<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 05:14:41"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/GenomeThreader_SGN_E_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E208112" ref_strand="+" ref_description="SGN-E208112 [cLEC-34-F8]">
      <seq>ttaaacttaagtagcggttttgtgtcaaacatggcaaccaagggaaataaaatttcaattttggcatttgaagttgcaaataccattgtcaaggctgccaatcttattcattctctttcagaagaaaatgtgaaacatttgaaggaggtggtgcttctttcagaaggtgtgcagctcctgataacaaaggatatggatgaactcttgagaattgctgcagcagacaagagggatgaactgaaaatattctccggtgaagtggttcgttttggaaatcgctgtaaagatcctcaatggcacaacttggaacgttactttgaaaagctggaatctgaactgacacctcatgagcacttgaaagaagaagcagaggctctaatggtgcagttgatgatctcggttcagtatacagctgaactgtaccatgaattccatgctttggacagatttgagcaagattatcgacgtaaagttcaagaagaggatacttcaagtgctactcagagaggtattccataacgacagttatgttttgttatttgtgattcttttaagcagattgaagctcaaatttcccgtagatgaaatttgaacttaagttgctccaatgtgttcatcatattatattgtttatgaacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0080C09.1" temp_strand="-" temp_description="C00HBa0080C09.1  CU928194.8 htgs_phase:3 submitted_to_sgn_as:C00HBa0080C09 sequenced_by:sanger upload_account_name:uk">
        <position start="28486" stop="25039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28186" g_stop="27957" g_length="230"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="230" r_length="230" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27956" i_stop="27866" i_length="91">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27865" g_stop="27773" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="231" r_stop="323" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27772" i_stop="27677" i_length="96">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27676" g_stop="27586" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="324" r_stop="414" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27585" i_stop="25567" i_length="2019">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25566" g_stop="25339" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="642" r_length="228" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0080C09.1" gen_strand="-" ref_id="SGN-E208112" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>642</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0080C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E208112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28186" e_stop="27957"/>
          <exon e_start="27865" e_stop="27773"/>
          <exon e_start="27676" e_stop="27586"/>
          <exon e_start="25566" e_stop="25339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTAAACTTAAGTAGCGGTTTTGTGTCAAACATGGCAACCAAGGGAAATAAAATTTCAATTTTGGCATTTGAAGTTGCAAATACCATTGTCAAGGCTGCCAATCTTATTCATTCTCTTTCAGAAGAAAATGTGAAACATTTGAAGGAGGTGGTGCTTCTTTCAGAAGGTGTGCAGCTCCTGATAACAAAGGATATGGATGAACTCTTGAGAATTGCTGCAGCAGACAAGAGGTGCTAAGATTCTGAGATAGCTTATTGTCGTATAAGTTGTTACTTTTAAGTTTTGTCAGCCAGAGTGAACTTCTATTCTGTAATATGGCAGGGATGAACTGAAAATATTCTCCGGTGAAGTGGTTCGTTTTGGAAATCGCTGTAAAGATCCTCAATGGCACAACTTGGAACGTTACTTTGAAAAGTAACTGTTATAAGCTTTTATCTGTTATTTCTTGCTTGTCATCAGTACACCTCAGTGCGTGATTATGTCATTTATAATACATTTCATTATATTTAGGCTGGAATCTGAACTGACACCTCATGAGCACTTGAAAGAAGAAGCAGAGGCTCTAATGGTGCAGTTGATGATCTCGGTTCAGTATACAGCTGTAAGTTTTATCTCATTATTCATTCATCTTTTGATCTCCCATTGCTGTGTTTATTCCGTTATCTTATCATTGTTTGATCCTTTAGTTTGGTTTCAAAAATTAGTGGAGAAGAAATTAGGATCTTGTGTTGTCCATGATTGAAGAGGTCATGCAAAATTAGGACTGTTAGAAAAGCACACTAGTTATTGATGCTCTGTCAAAGTAGATTACTGTGACTACGAACCCAACTAAATGTAACTAGCACAGTCACTGCTGTGTCATCGGCTGTTCTCTGAAAATCTTAAGAAGACCGTGTGAAATCATAGAAGGTAATTTATCTTGGTGGCCTACAACGTGGATTCACAGTATCTTATTATCACATTCATAGTAATTAGTGGGAAATATTGTCTCTCGCAAAGCAAGGAGAAAATATTTGCCGCCATGAAGGTGATTTCATTTGCGCTTCTCTTTTGGGAGATGGAAGAACATGAGAGGCGCATGACTTCCAGCCAAATCTAATTGCTCACTTTTGGAGGTGGATATCCTTAATGCTGATGAATATAGTTTACCAATTTCAAAAAAAAAAAAAAACCATTTGAATCAATTCATGTTAATTTTATTTCGACTCTGTATTGCTTGAAAAGTTGATCACGAAGTGGTGCTTTGGCTCGAAAACAAATTGAAAATTGCAATACCTTCTTGATGCATTGTTAATGGATAACTTGCTTCATAAGGAATGACTATATCATCAACATACACAAGCAGATAGATAAGAATATCATGTATAGAATGTGGAGAGAAGACATAATGATCTGACTTGGCCATTCTATCCCAACTCCTGGACTACTTGGCTGAAGCGTTTAAAGCCCGAGAGAACCCATAAAGGAACCATCCAAATAGACATATTAGATTGGATTATCCCCCCTTTACTTATACATAGGACCCGATTAGCCTTTTCGATTGTTGTTTAGAGACTAAAGACCCGTCTAGTCCCAAAAGCTGACGAAACAGGAGCCCATTCTTACTTTGATTGATTTAAACACATTATTTCTAGTTACCCTTCCCCCTTCCAAACAACAAAACCAGGAGGTTGGTCCATATAACCTTCTTTTTTCCTGATTTGGCGTTGTTGCTGCCATATCTGAGCTCCATTCATGATAGATTTAGGATCACTCTCGTTCCTTCACCCTTGCATGTGGTTTAGTGATACACAGTTTTTGGAATAAAGTTCTTTCCATTCTTCCCAGCAGTAATGTTCCCTACTGCACCTGAAGGCTATTGTCCTAGATAGGAATTTGGAAAGCCATAAAGGATCTCCCGGGTTCAAAATCTTCTGGTCATTTGGAGTGTACATTCCCTAGCAATTTACTATATATTGATGCAAATATTGATCCTGCTTGACGATCAAAATTGCCTAAGTCTCTTGCCATGGTATTCTCCATATCAGGGGATAATGATGGCAAGCTCATTACAGCTTTGTAGGATCTTAAAATTTTTCCCTGACTACTGATAGACATCATAATACTCTAGCAAACAGCATTAAAGTTCTCTTACCTTCAAGGTCGCATCAGCATTAAAGTTCTCTTACTTTCAAGGTTGCATCACATCATCCGTATTTGTTTTATTAAAAATCTGGAATGAGATTTATGATGAATTGCTTCATTTGGAGCAATGAACTTTGCATTTAGTTTACTATAACTGAAATCTTTACAACGAGAATTGCACTTTGGATGCCTAGGAAGAAAAGATCCCTCGGAAATATCTTGTGTTTGCATTTGTATGTTTGGTAAGAATTCAAGCCTAACATTTAAGAATTTTTTAGAGCCATACTTGTGGGAGGTTGGTTAGTATGGATTCTTTATAGACGACCCAATATCAGTACTATCCTCACTAAGAGCTCTGTGGTTATCACAAAGGAACAACTGGAATTTGCTTATTAGTTCACTTTCTGTAATTGAGGACATCAACCTGCATTCTGCTTTTCCCTAAAAATTTATCTGGCTCAGGTTCTAGAAAGGATAATTAGTCTGCGTTTTGCAGGAACTGTACCATGAATTCCATGCTTTGGACAGATTTGAGCAAGATTATCGACGTAAAGTTCAAGAAGAGGATACTTCAAGTGCTACTCAGAGAGGTATTCCATAACGACAGTTATGTTTTGTTATTTGTGATTCTTTTAAGCAGATTGAAGCTCAAATTTCCCGTAGATGAAATTTGAACTTAAGTTGCTCCAATGTGTTCATCATATTATATTGTTTATGAACATGA</genome_strand>
        <mrna_strand>TTAAACTTAAGTAGCGGTTTTGTGTCAAACATGGCAACCAAGGGAAATAAAATTTCAATTTTGGCATTTGAAGTTGCAAATACCATTGTCAAGGCTGCCAATCTTATTCATTCTCTTTCAGAAGAAAATGTGAAACATTTGAAGGAGGTGGTGCTTCTTTCAGAAGGTGTGCAGCTCCTGATAACAAAGGATATGGATGAACTCTTGAGAATTGCTGCAGCAGACAAGAG...........................................................................................GGATGAACTGAAAATATTCTCCGGTGAAGTGGTTCGTTTTGGAAATCGCTGTAAAGATCCTCAATGGCACAACTTGGAACGTTACTTTGAAAA................................................................................................GCTGGAATCTGAACTGACACCTCATGAGCACTTGAAAGAAGAAGCAGAGGCTCTAATGGTGCAGTTGATGATCTCGGTTCAGTATACAGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGTACCATGAATTCCATGCTTTGGACAGATTTGAGCAAGATTATCGACGTAAAGTTCAAGAAGAGGATACTTCAAGTGCTACTCAGAGAGGTATTCCATAACGACAGTTATGTTTTGTTATTTGTGATTCTTTTAAGCAGATTGAAGCTCAAATTTCCCGTAGATGAAATTTGAACTTAAGTTGCTCCAATGTGTTCATCATATTATATTGTTTATGAACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E374450" ref_strand="+" ref_description="SGN-E374450 [TUS-38-J8](-)">
      <seq>tgcagtgctggtatcggtaggactggaacatattgcacaatccataataccatccagagaatactgggtggagatatgtctgctcttgacatcgttaatacagtagccatttttaggtctcagcgaattgggatggtccagaccatggatcaataccttttctgctatgatgccattattgatgaactggaagacctaatttcagatgacaatggagagaagaatctgtagtgtagcgatgagttaacaagatcttggatttttgctcacaatgggatatgaaacagtagttatgctgaagacacaaatcagttggctttactacagttgcttcgtctcgctctctttgcttgggatcccaagttgttcaaaagatacctgttgctatttccatcgacctgagaactcatttggatccactatttgaaatgcaaagtggaatgccgatgtaagatgtatcctttggctgactgaatataaatgaagttacaatgtttgcagatccagaaaattatatttctggtcattatggttttgccgagtaaacacgctcattcaacactaaactaagtgaaactgctcacttaatgattatttagcattgatgtggatttgaaatggtgtatgctgaaatatttaagttgaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0080C09.1" temp_strand="-" temp_description="C00HBa0080C09.1  CU928194.8 htgs_phase:3 submitted_to_sgn_as:C00HBa0080C09 sequenced_by:sanger upload_account_name:uk">
        <position start="74407" stop="71744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74107" g_stop="73961" g_length="147"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="147" r_length="147" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73960" i_stop="72691" i_length="1270">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72690" g_stop="72605" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="148" r_stop="233" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72604" i_stop="72457" i_length="148">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72456" g_stop="72045" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="645" r_length="412" r_score="0.993"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="646" polyA_stop="658"/>
      <MATCH_line gen_id="C00HBa0080C09.1" gen_strand="-" ref_id="SGN-E374450" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>645</cumulative_length_of_scored_exons>
        <coverage percentage="0.980" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0080C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374450" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74107" e_stop="73961"/>
          <exon e_start="72690" e_stop="72605"/>
          <exon e_start="72456" e_stop="72045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TACAGTGCTGGTATCGGTAGGACTGGAACATATTGCACAATCCATAATACCATCCAGAGAATACTGGGTGGAGATATGTCTGCTCTTGACATCGTTAATACAGTAGCCATTTTTAGGTCTCAGCGAATTGGGATGGTCCAGACCATGGTACAGCTCCTCCTTTTTTCTTTTTGTCCTTTTCAATTTTCCAATATGCTTCCTTTTTGGCTTTATTTTAACTACCTACTGCTGATTATAAGACTACCGGAGGAGCAATAGTTTCTGATTTTTAAAGTATAAACCACATCCAGCTTTTTTCTGAAAACTTTAGCTGATTGCTGGTATAGAGCATAGTGAGTTCATGTTAGTTAAACATATTGAAAGGGCTAAGCTATCGTTTTAAATCCTTCCGTATACCCTTAGAGTATCAGTGATGCTAAAGGCTTGCTTGAGGTGTGTTTTAAGTCCTGGAACTAGGTGAAGCTCAAGTTATATGCATTACGTCGTTTAGATGGAGCTTTGGTGCAATTACCAAGGGACCAAGACATGTGCCTGTCTTTGAGGGGTAGCACCATACAATTAAAAAGATGTTGGCAAAGTTAATCATGCATTAGTGATTAGGAATAAGACTAAAAGAATTAGTATAAGAAAATTCTTTGTTAGAAACTTAAAATGTATTTTACATTTAAATCGGAAATTCAAATTAGCTGCGGGACTTGATTGACATGATTTCTTCTGGGACTTGATTGACATAATTATAGTTCTGTGTTTTCAAGGTTTTTGTTCAAATAATTATTGCTTGTATTTTAGTTTTTTTTTCCCCATGAATTGCATATGTTTTTTTAAAAAACTTTTATTGATTTTCTTTGTTAAGCCACTTAAAGCCCCAACACACCTTGACACTTTTCTATGCGTTTCATTACTGGCAACTCGTGACTACAAGAATATTGGTCTTTTTTACTGCTCAGCCGTTGTAGAGGGAAAGGTCCATAAATCATACCTTCTGAGGACAAACATGTTCCATATTCTCAGCTAATCTTCTTCTAAAATTTTGAAGTATTCTTCACCCCGAATATCTGTATTACTTTTTATATTTAAGGGAACCACCCAGCTTCCAAACATGGATTCGGATGTCTGGATGGGATTTTATAAAAACATGAGAGATAACTGAACAATTAGGGAGGACCGGTATCTTACTCCCTACTGCTATATGAGTTGGACAGGTCCAACTCAGATACAAAATGCTCCTAATCGTCGCATTGCAACTACTTCTACACTCATCCTCCTTACAAGTGTAAAAGCGTAGTGTCTACTCTACAGTTAAGGGACTTTCCAGTATCACAAGGATAATTCTATTTAACCTATGTTCTCATTGATTATCTTTTATAGTTGCTTAGTTTTTTATCACGCCTAATATCTAAACTCTATTATGTTCCAGGATCAATACCTTTTCTGCTATGATGCCATTATTGATGAACTGGAAGACCTAATTTCAGATGACAATGGAGAGAAGAATCTGTAGTGGTAATTTTCACTTTGTTGTAAGTTCAATTGGTTGCTGCAGCAAGTAGAAGCACATGCATTGATTTTTCTCAACCTATATACTCTCTATATCTTGGTAGTCATGTCCGAAACAACAAACCCATCAATTTGTTGTCTTAACTTTTTACAGTAGCGATGAGTTAACAAGATCTTGGATTCTTGCTCACAATGGGATATGAAACAGTAGTTATGCTGAAGACACAAATCAGTTGGCTCTACTACAGTTGCTTCGTCTCGCTCTCTTTGCTTGGGATCCCAAGTTGTTCAAGAGATACCTGTTGCTATTTCCATCGACCTGAGAACTCATTTGGATCCACTATTTGAAATGCAAAGTGGAATGCCGATGTAAGATGTATCCTTTGGCTGACTGAATATAAATGAAGTTACAATGTTTGCAGATCCAGAAAATTATATTTCTGGTCATTATGGTTTTGCCGAGTAAACACGCTCATTCAACACTAAACTAAGTGAAACTGCTCACTTAATGATTATTTAGCATTGATGTGGATTTGAAATGGTGTATGCTGAAATATTTAAGTTGA</genome_strand>
