATTGGCTAGTACAGGATGGGATGAACTTGTTTATGTTTGGCAACATGGAATGGACCCTAGAGCTTCTTGACAAAGGGAAGTCAAACATTTTCTTCTTTTTACTTTTATGTACTTAATGCTAAGAGAGGAAGTGAATAAACTGCTTATGTTTGGAAACATGGAATGGGAACTATTTATGATGTCTGCTGTTGAAGTTGTAAAATAATTTGAAGTTTCATTG</genome_strand>
        <mrna_strand>AAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAG...........................................................................................................................................GTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATCCTCACATGTGATTGGAGTAAGTATGACGATTGTATCATTGCAACTGCATCCGTTGATAAGTCAATCAAGGTTTGGGATGTTAGGAATTATAGAGTGCCAATATCAGTGCTTAATGGGCATGGATATGCAGTGAGGAAAGTGAGGTTTTCACCACATAGAGCGAGTGCAATGGTTTCTTGTTCATATGACATGACAGTTTGCATGTGGGATTACATGGTGGAAGATGCACTTATTGGGAGGTATGATCATCACACAGAGTTTGCTGTAGGAGTTGATATGAGCGTTCTCGTTGAAGGTCTATTGGCTAGTACAGGATGGGATGAACTTGTTTATGTTTGGCAACATGGAATGGACCCTAGAGCTTCTTGACAAAGGGAAGTCAAACATTTTCTTCTTTTTACTTTTATGTACTTAATGCTAAGAGAGGAAATGAATAAACTGCTTATGTTTGGAAACATGGAATGGGAACTATTTATGATGTCTGCTGTTGAAGTTGTAAAATAATTTGAAGTTTCATTG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E694293" ref_strand="+" ref_description="SGN-E694293 [LH_Ea03I19](-)">
      <seq>tttaaggaacatacacgggaagttcactctgttgactataataccgtgagaaaagattccttcttgtcagcgtcttgggatgataccgtgaagctatggactgttgatagaaatgccagtgtaaggacttttaaggaacatgcttattgtgtctattccgctgcttggaatccaagacatgctgatatctttgcatctgcttctggggattgtactactcgcatctgggatgtccgcgaaccaggttctacaatgattctgcctgcgcacgagtttgaaatcctcacatgtgattggagtaagtatgacgattgtatcattgcaactgcgtccgttgataagtcaatcaaggtttgggatgttaggaattatagagtgccaatatcagtgcttaatgggcatggatatgcagtgaggaaagtgaggttttcaccacatagagcaagtgcaatggtttcttgttcatatgacatgacagtttgcatgtgggattacatggtggaagatgcacttattgggaggtatgatcatcacccagagtttgctgtaggagttgatatgagcgttctcgttgaaggtttattggctagtacaggatgggatgaacttgtttatgtttggcaacatggaatggaccctagagcttcttgacaaagggaagtcaaacattttcttctttttacttttatgtacttaatgctaagagtggaagtgaataaactgcttatgtttggaaacatggaatgggaactatttatgatgtctgctgttgaagttgtaaattaaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="76757" stop="75233"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76457" g_stop="76214" g_length="244"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="244" r_length="244" r_score="0.996"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76213" i_stop="76075" i_length="139">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76074" g_stop="75537" g_length="538"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="782" r_length="538" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="785" polyA_stop="802"/>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-E694293" ref_strand="+">
        <total_alignment_score>0.991</total_alignment_score>
        <cumulative_length_of_scored_exons>782</cumulative_length_of_scored_exons>
        <coverage percentage="0.975" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E694293" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76457" e_stop="76214"/>
          <exon e_start="76074" e_stop="75537"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAGGTTAGCTTTGGATACATGTATTTGGCTGATCATACCTAAGAAAAATGATTCATTTCAACTGGTTTGACTAAGTTTTGATTAGTTTTTTAGGAGATTAATGATTTATCATTTTAACACGTATAATTCATGATTTGTGAAGGTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATCCTCACATGTGATTGGAGTAAGTATGACGATTGTATCATTGCAACTGCATCCGTTGATAAGTCAATCAAGGTTTGGGATGTTAGGAATTATAGAGTGCCAATATCAGTGCTTAATGGGCATGGATATGCAGTGAGGAAAGTGAGGTTTTCACCACATAGAGCGAGTGCAATGGTTTCTTGTTCATATGACATGACAGTTTGCATGTGGGATTACATGGTGGAAGATGCACTTATTGGGAGGTATGATCATCACACAGAGTTTGCTGTAGGAGTTGATATGAGCGTTCTCGTTGAAGGTCTATTGGCTAGTACAGGATGGGATGAACTTGTTTATGTTTGGCAACATGGAATGGACCCTAGAGCTTCTTGACAAAGGGAAGTCAAACATTTTCTTCTTTTTACTTTTATGTACTTAATGCTAAGAGAGGAAGTGAATAAACTGCTTATGTTTGGAAACATGGAATGGGAACTATTTATGATGTCTGCTGTTGAAGTTGTAAA</genome_strand>
        <mrna_strand>TTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACCGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAG...........................................................................................................................................GTTCTACAATGATTCTGCCTGCGCACGAGTTTGAAATCCTCACATGTGATTGGAGTAAGTATGACGATTGTATCATTGCAACTGCGTCCGTTGATAAGTCAATCAAGGTTTGGGATGTTAGGAATTATAGAGTGCCAATATCAGTGCTTAATGGGCATGGATATGCAGTGAGGAAAGTGAGGTTTTCACCACATAGAGCAAGTGCAATGGTTTCTTGTTCATATGACATGACAGTTTGCATGTGGGATTACATGGTGGAAGATGCACTTATTGGGAGGTATGATCATCACCCAGAGTTTGCTGTAGGAGTTGATATGAGCGTTCTCGTTGAAGGTTTATTGGCTAGTACAGGATGGGATGAACTTGTTTATGTTTGGCAACATGGAATGGACCCTAGAGCTTCTTGACAAAGGGAAGTCAAACATTTTCTTCTTTTTACTTTTATGTACTTAATGCTAAGAGTGGAAGTGAATAAACTGCTTATGTTTGGAAACATGGAATGGGAACTATTTATGATGTCTGCTGTTGAAGTTGTAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E747531" ref_strand="+" ref_description="SGN-E747531 [GI|28195238]">
      <seq>atgccggtatttaaaactccatttaacggttactccgtaaaattcagtcccttctacgaaaacaaactagctgtggccactgcgcagaatttcggcatccttggtaacgggagagttcacattcttcagctcaatccaaacggaccggtatcggaacttgcggcttttgacacagctgatggagtttacgacgtttgctggtcggaagctcacgattcacttgttattgctggaagtggcgatggttctgtgaaactctatgacctttctttgcctcccaccaataaccctattcgttcttttaaggaacatacacgggaagttcactctgttgactataataccgtgagaaaagattccttcttgtcagcgtcttgggatgatactgtgaagctatggactgttgatagaaatgccagtgtaaggacttttaaggaacatgcttattgtgtctattccgctgcttggaatccaagacatgctgatatctttgcatctgcttctggggattgtactactcgcatctgggatgtccgcgaaccaggttctacaatgattctgcctgcacacgagtttgaaatcctcacatgtgattggagtaagtatgacgattgtatcattgcaactgcatccgttgataagtcaatcaaggtttgggatgttaggaattatagagtgccaatatcagtgcttaatgggcatggatatgcagtgaggaaagtgaggttttcaccacatagagcgagtgcaatggtttcttgttcatatgacatgacagtttgcatgtgggattacatggtggaagatgcacttattgggaggtatgatcatcacacagagtttgctgtaggagttgatatgatgagcgttctcgttgaaggtctattggctagtacaggatgggatgaacttgtttatgtttggcaacatggaatggaccctagagcttcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="77057" stop="75368"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76757" g_stop="76214" g_length="544"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="544" r_length="544" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76213" i_stop="76075" i_length="139">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76074" g_stop="75668" g_length="407"/>
          <reference_exon_boundary r_type="cDNA" r_start="545" r_stop="954" r_length="410" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-E747531" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>951</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E747531" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76757" e_stop="76214"/>
          <exon e_start="76074" e_stop="75668"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAGGTTAGCTTTGGATACATGTATTTGGCTGATCATACCTAAGAAAAATGATTCATTTCAACTGGTTTGACTAAGTTTTGATTAGTTTTTTAGGAGATTAATGATTTATCATTTTAACACGTATAATTCATGATTTGTGAAGGTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATCCTCACATGTGATTGGAGTAAGTATGACGATTGTATCATTGCAACTGCATCCGTTGATAAGTCAATCAAGGTTTGGGATGTTAGGAATTATAGAGTGCCAATATCAGTGCTTAATGGGCATGGATATGCAGTGAGGAAAGTGAGGTTTTCACCACATAGAGCGAGTGCAATGGTTTCTTGTTCATATGACATGACAGTTTGCATGTGGGATTACATGGTGGAAGATGCACTTATTGGGAGGTATGATCATCACACAGAGTTTGCTGTAGGAGTTG--AT-ATGAGCGTTCTCGTTGAAGGTCTATTGGCTAGTACAGGATGGGATGAACTTGTTTATGTTTGGCAACATGGAATGGACCCTAGAGCTTCTTGA</genome_strand>
        <mrna_strand>ATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAG...........................................................................................................................................GTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATCCTCACATGTGATTGGAGTAAGTATGACGATTGTATCATTGCAACTGCATCCGTTGATAAGTCAATCAAGGTTTGGGATGTTAGGAATTATAGAGTGCCAATATCAGTGCTTAATGGGCATGGATATGCAGTGAGGAAAGTGAGGTTTTCACCACATAGAGCGAGTGCAATGGTTTCTTGTTCATATGACATGACAGTTTGCATGTGGGATTACATGGTGGAAGATGCACTTATTGGGAGGTATGATCATCACACAGAGTTTGCTGTAGGAGTTGATATGATGAGCGTTCTCGTTGAAGGTCTATTGGCTAGTACAGGATGGGATGAACTTGTTTATGTTTGGCAACATGGAATGGACCCTAGAGCTTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E700783" ref_strand="+" ref_description="SGN-E700783 [FA14AF04]">
      <seq>aaatcaccggcaacaatcaaatcagcgccgaccgctgtccgccgtccgccgaccgcctaagatgccggtatttaaaactccatttaacggttactccgtaaaattcagtcccttctacgaaaacaaactagctgtggccactgcgcagaatttcggcatccttggtaacgggagagttcacattcttcagctcaatccaaacggaccggtatcggaacttgcggcttttgacacagctgatggagtttacgacgtttgctggtcggaagctcacgattcacttgttattgctggaagtggcgatggttctgtgaaactctatgacctttctttgcctcccaccaataaccctattcgttcttttaaggaacatacacgggaagttcactctgttgactataataccgtgagaaaagattccttcttgtcagcgtcttgggatgatactgtgaagctatggactgttgatagaaatgccagtgtaaggacttttaaggaacatgcttattgtgtctattccgctgcttggaatccaagacatgctgatatctttgcatctgcttctggggattgtactactcgcatctgggatgtccgcgaaccaggttctacaatgattctgcctgcacacgagtttgaaatcctcacatgtgattggagtaagtatgacgattgtatcattgcaactgcatccgttgataagtcaatcaaggtttgggatgttaggaattatagagtgccaatatcagtgcttaatgggcatggatatgcagtgaggaaagtgaggttttcaccacatagagcgagtgcaatggtttcttgttcatatgacatgacagtttgcatgtgggattacatggtggaagatgcacttattgggaagtatgatcatcac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="77118" stop="75485"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76818" g_stop="76214" g_length="605"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="605" r_length="605" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76213" i_stop="76075" i_length="139">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76074" g_stop="75785" g_length="290"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="895" r_length="290" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-E700783" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>895</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E700783" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76818" e_stop="76214"/>
          <exon e_start="76074" e_stop="75785"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCACCGGCAACAATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAGGTTAGCTTTGGATACATGTATTTGGCTGATCATACCTAAGAAAAATGATTCATTTCAACTGGTTTGACTAAGTTTTGATTAGTTTTTTAGGAGATTAATGATTTATCATTTTAACACGTATAATTCATGATTTGTGAAGGTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATCCTCACATGTGATTGGAGTAAGTATGACGATTGTATCATTGCAACTGCATCCGTTGATAAGTCAATCAAGGTTTGGGATGTTAGGAATTATAGAGTGCCAATATCAGTGCTTAATGGGCATGGATATGCAGTGAGGAAAGTGAGGTTTTCACCACATAGAGCGAGTGCAATGGTTTCTTGTTCATATGACATGACAGTTTGCATGTGGGATTACATGGTGGAAGATGCACTTATTGGGAGGTATGATCATCAC</genome_strand>
        <mrna_strand>AAATCACCGGCAACAATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAG...........................................................................................................................................GTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATCCTCACATGTGATTGGAGTAAGTATGACGATTGTATCATTGCAACTGCATCCGTTGATAAGTCAATCAAGGTTTGGGATGTTAGGAATTATAGAGTGCCAATATCAGTGCTTAATGGGCATGGATATGCAGTGAGGAAAGTGAGGTTTTCACCACATAGAGCGAGTGCAATGGTTTCTTGTTCATATGACATGACAGTTTGCATGTGGGATTACATGGTGGAAGATGCACTTATTGGGAAGTATGATCATCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726467" ref_strand="+" ref_description="SGN-E726467 [LA11DF02]">
      <seq>caccggcaacaatcaaatcagcgccgaccgctgtccgccgtccgccgaccgcctaagatgccggtatttaaaactccatttaacggttactccgtaaaattcagtcccttctacgaaaacaaactagctgtggccactgcgcagaatttcggcatccttggtaacgggagagttcacattcttcagctcaatccaaacggaccggtatcggaacttgcggcttttgacacagctgatggagtttacgacgtttgctggtcggaagctcacgattcacttgttattgctggaagtggcgatggttctgtgaaactctatgacctttctttgcctcccaccaataaccctattcgttcttttaaggaacatacacgggaagttcactctgttgactataataccgtgagaaaagattccttcttgtcagcgtcttgggatgatactgtgaagctatggactgttgatagaaatgccagtgtaaggacttttaaggaacatgcttattgtgtctattccgctgcttggaatccaagacatgctgatatctttgcatctgcttctggggattgtactactcgcatctgggatgtccgcgaaccaggttctacaatgattctgcctgcacacgagtttgaaatcctcacatgtgattggagtaagtatgacgattgtatcattgcaactgcatccgttgataagtcaatcaaggtttgggatgttaggaattatagagtgccaatatcagtgcttaatgggcatggatatgcagtgaggaaagtgaggttttcaccacatagagcgagtgcaatggtttcttgttcatatgacatgacagtttgcatgtgggattacatggtggaagatgcacttattgggaggtatgatca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="77114" stop="75489"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76814" g_stop="76214" g_length="601"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="601" r_length="601" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76213" i_stop="76075" i_length="139">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76074" g_stop="75789" g_length="286"/>
          <reference_exon_boundary r_type="cDNA" r_start="602" r_stop="887" r_length="286" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-E726467" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>887</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726467" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76814" e_stop="76214"/>
          <exon e_start="76074" e_stop="75789"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CACCGGCAACAATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAGGTTAGCTTTGGATACATGTATTTGGCTGATCATACCTAAGAAAAATGATTCATTTCAACTGGTTTGACTAAGTTTTGATTAGTTTTTTAGGAGATTAATGATTTATCATTTTAACACGTATAATTCATGATTTGTGAAGGTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATCCTCACATGTGATTGGAGTAAGTATGACGATTGTATCATTGCAACTGCATCCGTTGATAAGTCAATCAAGGTTTGGGATGTTAGGAATTATAGAGTGCCAATATCAGTGCTTAATGGGCATGGATATGCAGTGAGGAAAGTGAGGTTTTCACCACATAGAGCGAGTGCAATGGTTTCTTGTTCATATGACATGACAGTTTGCATGTGGGATTACATGGTGGAAGATGCACTTATTGGGAGGTATGATCA</genome_strand>
        <mrna_strand>CACCGGCAACAATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAG...........................................................................................................................................GTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATCCTCACATGTGATTGGAGTAAGTATGACGATTGTATCATTGCAACTGCATCCGTTGATAAGTCAATCAAGGTTTGGGATGTTAGGAATTATAGAGTGCCAATATCAGTGCTTAATGGGCATGGATATGCAGTGAGGAAAGTGAGGTTTTCACCACATAGAGCGAGTGCAATGGTTTCTTGTTCATATGACATGACAGTTTGCATGTGGGATTACATGGTGGAAGATGCACTTATTGGGAGGTATGATCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E702892" ref_strand="+" ref_description="SGN-E702892 [FA20AA02]">
      <seq>gggaaaaccccttttacatcgggaaagtaaatcaccggcaacaatcaaatcagcgccgaccgctgtccgccgtccgccgaccgcctaagatgccggtatttaaaactccatttaacggttactccgtaaaattcagtcccttctacgaaaacaaactagctgtggccactgcgcagaatttcggcatccttggtaacgggagagttcacattcttcagctcaatccaaacggaccggtatcggaacttgcggcttttgacacagctgatggagtttacgacgtttgctggtcggaagctcacgattcacttgttattgctggaagtggcgatggttctgtgaaactctatgacctttctttgcctcccaccaataaccctattcgttcttttaaggaacatacacgggaagttcactctgttgactataataccgtgagaaaagattccttcttgtcagcgtcttgggatgatactgtgaagctatggactgttgatagaaatgccagtgtaaggacttttaaggaacatgcttattgtgtctattccgctgcttggaatccaagacatgctgatatctttgcatctgcttctggggattgtactactcgcatctgggatgtccgcgaaccaggttctacaatgattctgcctgcacacgagtttgaaatcctcacatgtgattggagtaagtatgacgattgtatcattgcaactgcatccgttgataagtcaatcaaggtttgggatgttaggaattatagagtgccaatatcagtgcttaatgggcatggatatgcagtgaggaaagtgaggttttcaccacatagagcgagtgcaatggtttcttgttcatatgacatgacagtttgcatgtgggattacatgggtgaagatgcacttattgggaggtatgatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="77146" stop="75490"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76846" g_stop="76214" g_length="633"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="633" r_length="633" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76213" i_stop="76075" i_length="139">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76074" g_stop="75790" g_length="285"/>
          <reference_exon_boundary r_type="cDNA" r_start="634" r_stop="918" r_length="285" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-E702892" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>918</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E702892" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76846" e_stop="76214"/>
          <exon e_start="76074" e_stop="75790"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGGAAAACCCCTTTTACATCGGGAAAGTAAATCACCGGCAACAATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAGGTTAGCTTTGGATACATGTATTTGGCTGATCATACCTAAGAAAAATGATTCATTTCAACTGGTTTGACTAAGTTTTGATTAGTTTTTTAGGAGATTAATGATTTATCATTTTAACACGTATAATTCATGATTTGTGAAGGTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATCCTCACATGTGATTGGAGTAAGTATGACGATTGTATCATTGCAACTGCATCCGTTGATAAGTCAATCAAGGTTTGGGATGTTAGGAATTATAGAGTGCCAATATCAGTGCTTAATGGGCATGGATATGCAGTGAGGAAAGTGAGGTTTTCACCACATAGAGCGAGTGCAATGGTTTCTTGTTCATATGACATGACAGTTTGCATGTGGGATTACATGGTGGAAGATGCACTTATTGGGAGGTATGATC</genome_strand>