        <mrna_strand>TGCAGTGCTGGTATCGGTAGGACTGGAACATATTGCACAATCCATAATACCATCCAGAGAATACTGGGTGGAGATATGTCTGCTCTTGACATCGTTAATACAGTAGCCATTTTTAGGTCTCAGCGAATTGGGATGGTCCAGACCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAATACCTTTTCTGCTATGATGCCATTATTGATGAACTGGAAGACCTAATTTCAGATGACAATGGAGAGAAGAATCTGTAGTG....................................................................................................................................................TAGCGATGAGTTAACAAGATCTTGGATTTTTGCTCACAATGGGATATGAAACAGTAGTTATGCTGAAGACACAAATCAGTTGGCTTTACTACAGTTGCTTCGTCTCGCTCTCTTTGCTTGGGATCCCAAGTTGTTCAAAAGATACCTGTTGCTATTTCCATCGACCTGAGAACTCATTTGGATCCACTATTTGAAATGCAAAGTGGAATGCCGATGTAAGATGTATCCTTTGGCTGACTGAATATAAATGAAGTTACAATGTTTGCAGATCCAGAAAATTATATTTCTGGTCATTATGGTTTTGCCGAGTAAACACGCTCATTCAACACTAAACTAAGTGAAACTGCTCACTTAATGATTATTTAGCATTGATGTGGATTTGAAATGGTGTATGCTGAAATATTTAAGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E395232" ref_strand="+" ref_description="SGN-E395232 [TUS-45-G24](-)">
      <seq>gaacatattgcacaatccataataccatccagagaatactggggggagatatgtttgcttttgacatcgttaatacagtagccatttttaggtctcagcgaattgggatggtccagaccatggatcaataccttttttgctatgatgccattattgatgaactggaagacctaatttcagatgacaatggagagaagaatctgtagtgtagcgatgagttaacaagatcttggatttttgctcacaatgggatatgaaacagtagttatgctgaagacacaaatcagttggctttactacagttggtttgtctcgctctctttgcttgggatcccaagttgttcaagagatacctgttgctatttccatcgacctgagaactcatttggatccactatttgaaatgcaaagtggaatgccgatgtaagatgtatcctttggctgactgaatataaatgaagttacaatgtttgcagatccagaaaattatatttttggtcattatggttttgccgagtaaacacgctcattcaacactaaaataagtgaaactgctcacttaatgattatttagcattgatgtggatttgaaatggtgtatgctgaaatatttaagttgaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0080C09.1" temp_strand="-" temp_description="C00HBa0080C09.1  CU928194.8 htgs_phase:3 submitted_to_sgn_as:C00HBa0080C09 sequenced_by:sanger upload_account_name:uk">
        <position start="74382" stop="71744"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74082" g_stop="73961" g_length="122"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="122" r_length="122" r_score="0.975"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73960" i_stop="72691" i_length="1270">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72690" g_stop="72605" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="123" r_stop="208" r_length="86" r_score="0.988"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72604" i_stop="72457" i_length="148">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72456" g_stop="72045" g_length="412"/>
          <reference_exon_boundary r_type="cDNA" r_start="209" r_stop="620" r_length="412" r_score="0.985"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="621" polyA_stop="634"/>
      <MATCH_line gen_id="C00HBa0080C09.1" gen_strand="-" ref_id="SGN-E395232" ref_strand="+">
        <total_alignment_score>0.984</total_alignment_score>
        <cumulative_length_of_scored_exons>620</cumulative_length_of_scored_exons>
        <coverage percentage="0.978" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0080C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395232" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="74082" e_stop="73961"/>
          <exon e_start="72690" e_stop="72605"/>
          <exon e_start="72456" e_stop="72045"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAACATATTGCACAATCCATAATACCATCCAGAGAATACTGGGTGGAGATATGTCTGCTCTTGACATCGTTAATACAGTAGCCATTTTTAGGTCTCAGCGAATTGGGATGGTCCAGACCATGGTACAGCTCCTCCTTTTTTCTTTTTGTCCTTTTCAATTTTCCAATATGCTTCCTTTTTGGCTTTATTTTAACTACCTACTGCTGATTATAAGACTACCGGAGGAGCAATAGTTTCTGATTTTTAAAGTATAAACCACATCCAGCTTTTTTCTGAAAACTTTAGCTGATTGCTGGTATAGAGCATAGTGAGTTCATGTTAGTTAAACATATTGAAAGGGCTAAGCTATCGTTTTAAATCCTTCCGTATACCCTTAGAGTATCAGTGATGCTAAAGGCTTGCTTGAGGTGTGTTTTAAGTCCTGGAACTAGGTGAAGCTCAAGTTATATGCATTACGTCGTTTAGATGGAGCTTTGGTGCAATTACCAAGGGACCAAGACATGTGCCTGTCTTTGAGGGGTAGCACCATACAATTAAAAAGATGTTGGCAAAGTTAATCATGCATTAGTGATTAGGAATAAGACTAAAAGAATTAGTATAAGAAAATTCTTTGTTAGAAACTTAAAATGTATTTTACATTTAAATCGGAAATTCAAATTAGCTGCGGGACTTGATTGACATGATTTCTTCTGGGACTTGATTGACATAATTATAGTTCTGTGTTTTCAAGGTTTTTGTTCAAATAATTATTGCTTGTATTTTAGTTTTTTTTTCCCCATGAATTGCATATGTTTTTTTAAAAAACTTTTATTGATTTTCTTTGTTAAGCCACTTAAAGCCCCAACACACCTTGACACTTTTCTATGCGTTTCATTACTGGCAACTCGTGACTACAAGAATATTGGTCTTTTTTACTGCTCAGCCGTTGTAGAGGGAAAGGTCCATAAATCATACCTTCTGAGGACAAACATGTTCCATATTCTCAGCTAATCTTCTTCTAAAATTTTGAAGTATTCTTCACCCCGAATATCTGTATTACTTTTTATATTTAAGGGAACCACCCAGCTTCCAAACATGGATTCGGATGTCTGGATGGGATTTTATAAAAACATGAGAGATAACTGAACAATTAGGGAGGACCGGTATCTTACTCCCTACTGCTATATGAGTTGGACAGGTCCAACTCAGATACAAAATGCTCCTAATCGTCGCATTGCAACTACTTCTACACTCATCCTCCTTACAAGTGTAAAAGCGTAGTGTCTACTCTACAGTTAAGGGACTTTCCAGTATCACAAGGATAATTCTATTTAACCTATGTTCTCATTGATTATCTTTTATAGTTGCTTAGTTTTTTATCACGCCTAATATCTAAACTCTATTATGTTCCAGGATCAATACCTTTTCTGCTATGATGCCATTATTGATGAACTGGAAGACCTAATTTCAGATGACAATGGAGAGAAGAATCTGTAGTGGTAATTTTCACTTTGTTGTAAGTTCAATTGGTTGCTGCAGCAAGTAGAAGCACATGCATTGATTTTTCTCAACCTATATACTCTCTATATCTTGGTAGTCATGTCCGAAACAACAAACCCATCAATTTGTTGTCTTAACTTTTTACAGTAGCGATGAGTTAACAAGATCTTGGATTCTTGCTCACAATGGGATATGAAACAGTAGTTATGCTGAAGACACAAATCAGTTGGCTCTACTACAGTTGCTTCGTCTCGCTCTCTTTGCTTGGGATCCCAAGTTGTTCAAGAGATACCTGTTGCTATTTCCATCGACCTGAGAACTCATTTGGATCCACTATTTGAAATGCAAAGTGGAATGCCGATGTAAGATGTATCCTTTGGCTGACTGAATATAAATGAAGTTACAATGTTTGCAGATCCAGAAAATTATATTTCTGGTCATTATGGTTTTGCCGAGTAAACACGCTCATTCAACACTAAACTAAGTGAAACTGCTCACTTAATGATTATTTAGCATTGATGTGGATTTGAAATGGTGTATGCTGAAATATTTAAGTTGA</genome_strand>
        <mrna_strand>GAACATATTGCACAATCCATAATACCATCCAGAGAATACTGGGGGGAGATATGTTTGCTTTTGACATCGTTAATACAGTAGCCATTTTTAGGTCTCAGCGAATTGGGATGGTCCAGACCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAATACCTTTTTTGCTATGATGCCATTATTGATGAACTGGAAGACCTAATTTCAGATGACAATGGAGAGAAGAATCTGTAGTG....................................................................................................................................................TAGCGATGAGTTAACAAGATCTTGGATTTTTGCTCACAATGGGATATGAAACAGTAGTTATGCTGAAGACACAAATCAGTTGGCTTTACTACAGTTGGTTTGTCTCGCTCTCTTTGCTTGGGATCCCAAGTTGTTCAAGAGATACCTGTTGCTATTTCCATCGACCTGAGAACTCATTTGGATCCACTATTTGAAATGCAAAGTGGAATGCCGATGTAAGATGTATCCTTTGGCTGACTGAATATAAATGAAGTTACAATGTTTGCAGATCCAGAAAATTATATTTTTGGTCATTATGGTTTTGCCGAGTAAACACGCTCATTCAACACTAAAATAAGTGAAACTGCTCACTTAATGATTATTTAGCATTGATGTGGATTTGAAATGGTGTATGCTGAAATATTTAAGTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E257885" ref_strand="-" ref_description="SGN-E257885 [cLEG-39-D12]">
      <seq>gacatcgttaatacagtagccatttttaggtctcagcgaattgggatggtccagaccatggatcaataccttttctgctatgatgccattattgatgaactggaagacctaatttcagatgacaatggagagaagaatctgtagtgtagcgatgagttaacaagatcttggattcttgctcacaatgggatatgaaacagtagttatgctgaagacacaaatcagttggctctactacagttgcttcgtctcgctctctttgcttgggatcccaagttgttcaagagatacctgttgctatttccatcgacctgagaactcatttggatccactatttgaaatgcaaagtggaatgccgatgtaagatgtatcctttggctgactgaatataaatgaagttacaatgtttgcagatccagaaaattatatttctggtcattatggttttgccgagtaaacacgctcattcaacactaaactaagtgaaactgctcacttaatgattatttagcattgatgtggatttgaaatggtgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0080C09.1" temp_strand="-" temp_description="C00HBa0080C09.1  CU928194.8 htgs_phase:3 submitted_to_sgn_as:C00HBa0080C09 sequenced_by:sanger upload_account_name:uk">
        <position start="74320" stop="71765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="74020" g_stop="73961" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="60" r_length="60" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73960" i_stop="72691" i_length="1270">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72690" g_stop="72605" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="61" r_stop="146" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72604" i_stop="72457" i_length="148">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72456" g_stop="72068" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="147" r_stop="535" r_length="389" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="537" polyA_stop="553"/>
      <MATCH_line gen_id="C00HBa0080C09.1" gen_strand="-" ref_id="SGN-E257885" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>535</cumulative_length_of_scored_exons>
        <coverage percentage="0.967" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0080C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257885" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="74020" e_stop="73961"/>
          <exon e_start="72690" e_stop="72605"/>
          <exon e_start="72456" e_stop="72068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GACATCGTTAATACAGTAGCCATTTTTAGGTCTCAGCGAATTGGGATGGTCCAGACCATGGTACAGCTCCTCCTTTTTTCTTTTTGTCCTTTTCAATTTTCCAATATGCTTCCTTTTTGGCTTTATTTTAACTACCTACTGCTGATTATAAGACTACCGGAGGAGCAATAGTTTCTGATTTTTAAAGTATAAACCACATCCAGCTTTTTTCTGAAAACTTTAGCTGATTGCTGGTATAGAGCATAGTGAGTTCATGTTAGTTAAACATATTGAAAGGGCTAAGCTATCGTTTTAAATCCTTCCGTATACCCTTAGAGTATCAGTGATGCTAAAGGCTTGCTTGAGGTGTGTTTTAAGTCCTGGAACTAGGTGAAGCTCAAGTTATATGCATTACGTCGTTTAGATGGAGCTTTGGTGCAATTACCAAGGGACCAAGACATGTGCCTGTCTTTGAGGGGTAGCACCATACAATTAAAAAGATGTTGGCAAAGTTAATCATGCATTAGTGATTAGGAATAAGACTAAAAGAATTAGTATAAGAAAATTCTTTGTTAGAAACTTAAAATGTATTTTACATTTAAATCGGAAATTCAAATTAGCTGCGGGACTTGATTGACATGATTTCTTCTGGGACTTGATTGACATAATTATAGTTCTGTGTTTTCAAGGTTTTTGTTCAAATAATTATTGCTTGTATTTTAGTTTTTTTTTCCCCATGAATTGCATATGTTTTTTTAAAAAACTTTTATTGATTTTCTTTGTTAAGCCACTTAAAGCCCCAACACACCTTGACACTTTTCTATGCGTTTCATTACTGGCAACTCGTGACTACAAGAATATTGGTCTTTTTTACTGCTCAGCCGTTGTAGAGGGAAAGGTCCATAAATCATACCTTCTGAGGACAAACATGTTCCATATTCTCAGCTAATCTTCTTCTAAAATTTTGAAGTATTCTTCACCCCGAATATCTGTATTACTTTTTATATTTAAGGGAACCACCCAGCTTCCAAACATGGATTCGGATGTCTGGATGGGATTTTATAAAAACATGAGAGATAACTGAACAATTAGGGAGGACCGGTATCTTACTCCCTACTGCTATATGAGTTGGACAGGTCCAACTCAGATACAAAATGCTCCTAATCGTCGCATTGCAACTACTTCTACACTCATCCTCCTTACAAGTGTAAAAGCGTAGTGTCTACTCTACAGTTAAGGGACTTTCCAGTATCACAAGGATAATTCTATTTAACCTATGTTCTCATTGATTATCTTTTATAGTTGCTTAGTTTTTTATCACGCCTAATATCTAAACTCTATTATGTTCCAGGATCAATACCTTTTCTGCTATGATGCCATTATTGATGAACTGGAAGACCTAATTTCAGATGACAATGGAGAGAAGAATCTGTAGTGGTAATTTTCACTTTGTTGTAAGTTCAATTGGTTGCTGCAGCAAGTAGAAGCACATGCATTGATTTTTCTCAACCTATATACTCTCTATATCTTGGTAGTCATGTCCGAAACAACAAACCCATCAATTTGTTGTCTTAACTTTTTACAGTAGCGATGAGTTAACAAGATCTTGGATTCTTGCTCACAATGGGATATGAAACAGTAGTTATGCTGAAGACACAAATCAGTTGGCTCTACTACAGTTGCTTCGTCTCGCTCTCTTTGCTTGGGATCCCAAGTTGTTCAAGAGATACCTGTTGCTATTTCCATCGACCTGAGAACTCATTTGGATCCACTATTTGAAATGCAAAGTGGAATGCCGATGTAAGATGTATCCTTTGGCTGACTGAATATAAATGAAGTTACAATGTTTGCAGATCCAGAAAATTATATTTCTGGTCATTATGGTTTTGCCGAGTAAACACGCTCATTCAACACTAAACTAAGTGAAACTGCTCACTTAATGATTATTTAGCATTGATGTGGATTTGAAATGGT</genome_strand>
        <mrna_strand>GACATCGTTAATACAGTAGCCATTTTTAGGTCTCAGCGAATTGGGATGGTCCAGACCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAATACCTTTTCTGCTATGATGCCATTATTGATGAACTGGAAGACCTAATTTCAGATGACAATGGAGAGAAGAATCTGTAGTG....................................................................................................................................................TAGCGATGAGTTAACAAGATCTTGGATTCTTGCTCACAATGGGATATGAAACAGTAGTTATGCTGAAGACACAAATCAGTTGGCTCTACTACAGTTGCTTCGTCTCGCTCTCTTTGCTTGGGATCCCAAGTTGTTCAAGAGATACCTGTTGCTATTTCCATCGACCTGAGAACTCATTTGGATCCACTATTTGAAATGCAAAGTGGAATGCCGATGTAAGATGTATCCTTTGGCTGACTGAATATAAATGAAGTTACAATGTTTGCAGATCCAGAAAATTATATTTCTGGTCATTATGGTTTTGCCGAGTAAACACGCTCATTCAACACTAAACTAAGTGAAACTGCTCACTTAATGATTATTTAGCATTGATGTGGATTTGAAATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E260187" ref_strand="-" ref_description="SGN-E260187 [cLEG-52-D20]">
      <seq>attgggatggtccagaccatggatcaataccttttctgctatgatgccattattgatgaactggaagacctaatttcagatgacaatggagagaagaatctgtagtgtagcgatgagttaacaagatcttggattcttgctcacaatgggatatgaaacagtagttatgctgaagacacaaatcagttggctctactacagttgcttcgtctcgctctctttgcttgggatcccaagttgttcaagagatacctgttgctatttccatcgacctgagaactcatttggatccactatttgaaatgcaaagtggaatgccgatgtaagatgtatcctttggctgactgaatataaatgaagttacaatgtttgcagatccagaaaattatatttctggtcattatggttttgccgagtaaacacgctcattcaacactaaactaagtgaaactgctcacttaatgattatttagcattgatgtggatttgaaatggtgaaaaaaaaaaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0080C09.1" temp_strand="-" temp_description="C00HBa0080C09.1  CU928194.8 htgs_phase:3 submitted_to_sgn_as:C00HBa0080C09 sequenced_by:sanger upload_account_name:uk">
        <position start="74281" stop="71765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73981" g_stop="73961" g_length="21"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="21" r_length="21" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73960" i_stop="72691" i_length="1270">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72690" g_stop="72605" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="22" r_stop="107" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72604" i_stop="72457" i_length="148">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72456" g_stop="72068" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="108" r_stop="496" r_length="389" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="498" polyA_stop="514"/>
      <MATCH_line gen_id="C00HBa0080C09.1" gen_strand="-" ref_id="SGN-E260187" ref_strand="-">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>496</cumulative_length_of_scored_exons>
        <coverage percentage="0.965" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0080C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E260187" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="73981" e_stop="73961"/>
          <exon e_start="72690" e_stop="72605"/>
          <exon e_start="72456" e_stop="72068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTGGGATGGTCCAGACCATGGTACAGCTCCTCCTTTTTTCTTTTTGTCCTTTTCAATTTTCCAATATGCTTCCTTTTTGGCTTTATTTTAACTACCTACTGCTGATTATAAGACTACCGGAGGAGCAATAGTTTCTGATTTTTAAAGTATAAACCACATCCAGCTTTTTTCTGAAAACTTTAGCTGATTGCTGGTATAGAGCATAGTGAGTTCATGTTAGTTAAACATATTGAAAGGGCTAAGCTATCGTTTTAAATCCTTCCGTATACCCTTAGAGTATCAGTGATGCTAAAGGCTTGCTTGAGGTGTGTTTTAAGTCCTGGAACTAGGTGAAGCTCAAGTTATATGCATTACGTCGTTTAGATGGAGCTTTGGTGCAATTACCAAGGGACCAAGACATGTGCCTGTCTTTGAGGGGTAGCACCATACAATTAAAAAGATGTTGGCAAAGTTAATCATGCATTAGTGATTAGGAATAAGACTAAAAGAATTAGTATAAGAAAATTCTTTGTTAGAAACTTAAAATGTATTTTACATTTAAATCGGAAATTCAAATTAGCTGCGGGACTTGATTGACATGATTTCTTCTGGGACTTGATTGACATAATTATAGTTCTGTGTTTTCAAGGTTTTTGTTCAAATAATTATTGCTTGTATTTTAGTTTTTTTTTCCCCATGAATTGCATATGTTTTTTTAAAAAACTTTTATTGATTTTCTTTGTTAAGCCACTTAAAGCCCCAACACACCTTGACACTTTTCTATGCGTTTCATTACTGGCAACTCGTGACTACAAGAATATTGGTCTTTTTTACTGCTCAGCCGTTGTAGAGGGAAAGGTCCATAAATCATACCTTCTGAGGACAAACATGTTCCATATTCTCAGCTAATCTTCTTCTAAAATTTTGAAGTATTCTTCACCCCGAATATCTGTATTACTTTTTATATTTAAGGGAACCACCCAGCTTCCAAACATGGATTCGGATGTCTGGATGGGATTTTATAAAAACATGAGAGATAACTGAACAATTAGGGAGGACCGGTATCTTACTCCCTACTGCTATATGAGTTGGACAGGTCCAACTCAGATACAAAATGCTCCTAATCGTCGCATTGCAACTACTTCTACACTCATCCTCCTTACAAGTGTAAAAGCGTAGTGTCTACTCTACAGTTAAGGGACTTTCCAGTATCACAAGGATAATTCTATTTAACCTATGTTCTCATTGATTATCTTTTATAGTTGCTTAGTTTTTTATCACGCCTAATATCTAAACTCTATTATGTTCCAGGATCAATACCTTTTCTGCTATGATGCCATTATTGATGAACTGGAAGACCTAATTTCAGATGACAATGGAGAGAAGAATCTGTAGTGGTAATTTTCACTTTGTTGTAAGTTCAATTGGTTGCTGCAGCAAGTAGAAGCACATGCATTGATTTTTCTCAACCTATATACTCTCTATATCTTGGTAGTCATGTCCGAAACAACAAACCCATCAATTTGTTGTCTTAACTTTTTACAGTAGCGATGAGTTAACAAGATCTTGGATTCTTGCTCACAATGGGATATGAAACAGTAGTTATGCTGAAGACACAAATCAGTTGGCTCTACTACAGTTGCTTCGTCTCGCTCTCTTTGCTTGGGATCCCAAGTTGTTCAAGAGATACCTGTTGCTATTTCCATCGACCTGAGAACTCATTTGGATCCACTATTTGAAATGCAAAGTGGAATGCCGATGTAAGATGTATCCTTTGGCTGACTGAATATAAATGAAGTTACAATGTTTGCAGATCCAGAAAATTATATTTCTGGTCATTATGGTTTTGCCGAGTAAACACGCTCATTCAACACTAAACTAAGTGAAACTGCTCACTTAATGATTATTTAGCATTGATGTGGATTTGAAATGGT</genome_strand>
        <mrna_strand>ATTGGGATGGTCCAGACCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAATACCTTTTCTGCTATGATGCCATTATTGATGAACTGGAAGACCTAATTTCAGATGACAATGGAGAGAAGAATCTGTAGTG....................................................................................................................................................TAGCGATGAGTTAACAAGATCTTGGATTCTTGCTCACAATGGGATATGAAACAGTAGTTATGCTGAAGACACAAATCAGTTGGCTCTACTACAGTTGCTTCGTCTCGCTCTCTTTGCTTGGGATCCCAAGTTGTTCAAGAGATACCTGTTGCTATTTCCATCGACCTGAGAACTCATTTGGATCCACTATTTGAAATGCAAAGTGGAATGCCGATGTAAGATGTATCCTTTGGCTGACTGAATATAAATGAAGTTACAATGTTTGCAGATCCAGAAAATTATATTTCTGGTCATTATGGTTTTGCCGAGTAAACACGCTCATTCAACACTAAACTAAGTGAAACTGCTCACTTAATGATTATTTAGCATTGATGTGGATTTGAAATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E257813" ref_strand="-" ref_description="SGN-E257813 [cLEG-39-A4]">
      <seq>tagcgatgagttaacaagatcttggattcttgctcacaatgggatatgaaacagtagttatgttgaagacacaaatcagttggctttaccacagttgcttcgtctcgctctctttgcttgggatcccaagttgttcaagagatacctgttgctatttccatcgacttgagaactcatttggatccactatttgaaatgcaaagtggaatgccgatgtaagatgtatcctttggctgactgaatataaatgaagttacaatgtttgcagatccagaaaattatatttctggtcattatggtttggccgagtaaacacgctcattcaacactaaactaagtgaaactgctcacttaatgcattatttagcattcatgtggatttgaaatggtgaaaaaaaagaaaaaaaa</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0080C09.1" temp_strand="-" temp_description="C00HBa0080C09.1  CU928194.8 htgs_phase:3 submitted_to_sgn_as:C00HBa0080C09 sequenced_by:sanger upload_account_name:uk">
        <position start="72756" stop="71765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72456" g_stop="72068" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="390" r_length="390" r_score="0.979"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="392" polyA_stop="408"/>
      <MATCH_line gen_id="C00HBa0080C09.1" gen_strand="-" ref_id="SGN-E257813" ref_strand="-">
        <total_alignment_score>0.979</total_alignment_score>
        <cumulative_length_of_scored_exons>389</cumulative_length_of_scored_exons>
        <coverage percentage="0.953" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0080C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E257813" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="72456" e_stop="72068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TAGCGATGAGTTAACAAGATCTTGGATTCTTGCTCACAATGGGATATGAAACAGTAGTTATGCTGAAGACACAAATCAGTTGGCTCTACTACAGTTGCTTCGTCTCGCTCTCTTTGCTTGGGATCCCAAGTTGTTCAAGAGATACCTGTTGCTATTTCCATCGACCTGAGAACTCATTTGGATCCACTATTTGAAATGCAAAGTGGAATGCCGATGTAAGATGTATCCTTTGGCTGACTGAATATAAATGAAGTTACAATGTTTGCAGATCCAGAAAATTATATTTCTGGTCATTATGGTTTTGCCGAGTAAACACGCTCATTCAACACTAAACTAAGTGAAACTGCTCACTTAATG-ATTATTTAGCATTGATGTGGATTTGAAATGGT</genome_strand>
        <mrna_strand>TAGCGATGAGTTAACAAGATCTTGGATTCTTGCTCACAATGGGATATGAAACAGTAGTTATGTTGAAGACACAAATCAGTTGGCTTTACCACAGTTGCTTCGTCTCGCTCTCTTTGCTTGGGATCCCAAGTTGTTCAAGAGATACCTGTTGCTATTTCCATCGACTTGAGAACTCATTTGGATCCACTATTTGAAATGCAAAGTGGAATGCCGATGTAAGATGTATCCTTTGGCTGACTGAATATAAATGAAGTTACAATGTTTGCAGATCCAGAAAATTATATTTCTGGTCATTATGGTTTGGCCGAGTAAACACGCTCATTCAACACTAAACTAAGTGAAACTGCTCACTTAATGCATTATTTAGCATTCATGTGGATTTGAAATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E263465" ref_strand="-" ref_description="SGN-E263465 [cLEG-69-A10]">
      <seq>aaatcagttggctctactacagttgcttcgtctcgctctttttgcttgggatcccaagttgttcaagagatacctgttgctatttccatcgacctgagaactcatttggatccactatttgaaatgcaaagtggaatgccgatgtaagatgtatcctttggctgactgaatataaatgaagttacaatgtttgcagatccagaaaattatatttctggtcattatggttttgccgagtaaacacgctcattcaacactaaactaagtgaaactgctcacttaatgattatttagcattgatgtggatttgaaatggtgaaaaaaaaaaaaaaaaaactcgagac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0080C09.1" temp_strand="-" temp_description="C00HBa0080C09.1  CU928194.8 htgs_phase:3 submitted_to_sgn_as:C00HBa0080C09 sequenced_by:sanger upload_account_name:uk">
        <position start="72684" stop="71765"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="72384" g_stop="72068" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="0.997"/>
        </exon>
      </exon-intron_info>
      <PPA_line polyA_start="319" polyA_stop="337"/>
      <MATCH_line gen_id="C00HBa0080C09.1" gen_strand="-" ref_id="SGN-E263465" ref_strand="-">
        <total_alignment_score>0.997</total_alignment_score>
        <cumulative_length_of_scored_exons>317</cumulative_length_of_scored_exons>
        <coverage percentage="0.922" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0080C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E263465" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="72384" e_stop="72068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAATCAGTTGGCTCTACTACAGTTGCTTCGTCTCGCTCTCTTTGCTTGGGATCCCAAGTTGTTCAAGAGATACCTGTTGCTATTTCCATCGACCTGAGAACTCATTTGGATCCACTATTTGAAATGCAAAGTGGAATGCCGATGTAAGATGTATCCTTTGGCTGACTGAATATAAATGAAGTTACAATGTTTGCAGATCCAGAAAATTATATTTCTGGTCATTATGGTTTTGCCGAGTAAACACGCTCATTCAACACTAAACTAAGTGAAACTGCTCACTTAATGATTATTTAGCATTGATGTGGATTTGAAATGGT</genome_strand>
        <mrna_strand>AAATCAGTTGGCTCTACTACAGTTGCTTCGTCTCGCTCTTTTTGCTTGGGATCCCAAGTTGTTCAAGAGATACCTGTTGCTATTTCCATCGACCTGAGAACTCATTTGGATCCACTATTTGAAATGCAAAGTGGAATGCCGATGTAAGATGTATCCTTTGGCTGACTGAATATAAATGAAGTTACAATGTTTGCAGATCCAGAAAATTATATTTCTGGTCATTATGGTTTTGCCGAGTAAACACGCTCATTCAACACTAAACTAAGTGAAACTGCTCACTTAATGATTATTTAGCATTGATGTGGATTTGAAATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E252184" ref_strand="-" ref_description="SGN-E252184 [cLEG-8-L21]">
      <seq>atttttaggtctcagcgaattgggatggtccagaccatggatcaataccttttctgctataatgccaatattgatgaactgcaagacctaatttcagatgacaatggagagaagaatctgtagtgtagcgatgagttaacaagatcttggattcttgctcacaatgggatatgaaacagtagttatgggccttgaagacacaaatcagttggctctactacagttgcttcgtctcgctctctttgcttgggatcccaagttgttcaagagatacctgttgctatttccatcgacctgagaactcatttggatccactatttgaaatgcaaagtggaatgccgatgtaagatgtatcctttggctgactgaatataaatgaagttacaatgtttgcagatccagaaaattatatttctggtcattatggttttgccgagtaaacacgctcattcaacactaaactaagtgaaactgctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0080C09.1" temp_strand="-" temp_description="C00HBa0080C09.1  CU928194.8 htgs_phase:3 submitted_to_sgn_as:C00HBa0080C09 sequenced_by:sanger upload_account_name:uk">
        <position start="74299" stop="71808"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="73999" g_stop="73961" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="39" r_length="39" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="73960" i_stop="72691" i_length="1270">
            <donor d_prob="0.992" d_score="0.00"/>
            <acceptor a_prob="0.917" a_score="0.94"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="72690" g_stop="72605" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="40" r_stop="125" r_length="86" r_score="0.965"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="72604" i_stop="72457" i_length="148">
            <donor d_prob="0.792" d_score="0.98"/>
            <acceptor a_prob="0.648" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72456" g_stop="72108" g_length="349"/>
          <reference_exon_boundary r_type="cDNA" r_start="126" r_stop="478" r_length="353" r_score="0.977"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0080C09.1" gen_strand="-" ref_id="SGN-E252184" ref_strand="-">
        <total_alignment_score>0.975</total_alignment_score>
        <cumulative_length_of_scored_exons>474</cumulative_length_of_scored_exons>
        <coverage percentage="0.992" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0080C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E252184" rDNA_strand="-"/>
        <gDNA_exon_coordinates>
          <exon e_start="73999" e_stop="73961"/>
          <exon e_start="72690" e_stop="72605"/>