        <mrna_strand>GGGAAAACCCCTTTTACATCGGGAAAGTAAATCACCGGCAACAATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAG...........................................................................................................................................GTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATCCTCACATGTGATTGGAGTAAGTATGACGATTGTATCATTGCAACTGCATCCGTTGATAAGTCAATCAAGGTTTGGGATGTTAGGAATTATAGAGTGCCAATATCAGTGCTTAATGGGCATGGATATGCAGTGAGGAAAGTGAGGTTTTCACCACATAGAGCGAGTGCAATGGTTTCTTGTTCATATGACATGACAGTTTGCATGTGGGATTACATGGGTGAAGATGCACTTATTGGGAGGTATGATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E705865" ref_strand="+" ref_description="SGN-E705865 [FA28BE01]">
      <seq>cggcaacaatcaaatcagcgccgaccgctgtccgccgtccgccgaccgcctaagatgccggtatttaaaactccatttaacggttactccgtaaaattcagtcccttctacgaaaacaaactagctgtggccactgcgcagaatttcggcatccttggtaacgggagagttcacattcttcagctcaatccaaacggaccggtatcggaacttgcggcttttgacacagctgatggagtttacgacgtttgctggtcggaagctcacgattcacttgttattgctggaagtggcgatggttctgtgaaactctatgacctttctttgcctcccaccaataaccctattcgttcttttaaggaacatacacgggaagttcactctgttgactataataccgtgagaaaagattccttcttgtcagcgtcttgggatgatactgtgaagctatggactgttgatagaaatgccagtgtaaggacttttaaggaacatgcttattgtgtctattccgctgcttggaatccaagacatgctgatatctttgcatctgcttctggggattgtactactcgcatctgggatgtccgcgaaccaggttctacaatgattctgcctgcacacgagtttgaaatcctcacatgtgattggagtaagtatgacgattgtatcattgcaactgcatccgttgataagtcaatcaaggtttgggatgttaggaattatagagtgccaatatcagtgcttaatgggcatggatatgcagtgaggaaagtgaggatttcaccacatagagcgagtgcaatggtttcttgttcatatgacatgacagtttgcatgtgggatta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="77111" stop="75525"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76811" g_stop="76214" g_length="598"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="598" r_length="598" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76213" i_stop="76075" i_length="139">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76074" g_stop="75825" g_length="250"/>
          <reference_exon_boundary r_type="cDNA" r_start="599" r_stop="848" r_length="250" r_score="0.996"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-E705865" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>848</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E705865" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76811" e_stop="76214"/>
          <exon e_start="76074" e_stop="75825"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGGCAACAATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAGGTTAGCTTTGGATACATGTATTTGGCTGATCATACCTAAGAAAAATGATTCATTTCAACTGGTTTGACTAAGTTTTGATTAGTTTTTTAGGAGATTAATGATTTATCATTTTAACACGTATAATTCATGATTTGTGAAGGTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATCCTCACATGTGATTGGAGTAAGTATGACGATTGTATCATTGCAACTGCATCCGTTGATAAGTCAATCAAGGTTTGGGATGTTAGGAATTATAGAGTGCCAATATCAGTGCTTAATGGGCATGGATATGCAGTGAGGAAAGTGAGGTTTTCACCACATAGAGCGAGTGCAATGGTTTCTTGTTCATATGACATGACAGTTTGCATGTGGGATTA</genome_strand>
        <mrna_strand>CGGCAACAATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAG...........................................................................................................................................GTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATCCTCACATGTGATTGGAGTAAGTATGACGATTGTATCATTGCAACTGCATCCGTTGATAAGTCAATCAAGGTTTGGGATGTTAGGAATTATAGAGTGCCAATATCAGTGCTTAATGGGCATGGATATGCAGTGAGGAAAGTGAGGATTTCACCACATAGAGCGAGTGCAATGGTTTCTTGTTCATATGACATGACAGTTTGCATGTGGGATTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E726975" ref_strand="+" ref_description="SGN-E726975 [LA13BE01]">
      <seq>ggacgattttgggggaaaaccccttttacatcgggaaagtaaatcaccggcaacaatcaaatcagcgccgaccgctgtccgccgtccgccgaccgcctaagatgccggtatttaaaactccatttaacggttactccgtaaaattcagtcccttctacgaaaacaaactagctgtggccactgcgcagaatttcggcatccttggtaacgggagagttcacattcttcagctcaatccaaacggaccggtatcggaacttgcggcttttgacacagctgatggagtttacgacgtttgctggtcggaagctcacgattcacttgttattgctggaagtggcgatggttctgtgaaactctatgacctttctttgcctcccaccaataaccctattcgttcttttaaggaacatacacgggaagttcactctgttgactataataccgtgagaaaagattccttcttgtcagcgtcttgggatgatactgtgaagctatggactgttgatagaaatgccagtgtaaggacttttaaggaacatgcttattgtgtctattccgctgcttggaatccaagacatgctgatatctttgcatctgcttctggggattgtactactcgcatctgggatgtccgcgaaccaggttctacaatgattctgcctgcacacgagtttgaaatcctcacatgtgattggagtaagtatgacgattgtatcattgncactgcatccgttgataagtcaatcaaggtttgggatgttaggaattatagagtgccaatatcagtgcttaatgggcatggatatgcagtgaggaaagtga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="77158" stop="75595"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76858" g_stop="76214" g_length="645"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="645" r_length="645" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76213" i_stop="76075" i_length="139">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76074" g_stop="75895" g_length="180"/>
          <reference_exon_boundary r_type="cDNA" r_start="646" r_stop="825" r_length="180" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-E726975" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>825</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E726975" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76858" e_stop="76214"/>
          <exon e_start="76074" e_stop="75895"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGACGATTTTGGGGGAAAACCCCTTTTACATCGGGAAAGTAAATCACCGGCAACAATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAGGTTAGCTTTGGATACATGTATTTGGCTGATCATACCTAAGAAAAATGATTCATTTCAACTGGTTTGACTAAGTTTTGATTAGTTTTTTAGGAGATTAATGATTTATCATTTTAACACGTATAATTCATGATTTGTGAAGGTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATCCTCACATGTGATTGGAGTAAGTATGACGATTGTATCATTGCAACTGCATCCGTTGATAAGTCAATCAAGGTTTGGGATGTTAGGAATTATAGAGTGCCAATATCAGTGCTTAATGGGCATGGATATGCAGTGAGGAAAGTGA</genome_strand>
        <mrna_strand>GGACGATTTTGGGGGAAAACCCCTTTTACATCGGGAAAGTAAATCACCGGCAACAATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAG...........................................................................................................................................GTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATCCTCACATGTGATTGGAGTAAGTATGACGATTGTATCATTGNCACTGCATCCGTTGATAAGTCAATCAAGGTTTGGGATGTTAGGAATTATAGAGTGCCAATATCAGTGCTTAATGGGCATGGATATGCAGTGAGGAAAGTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E544599" ref_strand="+" ref_description="SGN-E544599 [TUS-67-A6]">
      <seq>atcaaatcagcgccgaccgctgtccgccgtccgccgaccgcctaagatgccggtatttaaaactccatttaacggttactccgtaaaattcagtcccttctacgaaaacaaactagctgtggccactgcgcagaatttcggcatccttggtaacgggagagttcacattcttcagctcaatccaaacggaccggtatcggaacttgcggcttttgacacagctgatggagtttacgacgtttgctggtcggaagctcacgattcacttgttattgctggaagtggcgatggttctgtgaaactctatgacctttctttgcctcccaccaataaccctattcgttcttttaaggaacatacacgggaagttcactctgttgactataataccgtgagaaaagattccttcttgtcagcgtcttgggatgatactgtgaagctatggactgttgatagaaatgccagtgtaaggacttttaaggaacatgcttattgtgtctattccgctgcttggaatccaagacatgctgatatctttgcatctgcttctggggattgtactactcgcatctgggatgtccgcgaaccaggttctacaatgattctgcctgcacacgagtttgaaatcctcacatgtgattggagtaagtatgacgattgtatcattgcaactgcatccgttgataagtcaatcaaggtttgggatgttaggaattatagagtgccnatatcagtgcttaatgggcatggatatgcagtgaggaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="77103" stop="75599"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76803" g_stop="76214" g_length="590"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="590" r_length="590" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76213" i_stop="76075" i_length="139">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76074" g_stop="75899" g_length="176"/>
          <reference_exon_boundary r_type="cDNA" r_start="591" r_stop="766" r_length="176" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-E544599" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>766</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E544599" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76803" e_stop="76214"/>
          <exon e_start="76074" e_stop="75899"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAGGTTAGCTTTGGATACATGTATTTGGCTGATCATACCTAAGAAAAATGATTCATTTCAACTGGTTTGACTAAGTTTTGATTAGTTTTTTAGGAGATTAATGATTTATCATTTTAACACGTATAATTCATGATTTGTGAAGGTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATCCTCACATGTGATTGGAGTAAGTATGACGATTGTATCATTGCAACTGCATCCGTTGATAAGTCAATCAAGGTTTGGGATGTTAGGAATTATAGAGTGCCAATATCAGTGCTTAATGGGCATGGATATGCAGTGAGGAAA</genome_strand>
        <mrna_strand>ATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAG...........................................................................................................................................GTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATCCTCACATGTGATTGGAGTAAGTATGACGATTGTATCATTGCAACTGCATCCGTTGATAAGTCAATCAAGGTTTGGGATGTTAGGAATTATAGAGTGCCNATATCAGTGCTTAATGGGCATGGATATGCAGTGAGGAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E704593" ref_strand="+" ref_description="SGN-E704593 [FA24CH05]">
      <seq>ctcaaatacaggacgattttgggggaaaaccccttttacatcgggaaagtaaatcaccggcaacaatcaaatcagcgccgaccgctgtccgccgtccgccgaccgcctaagatgccggtatttaaaactccatttaacggttactccgtaaaattcagtcccttctacgaaaacaaactagctgtggccactgcgcagaatttcggcatccttggtaacgggagagttcacattcttcagctcaatccaaacggaccggtatcggaacttccggcttttgacacagctgatggagtttacgacgtttgctggtcggaagctcacgattcacttgttattgctggaagtggcgatggttctgtgaaactctatgacctttctttgcctcccaccaataaccctattcgttcttttaaggaacatacacgggaagttcactctgttgactataataccgtgagaaaagattccttcttgtcagcgtcttgggatgatactgtgaagctatggactgttgatagaaatgccagtgtaaggacttttaaggaacatgcttattgtgtctattccgctgcttggaatccaagacatgctgatatctttgcatctgcttctggggattgtactactcgcatctgggatgtccgcgaaccaggttctacaatgattctgcctgcacacgagtttgaaatcctcacatgtgattggagtaagtatgacgattgtatcattgcaactgcatccgttgataagtcaatcaaggtttgggatgttaggaattatagagtgccaatatcagtgcttaatgggcatggatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="77168" stop="75610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76868" g_stop="76214" g_length="655"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="655" r_length="655" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76213" i_stop="76075" i_length="139">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76074" g_stop="75910" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="656" r_stop="820" r_length="165" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-E704593" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>820</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E704593" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76868" e_stop="76214"/>
          <exon e_start="76074" e_stop="75910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTCAAATACAGGACGATTTTGGGGGAAAACCCCTTTTACATCGGGAAAGTAAATCACCGGCAACAATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAGGTTAGCTTTGGATACATGTATTTGGCTGATCATACCTAAGAAAAATGATTCATTTCAACTGGTTTGACTAAGTTTTGATTAGTTTTTTAGGAGATTAATGATTTATCATTTTAACACGTATAATTCATGATTTGTGAAGGTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATCCTCACATGTGATTGGAGTAAGTATGACGATTGTATCATTGCAACTGCATCCGTTGATAAGTCAATCAAGGTTTGGGATGTTAGGAATTATAGAGTGCCAATATCAGTGCTTAATGGGCATGGATATG</genome_strand>
        <mrna_strand>CTCAAATACAGGACGATTTTGGGGGAAAACCCCTTTTACATCGGGAAAGTAAATCACCGGCAACAATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTCCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAG...........................................................................................................................................GTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATCCTCACATGTGATTGGAGTAAGTATGACGATTGTATCATTGCAACTGCATCCGTTGATAAGTCAATCAAGGTTTGGGATGTTAGGAATTATAGAGTGCCAATATCAGTGCTTAATGGGCATGGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E710642" ref_strand="+" ref_description="SGN-E710642 [FA56AC04]">
      <seq>cccttttatagaggacgattttgggggaaaaccccttttacatccgtaaagtaaatcaccggcaacaatcaaatcagcgccgaccgctgtccgccgtccgccgaccgcctaagatgccggtatttaaaactccatttaacggttactccgtaaaattcagtcccttctacgaaaacaaactagctgtggccactgcgcagaatttcggcatccttggtaacgggagagttcacattcttcagctcaatccaaacggaccggtatcggaacttgcggcttttgacacagctgatggagtttacgacgtttgctggtcggaagctcacgattcacttgttattgctggaagtggcgatggttctgtgaaactctatgacctttctttgcctcccaccaataaccctattcgttcttttaaggaacatacacgggaagttcactctgttgactataataccgtgagaaaagattccttcttgtcagcgtcttgggatgatactgtgaagctatggactgttgatagaaatgccagtgtaaggacttttaaggaacatgcttattgtgtctattccgctgcttggaatccaagacatgctgatatctttgcatctgcttctggggattgtactactcgcatctgggatgtccgcgaaccaggttctacaatgattctgcctgcacacgagtttgaaatcctcacatgtgattggagtaagtatgacgattgtatcattgcaactgcatccgttgataagtccatcaaggcttgggatgttaggaattataaagtgcccatatcagtgccttaatgggcatggatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="77163" stop="75610"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76857" g_stop="76214" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="14" r_stop="657" r_length="644" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76213" i_stop="76075" i_length="139">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76074" g_stop="75910" g_length="165"/>
          <reference_exon_boundary r_type="cDNA" r_start="658" r_stop="823" r_length="166" r_score="0.964"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-E710642" ref_strand="+">
        <total_alignment_score>0.990</total_alignment_score>
        <cumulative_length_of_scored_exons>809</cumulative_length_of_scored_exons>
        <coverage percentage="0.983" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E710642" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76857" e_stop="76214"/>
          <exon e_start="76074" e_stop="75910"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGATTTTGGGGGAAAACCCCTTTTACATCGGGAAAGTAAATCACCGGCAACAATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAGGTTAGCTTTGGATACATGTATTTGGCTGATCATACCTAAGAAAAATGATTCATTTCAACTGGTTTGACTAAGTTTTGATTAGTTTTTTAGGAGATTAATGATTTATCATTTTAACACGTATAATTCATGATTTGTGAAGGTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATCCTCACATGTGATTGGAGTAAGTATGACGATTGTATCATTGCAACTGCATCCGTTGATAAGTCAATCAAGGTTTGGGATGTTAGGAATTATAGAGTGCCAATATCAGTG-CTTAATGGGCATGGATATG</genome_strand>
        <mrna_strand>GACGATTTTGGGGGAAAACCCCTTTTACATCCGTAAAGTAAATCACCGGCAACAATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAG...........................................................................................................................................GTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATCCTCACATGTGATTGGAGTAAGTATGACGATTGTATCATTGCAACTGCATCCGTTGATAAGTCCATCAAGGCTTGGGATGTTAGGAATTATAAAGTGCCCATATCAGTGCCTTAATGGGCATGGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E727059" ref_strand="+" ref_description="SGN-E727059 [LA13CD12]">
      <seq>ccgatgattttgggggaaaaccccttttacatcgggaaagtaaatcaccggcaacaatcaaatcagcgccgaccgctgtccgccgtccgccgaccgcctaagatgccggtatttaaaactccatttaacggttactccgtaaaattcagtcccttctacgaaaacaaactagctgtggccactgcgcagaatttcggcatccttggtaacgggagagttcacattcttcagctcaatccaaacggaccggtatcggaacttgcggcttttgacacagctgatggagtttacgacgtttgctggtcggaagctcacgattcacttgttattgctggaagtggcgatggttctgtgaaactctatgacctttctttgcctcccaccaataaccctattcgttcttttaaggaacatacacgggaagttcactctgttgactataataccgtgagaaaagattccttcttgtcagcgtcttgggatgatactgtgaagctatggactgttgatagaaatgccagtgtaaggacttttaaggaacatgcttattgtgtctattccgctgcttggaatccaagacatgctgatatctttgcatctgcttctggggattgtactactcgcatctgggatgtccgcgaaccaggttctacaatgattctgcctgcacacgagtttgaaatcctcacatgtgattggagtaagtatgacgattgtatcattgcaactgcatccgttgataagtcaatcaaggtttgggatgttagga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="77157" stop="75652"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76857" g_stop="76214" g_length="644"/>
          <reference_exon_boundary r_type="cDNA" r_start="3" r_stop="646" r_length="644" r_score="0.998"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76213" i_stop="76075" i_length="139">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76074" g_stop="75952" g_length="123"/>
          <reference_exon_boundary r_type="cDNA" r_start="647" r_stop="769" r_length="123" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-E727059" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>767</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E727059" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76857" e_stop="76214"/>