          <exon e_start="72456" e_stop="72108"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ATTTTTAGGTCTCAGCGAATTGGGATGGTCCAGACCATGGTACAGCTCCTCCTTTTTTCTTTTTGTCCTTTTCAATTTTCCAATATGCTTCCTTTTTGGCTTTATTTTAACTACCTACTGCTGATTATAAGACTACCGGAGGAGCAATAGTTTCTGATTTTTAAAGTATAAACCACATCCAGCTTTTTTCTGAAAACTTTAGCTGATTGCTGGTATAGAGCATAGTGAGTTCATGTTAGTTAAACATATTGAAAGGGCTAAGCTATCGTTTTAAATCCTTCCGTATACCCTTAGAGTATCAGTGATGCTAAAGGCTTGCTTGAGGTGTGTTTTAAGTCCTGGAACTAGGTGAAGCTCAAGTTATATGCATTACGTCGTTTAGATGGAGCTTTGGTGCAATTACCAAGGGACCAAGACATGTGCCTGTCTTTGAGGGGTAGCACCATACAATTAAAAAGATGTTGGCAAAGTTAATCATGCATTAGTGATTAGGAATAAGACTAAAAGAATTAGTATAAGAAAATTCTTTGTTAGAAACTTAAAATGTATTTTACATTTAAATCGGAAATTCAAATTAGCTGCGGGACTTGATTGACATGATTTCTTCTGGGACTTGATTGACATAATTATAGTTCTGTGTTTTCAAGGTTTTTGTTCAAATAATTATTGCTTGTATTTTAGTTTTTTTTTCCCCATGAATTGCATATGTTTTTTTAAAAAACTTTTATTGATTTTCTTTGTTAAGCCACTTAAAGCCCCAACACACCTTGACACTTTTCTATGCGTTTCATTACTGGCAACTCGTGACTACAAGAATATTGGTCTTTTTTACTGCTCAGCCGTTGTAGAGGGAAAGGTCCATAAATCATACCTTCTGAGGACAAACATGTTCCATATTCTCAGCTAATCTTCTTCTAAAATTTTGAAGTATTCTTCACCCCGAATATCTGTATTACTTTTTATATTTAAGGGAACCACCCAGCTTCCAAACATGGATTCGGATGTCTGGATGGGATTTTATAAAAACATGAGAGATAACTGAACAATTAGGGAGGACCGGTATCTTACTCCCTACTGCTATATGAGTTGGACAGGTCCAACTCAGATACAAAATGCTCCTAATCGTCGCATTGCAACTACTTCTACACTCATCCTCCTTACAAGTGTAAAAGCGTAGTGTCTACTCTACAGTTAAGGGACTTTCCAGTATCACAAGGATAATTCTATTTAACCTATGTTCTCATTGATTATCTTTTATAGTTGCTTAGTTTTTTATCACGCCTAATATCTAAACTCTATTATGTTCCAGGATCAATACCTTTTCTGCTATGATGCCATTATTGATGAACTGGAAGACCTAATTTCAGATGACAATGGAGAGAAGAATCTGTAGTGGTAATTTTCACTTTGTTGTAAGTTCAATTGGTTGCTGCAGCAAGTAGAAGCACATGCATTGATTTTTCTCAACCTATATACTCTCTATATCTTGGTAGTCATGTCCGAAACAACAAACCCATCAATTTGTTGTCTTAACTTTTTACAGTAGCGATGAGTTAACAAGATCTTGGATTCTTGCTCACAATGGGATATGAAACAGTAGTTAT--G-C-TGAAGACACAAATCAGTTGGCTCTACTACAGTTGCTTCGTCTCGCTCTCTTTGCTTGGGATCCCAAGTTGTTCAAGAGATACCTGTTGCTATTTCCATCGACCTGAGAACTCATTTGGATCCACTATTTGAAATGCAAAGTGGAATGCCGATGTAAGATGTATCCTTTGGCTGACTGAATATAAATGAAGTTACAATGTTTGCAGATCCAGAAAATTATATTTCTGGTCATTATGGTTTTGCCGAGTAAACACGCTCATTCAACACTAAACTAAGTGAAACTGCTC</genome_strand>
        <mrna_strand>ATTTTTAGGTCTCAGCGAATTGGGATGGTCCAGACCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAATACCTTTTCTGCTATAATGCCAATATTGATGAACTGCAAGACCTAATTTCAGATGACAATGGAGAGAAGAATCTGTAGTG....................................................................................................................................................TAGCGATGAGTTAACAAGATCTTGGATTCTTGCTCACAATGGGATATGAAACAGTAGTTATGGGCCTTGAAGACACAAATCAGTTGGCTCTACTACAGTTGCTTCGTCTCGCTCTCTTTGCTTGGGATCCCAAGTTGTTCAAGAGATACCTGTTGCTATTTCCATCGACCTGAGAACTCATTTGGATCCACTATTTGAAATGCAAAGTGGAATGCCGATGTAAGATGTATCCTTTGGCTGACTGAATATAAATGAAGTTACAATGTTTGCAGATCCAGAAAATTATATTTCTGGTCATTATGGTTTTGCCGAGTAAACACGCTCATTCAACACTAAACTAAGTGAAACTGCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E369150" ref_strand="+" ref_description="SGN-E369150 [TUS-23-A14]">
      <seq>ccactagcacacacctttgaagacttctgggaaatgataatccagcaacgctgtcctgtcattgtgatgcttacacgattggttgacaattacaagatggtgaagtgtggggactactttcaggcagaggatgggcctagaacatttggcaatatatgtattgtgacaaaatatatgacgagtgatgcctccttagtgttgcgaactctggaggtgaactatattgagtcagaagaaccacctttgtgtgttttacacattcagtatcctgaatggcctgaccatggagttcccagagacacacttgctgttcgtgagattctgaaacgaacgtacaatttgcctcttggtcttggaccaattgtagtacactgcagtgctggtatcggtaggactggaacatattgcacaatccataataccatccagagaatactgggtggagatatgtctgctcttgacatcgttaatacagtagccatttttaggtctcagcgaattgggatggtccagaccatggatcaataccttttctgctatgatgccattattgatgaactggaagacctaatttcagatgacaatggagagaagaatctgtagtgtagcgatgagttaacaagatcttggattcttgctcacaatgggatatgaaacagtagttatgctgaagacacaaatcagttggctctactacagttgc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0080C09.1" temp_strand="-" temp_description="C00HBa0080C09.1  CU928194.8 htgs_phase:3 submitted_to_sgn_as:C00HBa0080C09 sequenced_by:sanger upload_account_name:uk">
        <position start="80342" stop="72059"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80042" g_stop="79947" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79946" i_stop="78211" i_length="1736">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78210" g_stop="78079" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="228" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78078" i_stop="74341" i_length="3738">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74340" g_stop="74192" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="377" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74191" i_stop="74103" i_length="89">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74102" g_stop="73961" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="519" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="73960" i_stop="72691" i_length="1270">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="72690" g_stop="72605" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="520" r_stop="605" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="72604" i_stop="72457" i_length="148">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="72456" g_stop="72359" g_length="98"/>
          <reference_exon_boundary r_type="cDNA" r_start="606" r_stop="703" r_length="98" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0080C09.1" gen_strand="-" ref_id="SGN-E369150" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>703</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0080C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E369150" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80042" e_stop="79947"/>
          <exon e_start="78210" e_stop="78079"/>
          <exon e_start="74340" e_stop="74192"/>
          <exon e_start="74102" e_stop="73961"/>
          <exon e_start="72690" e_stop="72605"/>
          <exon e_start="72456" e_stop="72359"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTAGCACACACCTTTGAAGACTTCTGGGAAATGATAATCCAGCAACGCTGTCCTGTCATTGTGATGCTTACACGATTGGTTGACAATTACAAGGTATTCAATTGTTTAGACTAAGGTATACTTGCTTTGCAACCAAAATAAGTAAACATTTTATGACTATAGTCTGATCTATAATTTTCTTTATGGAAGAGAGAACCGACACTTTTACCTTTTTCAGTTTCTTCATTTGTAACCCCCTCCCACACACACACAGAAGTAGACCTGGCATTTTTATGCATTGAAGAAGTTGCAAATGAATCTTTGTTGGGTCTTGAACTTTTATCTTAAGATACAAAACCGAAGCCAGGAAGCCTGGCATGGAAAGGCTCAAGAAAAAAGTATCTTACAAATATACCTTTCATGCGTTCGCGCATAGAGCTTTGGTATAGCACTAAGGGCGCTACACGCTATGTTTGGGTTAGCGCTCGTCATGTGTTTGAACTTTGTTGCGGACAAAAGGTTGGAATTTAAGTGAGGAATAATAGAGGTTTGACCATTACTCAAGGAGTTTCGAACTATTTGCTCATGGACGTGGAAAATTTTCTGGTTATTATAAAAAGATGTTCCTTTTGTTCCTCCATCTTTGCTCCTAAACCTGCGATACTGAAAGGCTAATGTTGGTATTGCTAATTAGCATCCTCATTACTTCATGTGTTCTTTCCTCATTTCTTTTTTGGCTCCAGCGTCAAGCAGGGTGTCATGGGTTTAAGGTTTGTACTTTGCTAAATACTTGTGACTTGAACATATCTTGCTACTCTATACCTATTCTTCTTTCTTCAAATATGCATGAGCTTGAACTTAGATTGAATATTCTACGTGGATATTGAGTAATCTTATGGACATTGCGCATTGTCAAGTTTGTGATCTAGAGATGAAAATATAGATTGGAGGGAGCAATTGTTGCCAGAGGAACTAGCATATGCGGGTGTAGGATCAAATTAGTATTCAATCACAACAACAATAATAACGCCTCAGTCCCAAATAAATTAGGGATCGGCTATATGAATCACTGGCCATGTTTCCATTCTCATCTCAGGACAATATTATACAAATTAGAAATAGTAAAGTAAAATGTACTAAAAGTTCTATATATATTTTTCGTTTAGACTCATCTTGGACCAGTATTATGCAAAATAAAAATAGAAGTAAAATCTACTAGACGTTCTCTATATTTCAAATTATATATAGAATCAGAATTCAAGAAAAATGGTTAGAATTAGAGATTTATCTCTTTCAGCAAAGGAGTTCTATTCATTTTGTTGGGACATCATCTTTTTTGCATCTGTGTTTTGTCTTCTATTTTTCATATTAGATTTCAGGAGCCCCTCTTAGAAGCACACCGAAGCCTGAACAACTTTGTCTTATTCAAATAGAATAGTGTTGTCTCAGGATATTGTGGGCTAGGGCTTCTGAGTTGACGCTGGGTCATATGATCTTTGGAGGAATTAGAGTAGTCTGATGTAGAAAACCCTTTTTACCTTTCTGATATGGTTTGTGCCTCACATCTTGTCTCAATTGCATTTCCAATCTTTACCAGATAAATGGAAGCAATTAAAAGGTAGGAAGATGTGTTCTCGCTGCATGGTCGTTATCCTGAGTCTGTAATTTTTTGACCAGTATCGGAATTGCTATTCCCTACTTTAGTCAGTTTTCAGACTTGTTAACTCTCGAGTCTATTTTAGCATTTTGTTCTAGTGAGTTCCCACTTGAAATATAAGTGATTCCTGTTGACCTATATTCAGTATTAGCAGTTTTATATTTACCTTCTCGTTTGATGAAATCAAATGCAGATGGTGAAGTGTGGGGACTACTTTCAGGCAGAGGATGGGCCTAGAACATTTGGCAATATATGTATTGTGACAAAATATATGACGAGTGATGCCTCCTTAGTGTTGCGAACTCTGGAGGTGAACTATATTGAGGTTAGTAAATTCTTGTCAGCTCTTGTATGGTACAAGAAATAAACATGAATGAAAATATCTTATCTTGTCATTGACCGTTGAGTTTGGAACCAGCTTAAGAAATCTTTTAACCAATATCTGTGATGGAGGATGGTTGAATTTGACGGTTTCATACTTAATTTCTGCACTGTATGTATACACAGAGTTGGCTTGCATTGTATTACAACAATAGATTTTCAGTGTCCTGTTATAAGCTCCGTTCTATTAAATTTGATGTCCTGAAAAGAAACACCTGATTACCTTAGAAGGAATTTAGTTTTCATTTTTAATATAGATTTTCCGTGTTACTCTTGCACGCTGAATATGGTAGTTTTCATTGTTCACCATGTCTTGTTTCTACTGCTGCCTTACTTTCCGTAACTTACAGAACTTCTTTAAGTGATGCAATGTCCTCTGATCAGTCCAAATCCTTTCTTGTTGGCTATATCTCGAATCGGTCTTGACTTTGGATGGTTCCTTATCCTTGAAGCTGAGTATTATCAGTTTCTTTGTTGTGTTATATACCCAAGATTTGCTTTCTTTTTTCTTTTAACATTCTATTTTTTTTCAGAACTGTCATAAAATCATTGTTCTCAGGGGCTCTACTGAAGTAGATCCTATATCGTTAATTTCTGGGTTTTTCTTCCCCTATGGTTCCTCAAAGTTGATATATAGAACGAATTTTAATGAGAGACAATTAATTGATGCAGTTTCATCTAGGATTGCACTGATTATCTTCATAAAGTTATTTATTTTGGTTCACATCTCCTGATAAAAATGCTTGTACTGAATTTTAAATCTGGTTTAGCAAGAGTGGACTGCTGAATATTATCACGCCCCTTTGAAATAAACTGTGTCAATAAGTTGAACTTGAACAATTTGCAGAAATTTGGTGATTCTTGGGTAAAATCCATAATTCATTCGATAAGGGTAGACCTCATTATATTCTCGCGAACTTCTTTCAATACATGCAATCTTTTCAAAATCTCCATCGTACCTAAACTTGGCAGTTACTTCGTATTCTATTGAAGATTCTGCTTTGAATTCTGAATATCTGCTGTCATCAGGAGCTTATTTGTACCAAGTTCTATCTGTCTTTTCACTACATCCTCCATCAAATCTAAATATAAGATAATTCCATAAGAAATATATTCCTTCAAGTTCTCTATTGTTCATAAATAGTTTGCTTATCATTTTCTGTGCACTCTCTCTGTTCCACATTATATGACACTGTACTATTTGGAGAGTCAGACAGCTTTTCTTTAACCACCAACTCTTTCATGTGCTTTAATCTTATATTTTTAAATTATAAGGAGTTGTAATTTATAGTGCTTTCTATCTAGCTTAATTATTTAAAATCTTATTTTAGCAAGATTAAGAAGTAAGGTTGCCCCTCATACTTTGAGCCAACTCATCCTTTTTCAAATGGAGGGGGCAGTATCTATGAATTTTCTAACGTAAAGATCTTTATATCTTCTGGTATCCAGAGTATATTCAGTCCCTTCCTTCTTTTTAATACATCTCCATAATGCTATTTATCTTTTGCACTTATATTTTTTATATTTCTTATTATCTTTTGTGCTCTCTGGATAATGTACAATGATATGAAGTTACAAGTTAAATTTATAATAATGTACAATGATATGCTCCTACTTTCTCATTTCCTGTACGGCATTTTTCTTTTAGCCTATTTACATATTGATATTTTCTCTTTGTATCTTAATGTTGTCCTTGTTAACAGCTCTACCTTCTTTTACTTACCCCGATCTCGCAGATATTTCCTAATGATGACACCATATCCTCAATCCGGTTAGTTCTTAACAAATTAGTATTCACAATTTGTGAGGGTCGTTCTAGCTATATAAGAAATCCTTGACTAATAATAACATAATAAGATAAATAACTTACTTCAGAAATCAGTAATTGAATAAGTATTTGATCCATTGCATAACCATTTCAGTATTTAAGTTCAAGTAAACCATAGGATATATTCTTGCTGGTTTTCTAACAACTGGTTGATATTTATACCTAGTTTGCGTATCATTTTTTCATGATAAGGTAAAGTATATTATTGACAATTGTGGAAACCCCTATACAAGTAGTACACCAAAAAGGAAGAACCTACACCAAAATATGGTTCTCAAAAGAGACCCAATCCTCTCTACCATTAGGGTGCTTATCATTTTTTCTTAAATCAAATTTTCTTCTATCTGTATCTTCTATCTATATGTTTTCTAATACAAGGATCTTCATCATATCTTCTGTCATCAAGAGTATATTCATAGTGTCATACAGAGTCCTATCTATTTTCCATCAGTGTTGAGCCCATTGCAGATTTCAAAATCATTTTTAACACCTTTAAATCTGCCAATAAGATACCCTTCAAGGAGCTCTTTCCTTTTCTTAATTCTGCTCCCATCTACCTCAGTGGCAAAACTCTGTGATATCGCTGATGCTTCTTTGTTCATTTCTGGTCAACTATTTAACTGGGCTGCTTCAGCATAGAAATATGCTGAGAGGTCTAGTTAGTCTCTTAACCCTTGTCTGTGAATATCTTGTTATTAGCTAAGTCCTGGCACGATAATCACACTTCTTCAGACTCCCTGGTAACTTAGTGTACTCATATATTTCCATACCTGTTATAAGTTTTATGGCACTACATATTCATGTGCTTGTTCCTTCTCACTCAATTTCCTGTAGATCTCCACTGTTCTTTTGGATGCTAGCATAACCTTTGGCAGATCCATAATAGGATCTCTCTGCTGACCGTCAATCTCGACTAAGAATTTCCTTCTCTCGATCTATTCTTAACAGACTAACAGTATTCATACTCCGCAGTGGTTTCTATAATGTCAAGGCATTGATTCCTGGCTGTATAGAAGTCTCTCCCCATTAACTGTTTACGTGCTAAGTTTTCAGTCAATCAGTTTTCTAGCCACCATGCCTTAGGCGTAACTTACTGAGTGATCCCCAAATACAAAGTGCGATGAGAGAGAAAATCCTATTGCTTCTGGAATGTTGAGCTAATTGTGGATGCGGGAGTTCACCTTCAGAGTATCTGAAACTGGATCTTGTGGTTGAAGAGTGTTTCTCATATTAACATGAAGTTGGCTCTGTCCCAGCAGCACATGTAAACACGGAGCGTCTAAGGTCTGTGCAAGATAAGTTTTAGAAAAGCGCTAAGTAGTTTTAGGCTAAGTTGTGTGGACTCTTCACTTTCGATGCCGCACCTGTGTTGGATTCTCCAAAAATACTCTGCTTTTGGAGATTCTGACATGCACCCGTTGGCATTTTTGAAGAGTCCAAGCAACATAGGTTTAGGTGAATGTTTCCCTGGTCAATCCTGCATGTTAGATTAAGGTTATGATCTTTAATAATTATATCTTTATGCCTTTATATTTTACATATGTATATTAAGTACTAGTCAGTAGTGCTGGTGTGATTGCTTATACTCAACCACAACTACACCTCAGTCCCAAACAAATTGGGGTCGGCAAGGATTGCTTGTATTCAATCCCTTCAAATTTGATTTCTCTCTCCCTTGTAAGACCCAGCCCATTATCCCAATATTAGCTGGACCTGATGGGGTGACGTCGTTTTATTCCCCTATCTTCCAGCGCCAATAGTCATCTCTATTTAGACTCAACTTTGATAGATCTTTTGTTCTGTTATGTAGAAGCTAAAATACCCACCTGATCTGCTTCTCTTACTATGTGCCAGTCAGAAGAACCACCTTTGTGTGTTTTACACATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCCAGAGACACACTTGCTGTTCGTGAGATTCTGAAACGAACGTACAATTTGCCTCTTGGTCTTGGACCAATTGTAGTACACTGCAGGTTTCTCTGATCACTGACCCTGTAAATGTGCTTTTTGAATTCTGTTATTTAATTGTTTGTGTAGCTTGATGCCTCATTCTCTTGTACAGTGCTGGTATCGGTAGGACTGGAACATATTGCACAATCCATAATACCATCCAGAGAATACTGGGTGGAGATATGTCTGCTCTTGACATCGTTAATACAGTAGCCATTTTTAGGTCTCAGCGAATTGGGATGGTCCAGACCATGGTACAGCTCCTCCTTTTTTCTTTTTGTCCTTTTCAATTTTCCAATATGCTTCCTTTTTGGCTTTATTTTAACTACCTACTGCTGATTATAAGACTACCGGAGGAGCAATAGTTTCTGATTTTTAAAGTATAAACCACATCCAGCTTTTTTCTGAAAACTTTAGCTGATTGCTGGTATAGAGCATAGTGAGTTCATGTTAGTTAAACATATTGAAAGGGCTAAGCTATCGTTTTAAATCCTTCCGTATACCCTTAGAGTATCAGTGATGCTAAAGGCTTGCTTGAGGTGTGTTTTAAGTCCTGGAACTAGGTGAAGCTCAAGTTATATGCATTACGTCGTTTAGATGGAGCTTTGGTGCAATTACCAAGGGACCAAGACATGTGCCTGTCTTTGAGGGGTAGCACCATACAATTAAAAAGATGTTGGCAAAGTTAATCATGCATTAGTGATTAGGAATAAGACTAAAAGAATTAGTATAAGAAAATTCTTTGTTAGAAACTTAAAATGTATTTTACATTTAAATCGGAAATTCAAATTAGCTGCGGGACTTGATTGACATGATTTCTTCTGGGACTTGATTGACATAATTATAGTTCTGTGTTTTCAAGGTTTTTGTTCAAATAATTATTGCTTGTATTTTAGTTTTTTTTTCCCCATGAATTGCATATGTTTTTTTAAAAAACTTTTATTGATTTTCTTTGTTAAGCCACTTAAAGCCCCAACACACCTTGACACTTTTCTATGCGTTTCATTACTGGCAACTCGTGACTACAAGAATATTGGTCTTTTTTACTGCTCAGCCGTTGTAGAGGGAAAGGTCCATAAATCATACCTTCTGAGGACAAACATGTTCCATATTCTCAGCTAATCTTCTTCTAAAATTTTGAAGTATTCTTCACCCCGAATATCTGTATTACTTTTTATATTTAAGGGAACCACCCAGCTTCCAAACATGGATTCGGATGTCTGGATGGGATTTTATAAAAACATGAGAGATAACTGAACAATTAGGGAGGACCGGTATCTTACTCCCTACTGCTATATGAGTTGGACAGGTCCAACTCAGATACAAAATGCTCCTAATCGTCGCATTGCAACTACTTCTACACTCATCCTCCTTACAAGTGTAAAAGCGTAGTGTCTACTCTACAGTTAAGGGACTTTCCAGTATCACAAGGATAATTCTATTTAACCTATGTTCTCATTGATTATCTTTTATAGTTGCTTAGTTTTTTATCACGCCTAATATCTAAACTCTATTATGTTCCAGGATCAATACCTTTTCTGCTATGATGCCATTATTGATGAACTGGAAGACCTAATTTCAGATGACAATGGAGAGAAGAATCTGTAGTGGTAATTTTCACTTTGTTGTAAGTTCAATTGGTTGCTGCAGCAAGTAGAAGCACATGCATTGATTTTTCTCAACCTATATACTCTCTATATCTTGGTAGTCATGTCCGAAACAACAAACCCATCAATTTGTTGTCTTAACTTTTTACAGTAGCGATGAGTTAACAAGATCTTGGATTCTTGCTCACAATGGGATATGAAACAGTAGTTATGCTGAAGACACAAATCAGTTGGCTCTACTACAGTTGC</genome_strand>
        <mrna_strand>CCACTAGCACACACCTTTGAAGACTTCTGGGAAATGATAATCCAGCAACGCTGTCCTGTCATTGTGATGCTTACACGATTGGTTGACAATTACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGAAGTGTGGGGACTACTTTCAGGCAGAGGATGGGCCTAGAACATTTGGCAATATATGTATTGTGACAAAATATATGACGAGTGATGCCTCCTTAGTGTTGCGAACTCTGGAGGTGAACTATATTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAAGAACCACCTTTGTGTGTTTTACACATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCCAGAGACACACTTGCTGTTCGTGAGATTCTGAAACGAACGTACAATTTGCCTCTTGGTCTTGGACCAATTGTAGTACACTGCAG.........................................................................................TGCTGGTATCGGTAGGACTGGAACATATTGCACAATCCATAATACCATCCAGAGAATACTGGGTGGAGATATGTCTGCTCTTGACATCGTTAATACAGTAGCCATTTTTAGGTCTCAGCGAATTGGGATGGTCCAGACCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAATACCTTTTCTGCTATGATGCCATTATTGATGAACTGGAAGACCTAATTTCAGATGACAATGGAGAGAAGAATCTGTAGTG....................................................................................................................................................TAGCGATGAGTTAACAAGATCTTGGATTCTTGCTCACAATGGGATATGAAACAGTAGTTATGCTGAAGACACAAATCAGTTGGCTCTACTACAGTTGC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E233446" ref_strand="+" ref_description="SGN-E233446 [cLED-9-P7]">
      <seq>gcctccttagtgttgcgaactctggaggtgaactatattgagtcagaagaaccacctttgtgtgttttacacattcagtatcctgaatggcctgaccatggagttcccagagacacacttgctgttcgtgagattctgaaacgaacgtacaatttgcctcttggtcttggaccaattgtagtacactgcaggtttctctgatcactgaccctgtaaatgtgctttttgaattctgttatttaattgtttgtgtagcttgatgcctcattctcttgtacagtgctggtatcggtaggactggaacatattgcacaatccataataccatccagagaatactgggtggagatatgtctgctcttgacatcgttaatacagtagccatttttaggtctcagcgaattgggatggtccagaccatggatcaataccttttctgctatgatgccattattgatgaactggaagacctaatttcagatgacaatggagagaagaatctgtagtgtagcgatgagttaacaagatcttggattcttgctcacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0080C09.1" temp_strand="-" temp_description="C00HBa0080C09.1  CU928194.8 htgs_phase:3 submitted_to_sgn_as:C00HBa0080C09 sequenced_by:sanger upload_account_name:uk">
        <position start="78420" stop="72117"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78120" g_stop="78079" g_length="42"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="42" r_length="42" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78078" i_stop="74341" i_length="3738">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74340" g_stop="73961" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="43" r_stop="422" r_length="380" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73960" i_stop="72691" i_length="1270">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72690" g_stop="72605" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="423" r_stop="508" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72604" i_stop="72457" i_length="148">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72456" g_stop="72417" g_length="40"/>
          <reference_exon_boundary r_type="cDNA" r_start="509" r_stop="548" r_length="40" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0080C09.1" gen_strand="-" ref_id="SGN-E233446" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0080C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E233446" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78120" e_stop="78079"/>
          <exon e_start="74340" e_stop="73961"/>
          <exon e_start="72690" e_stop="72605"/>
          <exon e_start="72456" e_stop="72417"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCCTCCTTAGTGTTGCGAACTCTGGAGGTGAACTATATTGAGGTTAGTAAATTCTTGTCAGCTCTTGTATGGTACAAGAAATAAACATGAATGAAAATATCTTATCTTGTCATTGACCGTTGAGTTTGGAACCAGCTTAAGAAATCTTTTAACCAATATCTGTGATGGAGGATGGTTGAATTTGACGGTTTCATACTTAATTTCTGCACTGTATGTATACACAGAGTTGGCTTGCATTGTATTACAACAATAGATTTTCAGTGTCCTGTTATAAGCTCCGTTCTATTAAATTTGATGTCCTGAAAAGAAACACCTGATTACCTTAGAAGGAATTTAGTTTTCATTTTTAATATAGATTTTCCGTGTTACTCTTGCACGCTGAATATGGTAGTTTTCATTGTTCACCATGTCTTGTTTCTACTGCTGCCTTACTTTCCGTAACTTACAGAACTTCTTTAAGTGATGCAATGTCCTCTGATCAGTCCAAATCCTTTCTTGTTGGCTATATCTCGAATCGGTCTTGACTTTGGATGGTTCCTTATCCTTGAAGCTGAGTATTATCAGTTTCTTTGTTGTGTTATATACCCAAGATTTGCTTTCTTTTTTCTTTTAACATTCTATTTTTTTTCAGAACTGTCATAAAATCATTGTTCTCAGGGGCTCTACTGAAGTAGATCCTATATCGTTAATTTCTGGGTTTTTCTTCCCCTATGGTTCCTCAAAGTTGATATATAGAACGAATTTTAATGAGAGACAATTAATTGATGCAGTTTCATCTAGGATTGCACTGATTATCTTCATAAAGTTATTTATTTTGGTTCACATCTCCTGATAAAAATGCTTGTACTGAATTTTAAATCTGGTTTAGCAAGAGTGGACTGCTGAATATTATCACGCCCCTTTGAAATAAACTGTGTCAATAAGTTGAACTTGAACAATTTGCAGAAATTTGGTGATTCTTGGGTAAAATCCATAATTCATTCGATAAGGGTAGACCTCATTATATTCTCGCGAACTTCTTTCAATACATGCAATCTTTTCAAAATCTCCATCGTACCTAAACTTGGCAGTTACTTCGTATTCTATTGAAGATTCTGCTTTGAATTCTGAATATCTGCTGTCATCAGGAGCTTATTTGTACCAAGTTCTATCTGTCTTTTCACTACATCCTCCATCAAATCTAAATATAAGATAATTCCATAAGAAATATATTCCTTCAAGTTCTCTATTGTTCATAAATAGTTTGCTTATCATTTTCTGTGCACTCTCTCTGTTCCACATTATATGACACTGTACTATTTGGAGAGTCAGACAGCTTTTCTTTAACCACCAACTCTTTCATGTGCTTTAATCTTATATTTTTAAATTATAAGGAGTTGTAATTTATAGTGCTTTCTATCTAGCTTAATTATTTAAAATCTTATTTTAGCAAGATTAAGAAGTAAGGTTGCCCCTCATACTTTGAGCCAACTCATCCTTTTTCAAATGGAGGGGGCAGTATCTATGAATTTTCTAACGTAAAGATCTTTATATCTTCTGGTATCCAGAGTATATTCAGTCCCTTCCTTCTTTTTAATACATCTCCATAATGCTATTTATCTTTTGCACTTATATTTTTTATATTTCTTATTATCTTTTGTGCTCTCTGGATAATGTACAATGATATGAAGTTACAAGTTAAATTTATAATAATGTACAATGATATGCTCCTACTTTCTCATTTCCTGTACGGCATTTTTCTTTTAGCCTATTTACATATTGATATTTTCTCTTTGTATCTTAATGTTGTCCTTGTTAACAGCTCTACCTTCTTTTACTTACCCCGATCTCGCAGATATTTCCTAATGATGACACCATATCCTCAATCCGGTTAGTTCTTAACAAATTAGTATTCACAATTTGTGAGGGTCGTTCTAGCTATATAAGAAATCCTTGACTAATAATAACATAATAAGATAAATAACTTACTTCAGAAATCAGTAATTGAATAAGTATTTGATCCATTGCATAACCATTTCAGTATTTAAGTTCAAGTAAACCATAGGATATATTCTTGCTGGTTTTCTAACAACTGGTTGATATTTATACCTAGTTTGCGTATCATTTTTTCATGATAAGGTAAAGTATATTATTGACAATTGTGGAAACCCCTATACAAGTAGTACACCAAAAAGGAAGAACCTACACCAAAATATGGTTCTCAAAAGAGACCCAATCCTCTCTACCATTAGGGTGCTTATCATTTTTTCTTAAATCAAATTTTCTTCTATCTGTATCTTCTATCTATATGTTTTCTAATACAAGGATCTTCATCATATCTTCTGTCATCAAGAGTATATTCATAGTGTCATACAGAGTCCTATCTATTTTCCATCAGTGTTGAGCCCATTGCAGATTTCAAAATCATTTTTAACACCTTTAAATCTGCCAATAAGATACCCTTCAAGGAGCTCTTTCCTTTTCTTAATTCTGCTCCCATCTACCTCAGTGGCAAAACTCTGTGATATCGCTGATGCTTCTTTGTTCATTTCTGGTCAACTATTTAACTGGGCTGCTTCAGCATAGAAATATGCTGAGAGGTCTAGTTAGTCTCTTAACCCTTGTCTGTGAATATCTTGTTATTAGCTAAGTCCTGGCACGATAATCACACTTCTTCAGACTCCCTGGTAACTTAGTGTACTCATATATTTCCATACCTGTTATAAGTTTTATGGCACTACATATTCATGTGCTTGTTCCTTCTCACTCAATTTCCTGTAGATCTCCACTGTTCTTTTGGATGCTAGCATAACCTTTGGCAGATCCATAATAGGATCTCTCTGCTGACCGTCAATCTCGACTAAGAATTTCCTTCTCTCGATCTATTCTTAACAGACTAACAGTATTCATACTCCGCAGTGGTTTCTATAATGTCAAGGCATTGATTCCTGGCTGTATAGAAGTCTCTCCCCATTAACTGTTTACGTGCTAAGTTTTCAGTCAATCAGTTTTCTAGCCACCATGCCTTAGGCGTAACTTACTGAGTGATCCCCAAATACAAAGTGCGATGAGAGAGAAAATCCTATTGCTTCTGGAATGTTGAGCTAATTGTGGATGCGGGAGTTCACCTTCAGAGTATCTGAAACTGGATCTTGTGGTTGAAGAGTGTTTCTCATATTAACATGAAGTTGGCTCTGTCCCAGCAGCACATGTAAACACGGAGCGTCTAAGGTCTGTGCAAGATAAGTTTTAGAAAAGCGCTAAGTAGTTTTAGGCTAAGTTGTGTGGACTCTTCACTTTCGATGCCGCACCTGTGTTGGATTCTCCAAAAATACTCTGCTTTTGGAGATTCTGACATGCACCCGTTGGCATTTTTGAAGAGTCCAAGCAACATAGGTTTAGGTGAATGTTTCCCTGGTCAATCCTGCATGTTAGATTAAGGTTATGATCTTTAATAATTATATCTTTATGCCTTTATATTTTACATATGTATATTAAGTACTAGTCAGTAGTGCTGGTGTGATTGCTTATACTCAACCACAACTACACCTCAGTCCCAAACAAATTGGGGTCGGCAAGGATTGCTTGTATTCAATCCCTTCAAATTTGATTTCTCTCTCCCTTGTAAGACCCAGCCCATTATCCCAATATTAGCTGGACCTGATGGGGTGACGTCGTTTTATTCCCCTATCTTCCAGCGCCAATAGTCATCTCTATTTAGACTCAACTTTGATAGATCTTTTGTTCTGTTATGTAGAAGCTAAAATACCCACCTGATCTGCTTCTCTTACTATGTGCCAGTCAGAAGAACCACCTTTGTGTGTTTTACACATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCCAGAGACACACTTGCTGTTCGTGAGATTCTGAAACGAACGTACAATTTGCCTCTTGGTCTTGGACCAATTGTAGTACACTGCAGGTTTCTCTGATCACTGACCCTGTAAATGTGCTTTTTGAATTCTGTTATTTAATTGTTTGTGTAGCTTGATGCCTCATTCTCTTGTACAGTGCTGGTATCGGTAGGACTGGAACATATTGCACAATCCATAATACCATCCAGAGAATACTGGGTGGAGATATGTCTGCTCTTGACATCGTTAATACAGTAGCCATTTTTAGGTCTCAGCGAATTGGGATGGTCCAGACCATGGTACAGCTCCTCCTTTTTTCTTTTTGTCCTTTTCAATTTTCCAATATGCTTCCTTTTTGGCTTTATTTTAACTACCTACTGCTGATTATAAGACTACCGGAGGAGCAATAGTTTCTGATTTTTAAAGTATAAACCACATCCAGCTTTTTTCTGAAAACTTTAGCTGATTGCTGGTATAGAGCATAGTGAGTTCATGTTAGTTAAACATATTGAAAGGGCTAAGCTATCGTTTTAAATCCTTCCGTATACCCTTAGAGTATCAGTGATGCTAAAGGCTTGCTTGAGGTGTGTTTTAAGTCCTGGAACTAGGTGAAGCTCAAGTTATATGCATTACGTCGTTTAGATGGAGCTTTGGTGCAATTACCAAGGGACCAAGACATGTGCCTGTCTTTGAGGGGTAGCACCATACAATTAAAAAGATGTTGGCAAAGTTAATCATGCATTAGTGATTAGGAATAAGACTAAAAGAATTAGTATAAGAAAATTCTTTGTTAGAAACTTAAAATGTATTTTACATTTAAATCGGAAATTCAAATTAGCTGCGGGACTTGATTGACATGATTTCTTCTGGGACTTGATTGACATAATTATAGTTCTGTGTTTTCAAGGTTTTTGTTCAAATAATTATTGCTTGTATTTTAGTTTTTTTTTCCCCATGAATTGCATATGTTTTTTTAAAAAACTTTTATTGATTTTCTTTGTTAAGCCACTTAAAGCCCCAACACACCTTGACACTTTTCTATGCGTTTCATTACTGGCAACTCGTGACTACAAGAATATTGGTCTTTTTTACTGCTCAGCCGTTGTAGAGGGAAAGGTCCATAAATCATACCTTCTGAGGACAAACATGTTCCATATTCTCAGCTAATCTTCTTCTAAAATTTTGAAGTATTCTTCACCCCGAATATCTGTATTACTTTTTATATTTAAGGGAACCACCCAGCTTCCAAACATGGATTCGGATGTCTGGATGGGATTTTATAAAAACATGAGAGATAACTGAACAATTAGGGAGGACCGGTATCTTACTCCCTACTGCTATATGAGTTGGACAGGTCCAACTCAGATACAAAATGCTCCTAATCGTCGCATTGCAACTACTTCTACACTCATCCTCCTTACAAGTGTAAAAGCGTAGTGTCTACTCTACAGTTAAGGGACTTTCCAGTATCACAAGGATAATTCTATTTAACCTATGTTCTCATTGATTATCTTTTATAGTTGCTTAGTTTTTTATCACGCCTAATATCTAAACTCTATTATGTTCCAGGATCAATACCTTTTCTGCTATGATGCCATTATTGATGAACTGGAAGACCTAATTTCAGATGACAATGGAGAGAAGAATCTGTAGTGGTAATTTTCACTTTGTTGTAAGTTCAATTGGTTGCTGCAGCAAGTAGAAGCACATGCATTGATTTTTCTCAACCTATATACTCTCTATATCTTGGTAGTCATGTCCGAAACAACAAACCCATCAATTTGTTGTCTTAACTTTTTACAGTAGCGATGAGTTAACAAGATCTTGGATTCTTGCTCACAAT</genome_strand>