          <exon e_start="76074" e_stop="75952"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACGATTTTGGGGGAAAACCCCTTTTACATCGGGAAAGTAAATCACCGGCAACAATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAGGTTAGCTTTGGATACATGTATTTGGCTGATCATACCTAAGAAAAATGATTCATTTCAACTGGTTTGACTAAGTTTTGATTAGTTTTTTAGGAGATTAATGATTTATCATTTTAACACGTATAATTCATGATTTGTGAAGGTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATCCTCACATGTGATTGGAGTAAGTATGACGATTGTATCATTGCAACTGCATCCGTTGATAAGTCAATCAAGGTTTGGGATGTTAGGA</genome_strand>
        <mrna_strand>GATGATTTTGGGGGAAAACCCCTTTTACATCGGGAAAGTAAATCACCGGCAACAATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAG...........................................................................................................................................GTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATCCTCACATGTGATTGGAGTAAGTATGACGATTGTATCATTGCAACTGCATCCGTTGATAAGTCAATCAAGGTTTGGGATGTTAGGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E561448" ref_strand="+" ref_description="SGN-E561448 [17441]">
      <seq>ccgtccgtctaagatgccggtatccaaaactccatttaacggttacctctgtaaagtccagtcccttctacgaaaacaaactagctgtggccactgcgcagaatttcggcatccttggtaacgggagagttcacattcttcaactcaatccaaacggacccgtatcggaacttgcggcttttgacacagctgatggagtttacgatgtttgctggtcggaagctcacgattcccttgtaattgctgcaagtggcgatggttctgtgaaactctatgacctttctttgcctcccaccaataaccctattcgttcttttaaggaacatacacgggaagttcattctgttgactataataccgtgagaaaagattccttcttatcagcgtcttgggatgatactgtgaagctatggactgttgatagaaatgctagtgtaaggacttttaaggagcatgcttattgtgtctattccgctgcttggaatccaagacatgctgatatctttgcatctgcttctggggattgtactactcgcatctgggatgtccgcgaaccaggttctaccatgattctgcctgcgcatgagtttgaaatcctcacatgtgattggagtaagtatgatgattgtatcattgcaactgcgtccgttgataagtcaatcaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="77070" stop="75669"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76770" g_stop="76214" g_length="557"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="558" r_length="558" r_score="0.966"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76213" i_stop="76075" i_length="139">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76074" g_stop="75969" g_length="106"/>
          <reference_exon_boundary r_type="cDNA" r_start="559" r_stop="664" r_length="106" r_score="0.953"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-E561448" ref_strand="+">
        <total_alignment_score>0.964</total_alignment_score>
        <cumulative_length_of_scored_exons>663</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E561448" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76770" e_stop="76214"/>
          <exon e_start="76074" e_stop="75969"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTA-CTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAGGTTAGCTTTGGATACATGTATTTGGCTGATCATACCTAAGAAAAATGATTCATTTCAACTGGTTTGACTAAGTTTTGATTAGTTTTTTAGGAGATTAATGATTTATCATTTTAACACGTATAATTCATGATTTGTGAAGGTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATCCTCACATGTGATTGGAGTAAGTATGACGATTGTATCATTGCAACTGCATCCGTTGATAAGTCAATCAA</genome_strand>
        <mrna_strand>CCGTCCGTCTAAGATGCCGGTATCCAAAACTCCATTTAACGGTTACCTCTGTAAAGTCCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAACTCAATCCAAACGGACCCGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGATGTTTGCTGGTCGGAAGCTCACGATTCCCTTGTAATTGCTGCAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCATTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTATCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCTAGTGTAAGGACTTTTAAGGAGCATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAG...........................................................................................................................................GTTCTACCATGATTCTGCCTGCGCATGAGTTTGAAATCCTCACATGTGATTGGAGTAAGTATGATGATTGTATCATTGCAACTGCGTCCGTTGATAAGTCAATCAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E426025" ref_strand="+" ref_description="SGN-E426025 [STM-45-N16]">
      <seq>gctttccaaacagagccttagttatcacaaatcccttttactattgaagagcagaaaaggtcacatcgggaagtaaatcaccggcaacaaccaaatcaccggcgactgccgtccgtctaagatgccggtattcaaaactccatttaacggttactccgtaaagttcagtcccttctacgaaaacaaactagctgtggccactgcgcagaatttcggcatccttggtaacgggagagttcacattcttcaactcaatccaaacggacccgtatcggaacttgcggcttttgacacagctgatggagtttacgatgtttgctggtcggaagctcacgattcccttgtaattgctgcaagtggcgatggttctgtgaaactctatgacctttctttgcctgccaccaataaccctattcgttcttttaaggaacatacacgggaagttcattctgttgactataataccgtgagaaaagattccttcttatcagcgtcttgggatgatactgtgaagctatggactgttgatagaaatgctagtgtaaggacttttaaggagcatgcttattgtgtctattccgctgcttggaatccaagacatgctgatatctttgcatctgcttctggggattgtactactcgcatctgggatgtccgcgaaccaggttctaccatgattctgcctgcgcatgagtttgaatcctcacatgtgattggagtaagtatgatgattgtatcattgcaact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="77133" stop="75692"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76829" g_stop="76214" g_length="616"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="665" r_length="601" r_score="0.948"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76213" i_stop="76075" i_length="139">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.92"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76074" g_stop="75992" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="666" r_stop="747" r_length="82" r_score="0.940"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-E426025" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>699</cumulative_length_of_scored_exons>
        <coverage percentage="0.936" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E426025" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76829" e_stop="76214"/>
          <exon e_start="76074" e_stop="75992"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGGGAAAGTAAATCACCGGCAACAATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAGGTTAGCTTTGGATACATGTATTTGGCTGATCATACCTAAGAAAAATGATTCATTTCAACTGGTTTGACTAAGTTTTGATTAGTTTTTTAGGAGATTAATGATTTATCATTTTAACACGTATAATTCATGATTTGTGAAGGTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATCCTCACATGTGATTGGAGTAAGTATGACGATTGTATCATTGCAACT</genome_strand>
        <mrna_strand>ATCGGG-AAGTAAATCACCGGCAACAACCAAATCACCGGCGA---C--T--GCCGT-------CCGTCTAAGATGCCGGTATTCAAAACTCCATTTAACGGTTACTCCGTAAAGTTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAACTCAATCCAAACGGACCCGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGATGTTTGCTGGTCGGAAGCTCACGATTCCCTTGTAATTGCTGCAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTGCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCATTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTATCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCTAGTGTAAGGACTTTTAAGGAGCATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAG...........................................................................................................................................GTTCTACCATGATTCTGCCTGCGCATGAGTTTG-AATCCTCACATGTGATTGGAGTAAGTATGATGATTGTATCATTGCAACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E318008" ref_strand="+" ref_description="SGN-E318008 [cTOA-30-B22]">
      <seq>tcaaatacaggacgattttgggggaaaaccccttttacatcgggaaagtaaatcaccggcaacaatcaaatcagcgccgaccgctgtccgccgtccgccgaccgcctaagatgccggtatttaaaactccatttaacggttactccgtaaaattcagtcccttctacgaaaacaaactagctgtggccactgcgcagaatttcggcatccttggtaacgggagagttcacattcttcagctcaatccaaacggaccggtatcggaacttgcggcttttgacacagctgatggagtttacgacgtttgctggtcggaagctcacgattcacttgttattgctggaagtggcgatggttctgtgaaactctatgacctttctttgcctcccaccaataaccctattcgttcttttaaggaacatacacgggaagttcactctgttgactataataccgtgagaaaagattccttcttgtcagcgtcttgggatgatactgtgaagctatggactgttgatagaaatgccagtgtaaggacttttaaggaacatgcttattgtgtctattccgctgcttggaatccaagacatgctgatatctttgcatctgcttctggggattgtactactcgcatctgggatgtccgcgaaccaggttctacaatgattctgcctgcacacgagtttgaaatcctcacatggtgattggagtaagtatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="77167" stop="75711"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76867" g_stop="76214" g_length="654"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="654" r_length="654" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76213" i_stop="76075" i_length="139">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76074" g_stop="76011" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="655" r_stop="719" r_length="65" r_score="0.969"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-E318008" ref_strand="+">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>718</cumulative_length_of_scored_exons>
        <coverage percentage="0.999" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E318008" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76867" e_stop="76214"/>
          <exon e_start="76074" e_stop="76011"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATACAGGACGATTTTGGGGGAAAACCCCTTTTACATCGGGAAAGTAAATCACCGGCAACAATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAGGTTAGCTTTGGATACATGTATTTGGCTGATCATACCTAAGAAAAATGATTCATTTCAACTGGTTTGACTAAGTTTTGATTAGTTTTTTAGGAGATTAATGATTTATCATTTTAACACGTATAATTCATGATTTGTGAAGGTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATCCTCACAT-GTGATTGGAGTAAGTATGA</genome_strand>
        <mrna_strand>TCAAATACAGGACGATTTTGGGGGAAAACCCCTTTTACATCGGGAAAGTAAATCACCGGCAACAATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAG...........................................................................................................................................GTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATCCTCACATGGTGATTGGAGTAAGTATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E721571" ref_strand="+" ref_description="SGN-E721571 [FC14BD10]">
      <seq>cgccgtccgccgaccgcctaagatgccggtatttaaaactccatttaacggttactccgtaaaattcagtcccttctacgaaaacaaactagctgtggccactgcgcagaatttcggcatccttggtaacgggagagttcacattcttcagctcaatccaaacggaccggtatcggaacttgcggcttttgacacagctgatggagtttacgacgtttgctggtcggaagctcacgattcacttgttattgctggaagtggcgatggttctgtgaaactctatgacctttctttgcctcccaccaataaccctattcgttcttttaaggaacatacacgggaagttcactctgttgactataataccgtgagaaaagattccttcttgtcagcgtcttgggatgatactgtgaagctatggactgttgatagaaatgccagtgtaaggacttttaaggaacatgcttattgtgtctattccgctgcttggaatccaagacatgctgatatctttgcatctgcttctggggattgtactactcgcatctgggatgtccgcgaaccaggttctacaatgattctgcctgcacacgagtttgaaatc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="77079" stop="75737"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76779" g_stop="76214" g_length="566"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="566" r_length="566" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="76213" i_stop="76075" i_length="139">
            <donor d_prob="0.995" d_score="1.00"/>
            <acceptor a_prob="0.962" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="76074" g_stop="76037" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="567" r_stop="604" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-E721571" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>604</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E721571" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76779" e_stop="76214"/>
          <exon e_start="76074" e_stop="76037"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAGGTTAGCTTTGGATACATGTATTTGGCTGATCATACCTAAGAAAAATGATTCATTTCAACTGGTTTGACTAAGTTTTGATTAGTTTTTTAGGAGATTAATGATTTATCATTTTAACACGTATAATTCATGATTTGTGAAGGTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATC</genome_strand>
        <mrna_strand>CGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAG...........................................................................................................................................GTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E455882" ref_strand="+" ref_description="SGN-E455882 [cSTS-27-J18]">
      <seq>gctttccaaacagagccttagttatcacaaatcccttttactattgaagagcagaaaaggtcacatcgggaagtaaatcaccggcaacaaccaaatcaccggcgactgccgtccgtctaagatgccggtattcaaaactccatttaacggttactccgtaaagttcagtcccttctacgaaaacaaactagctgtggccactgcgcagaatttcggcatccttggtaacgggagagttcacattcttcaactcaatccaaacggacccgtatcggaacttgcggcttttgacacagctgatggagtttacgatgtttgctggtcggaagctcacgattcccttgtaattgctgcaagtggcgatggttctgtgaaactctatgacctttctttgcctgccaccaataaccctattcgttcttttaaggaacatacacgggaagttcattctgttgactataataccgtgagaaaagattccttcttatcagcgtcttgggatgatactgtgaagctatggactgttgatagaaatgctagtgtaaggacttttaaggagcatgcttattgtgtctattccgctgcttggaatccaagacatgctgatatctttgcatctgcttctggggattgtactactcgcatctgggat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="77133" stop="75927"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76829" g_stop="76227" g_length="603"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="652" r_length="588" r_score="0.947"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-E455882" ref_strand="+">
        <total_alignment_score>0.947</total_alignment_score>
        <cumulative_length_of_scored_exons>603</cumulative_length_of_scored_exons>
        <coverage percentage="0.925" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E455882" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76829" e_stop="76227"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATCGGGAAAGTAAATCACCGGCAACAATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGAT</genome_strand>
        <mrna_strand>ATCGGG-AAGTAAATCACCGGCAACAACCAAATCACCGGCGA---C--T--GCCGT-------CCGTCTAAGATGCCGGTATTCAAAACTCCATTTAACGGTTACTCCGTAAAGTTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAACTCAATCCAAACGGACCCGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGATGTTTGCTGGTCGGAAGCTCACGATTCCCTTGTAATTGCTGCAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTGCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCATTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTATCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCTAGTGTAAGGACTTTTAAGGAGCATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E260138" ref_strand="+" ref_description="SGN-E260138 [cLEG-52-C18]">
      <seq>taaatcaccggcaacaatcaaatcagcgccgaccgctgtccgccgtccgccgaccgcctaagatgccggtatttaaaactccatttaacggttactccgtaaaattcagtcccttctacgaaaacaaactagctgtggccactgcgcagaatttcggcatccttggtaacgggagagttcacattcttcagctcaatccaaacggaccggtatcggaacttgcggcttttgacacagctgatggagtttacgacgtttgctggtcggaagctcacgattcacttgttattgctggaagtggcgatggttctgtgaaactctatgacctttctttgcctcccaccaataaccctattcgttcttttaaggaacatacacgggaagttcactctgttgactataataccgtgagaaaagattccttcttgtcagcgtcttgggatgatactgtgaagctatggactgttgatagaaatgccagtgtaaggacttttaaggaacatgcttattgtgtctattccgctgcttggaatccaagacatgctgatatctttgcatctgcttctggggattgtactactcgcatctggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="77119" stop="75929"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76819" g_stop="76229" g_length="591"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="591" r_length="591" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-E260138" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>591</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260138" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76819" e_stop="76229"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAAATCACCGGCAACAATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGG</genome_strand>
        <mrna_strand>TAAATCACCGGCAACAATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E276718" ref_strand="+" ref_description="SGN-E276718 [cLEN-14-L17]">
      <seq>aaagtaaatcaccggcaacaatcaaatcagcgccgaccgctgtccgccgtccgccgaccgcctaagatgccggtatttaaaactccatttaacggttactccgtaaaattcagtcccttctacgaaaacaaactagctgtggccactgcgcagaatttctgcatccttggtaacgggagagttcacattcttcagctcaatccaaacggaccggtattggaacttgcggcttttgacacagctgatggagtttacgacgtttgctggtcggaagctcacgattcacttgttattgctggaagtggcgatggttctgtgaaactctatgacctttctttgcctcccaccaataaccctattcgttcttttaaggaacatacacgggaagttcactctgttgactataataccgtgagaaaagattacttcttgtcagcgtcttgggatgatactgtgaagctatggactgttgatagaaatgccagtgtagggactcttaaggaacatgcttattgtgtctattccgctgcttggaatccaagacatgctgatatctttgcatctgcttctggggattgtactactcgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="77123" stop="75935"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76823" g_stop="76235" g_length="589"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="589" r_length="589" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-E276718" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>589</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E276718" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76823" e_stop="76235"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTAAATCACCGGCAACAATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCA</genome_strand>