        <mrna_strand>GCCTCCTTAGTGTTGCGAACTCTGGAGGTGAACTATATTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAAGAACCACCTTTGTGTGTTTTACACATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCCAGAGACACACTTGCTGTTCGTGAGATTCTGAAACGAACGTACAATTTGCCTCTTGGTCTTGGACCAATTGTAGTACACTGCAGGTTTCTCTGATCACTGACCCTGTAAATGTGCTTTTTGAATTCTGTTATTTAATTGTTTGTGTAGCTTGATGCCTCATTCTCTTGTACAGTGCTGGTATCGGTAGGACTGGAACATATTGCACAATCCATAATACCATCCAGAGAATACTGGGTGGAGATATGTCTGCTCTTGACATCGTTAATACAGTAGCCATTTTTAGGTCTCAGCGAATTGGGATGGTCCAGACCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAATACCTTTTCTGCTATGATGCCATTATTGATGAACTGGAAGACCTAATTTCAGATGACAATGGAGAGAAGAATCTGTAGTG....................................................................................................................................................TAGCGATGAGTTAACAAGATCTTGGATTCTTGCTCACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E232826" ref_strand="+" ref_description="SGN-E232826 [cLED-8-E7]">
      <seq>ttgttgcaacacaaggtccactagcacacacctttgaagacttctgggaaatgataatccagcaacgctgtcctgtcattgtgatgcttacacgattggttgacaattacaagatggtgaagtgtggggactactttcaggcagaggatgggcctagaacatttggcaatatatgtattgtgacaaaatatatgacgagtgatgcctccttagtgttgcgaactctggaggtgaactatattgagtcagaagaaccacctttgtgtgttttacacattcagtatcctgaatggcctgaccatggagttcccagagacacacttgctgttcgtgagattctgaaacgaacgtacaatttgcctcttggtcttggaccaattgtagtacactgcagtgctggtatcggtaggactggaacatattgcacaatccataataccatccagagaatactgggtggagatatgtctgctcttgacatcgttaatacagtagccatttttaggtctc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0080C09.1" temp_strand="-" temp_description="C00HBa0080C09.1  CU928194.8 htgs_phase:3 submitted_to_sgn_as:C00HBa0080C09 sequenced_by:sanger upload_account_name:uk">
        <position start="80359" stop="73687"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80059" g_stop="79947" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79946" i_stop="78211" i_length="1736">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78210" g_stop="78079" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="245" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78078" i_stop="74341" i_length="3738">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74340" g_stop="74192" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="394" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74191" i_stop="74103" i_length="89">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74102" g_stop="73987" g_length="116"/>
          <reference_exon_boundary r_type="cDNA" r_start="395" r_stop="510" r_length="116" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0080C09.1" gen_strand="-" ref_id="SGN-E232826" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>510</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0080C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E232826" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80059" e_stop="79947"/>
          <exon e_start="78210" e_stop="78079"/>
          <exon e_start="74340" e_stop="74192"/>
          <exon e_start="74102" e_stop="73987"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTGCAACACAAGGTCCACTAGCACACACCTTTGAAGACTTCTGGGAAATGATAATCCAGCAACGCTGTCCTGTCATTGTGATGCTTACACGATTGGTTGACAATTACAAGGTATTCAATTGTTTAGACTAAGGTATACTTGCTTTGCAACCAAAATAAGTAAACATTTTATGACTATAGTCTGATCTATAATTTTCTTTATGGAAGAGAGAACCGACACTTTTACCTTTTTCAGTTTCTTCATTTGTAACCCCCTCCCACACACACACAGAAGTAGACCTGGCATTTTTATGCATTGAAGAAGTTGCAAATGAATCTTTGTTGGGTCTTGAACTTTTATCTTAAGATACAAAACCGAAGCCAGGAAGCCTGGCATGGAAAGGCTCAAGAAAAAAGTATCTTACAAATATACCTTTCATGCGTTCGCGCATAGAGCTTTGGTATAGCACTAAGGGCGCTACACGCTATGTTTGGGTTAGCGCTCGTCATGTGTTTGAACTTTGTTGCGGACAAAAGGTTGGAATTTAAGTGAGGAATAATAGAGGTTTGACCATTACTCAAGGAGTTTCGAACTATTTGCTCATGGACGTGGAAAATTTTCTGGTTATTATAAAAAGATGTTCCTTTTGTTCCTCCATCTTTGCTCCTAAACCTGCGATACTGAAAGGCTAATGTTGGTATTGCTAATTAGCATCCTCATTACTTCATGTGTTCTTTCCTCATTTCTTTTTTGGCTCCAGCGTCAAGCAGGGTGTCATGGGTTTAAGGTTTGTACTTTGCTAAATACTTGTGACTTGAACATATCTTGCTACTCTATACCTATTCTTCTTTCTTCAAATATGCATGAGCTTGAACTTAGATTGAATATTCTACGTGGATATTGAGTAATCTTATGGACATTGCGCATTGTCAAGTTTGTGATCTAGAGATGAAAATATAGATTGGAGGGAGCAATTGTTGCCAGAGGAACTAGCATATGCGGGTGTAGGATCAAATTAGTATTCAATCACAACAACAATAATAACGCCTCAGTCCCAAATAAATTAGGGATCGGCTATATGAATCACTGGCCATGTTTCCATTCTCATCTCAGGACAATATTATACAAATTAGAAATAGTAAAGTAAAATGTACTAAAAGTTCTATATATATTTTTCGTTTAGACTCATCTTGGACCAGTATTATGCAAAATAAAAATAGAAGTAAAATCTACTAGACGTTCTCTATATTTCAAATTATATATAGAATCAGAATTCAAGAAAAATGGTTAGAATTAGAGATTTATCTCTTTCAGCAAAGGAGTTCTATTCATTTTGTTGGGACATCATCTTTTTTGCATCTGTGTTTTGTCTTCTATTTTTCATATTAGATTTCAGGAGCCCCTCTTAGAAGCACACCGAAGCCTGAACAACTTTGTCTTATTCAAATAGAATAGTGTTGTCTCAGGATATTGTGGGCTAGGGCTTCTGAGTTGACGCTGGGTCATATGATCTTTGGAGGAATTAGAGTAGTCTGATGTAGAAAACCCTTTTTACCTTTCTGATATGGTTTGTGCCTCACATCTTGTCTCAATTGCATTTCCAATCTTTACCAGATAAATGGAAGCAATTAAAAGGTAGGAAGATGTGTTCTCGCTGCATGGTCGTTATCCTGAGTCTGTAATTTTTTGACCAGTATCGGAATTGCTATTCCCTACTTTAGTCAGTTTTCAGACTTGTTAACTCTCGAGTCTATTTTAGCATTTTGTTCTAGTGAGTTCCCACTTGAAATATAAGTGATTCCTGTTGACCTATATTCAGTATTAGCAGTTTTATATTTACCTTCTCGTTTGATGAAATCAAATGCAGATGGTGAAGTGTGGGGACTACTTTCAGGCAGAGGATGGGCCTAGAACATTTGGCAATATATGTATTGTGACAAAATATATGACGAGTGATGCCTCCTTAGTGTTGCGAACTCTGGAGGTGAACTATATTGAGGTTAGTAAATTCTTGTCAGCTCTTGTATGGTACAAGAAATAAACATGAATGAAAATATCTTATCTTGTCATTGACCGTTGAGTTTGGAACCAGCTTAAGAAATCTTTTAACCAATATCTGTGATGGAGGATGGTTGAATTTGACGGTTTCATACTTAATTTCTGCACTGTATGTATACACAGAGTTGGCTTGCATTGTATTACAACAATAGATTTTCAGTGTCCTGTTATAAGCTCCGTTCTATTAAATTTGATGTCCTGAAAAGAAACACCTGATTACCTTAGAAGGAATTTAGTTTTCATTTTTAATATAGATTTTCCGTGTTACTCTTGCACGCTGAATATGGTAGTTTTCATTGTTCACCATGTCTTGTTTCTACTGCTGCCTTACTTTCCGTAACTTACAGAACTTCTTTAAGTGATGCAATGTCCTCTGATCAGTCCAAATCCTTTCTTGTTGGCTATATCTCGAATCGGTCTTGACTTTGGATGGTTCCTTATCCTTGAAGCTGAGTATTATCAGTTTCTTTGTTGTGTTATATACCCAAGATTTGCTTTCTTTTTTCTTTTAACATTCTATTTTTTTTCAGAACTGTCATAAAATCATTGTTCTCAGGGGCTCTACTGAAGTAGATCCTATATCGTTAATTTCTGGGTTTTTCTTCCCCTATGGTTCCTCAAAGTTGATATATAGAACGAATTTTAATGAGAGACAATTAATTGATGCAGTTTCATCTAGGATTGCACTGATTATCTTCATAAAGTTATTTATTTTGGTTCACATCTCCTGATAAAAATGCTTGTACTGAATTTTAAATCTGGTTTAGCAAGAGTGGACTGCTGAATATTATCACGCCCCTTTGAAATAAACTGTGTCAATAAGTTGAACTTGAACAATTTGCAGAAATTTGGTGATTCTTGGGTAAAATCCATAATTCATTCGATAAGGGTAGACCTCATTATATTCTCGCGAACTTCTTTCAATACATGCAATCTTTTCAAAATCTCCATCGTACCTAAACTTGGCAGTTACTTCGTATTCTATTGAAGATTCTGCTTTGAATTCTGAATATCTGCTGTCATCAGGAGCTTATTTGTACCAAGTTCTATCTGTCTTTTCACTACATCCTCCATCAAATCTAAATATAAGATAATTCCATAAGAAATATATTCCTTCAAGTTCTCTATTGTTCATAAATAGTTTGCTTATCATTTTCTGTGCACTCTCTCTGTTCCACATTATATGACACTGTACTATTTGGAGAGTCAGACAGCTTTTCTTTAACCACCAACTCTTTCATGTGCTTTAATCTTATATTTTTAAATTATAAGGAGTTGTAATTTATAGTGCTTTCTATCTAGCTTAATTATTTAAAATCTTATTTTAGCAAGATTAAGAAGTAAGGTTGCCCCTCATACTTTGAGCCAACTCATCCTTTTTCAAATGGAGGGGGCAGTATCTATGAATTTTCTAACGTAAAGATCTTTATATCTTCTGGTATCCAGAGTATATTCAGTCCCTTCCTTCTTTTTAATACATCTCCATAATGCTATTTATCTTTTGCACTTATATTTTTTATATTTCTTATTATCTTTTGTGCTCTCTGGATAATGTACAATGATATGAAGTTACAAGTTAAATTTATAATAATGTACAATGATATGCTCCTACTTTCTCATTTCCTGTACGGCATTTTTCTTTTAGCCTATTTACATATTGATATTTTCTCTTTGTATCTTAATGTTGTCCTTGTTAACAGCTCTACCTTCTTTTACTTACCCCGATCTCGCAGATATTTCCTAATGATGACACCATATCCTCAATCCGGTTAGTTCTTAACAAATTAGTATTCACAATTTGTGAGGGTCGTTCTAGCTATATAAGAAATCCTTGACTAATAATAACATAATAAGATAAATAACTTACTTCAGAAATCAGTAATTGAATAAGTATTTGATCCATTGCATAACCATTTCAGTATTTAAGTTCAAGTAAACCATAGGATATATTCTTGCTGGTTTTCTAACAACTGGTTGATATTTATACCTAGTTTGCGTATCATTTTTTCATGATAAGGTAAAGTATATTATTGACAATTGTGGAAACCCCTATACAAGTAGTACACCAAAAAGGAAGAACCTACACCAAAATATGGTTCTCAAAAGAGACCCAATCCTCTCTACCATTAGGGTGCTTATCATTTTTTCTTAAATCAAATTTTCTTCTATCTGTATCTTCTATCTATATGTTTTCTAATACAAGGATCTTCATCATATCTTCTGTCATCAAGAGTATATTCATAGTGTCATACAGAGTCCTATCTATTTTCCATCAGTGTTGAGCCCATTGCAGATTTCAAAATCATTTTTAACACCTTTAAATCTGCCAATAAGATACCCTTCAAGGAGCTCTTTCCTTTTCTTAATTCTGCTCCCATCTACCTCAGTGGCAAAACTCTGTGATATCGCTGATGCTTCTTTGTTCATTTCTGGTCAACTATTTAACTGGGCTGCTTCAGCATAGAAATATGCTGAGAGGTCTAGTTAGTCTCTTAACCCTTGTCTGTGAATATCTTGTTATTAGCTAAGTCCTGGCACGATAATCACACTTCTTCAGACTCCCTGGTAACTTAGTGTACTCATATATTTCCATACCTGTTATAAGTTTTATGGCACTACATATTCATGTGCTTGTTCCTTCTCACTCAATTTCCTGTAGATCTCCACTGTTCTTTTGGATGCTAGCATAACCTTTGGCAGATCCATAATAGGATCTCTCTGCTGACCGTCAATCTCGACTAAGAATTTCCTTCTCTCGATCTATTCTTAACAGACTAACAGTATTCATACTCCGCAGTGGTTTCTATAATGTCAAGGCATTGATTCCTGGCTGTATAGAAGTCTCTCCCCATTAACTGTTTACGTGCTAAGTTTTCAGTCAATCAGTTTTCTAGCCACCATGCCTTAGGCGTAACTTACTGAGTGATCCCCAAATACAAAGTGCGATGAGAGAGAAAATCCTATTGCTTCTGGAATGTTGAGCTAATTGTGGATGCGGGAGTTCACCTTCAGAGTATCTGAAACTGGATCTTGTGGTTGAAGAGTGTTTCTCATATTAACATGAAGTTGGCTCTGTCCCAGCAGCACATGTAAACACGGAGCGTCTAAGGTCTGTGCAAGATAAGTTTTAGAAAAGCGCTAAGTAGTTTTAGGCTAAGTTGTGTGGACTCTTCACTTTCGATGCCGCACCTGTGTTGGATTCTCCAAAAATACTCTGCTTTTGGAGATTCTGACATGCACCCGTTGGCATTTTTGAAGAGTCCAAGCAACATAGGTTTAGGTGAATGTTTCCCTGGTCAATCCTGCATGTTAGATTAAGGTTATGATCTTTAATAATTATATCTTTATGCCTTTATATTTTACATATGTATATTAAGTACTAGTCAGTAGTGCTGGTGTGATTGCTTATACTCAACCACAACTACACCTCAGTCCCAAACAAATTGGGGTCGGCAAGGATTGCTTGTATTCAATCCCTTCAAATTTGATTTCTCTCTCCCTTGTAAGACCCAGCCCATTATCCCAATATTAGCTGGACCTGATGGGGTGACGTCGTTTTATTCCCCTATCTTCCAGCGCCAATAGTCATCTCTATTTAGACTCAACTTTGATAGATCTTTTGTTCTGTTATGTAGAAGCTAAAATACCCACCTGATCTGCTTCTCTTACTATGTGCCAGTCAGAAGAACCACCTTTGTGTGTTTTACACATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCCAGAGACACACTTGCTGTTCGTGAGATTCTGAAACGAACGTACAATTTGCCTCTTGGTCTTGGACCAATTGTAGTACACTGCAGGTTTCTCTGATCACTGACCCTGTAAATGTGCTTTTTGAATTCTGTTATTTAATTGTTTGTGTAGCTTGATGCCTCATTCTCTTGTACAGTGCTGGTATCGGTAGGACTGGAACATATTGCACAATCCATAATACCATCCAGAGAATACTGGGTGGAGATATGTCTGCTCTTGACATCGTTAATACAGTAGCCATTTTTAGGTCTC</genome_strand>
        <mrna_strand>TTGTTGCAACACAAGGTCCACTAGCACACACCTTTGAAGACTTCTGGGAAATGATAATCCAGCAACGCTGTCCTGTCATTGTGATGCTTACACGATTGGTTGACAATTACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGAAGTGTGGGGACTACTTTCAGGCAGAGGATGGGCCTAGAACATTTGGCAATATATGTATTGTGACAAAATATATGACGAGTGATGCCTCCTTAGTGTTGCGAACTCTGGAGGTGAACTATATTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAAGAACCACCTTTGTGTGTTTTACACATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCCAGAGACACACTTGCTGTTCGTGAGATTCTGAAACGAACGTACAATTTGCCTCTTGGTCTTGGACCAATTGTAGTACACTGCAG.........................................................................................TGCTGGTATCGGTAGGACTGGAACATATTGCACAATCCATAATACCATCCAGAGAATACTGGGTGGAGATATGTCTGCTCTTGACATCGTTAATACAGTAGCCATTTTTAGGTCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E262568" ref_strand="+" ref_description="SGN-E262568 [cLEG-63-I20]">
      <seq>gcatttaagcagaaaaggtgtcactctccggacaaaattgcctcagagttctccactttgcaggaaaataggctgaaagcttcagaaatgaagagtagatgcttggtggctttggacagcacaaacatcagcaagaatcgttatactgatgtcatcccatttgacaataacagggttgttttggacccatgtaaagactacagaccgtcagctaagggatatatcaatgcaagctttatagagatatctgaaggggtgtctcggtttgttgcaacacaaggtccactagcacacacctttgaagacttctgggaaatgataatccagcaacgctgtcctgtcattgtgatgcttacacgattggttgacaattacaagatggtgaagtgtggggactactttcaggcagaggatgggcctagaacatttggcaatatatgtattgtgacaaaatatatgacgagtgatgcctccttagtgttgcgaactctggaggtgaactatattgagtcagaagaaccacctttgtgtgttttacacattcagtatcctgaatggcctgaccatggagttcccagagacacacttgctgttcgtgagattctgaaacgaacgtacaatttgcctcttggtcttggaccaattgtagtacactgcagtgctggtatcggtaggactggaacatattgcacaatccataataccatccagagaatactgggtggagatatgtctgctcttga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0080C09.1" temp_strand="-" temp_description="C00HBa0080C09.1  CU928194.8 htgs_phase:3 submitted_to_sgn_as:C00HBa0080C09 sequenced_by:sanger upload_account_name:uk">