        <mrna_strand>AAAGTAAATCACCGGCAACAATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCTGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATTGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTACTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAGGGACTCTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E274825" ref_strand="+" ref_description="SGN-E274825 [cLEN-13-L17]">
      <seq>aaagtaaatcaccggcaacaatcaaatcagcgccgaccgctgtccgccgtccgccgaccgcctaagatgccggtatttaaaactccatttaacggttactccgtaaaattcagtcccttctacgaaaacaaactagctgtggccactgcgcagaatttcggcatccttggtaacgggagagttcacattcttcagctcaatccaaacggaccggtatcggaacttgcggcttttgacacagctgatggagtttacgacgtttgctggtcggaagctcacgattcacttgttattgctggaagtggcgatggttctgtgaaactctatgacctttctttgcctcccaccaataaccctattcgttcttttaaggaacatacacgggaagttcactctgttgactataataccgtgagaaaagattccttcttgtcagcgtcttgggatgatactgtgaagctatggactgttgatagaaatgccagtgtaaggacttttaaggaacatgcttattgtgtctattccgctgcttggaatccaagacatgctgatatctttgcatct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="77123" stop="75960"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76823" g_stop="76260" g_length="564"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="564" r_length="564" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-E274825" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>564</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E274825" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76823" e_stop="76260"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTAAATCACCGGCAACAATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCT</genome_strand>
        <mrna_strand>AAAGTAAATCACCGGCAACAATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E307617" ref_strand="+" ref_description="SGN-E307617 [cLEY-16-O20]">
      <seq>tcaaatcagcgccgaccgctgtccgccgtccgccgaccgcctaagatgccggtatttaaaactccatttaacggttactccgtaaaattcagtcccttctacgaaaacaaactagctgtggccactgcgcagaatttcggcatccttggtaacgggagagttcacattcttcagctcaatccaaacggaccggtatcggaacttgcggcttttgacacagctgatggagtttacgacgtttgctggtcggaagctcacgattcacttgttattgctggaagtggcgatggttctgtgaaactctatgacctttctttgcctcccaccaataaccctattcgttcttttaaggaacatacacgggaagttcactctgttgactataataccgtgagaaaagattccttcttgtcagcgtcttgggatgatactgtgaagctatggactgttgatagaaatgccagtgtaaggacttttaaggaacatgcttattgtgtctattccgctgcttggaatccaagacatgctgatatctttgcat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="77102" stop="75962"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76802" g_stop="76262" g_length="541"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="541" r_length="541" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-E307617" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>541</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E307617" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76802" e_stop="76262"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCAT</genome_strand>
        <mrna_strand>TCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E247977" ref_strand="+" ref_description="SGN-E247977 [cLEF-47-C13]">
      <seq>cgccgaccgtctaagatgccggtatttaaaactcgatttggcggttactccgtaaaattcagtcccttctacgaaaacaaactagctgtggccactgcgcagaatttcggcatccttggtaacgggagagttcacattcttcagctcaatccaaacggaccggtatcggaacttgcggcttttgacacagctgatggagtttacgacgtttgctggtcggaagctcacgattcacttgttattgctggaagtggcgatggttctgtgaaactctatgacctttctttgcctcccaccaataaccctattcgttcttttaaggaacatacacgggaagttcactctgttgactataataccgtgagaaaagattccttcttgtcagcgtcttgggatgatactgtgaagctatggactgttgatagaaatgccagtgtaaggacttttaaggaacatgcttattgtgtctattccgctgcttggaatccaagacatgctgatatctttgca</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="77072" stop="75963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76772" g_stop="76263" g_length="510"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="510" r_length="510" r_score="0.992"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-E247977" ref_strand="+">
        <total_alignment_score>0.992</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E247977" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76772" e_stop="76263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCA</genome_strand>
        <mrna_strand>CGCCGACCGTCTAAGATGCCGGTATTTAAAACTCGATTTGGCGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E309824" ref_strand="+" ref_description="SGN-E309824 [cLEZ-10-O23]">
      <seq>cttttacatcgggaaagtaaatcaccggcaacaatcaaatcagcgccgaccgctgtccgccgtccgccgaccgcctaagatgccggtatttaaaactccatttaacggttactccgtaaaattcagtcccttctacgaaaacaaactagctgtggccactgcgcagaatttcggcatccttggtaacgggagagttcacattcttcagctcaatccaaacggaccggtatcggaacttgcggcttttgacacagctgatggagtttacgacgtttgctggtcggaagctcacgattcacttgttattgctggaagtggcgatggttctgtgaaactctatgacctttctttgcctcccaccaataaccctattcgttcttttaaggaacatacacgggaagttcactctgttgactataataccgtgagaaaagattccttcttgtcagcgtcttgggatgatactgtgaagctatggact</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="77136" stop="76056"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76836" g_stop="76356" g_length="481"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="481" r_length="481" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-E309824" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>481</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E309824" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76836" e_stop="76356"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTTTACATCGGGAAAGTAAATCACCGGCAACAATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACT</genome_strand>
        <mrna_strand>CTTTTACATCGGGAAAGTAAATCACCGGCAACAATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E254671" ref_strand="+" ref_description="SGN-E254671 [cLEG-29-O16]">
      <seq>acgattttgggggataaccccttttacatcgggaaagtaaatcaggggcaacaatgcaaatcagcgccgaccgctgtccgccgtccgccgaccgcctaagatgccggtatttaaaactccatttaacggttactccgtaaaattcagtcccttctacgaaaacaaactagctgtggccactgcgcagaatttcggcatccttggtaacgggagagttcacattcttcagctcaatccaaacggaccggtatcggaacttgcggcttttgacacagctgatggagtttacgacgtttgctggtcggaagctcacgattcacttgttattgctggaagtggcgatggttctgtgaaactctatgacctttctttgcctcccaccaataaccctattcgttcttttaaggaacatacacgggaaggtcactctgttgactataataccgggagaaaagatcccttcttgtcagcgtcttgggatgatactgtgaagc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="77156" stop="76064"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76856" g_stop="76364" g_length="493"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="494" r_length="494" r_score="0.984"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-E254671" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>493</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254671" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76856" e_stop="76364"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACGATTTTGGGGGAAAACCCCTTTTACATCGGGAAAGTAAATCACCGGCAACAAT-CAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGC</genome_strand>
        <mrna_strand>ACGATTTTGGGGGATAACCCCTTTTACATCGGGAAAGTAAATCAGGGGCAACAATGCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGGTCACTCTGTTGACTATAATACCGGGAGAAAAGATCCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E337608" ref_strand="+" ref_description="SGN-E337608 [cTOE-11-L5]">
      <seq>gtaaatcaccggcaacaatcaaatcagcgccgaccgctgtccgccgtccgccgaccgcctaagatgccggtatttaaaactccatttaacggttactccgtaaaattcagtcccttctacgaaaacaaactagctgtggccactgcgcagaatttcggcatccttggtaacgggagagttcacattcttcagctcaatccaaacggaccggtatcggaacttgcggcttttgacacagctgatggagtttacgacgtttgctggtcggaagctcacgattcacttgttattgctggaagtggcgatggttctgtgaaactctatgacctttctttgcctcccaccaataaccctattcgttcttttaaggaacatacacgggaagttcactctgttgac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="77120" stop="76122"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="76820" g_stop="76422" g_length="399"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="399" r_length="399" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-E337608" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>399</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E337608" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="76820" e_stop="76422"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTAAATCACCGGCAACAATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGAC</genome_strand>
        <mrna_strand>GTAAATCACCGGCAACAATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E283948" ref_strand="+" ref_description="SGN-E283948 [cLER-13-J1]">
      <seq>aaaaaccattttgagaacaaagtgaggtattccataaactatacaagaaaaataatctatgaagaaaaatagagtgtgagcgatattttagtaaggtggaaaccaaaagagtgttgttccttttgagtgtgtattagttactttgagtattgtattcgtgactacacagtttaaaactctttactatattaatatcagttgctcctct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="+" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="80527" stop="81336"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80827" g_stop="81036" g_length="210"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="208" r_length="208" r_score="0.929"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="+" ref_id="SGN-E283948" ref_strand="+">
        <total_alignment_score>0.929</total_alignment_score>
        <cumulative_length_of_scored_exons>210</cumulative_length_of_scored_exons>
        <coverage percentage="1.010" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E283948" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80827" e_stop="81036"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAAACCATTTTGAGAGCAAAGTGAGGTATTCCATAGACTGTACAAGAAAAATAGTCTTTGAAGAAAAATAGAGTGTCGGGGCGATATTTTAGTAAGGTGGAAACCAAAATAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTATTGTATTCGTGACTACACAGTGTAAAACTCCTTACTATAGTGATATCAGTTGCTCCTCT</genome_strand>
        <mrna_strand>AAAAACCATTTTGAGAACAAAGTGAGGTATTCCATAAACTATACAAGAAAAATAATCTATGAAGAAAAATAGAGTGT--GAGCGATATTTTAGTAAGGTGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTATTAGTTACTTTGAGTATTGTATTCGTGACTACACAGTTTAAAACTCTTTACTATATTAATATCAGTTGCTCCTCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392272" ref_strand="+" ref_description="SGN-E392272 [TUS-35-A16](-)">
      <seq>atgtgatcttccatcctacatggttccttttgtccctgatgacttgatatttgagaaaccagaggatggtggggagaaatctccccccccctcaacagctattagtgcttatgcggaaggattttccgcagataacataattagaagagctttgtatttgtggaagaaacgtgagaaacaaactgtagataccattcaccaaaaagttgtatcagctgataagagactcgagtcttgaaaactgatgatgaagtaaagagttcccgattctgtctatagctttttttggctgtacttgtattatagcgagatattaaagagtagtttagcagtgtaattgcttcttttttttttggaaatctatgggaaacacacaacctctaccgttcaggtgagcattctgtagtacgcactttgtggtaaaatgctcactaggcaagctccatgtaacaagctcatctctttttcaaactctctatctaactcctaaaatatgaaggttgtagatggattacatgtaaatgattccttcgtttgtcaactaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="90366" stop="88208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="90066" g_stop="90003" g_length="64"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="90002" i_stop="88993" i_length="1010">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="0.86"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="88992" g_stop="88501" g_length="492"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="556" r_length="492" r_score="0.957"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-E392272" ref_strand="+">
        <total_alignment_score>0.962</total_alignment_score>
        <cumulative_length_of_scored_exons>556</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392272" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="90066" e_stop="90003"/>
          <exon e_start="88992" e_stop="88501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATGTGATCTTCCATCCTACATGGTTCCTTTTGTCCCTGATGACTTGATATTTGAGAAACCAGAGGTGAATCATCTTAGTATTTATATTTTCCGTTCCACATCTATAATTTTAAATGCTGTCTATTTTTGGGTGCAACTCTGCAATTCACTTAGAATCAATGTCCTATAAGTATCTCCATGTTTGTTGATGTTTAGAAGCTATTAAAGTGTTGACTAGAGGCCAGCATCCAACCATCCAAGTTTGCATTGCTTAGTGGTGGGTGTCAAATAGTAAAGTGGCTTTCCTTATACTTAGAGTGAGGAAACAGGTTGGAGTTAAGACTTCTAAATTTCTCGCACCATATTTCTAATATATCTGTAGTTATTAATTGGAAGGTATGTTGGCCTTTTAGCCCAAATTTGGTGGGAACTTTTTCAGCCTATAGATGCTCGGAAGGATAAAAAATTGACTTATAATATGACTTCACATTGCTCAATGATACATGTTCCACATCCAATGGAAAATTTATTGGCCAAATCATGGGGCTCATGAACCCATGGTCTTTCCGTAAAACTAGGTATTTTATGTATATATGTTTTCTAAAATTAATATAATTTTATCTGCTAGCACCCGATGATACAAGGTCAAATGGTGCACTTGTTAAATTTTGAGTTGTTCACCTAGAGGATTAGGATCAATTCCCATTGTATACATTATTTTCTTCTTTTTTTAGTGGTGCACCTGTGTTCTAGAAATCCTAGATTCGCCTGTCCACATCAATGAATTTCAAGGTCCACATTGGCAGCAGCTTGAGCAAGTCCATACATTGAAAAGCACCTTGTCTTCCTTAGTGTATGTTGTGGGAGTTTTGATTAGACTGATGCCTGAACCTTGTGAGGGCTACTTCTATTTTCCGAGATTGGCTATATGTCCATTGATAGCTTTTCCTATGAGTGAGTATATTATATTGAAGCTTGAATTTATACAGTTGGCAACAAGCATTAGAAAATCAGTCCAGGAACTTGTAAAAAAATAAAACTGGTGCTGATGCTTAGATGTTTGCTACAATCTGAAAGCTGAGATTTTTTATGCAGGATGGTGGGGAGAAATTTACTAGCCTCTTAACAGCTATTAGTGCTTATGCGGAAGGATTTTCCGCAGATAACATAATTAGAAGAGCTTTGTATTTGTGGAAGAAACTTGAGAAACAAACTGTAGATACCATTCACCAAAAAGTTGTATCAGCTGATAAGAGACTCGAGTCTTGAAAACTGATGATGATGTAAAGAGTTCCCGATTCTGTCTATAGCTTTTTTTGGCTGTACTTGTATTATAGTGAGATATTAAAGAGTAGTTTAGCAGTGTAATTGCTTCTTTTTTTTTTGGAAATCTCTGGGAAACACACAACCTCTACCGTTCAGGTGAGCATTCTGTAGTATGCACTTTGTGGTAAAATGCTCACTAGGCAAGCTCCATGTAACAAGCTCATCTCTTCTTCAAACTCTCTATGTAACTCCTAAAATATGAAGGTTGTAGATGGATTACATGTAAATGATTCCTTCGTTTGTCAACTAGAATAGCTGCAA</genome_strand>
        <mrna_strand>ATGTGATCTTCCATCCTACATGGTTCCTTTTGTCCCTGATGACTTGATATTTGAGAAACCAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGTGGGGAGAAATCTCCCCCCCCCTCAACAGCTATTAGTGCTTATGCGGAAGGATTTTCCGCAGATAACATAATTAGAAGAGCTTTGTATTTGTGGAAGAAACGTGAGAAACAAACTGTAGATACCATTCACCAAAAAGTTGTATCAGCTGATAAGAGACTCGAGTCTTGAAAACTGATGATGAAGTAAAGAGTTCCCGATTCTGTCTATAGCTTTTTTTGGCTGTACTTGTATTATAGCGAGATATTAAAGAGTAGTTTAGCAGTGTAATTGCTTCTTTTTTTTTTGGAAATCTATGGGAAACACACAACCTCTACCGTTCAGGTGAGCATTCTGTAGTACGCACTTTGTGGTAAAATGCTCACTAGGCAAGCTCCATGTAACAAGCTCATCTCTTTTTCAAACTCTCTATCTAACTCCTAAAATATGAAGGTTGTAGATGGATTACATGTAAATGATTCCTTCGTTTGTCAACTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E392529" ref_strand="+" ref_description="SGN-E392529 [TUS-35-C16](-)">
      <seq>agaaacaaactgtagataccattcacaaaaaagttgtatcagctgataagagactcgagtcttgaaaactgatgatgatgtaaagagttcccgattctgtctatagctttttttggctgtacttgtattatagtgagatattaaagagtagtttagcagtgtaattgcttcttttttttttggaaatctctgggaaacacacaacctctaccgttcaggtgagcattctgtagtatgcactttgtggtaaaatgctcactaggcaagctccatgtaacaagctcatctcttcttcaaactctctatgtaactcctaaaatatgaaggttgtagatggattacatgtaaatgattccttcgtttgtcaactaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="89183" stop="88208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="88883" g_stop="88501" g_length="383"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="383" r_length="383" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-E392529" ref_strand="+">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>383</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E392529" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="88883" e_stop="88501"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAAACAAACTGTAGATACCATTCACCAAAAAGTTGTATCAGCTGATAAGAGACTCGAGTCTTGAAAACTGATGATGATGTAAAGAGTTCCCGATTCTGTCTATAGCTTTTTTTGGCTGTACTTGTATTATAGTGAGATATTAAAGAGTAGTTTAGCAGTGTAATTGCTTCTTTTTTTTTTGGAAATCTCTGGGAAACACACAACCTCTACCGTTCAGGTGAGCATTCTGTAGTATGCACTTTGTGGTAAAATGCTCACTAGGCAAGCTCCATGTAACAAGCTCATCTCTTCTTCAAACTCTCTATGTAACTCCTAAAATATGAAGGTTGTAGATGGATTACATGTAAATGATTCCTTCGTTTGTCAACTAGAATAGCTGCAA</genome_strand>
        <mrna_strand>AGAAACAAACTGTAGATACCATTCACAAAAAAGTTGTATCAGCTGATAAGAGACTCGAGTCTTGAAAACTGATGATGATGTAAAGAGTTCCCGATTCTGTCTATAGCTTTTTTTGGCTGTACTTGTATTATAGTGAGATATTAAAGAGTAGTTTAGCAGTGTAATTGCTTCTTTTTTTTTTGGAAATCTCTGGGAAACACACAACCTCTACCGTTCAGGTGAGCATTCTGTAGTATGCACTTTGTGGTAAAATGCTCACTAGGCAAGCTCCATGTAACAAGCTCATCTCTTCTTCAAACTCTCTATGTAACTCCTAAAATATGAAGGTTGTAGATGGATTACATGTAAATGATTCCTTCGTTTGTCAACTAAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E370134" ref_strand="+" ref_description="SGN-E370134 [TUS-26-P6](-)">
      <seq>aaattttgttagaatgtgttgaacaagttgaggaggagcaaattaggaaggcattgctgtccgatgcagagctggctagacttagcaaggatctagcaatactacgatgtgatcttccatcctacatggttccttttgtccctgatgacttgatatttgagaaaccagaggatggtggggagaaatttactagcctcttaacagctattagtgcttatgcggaaggattttccgcagataacataattagaagagctttgtatttgtggaagaaacttgagaaacaaactgtagataccattcaccaaaaagttgtatcagctgataagagactcgagtcttgaaaactgatgatgatgtaaagagttcccgattctgtctatagctttttttggctgtacttgtattatagtgagatattaaagagtagtttagcagtgtaattgcttcttttttttttggaaatctctgggaaacacacaacctctaccgttcaggtgagcattctgtagtatgcactttgtggtaaaatgctcactaggcaagctccatgtaacaagctcatctcttcttcaaactctctatgtaactcctaaaatatgaaggttgtagatggattacatgtaaatgattccttcgtttgtcaactaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="95263" stop="88208"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="94963" g_stop="94914" g_length="50"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="50" r_length="50" r_score="0.960"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="94913" i_stop="90207" i_length="4707">