        <position start="83679" stop="73719"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83379" g_stop="83317" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83316" i_stop="80476" i_length="2841">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80475" g_stop="80379" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="160" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80378" i_stop="80291" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80290" g_stop="80208" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="243" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80207" i_stop="80082" i_length="126">
            <donor d_prob="0.846" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80081" g_stop="79947" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="378" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79946" i_stop="78211" i_length="1736">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78210" g_stop="78079" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="510" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78078" i_stop="74341" i_length="3738">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74340" g_stop="74192" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="511" r_stop="659" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="74191" i_stop="74103" i_length="89">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="74102" g_stop="74019" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="660" r_stop="743" r_length="84" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0080C09.1" gen_strand="-" ref_id="SGN-E262568" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>743</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0080C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E262568" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83379" e_stop="83317"/>
          <exon e_start="80475" e_stop="80379"/>
          <exon e_start="80290" e_stop="80208"/>
          <exon e_start="80081" e_stop="79947"/>
          <exon e_start="78210" e_stop="78079"/>
          <exon e_start="74340" e_stop="74192"/>
          <exon e_start="74102" e_stop="74019"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTAAGCAGAAAAGGTGTCACTCTCCGGACAAAATTGCCTCAGAGTTCTCCACTTTGCAGGTTTCCTTTTTCTTTTTTCCTGTTATTTTGTGGCTTTCGGCTATTCATTTGAAAACCTGTGTGGCAATATTTTGATGCTTAGTTTGAAGTTTACCGTAATGTTCTTGCAAAAAGGATACTAAGATATAGTATTATACTTGTACATTCAGCTGATATTAGCAGCATCTTAGTTTACTTGTATTAGTTACAGTTAGCTGTTAGCTTAACCAACAATTAGTTAGAGATATTTTTAGCCAGCTAGAGACACGGATATAAACACAACGTACAAAAATTGGAGCTCAGATTGAGCCCTAATTGTCCCTTGCTTTACATTTTAGAGCCTGTTTGGCTCAGCTTAAAAGCTGGTCAAACTACTTGCTGGTTTTTGACTTATTTAGCTGTTTGGCAATACTCAAAACAGCTTATTTTAAGTTAAAAAAAACTTATTTTAAGCCAAAAGTTAAAAGCTGGGGTAGGGGTGCTTTTTTATTTTTAGCTTATAAGCTGTTTTAAGTTGACCACATTTTTATCTTTTTGTGCTTAATATTTTTATACAATCTCCAAATTACCCATATAACCCTAACATTTCTTTCTTTCATTTATCCTTTTCACGTTTGACATAACAACTGCTTATTTTAAAAATAAGTTTCAGCACTTTTAAAAGTACTTTTTTAAAGCTGCTTTTATTAAGCCCATCCAAACGGGCCCTTAATATGGTGTCAGAGCTCTAGAGTATTTCCTTGAGCTGTTCTTCAATTGGCACACCTGGTGTTAATTTCTGTAGAAATAGAAGAAATTGAACTCTTGTATCTTCCAAATCAGCTGTTTTTGTCTTCAACTTTATCAATCATGTTATTCCTCATGGCTATGATCAGAATGAGCAATCCACTTTTAATCCAATTAGTCTCTTTACGTGCATTTTTCTGACTGTAGTAACCTTCCTTTTGATGGGATACGGTACAAATACTTTAGAAGAGGTTACTAGGATCTTTTTCCGTCAAGAATAAATTAGATCTTATCCTTGGAGACTGTGAAAGACCAGGTACGGAACCCCACAACTTGATCAGTTAAAGAGGTTCGATGATATGGTCAATTTGTGGATTTTGAATGCTCTTGCTAAAGAAGTTGCTGATAGTGTGGAATATGTCAAGGAGTCAGTTGAATTATGGAAGGAATCAGAAGATCACGATCAAACAAATGGTGCTAAGTTGTACCTAATTGAGAACGAGTTAATGACAGGACTCAAGGGTGCTTGATTACTAGCTATTACACAAAAATGAAGAAACTCTGGGAGGAATTGAACACCTTGAGTGCTAAAACACAAGATAGTTTTCAGTACACTTGTGATTCAAGGAAAATATGCATAAGGCAGAACAAGATAAGAGACTAACACAATTTCTCATGGGCTTCAATAGGTGTATATATTGAGAGGAAGCATACTTGTGATAAATTCACTGCTTCCGTAACACATGCTTTTTCCCTGCTGATTCAGGAGGAAAAACAAAAAGAGCTTCGGTCTAATAATAAGTTGGATGTACTAAGGAGTAAGGACAAGTGCTATAAACTGCATGGATATTCTCAAAATTCCAATCAAAGCCTAAAGGATTTCAATCAGAATTCTAAGATCAACAAGGGAAAAAGAACTGTGGCAAAATGTGCATTGTATACCAGTGGAAATGATATATGTTAAGGTAAAGGAACCTAACCATTAAGATGAGAATCAAAATGTCAGCTTCACTAAGTAGCAATATGGATAAATTGTTTATCTGTTACAACATTTTCAATTTGGCAATGCAGGAGAGAACTCAAACCACTTTATCTCACTACTGAAGTTGTGAACTTATCCGATATTATAGCTTGTTCAATTTCTATTGAATTTAAGAAAGTTCCATGTAAATGTTTCAAAACAAGGGCTGACTCATGAAATTTTAGATTCATGAGCCTCAAACCACATGACGTTCTACTCATTAGAACCCTATTATCAAACATTAGACTCAGTTTCTGTAGAAAAAATAGATGGCTGGCATCTCACCAACAGGGATGGAAAGAACTTCGGGCTTTACCTGGTATGTTACCAGACACATCCTGTTAAGGTTTCCCACTTTGGTAATCTTACCCAATTTTATTTTATTTATATTGTTAAGGTTCTCTCTTTTATGTTTATTTTAAAGAAAATTAGAACTTCACCATATGCTTTATTGGTCACCATTCCAAATGGTTATAAAGTGAAGGTGATAGAAATTGGAAATGTGACAATTGCACCCAACATCACTTTGCACAAAGTGCTGTTTGTGCCTCTCATATACATATTATTTTTATTCATTTCTGATGGTATCCTTAATGCGTTGTCTCATTTACTAACACTTAATGCCAACTGCATACCCCATCAATGAAGAGATCTTTGGAGATCGGTAAGGTTAAAAGACCTGTTTCTTTTTTTTTTTTTTGGGATTGCTTAAGAGTGATACTTATGTTTATGCAGTCAATTCTTGTACTTCCATTTTTTCTTGTGATATAAATAATATACAATATCATCCCCATATATGTCATCCTTATCCAATTATAAAATAGAAGTCCTGAAACCAAAAAAATTGGAATATTTTTGAGGTAAAACGGGGTGAATCACTTCTGAATTTCCTCGCCGAAGCAACTTTAATAGTTCTAGGTACAGAAAATGATAGCATAAATTACAAGATTTTTTTAAGGAAAAACATTCATCTATCTGATTTATATCAGCGATGTTCCCTTATAGATGAGAAGTTTTTAGTCTATTGTTGTTTTTTTACTCCCTGTTATTTCGTTTCCTCTGATGTTATTCTGCTTCATTTGATGCCATGCTAAATTTAAGCTCCTATGGTTCAGGAAAATAGGCTGAAAGCTTCAGAAATGAAGAGTAGATGCTTGGTGGCTTTGGACAGCACAAACATCAGCAAGAATCGTTATACTGATGTCATCCCATGTATGCTAATCAGTTGTCTGTTTGTTTTCTTTGATTTTATATTGCATTATTTTTTCGAAATAATTGGATCAAGCTTCATTGCTCTCAGTTGACAATAACAGGGTTGTTTTGGACCCATGTAAAGACTACAGACCGTCAGCTAAGGGATATATCAATGCAAGCTTTATAGAGGTGGATTCCTACATCCTTCACTTGGAATTATTTAAAAAGCCACTTCCCCTACTTGCTTAGCAAACAATATTGAGTTACAACGCAAAATCTGCTTCTGACCTTTTATACTGCTCTTTTTGATTGAAGATATCTGAAGGGGTGTCTCGGTTTGTTGCAACACAAGGTCCACTAGCACACACCTTTGAAGACTTCTGGGAAATGATAATCCAGCAACGCTGTCCTGTCATTGTGATGCTTACACGATTGGTTGACAATTACAAGGTATTCAATTGTTTAGACTAAGGTATACTTGCTTTGCAACCAAAATAAGTAAACATTTTATGACTATAGTCTGATCTATAATTTTCTTTATGGAAGAGAGAACCGACACTTTTACCTTTTTCAGTTTCTTCATTTGTAACCCCCTCCCACACACACACAGAAGTAGACCTGGCATTTTTATGCATTGAAGAAGTTGCAAATGAATCTTTGTTGGGTCTTGAACTTTTATCTTAAGATACAAAACCGAAGCCAGGAAGCCTGGCATGGAAAGGCTCAAGAAAAAAGTATCTTACAAATATACCTTTCATGCGTTCGCGCATAGAGCTTTGGTATAGCACTAAGGGCGCTACACGCTATGTTTGGGTTAGCGCTCGTCATGTGTTTGAACTTTGTTGCGGACAAAAGGTTGGAATTTAAGTGAGGAATAATAGAGGTTTGACCATTACTCAAGGAGTTTCGAACTATTTGCTCATGGACGTGGAAAATTTTCTGGTTATTATAAAAAGATGTTCCTTTTGTTCCTCCATCTTTGCTCCTAAACCTGCGATACTGAAAGGCTAATGTTGGTATTGCTAATTAGCATCCTCATTACTTCATGTGTTCTTTCCTCATTTCTTTTTTGGCTCCAGCGTCAAGCAGGGTGTCATGGGTTTAAGGTTTGTACTTTGCTAAATACTTGTGACTTGAACATATCTTGCTACTCTATACCTATTCTTCTTTCTTCAAATATGCATGAGCTTGAACTTAGATTGAATATTCTACGTGGATATTGAGTAATCTTATGGACATTGCGCATTGTCAAGTTTGTGATCTAGAGATGAAAATATAGATTGGAGGGAGCAATTGTTGCCAGAGGAACTAGCATATGCGGGTGTAGGATCAAATTAGTATTCAATCACAACAACAATAATAACGCCTCAGTCCCAAATAAATTAGGGATCGGCTATATGAATCACTGGCCATGTTTCCATTCTCATCTCAGGACAATATTATACAAATTAGAAATAGTAAAGTAAAATGTACTAAAAGTTCTATATATATTTTTCGTTTAGACTCATCTTGGACCAGTATTATGCAAAATAAAAATAGAAGTAAAATCTACTAGACGTTCTCTATATTTCAAATTATATATAGAATCAGAATTCAAGAAAAATGGTTAGAATTAGAGATTTATCTCTTTCAGCAAAGGAGTTCTATTCATTTTGTTGGGACATCATCTTTTTTGCATCTGTGTTTTGTCTTCTATTTTTCATATTAGATTTCAGGAGCCCCTCTTAGAAGCACACCGAAGCCTGAACAACTTTGTCTTATTCAAATAGAATAGTGTTGTCTCAGGATATTGTGGGCTAGGGCTTCTGAGTTGACGCTGGGTCATATGATCTTTGGAGGAATTAGAGTAGTCTGATGTAGAAAACCCTTTTTACCTTTCTGATATGGTTTGTGCCTCACATCTTGTCTCAATTGCATTTCCAATCTTTACCAGATAAATGGAAGCAATTAAAAGGTAGGAAGATGTGTTCTCGCTGCATGGTCGTTATCCTGAGTCTGTAATTTTTTGACCAGTATCGGAATTGCTATTCCCTACTTTAGTCAGTTTTCAGACTTGTTAACTCTCGAGTCTATTTTAGCATTTTGTTCTAGTGAGTTCCCACTTGAAATATAAGTGATTCCTGTTGACCTATATTCAGTATTAGCAGTTTTATATTTACCTTCTCGTTTGATGAAATCAAATGCAGATGGTGAAGTGTGGGGACTACTTTCAGGCAGAGGATGGGCCTAGAACATTTGGCAATATATGTATTGTGACAAAATATATGACGAGTGATGCCTCCTTAGTGTTGCGAACTCTGGAGGTGAACTATATTGAGGTTAGTAAATTCTTGTCAGCTCTTGTATGGTACAAGAAATAAACATGAATGAAAATATCTTATCTTGTCATTGACCGTTGAGTTTGGAACCAGCTTAAGAAATCTTTTAACCAATATCTGTGATGGAGGATGGTTGAATTTGACGGTTTCATACTTAATTTCTGCACTGTATGTATACACAGAGTTGGCTTGCATTGTATTACAACAATAGATTTTCAGTGTCCTGTTATAAGCTCCGTTCTATTAAATTTGATGTCCTGAAAAGAAACACCTGATTACCTTAGAAGGAATTTAGTTTTCATTTTTAATATAGATTTTCCGTGTTACTCTTGCACGCTGAATATGGTAGTTTTCATTGTTCACCATGTCTTGTTTCTACTGCTGCCTTACTTTCCGTAACTTACAGAACTTCTTTAAGTGATGCAATGTCCTCTGATCAGTCCAAATCCTTTCTTGTTGGCTATATCTCGAATCGGTCTTGACTTTGGATGGTTCCTTATCCTTGAAGCTGAGTATTATCAGTTTCTTTGTTGTGTTATATACCCAAGATTTGCTTTCTTTTTTCTTTTAACATTCTATTTTTTTTCAGAACTGTCATAAAATCATTGTTCTCAGGGGCTCTACTGAAGTAGATCCTATATCGTTAATTTCTGGGTTTTTCTTCCCCTATGGTTCCTCAAAGTTGATATATAGAACGAATTTTAATGAGAGACAATTAATTGATGCAGTTTCATCTAGGATTGCACTGATTATCTTCATAAAGTTATTTATTTTGGTTCACATCTCCTGATAAAAATGCTTGTACTGAATTTTAAATCTGGTTTAGCAAGAGTGGACTGCTGAATATTATCACGCCCCTTTGAAATAAACTGTGTCAATAAGTTGAACTTGAACAATTTGCAGAAATTTGGTGATTCTTGGGTAAAATCCATAATTCATTCGATAAGGGTAGACCTCATTATATTCTCGCGAACTTCTTTCAATACATGCAATCTTTTCAAAATCTCCATCGTACCTAAACTTGGCAGTTACTTCGTATTCTATTGAAGATTCTGCTTTGAATTCTGAATATCTGCTGTCATCAGGAGCTTATTTGTACCAAGTTCTATCTGTCTTTTCACTACATCCTCCATCAAATCTAAATATAAGATAATTCCATAAGAAATATATTCCTTCAAGTTCTCTATTGTTCATAAATAGTTTGCTTATCATTTTCTGTGCACTCTCTCTGTTCCACATTATATGACACTGTACTATTTGGAGAGTCAGACAGCTTTTCTTTAACCACCAACTCTTTCATGTGCTTTAATCTTATATTTTTAAATTATAAGGAGTTGTAATTTATAGTGCTTTCTATCTAGCTTAATTATTTAAAATCTTATTTTAGCAAGATTAAGAAGTAAGGTTGCCCCTCATACTTTGAGCCAACTCATCCTTTTTCAAATGGAGGGGGCAGTATCTATGAATTTTCTAACGTAAAGATCTTTATATCTTCTGGTATCCAGAGTATATTCAGTCCCTTCCTTCTTTTTAATACATCTCCATAATGCTATTTATCTTTTGCACTTATATTTTTTATATTTCTTATTATCTTTTGTGCTCTCTGGATAATGTACAATGATATGAAGTTACAAGTTAAATTTATAATAATGTACAATGATATGCTCCTACTTTCTCATTTCCTGTACGGCATTTTTCTTTTAGCCTATTTACATATTGATATTTTCTCTTTGTATCTTAATGTTGTCCTTGTTAACAGCTCTACCTTCTTTTACTTACCCCGATCTCGCAGATATTTCCTAATGATGACACCATATCCTCAATCCGGTTAGTTCTTAACAAATTAGTATTCACAATTTGTGAGGGTCGTTCTAGCTATATAAGAAATCCTTGACTAATAATAACATAATAAGATAAATAACTTACTTCAGAAATCAGTAATTGAATAAGTATTTGATCCATTGCATAACCATTTCAGTATTTAAGTTCAAGTAAACCATAGGATATATTCTTGCTGGTTTTCTAACAACTGGTTGATATTTATACCTAGTTTGCGTATCATTTTTTCATGATAAGGTAAAGTATATTATTGACAATTGTGGAAACCCCTATACAAGTAGTACACCAAAAAGGAAGAACCTACACCAAAATATGGTTCTCAAAAGAGACCCAATCCTCTCTACCATTAGGGTGCTTATCATTTTTTCTTAAATCAAATTTTCTTCTATCTGTATCTTCTATCTATATGTTTTCTAATACAAGGATCTTCATCATATCTTCTGTCATCAAGAGTATATTCATAGTGTCATACAGAGTCCTATCTATTTTCCATCAGTGTTGAGCCCATTGCAGATTTCAAAATCATTTTTAACACCTTTAAATCTGCCAATAAGATACCCTTCAAGGAGCTCTTTCCTTTTCTTAATTCTGCTCCCATCTACCTCAGTGGCAAAACTCTGTGATATCGCTGATGCTTCTTTGTTCATTTCTGGTCAACTATTTAACTGGGCTGCTTCAGCATAGAAATATGCTGAGAGGTCTAGTTAGTCTCTTAACCCTTGTCTGTGAATATCTTGTTATTAGCTAAGTCCTGGCACGATAATCACACTTCTTCAGACTCCCTGGTAACTTAGTGTACTCATATATTTCCATACCTGTTATAAGTTTTATGGCACTACATATTCATGTGCTTGTTCCTTCTCACTCAATTTCCTGTAGATCTCCACTGTTCTTTTGGATGCTAGCATAACCTTTGGCAGATCCATAATAGGATCTCTCTGCTGACCGTCAATCTCGACTAAGAATTTCCTTCTCTCGATCTATTCTTAACAGACTAACAGTATTCATACTCCGCAGTGGTTTCTATAATGTCAAGGCATTGATTCCTGGCTGTATAGAAGTCTCTCCCCATTAACTGTTTACGTGCTAAGTTTTCAGTCAATCAGTTTTCTAGCCACCATGCCTTAGGCGTAACTTACTGAGTGATCCCCAAATACAAAGTGCGATGAGAGAGAAAATCCTATTGCTTCTGGAATGTTGAGCTAATTGTGGATGCGGGAGTTCACCTTCAGAGTATCTGAAACTGGATCTTGTGGTTGAAGAGTGTTTCTCATATTAACATGAAGTTGGCTCTGTCCCAGCAGCACATGTAAACACGGAGCGTCTAAGGTCTGTGCAAGATAAGTTTTAGAAAAGCGCTAAGTAGTTTTAGGCTAAGTTGTGTGGACTCTTCACTTTCGATGCCGCACCTGTGTTGGATTCTCCAAAAATACTCTGCTTTTGGAGATTCTGACATGCACCCGTTGGCATTTTTGAAGAGTCCAAGCAACATAGGTTTAGGTGAATGTTTCCCTGGTCAATCCTGCATGTTAGATTAAGGTTATGATCTTTAATAATTATATCTTTATGCCTTTATATTTTACATATGTATATTAAGTACTAGTCAGTAGTGCTGGTGTGATTGCTTATACTCAACCACAACTACACCTCAGTCCCAAACAAATTGGGGTCGGCAAGGATTGCTTGTATTCAATCCCTTCAAATTTGATTTCTCTCTCCCTTGTAAGACCCAGCCCATTATCCCAATATTAGCTGGACCTGATGGGGTGACGTCGTTTTATTCCCCTATCTTCCAGCGCCAATAGTCATCTCTATTTAGACTCAACTTTGATAGATCTTTTGTTCTGTTATGTAGAAGCTAAAATACCCACCTGATCTGCTTCTCTTACTATGTGCCAGTCAGAAGAACCACCTTTGTGTGTTTTACACATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCCAGAGACACACTTGCTGTTCGTGAGATTCTGAAACGAACGTACAATTTGCCTCTTGGTCTTGGACCAATTGTAGTACACTGCAGGTTTCTCTGATCACTGACCCTGTAAATGTGCTTTTTGAATTCTGTTATTTAATTGTTTGTGTAGCTTGATGCCTCATTCTCTTGTACAGTGCTGGTATCGGTAGGACTGGAACATATTGCACAATCCATAATACCATCCAGAGAATACTGGGTGGAGATATGTCTGCTCTTGA</genome_strand>