            <donor d_prob="0.988" d_score="0.96"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="90206" g_stop="90162" g_length="45"/>
          <reference_exon_boundary r_type="cDNA" r_start="51" r_stop="95" r_length="45" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="90161" i_stop="90078" i_length="84">
            <donor d_prob="0.987" d_score="1.00"/>
            <acceptor a_prob="0.975" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="90077" g_stop="90003" g_length="75"/>
          <reference_exon_boundary r_type="cDNA" r_start="96" r_stop="170" r_length="75" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="90002" i_stop="88993" i_length="1010">
            <donor d_prob="0.996" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="88992" g_stop="88502" g_length="491"/>
          <reference_exon_boundary r_type="cDNA" r_start="171" r_stop="661" r_length="491" r_score="0.986"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-E370134" ref_strand="+">
        <total_alignment_score>0.985</total_alignment_score>
        <cumulative_length_of_scored_exons>661</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E370134" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="94963" e_stop="94914"/>
          <exon e_start="90206" e_stop="90162"/>
          <exon e_start="90077" e_stop="90003"/>
          <exon e_start="88992" e_stop="88502"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAATTTGTTAGAATGTGTTGAACAAGTTGAGGAGGAGCGAATTAGGAAGGTAACTCCTGCTAATTTATGATTGTGGTTTATTTAACTTCTCTTGGTAGTGACTTGTTACATGAGATTCACCATTTCCAATTATTCTTTCTTTAATTTTTTCCATTCAAATTGCCTCCTCCAGAGGAAGCCTATGTAAGTTTGTCATCTCTGGGTATCATTTAGACACGGTAGCTGATTAGATTTAATAGTAATCTATAAACAAAGCAATATATCAGTCTTCAATCCACATCTGCTGATCCAGTATTACTGGTCACGTGAACAGGATCCAAATTACTCTGGCTGTGAATTGTTTACACTTTAACTGTTTTGTCCATGTTATTCCTGTTAAATTAGGTCTTAGGCCTAACTCATATCCCAAAAGCTAGCTCAAAGGGAGAAGGATTGCCAACCCTTATAAGGAGTCCACCCATCTCATTAACCACCAATGTGAGATTTTTGTTTTTAGCACCCCACCTCACGCCTAGTGCTTAGCATCTCGTGCGTGGAAAACTCACATCCCAAAAGCTAGCTCAAAGGGAGGAGGATTGTCAACCTTTATAAGGAGTCCACCCATCTCATTAACCACCAATGTGAGATTTTTTTCTTTTAAGACTCCACCTCACGCCTAGTGCTTAACATCTCGTGCGTGGGCAATTTGACCCACCTCATGCCCAGTGCTTAGCATTTGGTGCGCGGGTAGTTTTTGGGCAATTTTTGATTTTTTTTGCGGCCCCAACATCGGGTAAGATGGGCCCTACTATGATACCATGTAAGGATATGGTACCTTGGTCTAACTCAACCCCTAAAGCTAGCTCATGAGGGGAGGTTTGTCCAAGTCCATATAAGGAGACCAAATTTCCATCCTTCTACCAATGTGGGACTTCTTAACACTCCCCCGCACGCCCAGACCTCAAATGGAGCGTGAACACTTCTAAATGGGGGCCCAAAATCGGTGAACAACGAATTGGGATGGGCATGACTTTGATACCATGTTAAATTAGGTGTTAGGTCTAACTCACACCTCAAAAGCTAGCTCAAAAGGGAGGAGGATTGTCCAAGCCTTATAAGGAGTCCAGCCATCTCATTAATAACCAATGTGGTACTTTTTGCTTTTAACAATTCCCTTAGCTTAAATTATAATACGATTTCCCAATTGTTTTAGACCATGTCTGTTCAATGGACTACCATTGGAATTCACTCTGCTAAAAAAAGAGAAATATGTACAGAAGAGAAGAAGAAAACTAGTTTATCATTTGTGATTTCTGACAATTAAGATATGTTATCTGCCAAATACCATCTTTTAGAAATTGGAGTTTCCTTGCTTTGTACATGATCACAGCATGTGTGTGTCTGTGTTGGCTTTGTACTTTGCAAGAAGCTGGATTTTGGGACTAATTCAACCCCAAAAATTAGCTGAAGAGGGGAATATTGAGCAAATCATTTAAAGAGACCACCTATCCTGTAAATCCTTGATGTGGGAACTCTTCGATCCCCCCCTCCCGTCCAGGGTTGAACATTTGAAGCATCGACAATTTTTATAATATGGTGGCCCAACATCGGGTGATAAGATTTGGAAGAAGTTCTGCTTTGATATGTAAAGAAATGGATTTTATGGATCAAACCTGAAGTAGGCCGTAGTGAGTATCAATCTTATGGATGAAAGCTATACTTGAAAATGGTAAGAATATGGTAGCTATATGTTTGTCTGTCTTCCCCTTCTAAAACAATTGTACTGTTCTACCTCTTTCTGTCTCATCACTTATGCCAGCTTGCCAACCTGTTTCCAATTTTTCCACTATTCCTTGCCATACTCCCTGCTGACCTATGTTCGTCACCGAGAGAGGCCCAACTTCAAGTATGTAGTTGGAAAACCAGCAGTTCTGCATCCTAGGATCTCAGCCAGCTCCAAAATATTGGCAACATTATTAACTGTTGCATCTCTATCTGCCAAATGCCATCTTTTTGGAATTTGAGTCACTTCCCTTTGTATATGGAATCACAGCATGTGCATGTCAGGGTTAGCTTTGTATTTCACAGTTCACCAAATTATAGGATGTGCATACCCTGAAGCAGGCTATAGCGAGTAGAAACAGTCAATCTTTTGGATTAGACCCGTTTTTGAAAGTGGTAATAATGTAGTATTCATATGTTTGGTCTCTCCCCCCCTCCAAAACAATTCTACTGTTGCATCTCTATTGCAGCAATTTTCAATTGATCTTTGAATGGAGCATCTGAAGTATGCAATCGTCTTACATCTGAACTCTTTCGGTTGAGTCTTAGAAATGGTTTGGCATTCCTTTTGTAGGACCTGACAGATTAAAATATAAACCTAATTAAAATGAGACTCTATTCTTTTTAGTTAATCTAATACTTGTATTCTCCTTCTTAGTTTTGTTAGAGAGTTGTATGTAAACCAAATTTTAGAGAACTCCTAGATTGCCTTACAACAACAACACACCTAGTGAAATCCTACTAAGTGGGGTCTGAGGAGGGTTAGGGTATACACAGACTTTTCCACTACCTCGTGGAGGTAGAGAGATTGTTTCAAAAGACCCTCGGCTCAAGCGCATCAAACTAAAATAAAAGAAGAAAACAATGAAGAAATCATAGCATTTAATAAGAAAAGCAGTGTAAAGTCTACAAAGAATAGTTTTCTTTTTTCTTCTTTTCTTTTCTTTATCTTTTGTTTATGCCAGACACACGAGACACACAAGTGTGGAGGGAGGATATGATGTAAATTGTTGGATAACAAATTTGAGCTGATGATTGATATGCAAATGTTACCTTTATAACAAAAAGAAAGTGTACAAGAAAGAACAATAACAACTACAAAATAGTGTGGTAATTAAACCACAATAACATATGGCCAGAACTACAAGGGTACGACTAGTACTATTAAAGGAACTAACAAGCCTAAACATTCCCAAGGCAATACAACAACTGCTAAATTGCCTTAGTGTCCAATTATTCAATATTGGAATAATAAGCCTGAATAGAACTAATTGTTTGCTTGAGGTTTGTTTGAGAACGGAAGATGCTAGGATATCACCAAATCAGTAGATATTGACTTGCTGGTTTCAGAGACGTGCTGATTTTATTTTCCATACCATTTATTCAAATCTAGAAACTTAGGAAAGTTAATTGTAGGGTTATCTGTGATTCTGTAGCAGTTTTTCCTGCTAGTATTTTGATCTTGATCTTCATTCTTCTATTATAAGAAAATGTGTACAACATTCTTTAACAAGAAGTGATTAAAGAGTTCTCCTCAAAAATATTCTCTTTCTCATGGTATGAAAGCTTAGTTGCTCTTTTCTGTCCTTTTTTTATAGAGGCTGGCATCTTGTCGTGAAGTTCCATCTGACTCTTCATGTGCAATCTAAAAACCAGTGTCCACACTCTGTGCAGATTATGACCACTCCATTCATGAAGTAAACTTCCTACGAATCTTGACAATTTTATAAACACTAAGCAACTCTCGCCGAAAAAGTTCTCAAACAAGGCACACCGGCCTTCTGCTTTCTTGTTAACTGTCTCGTATTGGTTAAGGGACACAGATGACCTTGGACAACATCATCTTATGAGCTAGATTTTTGGGGTAGATTCAAGCTCAAGGTCCCTTTTTTTAACATAATATCACAGCTAGACCAATTTCATTTTTTTTTTACCCAATCTTGGTCCCCCATATCAAGTTATCAATGCTCCAATGTCCATCTTTTTTGTTAAGTGCCTTTCCTAAACTAGAAACATCAAAAAGGAAACTTGCTGATGACTTTGATATCAAGGACTTGGGGGTGTTCAAATATATCCTTGTGCTGGAGTTTGCTACGTCTAAGGAAGGTAAATTTGTCAGTCAATGCCCATATGTGCATGACTTGCTCACTGAAACAAGCTTACTTGGTCGCAAATCTGTTGAAACATCGGTTGATCTTGAAGTTACAGTCCGTCAATATATAAGATGTGGTGGGTGCGATACTTAAAGCTTGTTGAAAATAGCAAATTTGCTCCATACCTGTCCAAAAATAACTTCTGCAGTAATCTAGGTGAGTCAATTCATGCATTCACTAAAAAAGTAACTCTTTGATGGTGAGTGCAAACTGTGAGATACTTGTAAGTTGCTAGGGAGTCATGGAAAAGGCTAGTTATTTAAGATATGGACATCTACGAACGGAAGTCTATGCTAATGTAGATTCGGGATAGCTAATGTAAGATCCAGTTCTGGTTGTTGTAACCTTTGTCAGAGAAAATCTCGTGAAATTGTAAGTACTATACAAAATATGGTGGCCAGGAACCAAGAGGTTGTGCAATAATTGAATTTAGACTAGTTGCTCATGTTCGTGAAATGTGAAGTAAACAATTCGTAGAAGTTTTGAATATTTTCAGTATTCTCCCCTGCAAGTATATTGCAATAATAAAACAACAATCTATATTGCGTATAATCTGGTTATTCATGACGGAACAATGCATGCGGAAGTGAATAGGCACTTCAGTCAATAAAGACTTGATAATGGGCTGTCTTGTATGCCATACATACCAACTGCCTGTCAAATTACTAATTTACTTGCAAAGGACTACAAAAGAAGCAAATTGACAGTTTGATAAGCATGCAGGAACTACTCATATTCCTCCTGTCTGTATGTGATCCCTTCCACATTCATGATTCTTCTACTTTGAAGAGAAGATGAGTAATAAGTTAATCTCTTAATTTGATTGGTTAATCTGCTTTCAGGCATTGCTGTCCGATGCAGAGCTGGCTAGACTTAGCAAGGATCTAGTATGTAGTTTTTTCCCTATGATATGTTGTTCTGACCTCATAATTCATCCCACTGCGCACTGAATAAATCTGTCAATTTTGCAGGCAATACTACGATGTGATCTTCCATCCTACATGGTTCCTTTTGTCCCTGATGACTTGATATTTGAGAAACCAGAGGTGAATCATCTTAGTATTTATATTTTCCGTTCCACATCTATAATTTTAAATGCTGTCTATTTTTGGGTGCAACTCTGCAATTCACTTAGAATCAATGTCCTATAAGTATCTCCATGTTTGTTGATGTTTAGAAGCTATTAAAGTGTTGACTAGAGGCCAGCATCCAACCATCCAAGTTTGCATTGCTTAGTGGTGGGTGTCAAATAGTAAAGTGGCTTTCCTTATACTTAGAGTGAGGAAACAGGTTGGAGTTAAGACTTCTAAATTTCTCGCACCATATTTCTAATATATCTGTAGTTATTAATTGGAAGGTATGTTGGCCTTTTAGCCCAAATTTGGTGGGAACTTTTTCAGCCTATAGATGCTCGGAAGGATAAAAAATTGACTTATAATATGACTTCACATTGCTCAATGATACATGTTCCACATCCAATGGAAAATTTATTGGCCAAATCATGGGGCTCATGAACCCATGGTCTTTCCGTAAAACTAGGTATTTTATGTATATATGTTTTCTAAAATTAATATAATTTTATCTGCTAGCACCCGATGATACAAGGTCAAATGGTGCACTTGTTAAATTTTGAGTTGTTCACCTAGAGGATTAGGATCAATTCCCATTGTATACATTATTTTCTTCTTTTTTTAGTGGTGCACCTGTGTTCTAGAAATCCTAGATTCGCCTGTCCACATCAATGAATTTCAAGGTCCACATTGGCAGCAGCTTGAGCAAGTCCATACATTGAAAAGCACCTTGTCTTCCTTAGTGTATGTTGTGGGAGTTTTGATTAGACTGATGCCTGAACCTTGTGAGGGCTACTTCTATTTTCCGAGATTGGCTATATGTCCATTGATAGCTTTTCCTATGAGTGAGTATATTATATTGAAGCTTGAATTTATACAGTTGGCAACAAGCATTAGAAAATCAGTCCAGGAACTTGTAAAAAAATAAAACTGGTGCTGATGCTTAGATGTTTGCTACAATCTGAAAGCTGAGATTTTTTATGCAGGATGGTGGGGAGAAATTTACTAGCCTCTTAACAGCTATTAGTGCTTATGCGGAAGGATTTTCCGCAGATAACATAATTAGAAGAGCTTTGTATTTGTGGAAGAAACTTGAGAAACAAACTGTAGATACCATTCACCAAAAAGTTGTATCAGCTGATAAGAGACTCGAGTCTTGAAAACTGATGATGATGTAAAGAGTTCCCGATTCTGTCTATAGCTTTTTTTGGCTGTACTTGTATTATAGTGAGATATTAAAGAGTAGTTTAGCAGTGTAATTGCTTCTTTTTTTTTTGGAAATCTCTGGGAAACACACAACCTCTACCGTTCAGGTGAGCATTCTGTAGTATGCACTTTGTGGTAAAATGCTCACTAGGCAAGCTCCATGTAACAAGCTCATCTCTTCTTCAAACTCTCTATGTAACTCCTAAAATATGAAGGTTGTAGATGGATTACATGTAAATGATTCCTTCGTTTGTCAACTAGAATAGCTGCA</genome_strand>
        <mrna_strand>AAATTTTGTTAGAATGTGTTGAACAAGTTGAGGAGGAGCAAATTAGGAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGCTGTCCGATGCAGAGCTGGCTAGACTTAGCAAGGATCTA....................................................................................GCAATACTACGATGTGATCTTCCATCCTACATGGTTCCTTTTGTCCCTGATGACTTGATATTTGAGAAACCAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGTGGGGAGAAATTTACTAGCCTCTTAACAGCTATTAGTGCTTATGCGGAAGGATTTTCCGCAGATAACATAATTAGAAGAGCTTTGTATTTGTGGAAGAAACTTGAGAAACAAACTGTAGATACCATTCACCAAAAAGTTGTATCAGCTGATAAGAGACTCGAGTCTTGAAAACTGATGATGATGTAAAGAGTTCCCGATTCTGTCTATAGCTTTTTTTGGCTGTACTTGTATTATAGTGAGATATTAAAGAGTAGTTTAGCAGTGTAATTGCTTCTTTTTTTTTTGGAAATCTCTGGGAAACACACAACCTCTACCGTTCAGGTGAGCATTCTGTAGTATGCACTTTGTGGTAAAATGCTCACTAGGCAAGCTCCATGTAACAAGCTCATCTCTTCTTCAAACTCTCTATGTAACTCCTAAAATATGAAGGTTGTAGATGGATTACATGTAAATGATTCCTTCGTTTGTCAACTAAAAAAAAAAAA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E252131" ref_strand="+" ref_description="SGN-E252131 [cLEG-8-E20]">
      <seq>aaagtacgaatagaaacatcaaactgattttgtatttgaactcatcaaattctgtctgagcaatatgagcattattggatgtttgattaggatgagcaccatatgctactggtggagatgactgtgtacttgcgcgatttcgaaggaactcattatattcgttttgaacaagaggatcataactgggtggtggaccatgcaaaatatgacatatgtcacgagtgtatccagacttatgacaatgactatacttggattgaggtttcccaaaacgtcgtcccccctaccgattctccgtagactgatatgtacgcttttcaaaggtttgagatgcgagaatagaggagtcaacagtgggtgatgaaacgactttgtgactaggaggtgccgcaagacgaaggaggcgagagaataattcatcgattgtagaaattgtagggctagctaaaatctgatcacgcataaaatcgttatcaggaggaagtccagcaagcgtaagaactagaaacaatgtttttctatgttcttgttgtttttccacatccgtagttactggcatcaacatgtcgaattcctccatgactgcctgtacctgtcccaagtaagt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="103601" stop="101576"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="103301" g_stop="103265" g_length="37"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="37" r_length="37" r_score="0.946"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="103264" i_stop="102444" i_length="821">
            <donor d_prob="0.000" d_score="0.00"/>
            <acceptor a_prob="0.000" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="102443" g_stop="101876" g_length="568"/>
          <reference_exon_boundary r_type="cDNA" r_start="38" r_stop="607" r_length="570" r_score="0.923"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-E252131" ref_strand="+">
        <total_alignment_score>0.923</total_alignment_score>
        <cumulative_length_of_scored_exons>605</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252131" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="103301" e_stop="103265"/>
          <exon e_start="102443" e_stop="101876"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAAGTACGAATAGAAATACCAAACTGATTTTGTATTTCAGCAAAGAAACTTTTGAAAATAGAAAATAACTCAGAACGATCTTTCATTAAAAAAACCCAAGTACATCTTGAATAATCATCACCGAAACTAACAAAATAACGAAATCCTAAGGTGGAACTGACTCTACTAGGACCCCAAATATCAGAATGAACTAATGAAAAAATAGACTCAGAACGACCCTCAGTATTACGAGAAAATGTAGCACGAGTGTGTTTCCCAAGTTGACACGACTCAATCTAATGTAGATAAACTAGACAAACTAGGCACTATCCTTTGTAGTTTGGATAGACTCGAATGTCCCAGACGTTTGTGAATTAGATCTGGGGAATCTTTAATGGAGCATGTTGTCAATGAATTTGAAGAGGTAAGATAGTAAAGGCCTTGTGATTCATTTCCTGTTCCAATAATCTGTCCCGTACTACGGTCCTGTATGAGAAAAAAAAATCATCGAAAAAAGTTATGCTACAATGTAGAGATTTTGTCAAACGACTAATAGATGCTAGATGAAAAGGAGAACCAAGAACATAAAGAACAAAGTCTAGGGTGACAGAAGATAGGGGTTTGGCTTTTCCAACCCCTTTTGGTTTTGTCTAGATCCCATTGGCTAAAGTAATAGCTGGAAGAGATTGCGAATAAACAATATCGAATAAAAGTGATTTATTACCAGAAATATGATCAAAAGCCCTAGAGCCCACGACCCATGTTCCAATAGTACTACATTGCAACACACAAGCAAAAGAATTACCCGTGACAGACAACATCAGGTTGTGCAATCGAAACTACTTGTGGAGATGTTTGTTTATTTGCACGATACTGAAGGAACTCATCATATTCTATCTGAGCAATATGAGCATTATTGGATGGTTGATTAGGTTGAGCACCATATGCTACTGATGGAGATGCTTGTTTACTTGCGCGATTTCGAAGGAACTCATTATATTCCTTTAGAACAAGAGGATCATAACTGGGTGGTGGACCATGCTAAATATGACATATGTCACGAGTGTGTCCAGACTTATGACAATGACTACACTTGGATCGAGGTTT-CCAAAACGTCTTCCCCCTCGCCGATTCTCCGTAGACTGATATGTACACTTTTCAAAGGTTTGAGATGCGAGAATAGAGGAGTCAACAGTGGGTGATGAAACGA-TTT-TGACTAGGAGTTGCCGCAAGACGAAGGAAGCGAGAGAATAATTCATTGATTGTAGGAACTGTAGGGCTAGCTAAAATCTGATCACAACACAGAATAATTATCAGGAGGAAGTCCAGCAAGAGTAAGAATTAGAAACAATGTTTGTCTATGTTCTTGTTGTTTTTCCACATCCGTAGTTACTGGCATCAACGTGTTGAGTTCCTCTAAGACTGCCTGTACCTGTCCCAAGTAAGT</genome_strand>
        <mrna_strand>AAAGTACGAATAGAAACATCAAACTGATTTTGTATTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTCATCAAATTCTGTCTGAGCAATATGAGCATTATTGGATGTTTGATTAGGATGAGCACCATATGCTACTGGTGGAGATGACTGTGTACTTGCGCGATTTCGAAGGAACTCATTATATTCGTTTTGAACAAGAGGATCATAACTGGGTGGTGGACCATGCAAAATATGACATATGTCACGAGTGTATCCAGACTTATGACAATGACTATACTTGGATTGAGGTTTCCCAAAACGTCGTCCCCCCTACCGATTCTCCGTAGACTGATATGTACGCTTTTCAAAGGTTTGAGATGCGAGAATAGAGGAGTCAACAGTGGGTGATGAAACGACTTTGTGACTAGGAGGTGCCGCAAGACGAAGGAGGCGAGAGAATAATTCATCGATTGTAGAAATTGTAGGGCTAGCTAAAATCTGATCAC-GCATAAAATCGTTATCAGGAGGAAGTCCAGCAAGCGTAAGAACTAGAAACAATGTTTTTCTATGTTCTTGTTGTTTTTCCACATCCGTAGTTACTGGCATCAACATGTCGAATTCCTCCATGACTGCCTGTACCTGTCCCAAGTAAGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E487611" ref_strand="+" ref_description="SGN-E487611 [cSTE-26-G17]">
      <seq>gtgaagcactttctcattctggatggaggcaggctatggttgatgagatgtctgctttacataagagtggtacttgggagcttgtctcccttcctgcaggtaaatctactgttggttgtcgttgggtttatgctatcaaaattggtccagacggtcaggttgatcgacttaaggctcgccttgttgccaaagggtatactcagatatttgggctagattatagtgacacttttgctcctgtggctaaaattgcatctgttcgtctttttctatctatggttgccgttcgtcattggcctcttcatcagttggacattaagaatgcttttctgcatggttatcttgaggaagaagtctatatggagcaaccacctggttttgttgctcagggggagtctagtagccttgtatgtcgattgcgcaggtcactctatggtctaaaacagtctcctcgagcttggtttgggaagttcagcacagtaattcaggagtttggcatgactcgtagtggagctgatcactctgtgttttatcggcattctgcaccaagtcaatgtatctatttggttgtttatgttgatgatattgttatcaccggtaatgatcaagatggtatcaccgatttgaagcaacatctctttaagcacttccagactaaagaccttggcagattgaagtattttctangtattgaggttgctcagtctagatcaggtattgttatttctcaacgcaagtatgccttagacattcttgaggagacaggaatgatggg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="+" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="103844" stop="105212"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104144" g_stop="104912" g_length="769"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="775" r_length="775" r_score="0.927"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="+" ref_id="SGN-E487611" ref_strand="+">
        <total_alignment_score>0.927</total_alignment_score>
        <cumulative_length_of_scored_exons>769</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E487611" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104144" e_stop="104912"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGCACTTTCTCATTCTGGATGGAGGCAAGTTATGGTTGATGAGATGTCTGCTTTACATAAGAGTGGTACTTGGGAGCTTGTCTCCCTTCCTGCAGTTAAATCTACCGTTGGTTGTCGTTGGGTTTATGAAGTCAAAATTGGTCCAGATGGTCAGGTTGATCAACTTAAGGCTCGCCTTGTCGCCAAAGGGTATACTCAGATATTTGGGCTAGATTATAGTGACACTTTTGCTCCTGTGGCTAAAATAGCATTTGTTTGTCTTTTTCTATCTATGGCTACCGTTCGTCATTGGCCTCTATATCAGTTGGACATAAAGAACGTTTTTCTGCATGGTGATCTTGAGAAAGAAGTC--TATGGAGCAACCACCTGGTTTTGTTGCTCAGGGGGAGTCTAGTAGCCTTGT-TGTCGATTGCGTAGGTCACTCTATGGTCTGAAACAGTCTCCTCGAGCTTGGTTTGGGAAGTTCAGCACAGTAATTCAGGAGTTTGGCATGACTAGTAGTGGAGTTGATCACTCTGTGTTTTATCGACATTCCACACCAGGTCGATGTATCTATTTGGCTGTTTATG-T--TGATATTGTTATCACCAGTAATGATCAAGATGGTATCACCAATTTAAAGCAACATCTTTTTAAGCACTTTCAAACTAAAGACCTTGGCAGATTGAAGTATTTTCTAGGTATTGAGGTTGCTCAATCTAGATCAGGCATTGTTATCTCTCAACGCAAGTATACCTTAGACATTCTTGAGGAGACAGTAATGATGGG</genome_strand>
        <mrna_strand>GTGAAGCACTTTCTCATTCTGGATGGAGGCAGGCTATGGTTGATGAGATGTCTGCTTTACATAAGAGTGGTACTTGGGAGCTTGTCTCCCTTCCTGCAGGTAAATCTACTGTTGGTTGTCGTTGGGTTTATGCTATCAAAATTGGTCCAGACGGTCAGGTTGATCGACTTAAGGCTCGCCTTGTTGCCAAAGGGTATACTCAGATATTTGGGCTAGATTATAGTGACACTTTTGCTCCTGTGGCTAAAATTGCATCTGTTCGTCTTTTTCTATCTATGGTTGCCGTTCGTCATTGGCCTCTTCATCAGTTGGACATTAAGAATGCTTTTCTGCATGGTTATCTTGAGGAAGAAGTCTATATGGAGCAACCACCTGGTTTTGTTGCTCAGGGGGAGTCTAGTAGCCTTGTATGTCGATTGCGCAGGTCACTCTATGGTCTAAAACAGTCTCCTCGAGCTTGGTTTGGGAAGTTCAGCACAGTAATTCAGGAGTTTGGCATGACTCGTAGTGGAGCTGATCACTCTGTGTTTTATCGGCATTCTGCACCAAGTCAATGTATCTATTTGGTTGTTTATGTTGATGATATTGTTATCACCGGTAATGATCAAGATGGTATCACCGATTTGAAGCAACATCTCTTTAAGCACTTCCAGACTAAAGACCTTGGCAGATTGAAGTATTTTCTANGTATTGAGGTTGCTCAGTCTAGATCAGGTATTGTTATTTCTCAACGCAAGTATGCCTTAGACATTCTTGAGGAGACAGGAATGATGGG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E427595" ref_strand="+" ref_description="SGN-E427595 [STM-48-D14]">
      <seq>gtgaagcactttctcattctggatggaggcaggctatggttgatgagatgtctgctttacataagagtggtacttgggagcttgtctcccttcctgcaggtaaatctactgttggttgtcgttgggtttatgctatcaaaattggtccagacggtcaggttgatcgacttaaggctcgccttgttgccaaagggtatactcagatatttgggctagattatagtgacacttttgctcctgtggctaaaattgcatctgttcgtctttttctatctatggttgccgttcgtcattggcctcttcatcagttggacattaagaatgcttttctgcatggttatcttgaggaagaagtctatatggagcaaccacctggttttgttgctcanggggagtctagtagccttgtatgtcgattgcgcaggtcactctatggtctaaaacagtctcctcgagcttggtttgggaagttcagcacagtaattcaggagtttggcatgactcgtagtggagctgatcactctgtgttttatcggcattctgcaccaagtcaatgtatctattt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="+" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="103844" stop="105005"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="104144" g_stop="104705" g_length="562"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="565" r_length="565" r_score="0.932"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="+" ref_id="SGN-E427595" ref_strand="+">
        <total_alignment_score>0.932</total_alignment_score>
        <cumulative_length_of_scored_exons>562</cumulative_length_of_scored_exons>
        <coverage percentage="0.995" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E427595" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="104144" e_stop="104705"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAAGCACTTTCTCATTCTGGATGGAGGCAAGTTATGGTTGATGAGATGTCTGCTTTACATAAGAGTGGTACTTGGGAGCTTGTCTCCCTTCCTGCAGTTAAATCTACCGTTGGTTGTCGTTGGGTTTATGAAGTCAAAATTGGTCCAGATGGTCAGGTTGATCAACTTAAGGCTCGCCTTGTCGCCAAAGGGTATACTCAGATATTTGGGCTAGATTATAGTGACACTTTTGCTCCTGTGGCTAAAATAGCATTTGTTTGTCTTTTTCTATCTATGGCTACCGTTCGTCATTGGCCTCTATATCAGTTGGACATAAAGAACGTTTTTCTGCATGGTGATCTTGAGAAAGAAGTC--TATGGAGCAACCACCTGGTTTTGTTGCTCAGGGGGAGTCTAGTAGCCTTGT-TGTCGATTGCGTAGGTCACTCTATGGTCTGAAACAGTCTCCTCGAGCTTGGTTTGGGAAGTTCAGCACAGTAATTCAGGAGTTTGGCATGACTAGTAGTGGAGTTGATCACTCTGTGTTTTATCGACATTCCACACCAGGTCGATGTATCTATTT</genome_strand>
        <mrna_strand>GTGAAGCACTTTCTCATTCTGGATGGAGGCAGGCTATGGTTGATGAGATGTCTGCTTTACATAAGAGTGGTACTTGGGAGCTTGTCTCCCTTCCTGCAGGTAAATCTACTGTTGGTTGTCGTTGGGTTTATGCTATCAAAATTGGTCCAGACGGTCAGGTTGATCGACTTAAGGCTCGCCTTGTTGCCAAAGGGTATACTCAGATATTTGGGCTAGATTATAGTGACACTTTTGCTCCTGTGGCTAAAATTGCATCTGTTCGTCTTTTTCTATCTATGGTTGCCGTTCGTCATTGGCCTCTTCATCAGTTGGACATTAAGAATGCTTTTCTGCATGGTTATCTTGAGGAAGAAGTCTATATGGAGCAACCACCTGGTTTTGTTGCTCANGGGGAGTCTAGTAGCCTTGTATGTCGATTGCGCAGGTCACTCTATGGTCTAAAACAGTCTCCTCGAGCTTGGTTTGGGAAGTTCAGCACAGTAATTCAGGAGTTTGGCATGACTCGTAGTGGAGCTGATCACTCTGTGTTTTATCGGCATTCTGCACCAAGTCAATGTATCTATTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E559246" ref_strand="+" ref_description="SGN-E559246 [18712]">
      <seq>caacacttcattagattgttggacttctctaataaaatgaaacttgattttgatatgcttagttcgaccatgaaacactggattttttgagattgaaactgttgaactgttgtcacacataatcttggtagcttctgtttgttcatggcccaagtccttcaccatcttccttagccagatagcttgattcacagtagatgcaacaactatgtacttagcttctgttgttgattgagttgtagtgtcttgtttcctagagctccaactaaaacagcttgtccccaaacaaaaaatatatccagaggtgcttctggaatcgtcaactccgccaccccaatcactatcagagtacccgatcatgttcatagttagtcagatattgagaaaaaagttccaaacttgttggttcctttaatatacctcaacactcttttagccgctgtgaagtgtgtgtctctaggcgaatgcatgaacctacagagaaaacttacaacaaagagaatgacaggtctgcttgcggttagatatagaagattgtcaattaagcttctatacatactattatccactttttcggaatcctcatccttgccaagcttcacactagtagagattggagtacttacaagtttgcaatcttgcattttgaacctggttcgaatattcga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="-" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="112590" stop="111320"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112290" g_stop="111620" g_length="671"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="668" r_length="668" r_score="0.915"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="-" ref_id="SGN-E559246" ref_strand="+">
        <total_alignment_score>0.915</total_alignment_score>
        <cumulative_length_of_scored_exons>671</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E559246" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112290" e_stop="111620"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CAACACTTCATTAGATTGTTGGACTTCTCTAATAAAATGAAACTTGATCTTGATATGTTTAGTTCGACCATGAAAAACTGGATTTTTTTGAGATTGAAACTGCTGAACTGTTGTCACACATGATCTTGGTAGCTTCTGTTTGTTCATGGCCTAAGTCCTTCATCATCTTCCTTAGCCAGATAACTTGATTCATA--AGATGCAACAGCTATGTACTCAGCTTCTGCTGTTGATTGAGTTGTAGTTTCTTGTTTTCTAGAGCTCCAACTAAAACAACTTGTCCCCAAACAGGAAAGATATCCAGATGTGCTTCTGGAATCATCAACTCCACCACCCCAATCACTATCAGAGTACCCGATCAGGTTCATAGTTACTTCAGCAGATGTTGGGAAAAAAATTCCAAACTTGCTAGTTCCTTTAATATACCTTAACACTCTTTTAGCAGCTGTGAGGTGTGTGTCTCTAGGCGAATGCATGAACCTAGAGAGCAAACTAACAACAAATAGAATGTCAGGCCTGCTTGCGGTTAGATATAGAAGACTGCCAATTAAGCTTCTATACATACTATCATCCACTTTTTCGGAATCCTCATCCTTGCCAAGCTTCACACAAGTAGATATTGGAGTACTCACAGGTTTGCAGTCTTGCATTTTGAACCTGCTTAGAATATCCGA</genome_strand>
        <mrna_strand>CAACACTTCATTAGATTGTTGGACTTCTCTAATAAAATGAAACTTGATTTTGATATGCTTAGTTCGACCATGAAACACTGGA-TTTTTTGAGATTGAAACTGTTGAACTGTTGTCACACATAATCTTGGTAGCTTCTGTTTGTTCATGGCCCAAGTCCTTCACCATCTTCCTTAGCCAGATAGCTTGATTCACAGTAGATGCAACAACTATGTACTTAGCTTCTGTTGTTGATTGAGTTGTAGTGTCTTGTTTCCTAGAGCTCCAACTAAAACAGCTTGTCCCCAAACAAAAAATATATCCAGAGGTGCTTCTGGAATCGTCAACTCCGCCACCCCAATCACTATCAGAGTACCCGATCATGTTCATAGTTA-GT---CAGATATTGAGAAAAAAGTTCCAAACTTGTTGGTTCCTTTAATATACCTCAACACTCTTTTAGCCGCTGTGAAGTGTGTGTCTCTAGGCGAATGCATGAACCTACAGAGAAAACTTACAACAAAGAGAATGACAGGTCTGCTTGCGGTTAGATATAGAAGATTGTCAATTAAGCTTCTATACATACTATTATCCACTTTTTCGGAATCCTCATCCTTGCCAAGCTTCACACTAGTAGAGATTGGAGTACTTACAAGTTTGCAATCTTGCATTTTGAACCTGGTTCGAATATTCGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato_potato" ref_id="SGN-E249673" ref_strand="+" ref_description="SGN-E249673 [cLEF-56-L5]">
      <seq>ttttattagagaagtccaacaatttaatgaagtgttgcttgttcattgttcatctgagaactagctagctgacattttcaccaagtcattgccaaaggaaaggtttgaagatccgaggcaaagaattagtgtttgccacaaaaatgccaaggaggagtgttagacaattgacattttttcagcttattattatttttactattttttacttatttcaatttagtgcttcctattttctagtagacttagtcaactttagttgctcaactttctgaag</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0077H15-oN4lP/GenomeThreader_SGN_E_tomato_potato/un_xed_seqs" temp_id="C00HBa0077H15.1" temp_strand="+" temp_description="C00HBa0077H15.1  AC213007.2 htgs_phase:3 submitted_to_sgn_as:C12HBa0077H15">
        <position start="111954" stop="112831"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="112254" g_stop="112531" g_length="278"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="277" r_length="277" r_score="0.968"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0077H15.1" gen_strand="+" ref_id="SGN-E249673" ref_strand="+">
        <total_alignment_score>0.968</total_alignment_score>
        <cumulative_length_of_scored_exons>278</cumulative_length_of_scored_exons>
        <coverage percentage="1.004" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0077H15.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-E249673" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="112254" e_stop="112531"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTTTATTAGAGAAGTCCAACAATCTAATGAAGTGTTGCTTGTTCATTGTACATCTGAGAACCAGCTAGCTGACATTTTCACCAAGTCATTGCCAAAGGAAAGGTTTGAAGATCTGAGGCAAAGAATTAGTGTTTGCCACAAAAATGCCAAGGAGGAGTGTTAGACAATTCACATTTTTTTAGCTTATTATTATTTTTACTGTTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTCTAGCTAGACTTAGTCAACTTTAGTTGCTCAACTTTCTTAAG</genome_strand>
        <mrna_strand>TTTTATTAGAGAAGTCCAACAATTTAATGAAGTGTTGCTTGTTCATTGTTCATCTGAGAACTAGCTAGCTGACATTTTCACCAAGTCATTGCCAAAGGAAAGGTTTGAAGATCCGAGGCAAAGAATTAGTGTTTGCCACAAAAATGCCAAGGAGGAGTGTTAGACAATTGACATTTTTTCAGCTTATTATTATTTTTACTATTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTCTAG-TAGACTTAGTCAACTTTAGTTGCTCAACTTTCTGAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>42</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="+" PGL_start="13407" PGL_stop="14254"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="13407" e_stop="14254"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.933"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.933">
            <gDNA_exon_boundary e_start="13407" e_stop="14254" e_length="848"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13407" stop="13920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E286708" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13539" stop="14254"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E578039" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="13547" stop="13920"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E577891" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>ACGCGACGGACCGTCGTGGTCACGACGGACCGTCATGGACTTCGTCGTCCCATACTTAGCAATTTCTTCTGCTGCTCTCTTCATTCCCCTCAACCGCAAGTATGACGGACTATCATAGGCACAACGATCCGTCGAGGGTCTTCGTTTCAAAATACTTCAACTCTTGGAATCTGGGTACTGGGACCACTTCTCTGATCTTCACGACGAACCTGCAGGACGGACCGTCATAGCCATGACGGACCGTCACAAGCTTCGTAATCCCACACTTGGTCAGCCTTCCCCATCTTCCTTCAGCAGCTGCACCACGCTGCCACCTACGGACCGTCACAGGAACGACGGACCGTCATAAGCTCCATAGGTGGTATCTTCTGCATTTTTTCGCTCAAAATCTCCGCATTCAGCTTTGGACAGATTTCTTGCAAAACAAAGAGAAACTTATATAAAAATTAGCACAAAAAGGCTTTCAGACACACTAAACTTAAGGAAAAAGTATTCATTATACCGTGAAACCACGGTATATCAACACCCTCAACTTAAATTTGTTGCTTGTCCTCAAACGACGCACTATGACTCACTACACAATCTTTGTACAATAGTATTCATGTTTTATCCTTTGCAATCATTTGGCTATCAATCCCGATTAATCTCATCAAATCTATGCATGCTATAACTATTAGGCTTGAATTTTGTAGGATTCGAACATGACACAGACTCACCATGCACTAACACCTATCCTCTTCAATTTCTCACCGAGGTGCTAACAATTCCGGTATTGCAACTAGTGTCCTCACTTCAAAACAAAATCCTCATTTTTCACACAATGATTTCAGTTTGAGTATAAGGATAAC</gDNA_template>
            <first_frame> T  R  R  T  V  V  V  T  T  D  R  H  G  L  R  R  P  I  L  S  N  F  F  C  C  S  L  H  S  P  Q  P  Q  V  *  R  T  I  I  G  T  T  I  R  R  G  S  S  F  Q  N  T  S  T  L  G  I  W  V  L  G  P  L  L  *  S  S  R  R  T  C  R  T  D  R  H  S  H  D  G  P  S  Q  A  S  *  S  H  T  W  S  A  F  P  I  F  L  Q  Q  L  H  H  A  A  T  Y  G  P  S  Q  E  R  R  T  V  I  S  S  I  G  G  I  F  C  I  F  S  L  K  I  S  A  F  S  F  G  Q  I  S  C  K  T  K  R  N  L  Y  K  N  *  H  K  K  A  F  R  H  T  K  L  K  E  K  V  F  I  I  P  *  N  H  G  I  S  T  P  S  T  *  I  C  C  L  S  S  N  D  A  L  *  L  T  T  Q  S  L  Y  N  S  I  H  V  L  S  F  A  I  I  W  L  S  I  P  I  N  L  I  K  S  M  H  A  I  T  I  R  L  E  F  C  R  I  R  T  *  H  R  L  T  M  H  *  H  L  S  S  S  I  S  H  R  G  A  N  N  S  G  I  A  T  S  V  L  T  S  K  Q  N  P  H  F  S  H  N  D  F  S  L  S  I  R  I   </first_frame>
            <second_frame>  R  D  G  P  S  W  S  R  R  T  V  M  D  F  V  V  P  Y  L  A  I  S  S  A  A  L  F  I  P  L  N  R  K  Y  D  G  L  S  *  A  Q  R  S  V  E  G  L  R  F  K  I  L  Q  L  L  E  S  G  Y  W  D  H  F  S  D  L  H  D  E  P  A  G  R  T  V  I  A  M  T  D  R  H  K  L  R  N  P  T  L  G  Q  P  S  P  S  S  F  S  S  C  T  T  L  P  P  T  D  R  H  R  N  D  G  P  S  *  A  P  *  V  V  S  S  A  F  F  R  S  K  S  P  H  S  A  L  D  R  F  L  A  K  Q  R  E  T  Y  I  K  I  S  T  K  R  L  S  D  T  L  N  L  R  K  K  Y  S  L  Y  R  E  T  T  V  Y  Q  H  P  Q  L  K  F  V  A  C  P  Q  T  T  H  Y  D  S  L  H  N  L  C  T  I  V  F  M  F  Y  P  L  Q  S  F  G  Y  Q  S  R  L  I  S  S  N  L  C  M  L  *  L  L  G  L  N  F  V  G  F  E  H  D  T  D  S  P  C  T  N  T  Y  P  L  Q  F  L  T  E  V  L  T  I  P  V  L  Q  L  V  S  S  L  Q  N  K  I  L  I  F  H  T  M  I  S  V  *  V  *  G  *  </second_frame>
            <third_frame>   A  T  D  R  R  G  H  D  G  P  S  W  T  S  S  S  H  T  *  Q  F  L  L  L  L  S  S  F  P  S  T  A  S  M  T  D  Y  H  R  H  N  D  P  S  R  V  F  V  S  K  Y  F  N  S  W  N  L  G  T  G  T  T  S  L  I  F  T  T  N  L  Q  D  G  P  S  *  P  *  R  T  V  T  S  F  V  I  P  H  L  V  S  L  P  H  L  P  S  A  A  A  P  R  C  H  L  R  T  V  T  G  T  T  D  R  H  K  L  H  R  W  Y  L  L  H  F  F  A  Q  N  L  R  I  Q  L  W  T  D  F  L  Q  N  K  E  K  L  I  *  K  L  A  Q  K  G  F  Q  T  H  *  T  *  G  K  S  I  H  Y  T  V  K  P  R  Y  I  N  T  L  N  L  N  L  L  L  V  L  K  R  R  T  M  T  H  Y  T  I  F  V  Q  *  Y  S  C  F  I  L  C  N  H  L  A  I  N  P  D  *  S  H  Q  I  Y  A  C  Y  N  Y  *  A  *  I  L  *  D  S  N  M  T  Q  T  H  H  A  L  T  P  I  L  F  N  F  S  P  R  C  *  Q  F  R  Y  C  N  *  C  P  H  F  K  T  K  S  S  F  F  T  Q  *  F  Q  F  E  Y  K  D  N </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0077H15.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13765" stop="14076"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>309</number_coding_nucleotides>
                  <number_encoded_amino_acids>103</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVSSAFFRSKSPHSALDRFLAKQRETYIKISTKRLSDTLNLRKKYSLYRETTVYQHPQLKFVACPQTTHYDSLHNLCTIVFMFYPLQSFGYQSRLISSNLCML*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0077H15.1" strand="+"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="13525" stop="13755"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>228</number_coding_nucleotides>
                  <number_encoded_amino_acids>76</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>AQRSVEGLRFKILQLLESGYWDHFSDLHDEPAGRTVIAMTDRHKLRNPTLGQPSPSSFSSCTTLPPTDRHRNDGPS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="76868" PGL_stop="75122"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="76868" e_stop="76214"/>
            <exon e_start="76074" e_stop="75122"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.995" acc_prob="0.962" e_score="1.000"/>
          <exon-only e_score="0.945"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="76868" e_stop="76214" e_length="655"/>
          </exon>
          <intron i_serial="1" don_prob="0.995" acc_prob="0.962">
            <gDNA_intron_boundary i_start="76213" i_stop="76075" i_length="139"/>
          </intron>
          <exon e_serial="2" e_score="0.945">
            <gDNA_exon_boundary e_start="76074" e_stop="75122" e_length="953"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76868" stop="76214"/>
              <exon start="76074" stop="75910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E704593" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76867" stop="76214"/>
              <exon start="76074" stop="76011"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E318008" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76858" stop="76214"/>
              <exon start="76074" stop="75895"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726975" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76857" stop="76214"/>
              <exon start="76074" stop="75910"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E710642" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76857" stop="76214"/>
              <exon start="76074" stop="75952"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E727059" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76856" stop="76364"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254671" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76846" stop="76214"/>
              <exon start="76074" stop="75790"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E702892" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76836" stop="76356"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E309824" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76829" stop="76214"/>
              <exon start="76074" stop="75992"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E426025" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76829" stop="76227"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E455882" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76826" stop="76214"/>
              <exon start="76074" stop="75471"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E745323" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76823" stop="76235"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E276718" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76823" stop="76260"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E274825" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76820" stop="76422"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E337608" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76819" stop="76229"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260138" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76818" stop="76214"/>
              <exon start="76074" stop="75785"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E700783" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76814" stop="76214"/>
              <exon start="76074" stop="75789"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E726467" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76811" stop="76214"/>
              <exon start="76074" stop="75825"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E705865" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76803" stop="76214"/>
              <exon start="76074" stop="75899"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544599" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76802" stop="76262"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E307617" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76779" stop="76214"/>
              <exon start="76074" stop="76037"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E721571" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76772" stop="76263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E247977" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76770" stop="76214"/>
              <exon start="76074" stop="75969"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E561448" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76757" stop="76214"/>
              <exon start="76074" stop="75668"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E747531" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76457" stop="76214"/>
              <exon start="76074" stop="75537"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E694293" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76407" stop="76214"/>
              <exon start="76074" stop="75518"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E712360" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="76355" stop="76214"/>
              <exon start="76074" stop="75446"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E544598" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75987" stop="75465"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E303446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75861" stop="75445"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E354588" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="75818" stop="75122"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E608899" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CTCAAATACAGGACGATTTTGGGGGAAAACCCCTTTTACATCGGGAAAGTAAATCACCGGCAACAATCAAATCAGCGCCGACCGCTGTCCGCCGTCCGCCGACCGCCTAAGATGCCGGTATTTAAAACTCCATTTAACGGTTACTCCGTAAAATTCAGTCCCTTCTACGAAAACAAACTAGCTGTGGCCACTGCGCAGAATTTCGGCATCCTTGGTAACGGGAGAGTTCACATTCTTCAGCTCAATCCAAACGGACCGGTATCGGAACTTGCGGCTTTTGACACAGCTGATGGAGTTTACGACGTTTGCTGGTCGGAAGCTCACGATTCACTTGTTATTGCTGGAAGTGGCGATGGTTCTGTGAAACTCTATGACCTTTCTTTGCCTCCCACCAATAACCCTATTCGTTCTTTTAAGGAACATACACGGGAAGTTCACTCTGTTGACTATAATACCGTGAGAAAAGATTCCTTCTTGTCAGCGTCTTGGGATGATACTGTGAAGCTATGGACTGTTGATAGAAATGCCAGTGTAAGGACTTTTAAGGAACATGCTTATTGTGTCTATTCCGCTGCTTGGAATCCAAGACATGCTGATATCTTTGCATCTGCTTCTGGGGATTGTACTACTCGCATCTGGGATGTCCGCGAACCAG : GTTCTACAATGATTCTGCCTGCACACGAGTTTGAAATCCTCACATGTGATTGGAGTAAGTATGACGATTGTATCATTGCAACTGCATCCGTTGATAAGTCAATCAAGGTTTGGGATGTTAGGAATTATAGAGTGCCAATATCAGTGCTTAATGGGCATGGATATGCAGTGAGGAAAGTGAGGTTTTCACCACATAGAGCGAGTGCAATGGTTTCTTGTTCATATGACATGACAGTTTGCATGTGGGATTACATGGTGGAAGATGCACTTATTGGGAGGTATGATCATCACACAGAGTTTGCTGTAGGAGTTGATATGAGCGTTCTCGTTGAAGGTCTATTGGCTAGTACAGGATGGGATGAACTTGTTTATGTTTGGCAACATGGAATGGACCCTAGAGCTTCTTGACAAAGGGAAGTCAAACATTTTCTTCTTTTTACTTTTATGTACTTAATGCTAAGAGAGGAAGTGAATAAACTGCTTATGTTTGGAAACATGGAATGGGAACTATTTATGATGTCTGCTGTTGAAGTTGTAAAATAATTTGAAGTTTCATTGTATTTAAGATTTTGGTAAAACCTTGGTAAATGACATTTACACCAAACAGCTTTGATGTTTCAGAAAATATGCGCTATATGTCAATCACTTTGGGTTCTGTATGCTTTTTTGGAATGTCAATTCCCTGAATTTCTTTAACATTATTCAGAATTTTACGAGGGGCAGTGGGTCGGGTAAGGGTTGAAAAGAAGGCACATACTTCTGATCGGGGTTTAGCGTGTTCTGTTTATAAAAAATAACAAACGGAGATCCTATAAGAGAGCTTACAGAACAGGTACTTCATTTCAAATATGTGCAATGCCATTTTCACTCAAAGGCCTGCATTCATACTTCAGTGGAAGATTCGTCCCTGATCAAGCACTTAGAGTCATCCTATAAGAGAGCGTACAGAACAGG</gDNA_template>
            <first_frame> L  K  Y  R  T  I  L  G  E  N  P  F  Y  I  G  K  V  N  H  R  Q  Q  S  N  Q  R  R  P  L  S  A  V  R  R  P  P  K  M  P  V  F  K  T  P  F  N  G  Y  S  V  K  F  S  P  F  Y  E  N  K  L  A  V  A  T  A  Q  N  F  G  I  L  G  N  G  R  V  H  I  L  Q  L  N  P  N  G  P  V  S  E  L  A  A  F  D  T  A  D  G  V  Y  D  V  C  W  S  E  A  H  D  S  L  V  I  A  G  S  G  D  G  S  V  K  L  Y  D  L  S  L  P  P  T  N  N  P  I  R  S  F  K  E  H  T  R  E  V  H  S  V  D  Y  N  T  V  R  K  D  S  F  L  S  A  S  W  D  D  T  V  K  L  W  T  V  D  R  N  A  S  V  R  T  F  K  E  H  A  Y  C  V  Y  S  A  A  W  N  P  R  H  A  D  I  F  A  S  A  S  G  D  C  T  T  R  I  W  D  V  R  E  P   : G  S  T  M  I  L  P  A  H  E  F  E  I  L  T  C  D  W  S  K  Y  D  D  C  I  I  A  T  A  S  V  D  K  S  I  K  V  W  D  V  R  N  Y  R  V  P  I  S  V  L  N  G  H  G  Y  A  V  R  K  V  R  F  S  P  H  R  A  S  A  M  V  S  C  S  Y  D  M  T  V  C  M  W  D  Y  M  V  E  D  A  L  I  G  R  Y  D  H  H  T  E  F  A  V  G  V  D  M  S  V  L  V  E  G  L  L  A  S  T  G  W  D  E  L  V  Y  V  W  Q  H  G  M  D  P  R  A  S  *  Q  R  E  V  K  H  F  L  L  F  T  F  M  Y  L  M  L  R  E  E  V  N  K  L  L  M  F  G  N  M  E  W  E  L  F  M  M  S  A  V  E  V  V  K  *  F  E  V  S  L  Y  L  R  F  W  *  N  L  G  K  *  H  L  H  Q  T  A  L  M  F  Q  K  I  C  A  I  C  Q  S  L  W  V  L  Y  A  F  L  E  C  Q  F  P  E  F  L  *  H  Y  S  E  F  Y  E  G  Q  W  V  G  *  G  L  K  R  R  H  I  L  L  I  G  V  *  R  V  L  F  I  K  N  N  K  R  R  S  Y  K  R  A  Y  R  T  G  T  S  F  Q  I  C  A  M  P  F  S  L  K  G  L  H  S  Y  F  S  G  R  F  V  P  D  Q  A  L  R  V  I  L  *  E  S  V  Q  N  R </first_frame>
            <second_frame>  S  N  T  G  R  F  W  G  K  T  P  F  T  S  G  K  *  I  T  G  N  N  Q  I  S  A  D  R  C  P  P  S  A  D  R  L  R  C  R  Y  L  K  L  H  L  T  V  T  P  *  N  S  V  P  S  T  K  T  N  *  L  W  P  L  R  R  I  S  A  S  L  V  T  G  E  F  T  F  F  S  S  I  Q  T  D  R  Y  R  N  L  R  L  L  T  Q  L  M  E  F  T  T  F  A  G  R  K  L  T  I  H  L  L  L  L  E  V  A  M  V  L  *  N  S  M  T  F  L  C  L  P  P  I  T  L  F  V  L  L  R  N  I  H  G  K  F  T  L  L  T  I  I  P  *  E  K  I  P  S  C  Q  R  L  G  M  I  L  *  S  Y  G  L  L  I  E  M  P  V  *  G  L  L  R  N  M  L  I  V  S  I  P  L  L  G  I  Q  D  M  L  I  S  L  H  L  L  L  G  I  V  L  L  A  S  G  M  S  A  N  Q  :  V  L  Q  *  F  C  L  H  T  S  L  K  S  S  H  V  I  G  V  S  M  T  I  V  S  L  Q  L  H  P  L  I  S  Q  S  R  F  G  M  L  G  I  I  E  C  Q  Y  Q  C  L  M  G  M  D  M  Q  *  G  K  *  G  F  H  H  I  E  R  V  Q  W  F  L  V  H  M  T  *  Q  F  A  C  G  I  T  W  W  K  M  H  L  L  G  G  M  I  I  T  Q  S  L  L  *  E  L  I  *  A  F  S  L  K  V  Y  W  L  V  Q  D  G  M  N  L  F  M  F  G  N  M  E  W  T  L  E  L  L  D  K  G  K  S  N  I  F  F  F  L  L  L  C  T  *  C  *  E  R  K  *  I  N  C  L  C  L  E  T  W  N  G  N  Y  L  *  C  L  L  L  K  L  *  N  N  L  K  F  H  C  I  *  D  F  G  K  T  L  V  N  D  I  Y  T  K  Q  L  *  C  F  R  K  Y  A  L  Y  V  N  H  F  G  F  C  M  L  F  W  N  V  N  S  L  N  F  F  N  I  I  Q  N  F  T  R  G  S  G  S  G  K  G  *  K  E  G  T  Y  F  *  S  G  F  S  V  F  C  L  *  K  I  T  N  G  D  P  I  R  E  L  T  E  Q  V  L  H  F  K  Y  V  Q  C  H  F  H  S  K  A  C  I  H  T  S  V  E  D  S  S  L  I  K  H  L  E  S  S  Y  K  R  A  Y  R  T   </second_frame>
            <third_frame>   Q  I  Q  D  D  F  G  G  K  P  L  L  H  R  E  S  K  S  P  A  T  I  K  S  A  P  T  A  V  R  R  P  P  T  A  *  D  A  G  I  *  N  S  I  *  R  L  L  R  K  I  Q  S  L  L  R  K  Q  T  S  C  G  H  C  A  E  F  R  H  P  W  *  R  E  S  S  H  S  S  A  Q  S  K  R  T  G  I  G  T  C  G  F  *  H  S  *  W  S  L  R  R  L  L  V  G  S  S  R  F  T  C  Y  C  W  K  W  R  W  F  C  E  T  L  *  P  F  F  A  S  H  Q  *  P  Y  S  F  F  *  G  T  Y  T  G  S  S  L  C  *  L  *  Y  R  E  K  R  F  L  L  V  S  V  L  G  *  Y  C  E  A  M  D  C  *  *  K  C  Q  C  K  D  F  *  G  T  C  L  L  C  L  F  R  C  L  E  S  K  T  C  *  Y  L  C  I  C  F  W  G  L  Y  Y  S  H  L  G  C  P  R  T  R :   F  Y  N  D  S  A  C  T  R  V  *  N  P  H  M  *  L  E  *  V  *  R  L  Y  H  C  N  C  I  R  *  *  V  N  Q  G  L  G  C  *  E  L  *  S  A  N  I  S  A  *  W  A  W  I  C  S  E  E  S  E  V  F  T  T  *  S  E  C  N  G  F  L  F  I  *  H  D  S  L  H  V  G  L  H  G  G  R  C  T  Y  W  E  V  *  S  S  H  R  V  C  C  R  S  *  Y  E  R  S  R  *  R  S  I  G  *  Y  R  M  G  *  T  C  L  C  L  A  T  W  N  G  P  *  S  F  L  T  K  G  S  Q  T  F  S  S  F  Y  F  Y  V  L  N  A  K  R  G  S  E  *  T  A  Y  V  W  K  H  G  M  G  T  I  Y  D  V  C  C  *  S  C  K  I  I  *  S  F  I  V  F  K  I  L  V  K  P  W  *  M  T  F  T  P  N  S  F  D  V  S  E  N  M  R  Y  M  S  I  T  L  G  S  V  C  F  F  G  M  S  I  P  *  I  S  L  T  L  F  R  I  L  R  G  A  V  G  R  V  R  V  E  K  K  A  H  T  S  D  R  G  L  A  C  S  V  Y  K  K  *  Q  T  E  I  L  *  E  S  L  Q  N  R  Y  F  I  S  N  M  C  N  A  I  F  T  Q  R  P  A  F  I  L  Q  W  K  I  R  P  *  S  S  T  *  S  H  P  I  R  E  R  T  E  Q  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0077H15.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="76868" stop="76214"/>
                    <exon start="76074" stop="75668"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>1059</number_coding_nucleotides>
                  <number_encoded_amino_acids>353</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LKYRTILGENPFYIGKVNHRQQSNQRRPLSAVRRPPKMPVFKTPFNGYSVKFSPFYENKLAVATAQNFGILGNGRVHILQLNPNGPVSELAAFDTADGVYDVCWSEAHDSLVIAGSGDGSVKLYDLSLPPTNNPIRSFKEHTREVHSVDYNTVRKDSFLSASWDDTVKLWTVDRNASVRTFKEHAYCVYSAAWNPRHADIFASASGDCTTRIWDVREPGSTMILPAHEFEILTCDWSKYDDCIIATASVDKSIKVWDVRNYRVPISVLNGHGYAVRKVRFSPHRASAMVSCSYDMTVCMWDYMVEDALIGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQHGMDPRAS*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="+" PGL_start="80827" PGL_stop="81036"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="80827" e_stop="81036"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.929"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.929">
            <gDNA_exon_boundary e_start="80827" e_stop="81036" e_length="210"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80827" stop="81036"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E283948" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>AAAAACCATTTTGAGAGCAAAGTGAGGTATTCCATAGACTGTACAAGAAAAATAGTCTTTGAAGAAAAATAGAGTGTCGGGGCGATATTTTAGTAAGGTGGAAACCAAAATAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTATTGTATTCGTGACTACACAGTGTAAAACTCCTTACTATAGTGATATCAGTTGCTCCTCT</gDNA_template>
            <first_frame> K  N  H  F  E  S  K  V  R  Y  S  I  D  C  T  R  K  I  V  F  E  E  K  *  S  V  G  A  I  F  *  *  G  G  N  Q  N  S  V  V  P  F  E  C  V  V  V  T  L  S  I  V  F  V  T  T  Q  C  K  T  P  Y  Y  S  D  I  S  C  S  S </first_frame>
            <second_frame>  K  T  I  L  R  A  K  *  G  I  P  *  T  V  Q  E  K  *  S  L  K  K  N  R  V  S  G  R  Y  F  S  K  V  E  T  K  I  V  L  F  L  L  S  V  *  *  S  L  *  V  L  Y  S  *  L  H  S  V  K  L  L  T  I  V  I  S  V  A  P   </second_frame>
            <third_frame>   K  P  F  *  E  Q  S  E  V  F  H  R  L  Y  K  K  N  S  L  *  R  K  I  E  C  R  G  D  I  L  V  R  W  K  P  K  *  C  C  S  F  *  V  C  S  S  H  F  E  Y  C  I  R  D  Y  T  V  *  N  S  L  L  *  *  Y  Q  L  L  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0077H15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="94963" PGL_stop="88501"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="94963" e_stop="94914"/>
            <exon e_start="90206" e_stop="90162"/>
            <exon e_start="90077" e_stop="90003"/>
            <exon e_start="88992" e_stop="88501"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.988" acc_prob="0.999" e_score="0.960"/>
          <exon-intron don_prob="0.987" acc_prob="0.975" e_score="1.000"/>
          <exon-intron don_prob="0.996" acc_prob="0.936" e_score="1.000"/>
          <exon-only e_score="0.986"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.960">
            <gDNA_exon_boundary e_start="94963" e_stop="94914" e_length="50"/>
          </exon>
          <intron i_serial="1" don_prob="0.988" acc_prob="0.999">
            <gDNA_intron_boundary i_start="94913" i_stop="90207" i_length="4707"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="90206" e_stop="90162" e_length="45"/>
          </exon>
          <intron i_serial="2" don_prob="0.987" acc_prob="0.975">
            <gDNA_intron_boundary i_start="90161" i_stop="90078" i_length="84"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="90077" e_stop="90003" e_length="75"/>
          </exon>
          <intron i_serial="3" don_prob="0.996" acc_prob="0.936">
            <gDNA_intron_boundary i_start="90002" i_stop="88993" i_length="1010"/>
          </intron>
          <exon e_serial="4" e_score="0.986">
            <gDNA_exon_boundary e_start="88992" e_stop="88501" e_length="492"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="94963" stop="94914"/>
              <exon start="90206" stop="90162"/>
              <exon start="90077" stop="90003"/>
              <exon start="88992" stop="88502"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E370134" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="90066" stop="90003"/>
              <exon start="88992" stop="88501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392272" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="88883" stop="88501"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E392529" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAATTTGTTAGAATGTGTTGAACAAGTTGAGGAGGAGCGAATTAGGAAG : GCATTGCTGTCCGATGCAGAGCTGGCTAGACTTAGCAAGGATCTA : GCAATACTACGATGTGATCTTCCATCCTACATGGTTCCTTTTGTCCCTGATGACTTGATATTTGAGAAACCAGAG : GATGGTGGGGAGAAATTTACTAGCCTCTTAACAGCTATTAGTGCTTATGCGGAAGGATTTTCCGCAGATAACATAATTAGAAGAGCTTTGTATTTGTGGAAGAAACTTGAGAAACAAACTGTAGATACCATTCACCAAAAAGTTGTATCAGCTGATAAGAGACTCGAGTCTTGAAAACTGATGATGATGTAAAGAGTTCCCGATTCTGTCTATAGCTTTTTTTGGCTGTACTTGTATTATAGTGAGATATTAAAGAGTAGTTTAGCAGTGTAATTGCTTCTTTTTTTTTTGGAAATCTCTGGGAAACACACAACCTCTACCGTTCAGGTGAGCATTCTGTAGTATGCACTTTGTGGTAAAATGCTCACTAGGCAAGCTCCATGTAACAAGCTCATCTCTTCTTCAAACTCTCTATGTAACTCCTAAAATATGAAGGTTGTAGATGGATTACATGTAAATGATTCCTTCGTTTGTCAACTAGAATAGCTGCAA</gDNA_template>
            <first_frame> K  I  C  *  N  V  L  N  K  L  R  R  S  E  L  G  R :   H  C  C  P  M  Q  S  W  L  D  L  A  R  I  * :   Q  Y  Y  D  V  I  F  H  P  T  W  F  L  L  S  L  M  T  *  Y  L  R  N  Q  R :   M  V  G  R  N  L  L  A  S  *  Q  L  L  V  L  M  R  K  D  F  P  Q  I  T  *  L  E  E  L  C  I  C  G  R  N  L  R  N  K  L  *  I  P  F  T  K  K  L  Y  Q  L  I  R  D  S  S  L  E  N  *  *  *  C  K  E  F  P  I  L  S  I  A  F  F  G  C  T  C  I  I  V  R  Y  *  R  V  V  *  Q  C  N  C  F  F  F  F  W  K  S  L  G  N  T  Q  P  L  P  F  R  *  A  F  C  S  M  H  F  V  V  K  C  S  L  G  K  L  H  V  T  S  S  S  L  L  Q  T  L  Y  V  T  P  K  I  *  R  L  *  M  D  Y  M  *  M  I  P  S  F  V  N  *  N  S  C   </first_frame>
            <second_frame>  K  F  V  R  M  C  *  T  S  *  G  G  A  N  *  E   : G  I  A  V  R  C  R  A  G  *  T  *  Q  G  S   : S  N  T  T  M  *  S  S  I  L  H  G  S  F  C  P  *  *  L  D  I  *  E  T  R   : G  W  W  G  E  I  Y  *  P  L  N  S  Y  *  C  L  C  G  R  I  F  R  R  *  H  N  *  K  S  F  V  F  V  E  E  T  *  E  T  N  C  R  Y  H  S  P  K  S  C  I  S  *  *  E  T  R  V  L  K  T  D  D  D  V  K  S  S  R  F  C  L  *  L  F  L  A  V  L  V  L  *  *  D  I  K  E  *  F  S  S  V  I  A  S  F  F  F  G  N  L  W  E  T  H  N  L  Y  R  S  G  E  H  S  V  V  C  T  L  W  *  N  A  H  *  A  S  S  M  *  Q  A  H  L  F  F  K  L  S  M  *  L  L  K  Y  E  G  C  R  W  I  T  C  K  *  F  L  R  L  S  T  R  I  A  A  </second_frame>
            <third_frame>   N  L  L  E  C  V  E  Q  V  E  E  E  R  I  R  K  :  A  L  L  S  D  A  E  L  A  R  L  S  K  D  L  :  A  I  L  R  C  D  L  P  S  Y  M  V  P  F  V  P  D  D  L  I  F  E  K  P  E  :  D  G  G  E  K  F  T  S  L  L  T  A  I  S  A  Y  A  E  G  F  S  A  D  N  I  I  R  R  A  L  Y  L  W  K  K  L  E  K  Q  T  V  D  T  I  H  Q  K  V  V  S  A  D  K  R  L  E  S  *  K  L  M  M  M  *  R  V  P  D  S  V  Y  S  F  F  W  L  Y  L  Y  Y  S  E  I  L  K  S  S  L  A  V  *  L  L  L  F  F  L  E  I  S  G  K  H  T  T  S  T  V  Q  V  S  I  L  *  Y  A  L  C  G  K  M  L  T  R  Q  A  P  C  N  K  L  I  S  S  S  N  S  L  C  N  S  *  N  M  K  V  V  D  G  L  H  V  N  D  S  F  V  C  Q  L  E  *  L  Q </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0077H15.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="94961" stop="94914"/>
                    <exon start="90206" stop="90162"/>
                    <exon start="90077" stop="90003"/>
                    <exon start="88992" stop="88819"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>339</number_coding_nucleotides>
                  <number_encoded_amino_acids>113</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NLLECVEQVEEERIRKALLSDAELARLSKDLAILRCDLPSYMVPFVPDDLIFEKPEDGGEKFTSLLTAISAYAEGFSADNIIRRALYLWKKLEKQTVDTIHQKVVSADKRLES*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="-" PGL_start="103301" PGL_stop="101876"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="103301" e_stop="103265"/>
            <exon e_start="102443" e_stop="101876"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.000" acc_prob="0.000" e_score="0.946"/>
          <exon-only e_score="0.923"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.946">
            <gDNA_exon_boundary e_start="103301" e_stop="103265" e_length="37"/>
          </exon>
          <intron i_serial="1" don_prob="0.000" acc_prob="0.000">
            <gDNA_intron_boundary i_start="103264" i_stop="102444" i_length="821"/>
          </intron>
          <exon e_serial="2" e_score="0.923">
            <gDNA_exon_boundary e_start="102443" e_stop="101876" e_length="568"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="103301" stop="103265"/>
              <exon start="102443" stop="101876"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252131" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAAGTACGAATAGAAATACCAAACTGATTTTGTATTT : GAACTCATCATATTCTATCTGAGCAATATGAGCATTATTGGATGGTTGATTAGGTTGAGCACCATATGCTACTGATGGAGATGCTTGTTTACTTGCGCGATTTCGAAGGAACTCATTATATTCCTTTAGAACAAGAGGATCATAACTGGGTGGTGGACCATGCTAAATATGACATATGTCACGAGTGTGTCCAGACTTATGACAATGACTACACTTGGATCGAGGTTTCCAAAACGTCTTCCCCCTCGCCGATTCTCCGTAGACTGATATGTACACTTTTCAAAGGTTTGAGATGCGAGAATAGAGGAGTCAACAGTGGGTGATGAAACGATTTTGACTAGGAGTTGCCGCAAGACGAAGGAAGCGAGAGAATAATTCATTGATTGTAGGAACTGTAGGGCTAGCTAAAATCTGATCACAACACAGAATAATTATCAGGAGGAAGTCCAGCAAGAGTAAGAATTAGAAACAATGTTTGTCTATGTTCTTGTTGTTTTTCCACATCCGTAGTTACTGGCATCAACGTGTTGAGTTCCTCTAAGACTGCCTGTACCTGTCCCAAGTAAGT</gDNA_template>
            <first_frame> K  V  R  I  E  I  P  N  *  F  C  I   : *  T  H  H  I  L  S  E  Q  Y  E  H  Y  W  M  V  D  *  V  E  H  H  M  L  L  M  E  M  L  V  Y  L  R  D  F  E  G  T  H  Y  I  P  L  E  Q  E  D  H  N  W  V  V  D  H  A  K  Y  D  I  C  H  E  C  V  Q  T  Y  D  N  D  Y  T  W  I  E  V  S  K  T  S  S  P  S  P  I  L  R  R  L  I  C  T  L  F  K  G  L  R  C  E  N  R  G  V  N  S  G  *  *  N  D  F  D  *  E  L  P  Q  D  E  G  S  E  R  I  I  H  *  L  *  E  L  *  G  *  L  K  S  D  H  N  T  E  *  L  S  G  G  S  P  A  R  V  R  I  R  N  N  V  C  L  C  S  C  C  F  S  T  S  V  V  T  G  I  N  V  L  S  S  S  K  T  A  C  T  C  P  K  *   </first_frame>
            <second_frame>  K  Y  E  *  K  Y  Q  T  D  F  V  F  :  E  L  I  I  F  Y  L  S  N  M  S  I  I  G  W  L  I  R  L  S  T  I  C  Y  *  W  R  C  L  F  T  C  A  I  S  K  E  L  I  I  F  L  *  N  K  R  I  I  T  G  W  W  T  M  L  N  M  T  Y  V  T  S  V  S  R  L  M  T  M  T  T  L  G  S  R  F  P  K  R  L  P  P  R  R  F  S  V  D  *  Y  V  H  F  S  K  V  *  D  A  R  I  E  E  S  T  V  G  D  E  T  I  L  T  R  S  C  R  K  T  K  E  A  R  E  *  F  I  D  C  R  N  C  R  A  S  *  N  L  I  T  T  Q  N  N  Y  Q  E  E  V  Q  Q  E  *  E  L  E  T  M  F  V  Y  V  L  V  V  F  P  H  P  *  L  L  A  S  T  C  *  V  P  L  R  L  P  V  P  V  P  S  K  </second_frame>
            <third_frame>   S  T  N  R  N  T  K  L  I  L  Y  L :   N  S  S  Y  S  I  *  A  I  *  A  L  L  D  G  *  L  G  *  A  P  Y  A  T  D  G  D  A  C  L  L  A  R  F  R  R  N  S  L  Y  S  F  R  T  R  G  S  *  L  G  G  G  P  C  *  I  *  H  M  S  R  V  C  P  D  L  *  Q  *  L  H  L  D  R  G  F  Q  N  V  F  P  L  A  D  S  P  *  T  D  M  Y  T  F  Q  R  F  E  M  R  E  *  R  S  Q  Q  W  V  M  K  R  F  *  L  G  V  A  A  R  R  R  K  R  E  N  N  S  L  I  V  G  T  V  G  L  A  K  I  *  S  Q  H  R  I  I  I  R  R  K  S  S  K  S  K  N  *  K  Q  C  L  S  M  F  L  L  F  F  H  I  R  S  Y  W  H  Q  R  V  E  F  L  *  D  C  L  Y  L  S  Q  V  S </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0077H15.1" strand="-"/>
                <serials PGL_serial="5" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="102390" stop="102121"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>267</number_coding_nucleotides>
                  <number_encoded_amino_acids>89</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VEHHMLLMEMLVYLRDFEGTHYIPLEQEDHNWVVDHAKYDICHECVQTYDNDYTWIEVSKTSSPSPILRRLICTLFKGLRCENRGVNSG*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="6" PGL_strand="+" PGL_start="104144" PGL_stop="104912"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="104144" e_stop="104912"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.927"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.927">
            <gDNA_exon_boundary e_start="104144" e_stop="104912" e_length="769"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104144" stop="104912"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E487611" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="104144" stop="104705"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E427595" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="6" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GTGAAGCACTTTCTCATTCTGGATGGAGGCAAGTTATGGTTGATGAGATGTCTGCTTTACATAAGAGTGGTACTTGGGAGCTTGTCTCCCTTCCTGCAGTTAAATCTACCGTTGGTTGTCGTTGGGTTTATGAAGTCAAAATTGGTCCAGATGGTCAGGTTGATCAACTTAAGGCTCGCCTTGTCGCCAAAGGGTATACTCAGATATTTGGGCTAGATTATAGTGACACTTTTGCTCCTGTGGCTAAAATAGCATTTGTTTGTCTTTTTCTATCTATGGCTACCGTTCGTCATTGGCCTCTATATCAGTTGGACATAAAGAACGTTTTTCTGCATGGTGATCTTGAGAAAGAAGTCTATGGAGCAACCACCTGGTTTTGTTGCTCAGGGGGAGTCTAGTAGCCTTGTTGTCGATTGCGTAGGTCACTCTATGGTCTGAAACAGTCTCCTCGAGCTTGGTTTGGGAAGTTCAGCACAGTAATTCAGGAGTTTGGCATGACTAGTAGTGGAGTTGATCACTCTGTGTTTTATCGACATTCCACACCAGGTCGATGTATCTATTTGGCTGTTTATGTTGATATTGTTATCACCAGTAATGATCAAGATGGTATCACCAATTTAAAGCAACATCTTTTTAAGCACTTTCAAACTAAAGACCTTGGCAGATTGAAGTATTTTCTAGGTATTGAGGTTGCTCAATCTAGATCAGGCATTGTTATCTCTCAACGCAAGTATACCTTAGACATTCTTGAGGAGACAGTAATGATGGG</gDNA_template>
            <first_frame> V  K  H  F  L  I  L  D  G  G  K  L  W  L  M  R  C  L  L  Y  I  R  V  V  L  G  S  L  S  P  F  L  Q  L  N  L  P  L  V  V  V  G  F  M  K  S  K  L  V  Q  M  V  R  L  I  N  L  R  L  A  L  S  P  K  G  I  L  R  Y  L  G  *  I  I  V  T  L  L  L  L  W  L  K  *  H  L  F  V  F  F  Y  L  W  L  P  F  V  I  G  L  Y  I  S  W  T  *  R  T  F  F  C  M  V  I  L  R  K  K  S  M  E  Q  P  P  G  F  V  A  Q  G  E  S  S  S  L  V  V  D  C  V  G  H  S  M  V  *  N  S  L  L  E  L  G  L  G  S  S  A  Q  *  F  R  S  L  A  *  L  V  V  E  L  I  T  L  C  F  I  D  I  P  H  Q  V  D  V  S  I  W  L  F  M  L  I  L  L  S  P  V  M  I  K  M  V  S  P  I  *  S  N  I  F  L  S  T  F  K  L  K  T  L  A  D  *  S  I  F  *  V  L  R  L  L  N  L  D  Q  A  L  L  S  L  N  A  S  I  P  *  T  F  L  R  R  Q  *  *  W  </first_frame>
            <second_frame>  *  S  T  F  S  F  W  M  E  A  S  Y  G  *  *  D  V  C  F  T  *  E  W  Y  L  G  A  C  L  P  S  C  S  *  I  Y  R  W  L  S  L  G  L  *  S  Q  N  W  S  R  W  S  G  *  S  T  *  G  S  P  C  R  Q  R  V  Y  S  D  I  W  A  R  L  *  *  H  F  C  S  C  G  *  N  S  I  C  L  S  F  S  I  Y  G  Y  R  S  S  L  A  S  I  S  V  G  H  K  E  R  F  S  A  W  *  S  *  E  R  S  L  W  S  N  H  L  V  L  L  L  R  G  S  L  V  A  L  L  S  I  A  *  V  T  L  W  S  E  T  V  S  S  S  L  V  W  E  V  Q  H  S  N  S  G  V  W  H  D  *  *  W  S  *  S  L  C  V  L  S  T  F  H  T  R  S  M  Y  L  F  G  C  L  C  *  Y  C  Y  H  Q  *  *  S  R  W  Y  H  Q  F  K  A  T  S  F  *  A  L  S  N  *  R  P  W  Q  I  E  V  F  S  R  Y  *  G  C  S  I  *  I  R  H  C  Y  L  S  T  Q  V  Y  L  R  H  S  *  G  D  S  N  D  G </second_frame>
            <third_frame>   E  A  L  S  H  S  G  W  R  Q  V  M  V  D  E  M  S  A  L  H  K  S  G  T  W  E  L  V  S  L  P  A  V  K  S  T  V  G  C  R  W  V  Y  E  V  K  I  G  P  D  G  Q  V  D  Q  L  K  A  R  L  V  A  K  G  Y  T  Q  I  F  G  L  D  Y  S  D  T  F  A  P  V  A  K  I  A  F  V  C  L  F  L  S  M  A  T  V  R  H  W  P  L  Y  Q  L  D  I  K  N  V  F  L  H  G  D  L  E  K  E  V  Y  G  A  T  T  W  F  C  C  S  G  G  V  *  *  P  C  C  R  L  R  R  S  L  Y  G  L  K  Q  S  P  R  A  W  F  G  K  F  S  T  V  I  Q  E  F  G  M  T  S  S  G  V  D  H  S  V  F  Y  R  H  S  T  P  G  R  C  I  Y  L  A  V  Y  V  D  I  V  I  T  S  N  D  Q  D  G  I  T  N  L  K  Q  H  L  F  K  H  F  Q  T  K  D  L  G  R  L  K  Y  F  L  G  I  E  V  A  Q  S  R  S  G  I  V  I  S  Q  R  K  Y  T  L  D  I  L  E  E  T  V  M  M   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0077H15.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104146" stop="104541"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>393</number_coding_nucleotides>
                  <number_encoded_amino_acids>131</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EALSHSGWRQVMVDEMSALHKSGTWELVSLPAVKSTVGCRWVYEVKIGPDGQVDQLKARLVAKGYTQIFGLDYSDTFAPVAKIAFVCLFLSMATVRHWPLYQLDIKNVFLHGDLEKEVYGATTWFCCSGGV*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0077H15.1" strand="+"/>
                <serials PGL_serial="6" AGS_serial="1" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="104545" stop="104910"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>366</number_coding_nucleotides>
                  <number_encoded_amino_acids>122</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>PCCRLRRSLYGLKQSPRAWFGKFSTVIQEFGMTSSGVDHSVFYRHSTPGRCIYLAVYVDIVITSNDQDGITNLKQHLFKHFQTKDLGRLKYFLGIEVAQSRSGIVISQRKYTLDILEETVMM</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="7" PGL_strand="-" PGL_start="112290" PGL_stop="111620"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112290" e_stop="111620"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.915"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.915">
            <gDNA_exon_boundary e_start="112290" e_stop="111620" e_length="671"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112290" stop="111620"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E559246" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="7" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>CAACACTTCATTAGATTGTTGGACTTCTCTAATAAAATGAAACTTGATCTTGATATGTTTAGTTCGACCATGAAAAACTGGATTTTTTTGAGATTGAAACTGCTGAACTGTTGTCACACATGATCTTGGTAGCTTCTGTTTGTTCATGGCCTAAGTCCTTCATCATCTTCCTTAGCCAGATAACTTGATTCATAAGATGCAACAGCTATGTACTCAGCTTCTGCTGTTGATTGAGTTGTAGTTTCTTGTTTTCTAGAGCTCCAACTAAAACAACTTGTCCCCAAACAGGAAAGATATCCAGATGTGCTTCTGGAATCATCAACTCCACCACCCCAATCACTATCAGAGTACCCGATCAGGTTCATAGTTACTTCAGCAGATGTTGGGAAAAAAATTCCAAACTTGCTAGTTCCTTTAATATACCTTAACACTCTTTTAGCAGCTGTGAGGTGTGTGTCTCTAGGCGAATGCATGAACCTAGAGAGCAAACTAACAACAAATAGAATGTCAGGCCTGCTTGCGGTTAGATATAGAAGACTGCCAATTAAGCTTCTATACATACTATCATCCACTTTTTCGGAATCCTCATCCTTGCCAAGCTTCACACAAGTAGATATTGGAGTACTCACAGGTTTGCAGTCTTGCATTTTGAACCTGCTTAGAATATCCGA</gDNA_template>
            <first_frame> Q  H  F  I  R  L  L  D  F  S  N  K  M  K  L  D  L  D  M  F  S  S  T  M  K  N  W  I  F  L  R  L  K  L  L  N  C  C  H  T  *  S  W  *  L  L  F  V  H  G  L  S  P  S  S  S  S  L  A  R  *  L  D  S  *  D  A  T  A  M  Y  S  A  S  A  V  D  *  V  V  V  S  C  F  L  E  L  Q  L  K  Q  L  V  P  K  Q  E  R  Y  P  D  V  L  L  E  S  S  T  P  P  P  Q  S  L  S  E  Y  P  I  R  F  I  V  T  S  A  D  V  G  K  K  I  P  N  L  L  V  P  L  I  Y  L  N  T  L  L  A  A  V  R  C  V  S  L  G  E  C  M  N  L  E  S  K  L  T  T  N  R  M  S  G  L  L  A  V  R  Y  R  R  L  P  I  K  L  L  Y  I  L  S  S  T  F  S  E  S  S  S  L  P  S  F  T  Q  V  D  I  G  V  L  T  G  L  Q  S  C  I  L  N  L  L  R  I  S   </first_frame>
            <second_frame>  N  T  S  L  D  C  W  T  S  L  I  K  *  N  L  I  L  I  C  L  V  R  P  *  K  T  G  F  F  *  D  *  N  C  *  T  V  V  T  H  D  L  G  S  F  C  L  F  M  A  *  V  L  H  H  L  P  *  P  D  N  L  I  H  K  M  Q  Q  L  C  T  Q  L  L  L  L  I  E  L  *  F  L  V  F  *  S  S  N  *  N  N  L  S  P  N  R  K  D  I  Q  M  C  F  W  N  H  Q  L  H  H  P  N  H  Y  Q  S  T  R  S  G  S  *  L  L  Q  Q  M  L  G  K  K  F  Q  T  C  *  F  L  *  Y  T  L  T  L  F  *  Q  L  *  G  V  C  L  *  A  N  A  *  T  *  R  A  N  *  Q  Q  I  E  C  Q  A  C  L  R  L  D  I  E  D  C  Q  L  S  F  Y  T  Y  Y  H  P  L  F  R  N  P  H  P  C  Q  A  S  H  K  *  I  L  E  Y  S  Q  V  C  S  L  A  F  *  T  C  L  E  Y  P  </second_frame>
            <third_frame>   T  L  H  *  I  V  G  L  L  *  *  N  E  T  *  S  *  Y  V  *  F  D  H  E  K  L  D  F  F  E  I  E  T  A  E  L  L  S  H  M  I  L  V  A  S  V  C  S  W  P  K  S  F  I  I  F  L  S  Q  I  T  *  F  I  R  C  N  S  Y  V  L  S  F  C  C  *  L  S  C  S  F  L  F  S  R  A  P  T  K  T  T  C  P  Q  T  G  K  I  S  R  C  A  S  G  I  I  N  S  T  T  P  I  T  I  R  V  P  D  Q  V  H  S  Y  F  S  R  C  W  E  K  N  S  K  L  A  S  S  F  N  I  P  *  H  S  F  S  S  C  E  V  C  V  S  R  R  M  H  E  P  R  E  Q  T  N  N  K  *  N  V  R  P  A  C  G  *  I  *  K  T  A  N  *  A  S  I  H  T  I  I  H  F  F  G  I  L  I  L  A  K  L  H  T  S  R  Y  W  S  T  H  R  F  A  V  L  H  F  E  P  A  *  N  I  R </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0077H15.1" strand="-"/>
                <serials PGL_serial="7" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="112056" stop="111622"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>435</number_coding_nucleotides>
                  <number_encoded_amino_acids>145</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>VVVSCFLELQLKQLVPKQERYPDVLLESSTPPPQSLSEYPIRFIVTSADVGKKIPNLLVPLIYLNTLLAAVRCVSLGECMNLESKLTTNRMSGLLAVRYRRLPIKLLYILSSTFSESSSLPSFTQVDIGVLTGLQSCILNLLRIS</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="8" PGL_strand="+" PGL_start="112254" PGL_stop="112531"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="112254" e_stop="112531"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.968"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.968">
            <gDNA_exon_boundary e_start="112254" e_stop="112531" e_length="278"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="112254" stop="112531"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E249673" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="8" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>TTTTATTAGAGAAGTCCAACAATCTAATGAAGTGTTGCTTGTTCATTGTACATCTGAGAACCAGCTAGCTGACATTTTCACCAAGTCATTGCCAAAGGAAAGGTTTGAAGATCTGAGGCAAAGAATTAGTGTTTGCCACAAAAATGCCAAGGAGGAGTGTTAGACAATTCACATTTTTTTAGCTTATTATTATTTTTACTGTTTTTTACTTATTTCAATTTAGTGCTTCCTATTTTCTAGCTAGACTTAGTCAACTTTAGTTGCTCAACTTTCTTAAG</gDNA_template>
            <first_frame> F  Y  *  R  S  P  T  I  *  *  S  V  A  C  S  L  Y  I  *  E  P  A  S  *  H  F  H  Q  V  I  A  K  G  K  V  *  R  S  E  A  K  N  *  C  L  P  Q  K  C  Q  G  G  V  L  D  N  S  H  F  F  S  L  L  L  F  L  L  F  F  T  Y  F  N  L  V  L  P  I  F  *  L  D  L  V  N  F  S  C  S  T  F  L   </first_frame>
            <second_frame>  F  I  R  E  V  Q  Q  S  N  E  V  L  L  V  H  C  T  S  E  N  Q  L  A  D  I  F  T  K  S  L  P  K  E  R  F  E  D  L  R  Q  R  I  S  V  C  H  K  N  A  K  E  E  C  *  T  I  H  I  F  L  A  Y  Y  Y  F  Y  C  F  L  L  I  S  I  *  C  F  L  F  S  S  *  T  *  S  T  L  V  A  Q  L  S  *  </second_frame>
            <third_frame>   L  L  E  K  S  N  N  L  M  K  C  C  L  F  I  V  H  L  R  T  S  *  L  T  F  S  P  S  H  C  Q  R  K  G  L  K  I  *  G  K  E  L  V  F  A  T  K  M  P  R  R  S  V  R  Q  F  T  F  F  *  L  I  I  I  F  T  V  F  Y  L  F  Q  F  S  A  S  Y  F  L  A  R  L  S  Q  L  *  L  L  N  F  L  K </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0077H15.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 241 chains have been computed
$ 
$ memory statistics:
$ 89440 bytes spliced alignments in total
$ 42 spliced alignments have been stored
$ 2129 bytes was the average size of a spliced alignment
$ 14112 bytes predicted gene locations in total
$ 8 predicted gene locations have been stored
$ 1764 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 310 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 05:32:29
-->