        <mrna_strand>GCATTTAAGCAGAAAAGGTGTCACTCTCCGGACAAAATTGCCTCAGAGTTCTCCACTTTGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATAGGCTGAAAGCTTCAGAAATGAAGAGTAGATGCTTGGTGGCTTTGGACAGCACAAACATCAGCAAGAATCGTTATACTGATGTCATCCCAT........................................................................................TTGACAATAACAGGGTTGTTTTGGACCCATGTAAAGACTACAGACCGTCAGCTAAGGGATATATCAATGCAAGCTTTATAGAG..............................................................................................................................ATATCTGAAGGGGTGTCTCGGTTTGTTGCAACACAAGGTCCACTAGCACACACCTTTGAAGACTTCTGGGAAATGATAATCCAGCAACGCTGTCCTGTCATTGTGATGCTTACACGATTGGTTGACAATTACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGAAGTGTGGGGACTACTTTCAGGCAGAGGATGGGCCTAGAACATTTGGCAATATATGTATTGTGACAAAATATATGACGAGTGATGCCTCCTTAGTGTTGCGAACTCTGGAGGTGAACTATATTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAAGAACCACCTTTGTGTGTTTTACACATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCCAGAGACACACTTGCTGTTCGTGAGATTCTGAAACGAACGTACAATTTGCCTCTTGGTCTTGGACCAATTGTAGTACACTGCAG.........................................................................................TGCTGGTATCGGTAGGACTGGAACATATTGCACAATCCATAATACCATCCAGAGAATACTGGGTGGAGATATGTCTGCTCTTGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E237775" ref_strand="+" ref_description="SGN-E237775 [cLED-18-E1]">
      <seq>acctttgaagacttctgggaaatgataatccagcaacgctgtcctgtcattgtgatgcttacacgattggttgacaattacaagatggtgaagtgtggggactactttcaggcagaggatgggcctagaacatttggcaatatatgtattgtgacaaaatatatgacgagtgatgcctccttagtgttgcgaactctggaggtgaactatattgagtcagaagaaccacctttgtgtgttttacacattcagtatcctgaatggcctgaccatggagttcccagagacacacttgctgttcgtgagattctgaaacgaacgtacaatttgcctcttggtcttggaccaattgtagtacactgcagtgctggtatcggtaggactggaacatattgcacaatccataataccatccagagaatactgggtggagatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0080C09.1" temp_strand="-" temp_description="C00HBa0080C09.1  CU928194.8 htgs_phase:3 submitted_to_sgn_as:C00HBa0080C09 sequenced_by:sanger upload_account_name:uk">
        <position start="80330" stop="73730"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80030" g_stop="79947" g_length="84"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="84" r_length="84" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79946" i_stop="78211" i_length="1736">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78210" g_stop="78079" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="85" r_stop="216" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78078" i_stop="74341" i_length="3738">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74340" g_stop="74192" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="217" r_stop="365" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74191" i_stop="74103" i_length="89">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74102" g_stop="74030" g_length="73"/>
          <reference_exon_boundary r_type="cDNA" r_start="366" r_stop="438" r_length="73" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0080C09.1" gen_strand="-" ref_id="SGN-E237775" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>438</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0080C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E237775" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80030" e_stop="79947"/>
          <exon e_start="78210" e_stop="78079"/>
          <exon e_start="74340" e_stop="74192"/>
          <exon e_start="74102" e_stop="74030"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>ACCTTTGAAGACTTCTGGGAAATGATAATCCAGCAACGCTGTCCTGTCATTGTGATGCTTACACGATTGGTTGACAATTACAAGGTATTCAATTGTTTAGACTAAGGTATACTTGCTTTGCAACCAAAATAAGTAAACATTTTATGACTATAGTCTGATCTATAATTTTCTTTATGGAAGAGAGAACCGACACTTTTACCTTTTTCAGTTTCTTCATTTGTAACCCCCTCCCACACACACACAGAAGTAGACCTGGCATTTTTATGCATTGAAGAAGTTGCAAATGAATCTTTGTTGGGTCTTGAACTTTTATCTTAAGATACAAAACCGAAGCCAGGAAGCCTGGCATGGAAAGGCTCAAGAAAAAAGTATCTTACAAATATACCTTTCATGCGTTCGCGCATAGAGCTTTGGTATAGCACTAAGGGCGCTACACGCTATGTTTGGGTTAGCGCTCGTCATGTGTTTGAACTTTGTTGCGGACAAAAGGTTGGAATTTAAGTGAGGAATAATAGAGGTTTGACCATTACTCAAGGAGTTTCGAACTATTTGCTCATGGACGTGGAAAATTTTCTGGTTATTATAAAAAGATGTTCCTTTTGTTCCTCCATCTTTGCTCCTAAACCTGCGATACTGAAAGGCTAATGTTGGTATTGCTAATTAGCATCCTCATTACTTCATGTGTTCTTTCCTCATTTCTTTTTTGGCTCCAGCGTCAAGCAGGGTGTCATGGGTTTAAGGTTTGTACTTTGCTAAATACTTGTGACTTGAACATATCTTGCTACTCTATACCTATTCTTCTTTCTTCAAATATGCATGAGCTTGAACTTAGATTGAATATTCTACGTGGATATTGAGTAATCTTATGGACATTGCGCATTGTCAAGTTTGTGATCTAGAGATGAAAATATAGATTGGAGGGAGCAATTGTTGCCAGAGGAACTAGCATATGCGGGTGTAGGATCAAATTAGTATTCAATCACAACAACAATAATAACGCCTCAGTCCCAAATAAATTAGGGATCGGCTATATGAATCACTGGCCATGTTTCCATTCTCATCTCAGGACAATATTATACAAATTAGAAATAGTAAAGTAAAATGTACTAAAAGTTCTATATATATTTTTCGTTTAGACTCATCTTGGACCAGTATTATGCAAAATAAAAATAGAAGTAAAATCTACTAGACGTTCTCTATATTTCAAATTATATATAGAATCAGAATTCAAGAAAAATGGTTAGAATTAGAGATTTATCTCTTTCAGCAAAGGAGTTCTATTCATTTTGTTGGGACATCATCTTTTTTGCATCTGTGTTTTGTCTTCTATTTTTCATATTAGATTTCAGGAGCCCCTCTTAGAAGCACACCGAAGCCTGAACAACTTTGTCTTATTCAAATAGAATAGTGTTGTCTCAGGATATTGTGGGCTAGGGCTTCTGAGTTGACGCTGGGTCATATGATCTTTGGAGGAATTAGAGTAGTCTGATGTAGAAAACCCTTTTTACCTTTCTGATATGGTTTGTGCCTCACATCTTGTCTCAATTGCATTTCCAATCTTTACCAGATAAATGGAAGCAATTAAAAGGTAGGAAGATGTGTTCTCGCTGCATGGTCGTTATCCTGAGTCTGTAATTTTTTGACCAGTATCGGAATTGCTATTCCCTACTTTAGTCAGTTTTCAGACTTGTTAACTCTCGAGTCTATTTTAGCATTTTGTTCTAGTGAGTTCCCACTTGAAATATAAGTGATTCCTGTTGACCTATATTCAGTATTAGCAGTTTTATATTTACCTTCTCGTTTGATGAAATCAAATGCAGATGGTGAAGTGTGGGGACTACTTTCAGGCAGAGGATGGGCCTAGAACATTTGGCAATATATGTATTGTGACAAAATATATGACGAGTGATGCCTCCTTAGTGTTGCGAACTCTGGAGGTGAACTATATTGAGGTTAGTAAATTCTTGTCAGCTCTTGTATGGTACAAGAAATAAACATGAATGAAAATATCTTATCTTGTCATTGACCGTTGAGTTTGGAACCAGCTTAAGAAATCTTTTAACCAATATCTGTGATGGAGGATGGTTGAATTTGACGGTTTCATACTTAATTTCTGCACTGTATGTATACACAGAGTTGGCTTGCATTGTATTACAACAATAGATTTTCAGTGTCCTGTTATAAGCTCCGTTCTATTAAATTTGATGTCCTGAAAAGAAACACCTGATTACCTTAGAAGGAATTTAGTTTTCATTTTTAATATAGATTTTCCGTGTTACTCTTGCACGCTGAATATGGTAGTTTTCATTGTTCACCATGTCTTGTTTCTACTGCTGCCTTACTTTCCGTAACTTACAGAACTTCTTTAAGTGATGCAATGTCCTCTGATCAGTCCAAATCCTTTCTTGTTGGCTATATCTCGAATCGGTCTTGACTTTGGATGGTTCCTTATCCTTGAAGCTGAGTATTATCAGTTTCTTTGTTGTGTTATATACCCAAGATTTGCTTTCTTTTTTCTTTTAACATTCTATTTTTTTTCAGAACTGTCATAAAATCATTGTTCTCAGGGGCTCTACTGAAGTAGATCCTATATCGTTAATTTCTGGGTTTTTCTTCCCCTATGGTTCCTCAAAGTTGATATATAGAACGAATTTTAATGAGAGACAATTAATTGATGCAGTTTCATCTAGGATTGCACTGATTATCTTCATAAAGTTATTTATTTTGGTTCACATCTCCTGATAAAAATGCTTGTACTGAATTTTAAATCTGGTTTAGCAAGAGTGGACTGCTGAATATTATCACGCCCCTTTGAAATAAACTGTGTCAATAAGTTGAACTTGAACAATTTGCAGAAATTTGGTGATTCTTGGGTAAAATCCATAATTCATTCGATAAGGGTAGACCTCATTATATTCTCGCGAACTTCTTTCAATACATGCAATCTTTTCAAAATCTCCATCGTACCTAAACTTGGCAGTTACTTCGTATTCTATTGAAGATTCTGCTTTGAATTCTGAATATCTGCTGTCATCAGGAGCTTATTTGTACCAAGTTCTATCTGTCTTTTCACTACATCCTCCATCAAATCTAAATATAAGATAATTCCATAAGAAATATATTCCTTCAAGTTCTCTATTGTTCATAAATAGTTTGCTTATCATTTTCTGTGCACTCTCTCTGTTCCACATTATATGACACTGTACTATTTGGAGAGTCAGACAGCTTTTCTTTAACCACCAACTCTTTCATGTGCTTTAATCTTATATTTTTAAATTATAAGGAGTTGTAATTTATAGTGCTTTCTATCTAGCTTAATTATTTAAAATCTTATTTTAGCAAGATTAAGAAGTAAGGTTGCCCCTCATACTTTGAGCCAACTCATCCTTTTTCAAATGGAGGGGGCAGTATCTATGAATTTTCTAACGTAAAGATCTTTATATCTTCTGGTATCCAGAGTATATTCAGTCCCTTCCTTCTTTTTAATACATCTCCATAATGCTATTTATCTTTTGCACTTATATTTTTTATATTTCTTATTATCTTTTGTGCTCTCTGGATAATGTACAATGATATGAAGTTACAAGTTAAATTTATAATAATGTACAATGATATGCTCCTACTTTCTCATTTCCTGTACGGCATTTTTCTTTTAGCCTATTTACATATTGATATTTTCTCTTTGTATCTTAATGTTGTCCTTGTTAACAGCTCTACCTTCTTTTACTTACCCCGATCTCGCAGATATTTCCTAATGATGACACCATATCCTCAATCCGGTTAGTTCTTAACAAATTAGTATTCACAATTTGTGAGGGTCGTTCTAGCTATATAAGAAATCCTTGACTAATAATAACATAATAAGATAAATAACTTACTTCAGAAATCAGTAATTGAATAAGTATTTGATCCATTGCATAACCATTTCAGTATTTAAGTTCAAGTAAACCATAGGATATATTCTTGCTGGTTTTCTAACAACTGGTTGATATTTATACCTAGTTTGCGTATCATTTTTTCATGATAAGGTAAAGTATATTATTGACAATTGTGGAAACCCCTATACAAGTAGTACACCAAAAAGGAAGAACCTACACCAAAATATGGTTCTCAAAAGAGACCCAATCCTCTCTACCATTAGGGTGCTTATCATTTTTTCTTAAATCAAATTTTCTTCTATCTGTATCTTCTATCTATATGTTTTCTAATACAAGGATCTTCATCATATCTTCTGTCATCAAGAGTATATTCATAGTGTCATACAGAGTCCTATCTATTTTCCATCAGTGTTGAGCCCATTGCAGATTTCAAAATCATTTTTAACACCTTTAAATCTGCCAATAAGATACCCTTCAAGGAGCTCTTTCCTTTTCTTAATTCTGCTCCCATCTACCTCAGTGGCAAAACTCTGTGATATCGCTGATGCTTCTTTGTTCATTTCTGGTCAACTATTTAACTGGGCTGCTTCAGCATAGAAATATGCTGAGAGGTCTAGTTAGTCTCTTAACCCTTGTCTGTGAATATCTTGTTATTAGCTAAGTCCTGGCACGATAATCACACTTCTTCAGACTCCCTGGTAACTTAGTGTACTCATATATTTCCATACCTGTTATAAGTTTTATGGCACTACATATTCATGTGCTTGTTCCTTCTCACTCAATTTCCTGTAGATCTCCACTGTTCTTTTGGATGCTAGCATAACCTTTGGCAGATCCATAATAGGATCTCTCTGCTGACCGTCAATCTCGACTAAGAATTTCCTTCTCTCGATCTATTCTTAACAGACTAACAGTATTCATACTCCGCAGTGGTTTCTATAATGTCAAGGCATTGATTCCTGGCTGTATAGAAGTCTCTCCCCATTAACTGTTTACGTGCTAAGTTTTCAGTCAATCAGTTTTCTAGCCACCATGCCTTAGGCGTAACTTACTGAGTGATCCCCAAATACAAAGTGCGATGAGAGAGAAAATCCTATTGCTTCTGGAATGTTGAGCTAATTGTGGATGCGGGAGTTCACCTTCAGAGTATCTGAAACTGGATCTTGTGGTTGAAGAGTGTTTCTCATATTAACATGAAGTTGGCTCTGTCCCAGCAGCACATGTAAACACGGAGCGTCTAAGGTCTGTGCAAGATAAGTTTTAGAAAAGCGCTAAGTAGTTTTAGGCTAAGTTGTGTGGACTCTTCACTTTCGATGCCGCACCTGTGTTGGATTCTCCAAAAATACTCTGCTTTTGGAGATTCTGACATGCACCCGTTGGCATTTTTGAAGAGTCCAAGCAACATAGGTTTAGGTGAATGTTTCCCTGGTCAATCCTGCATGTTAGATTAAGGTTATGATCTTTAATAATTATATCTTTATGCCTTTATATTTTACATATGTATATTAAGTACTAGTCAGTAGTGCTGGTGTGATTGCTTATACTCAACCACAACTACACCTCAGTCCCAAACAAATTGGGGTCGGCAAGGATTGCTTGTATTCAATCCCTTCAAATTTGATTTCTCTCTCCCTTGTAAGACCCAGCCCATTATCCCAATATTAGCTGGACCTGATGGGGTGACGTCGTTTTATTCCCCTATCTTCCAGCGCCAATAGTCATCTCTATTTAGACTCAACTTTGATAGATCTTTTGTTCTGTTATGTAGAAGCTAAAATACCCACCTGATCTGCTTCTCTTACTATGTGCCAGTCAGAAGAACCACCTTTGTGTGTTTTACACATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCCAGAGACACACTTGCTGTTCGTGAGATTCTGAAACGAACGTACAATTTGCCTCTTGGTCTTGGACCAATTGTAGTACACTGCAGGTTTCTCTGATCACTGACCCTGTAAATGTGCTTTTTGAATTCTGTTATTTAATTGTTTGTGTAGCTTGATGCCTCATTCTCTTGTACAGTGCTGGTATCGGTAGGACTGGAACATATTGCACAATCCATAATACCATCCAGAGAATACTGGGTGGAGATATG</genome_strand>
        <mrna_strand>ACCTTTGAAGACTTCTGGGAAATGATAATCCAGCAACGCTGTCCTGTCATTGTGATGCTTACACGATTGGTTGACAATTACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGAAGTGTGGGGACTACTTTCAGGCAGAGGATGGGCCTAGAACATTTGGCAATATATGTATTGTGACAAAATATATGACGAGTGATGCCTCCTTAGTGTTGCGAACTCTGGAGGTGAACTATATTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAAGAACCACCTTTGTGTGTTTTACACATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCCAGAGACACACTTGCTGTTCGTGAGATTCTGAAACGAACGTACAATTTGCCTCTTGGTCTTGGACCAATTGTAGTACACTGCAG.........................................................................................TGCTGGTATCGGTAGGACTGGAACATATTGCACAATCCATAATACCATCCAGAGAATACTGGGTGGAGATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E241030" ref_strand="+" ref_description="SGN-E241030 [cLED-24-N4]">
      <seq>ccactagcacacacctttgaagacttctgggaaatgataatccagcaacgctgtcctgtcattgtgatgcttacacgattggttgacaattacaagatggtgaagtgtggggactactttcaggcagaggatgggcctagaacatttggcaatatatgtattgtgacaaaatatatgacgagtgatgcctccttagtgttgcgaactctggaggtgaactatattgagtcagaagaaccacctttgtgtgttttacacattcagtatcctgaatggcctgaccatggagttcccagagacacacttgctgttcgtgagattctgaaacgaacgtacaatttgcctcttggtcttggaccaattgtagtacactgcagtgctggtatcggtaggactggaacata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0080C09.1" temp_strand="-" temp_description="C00HBa0080C09.1  CU928194.8 htgs_phase:3 submitted_to_sgn_as:C00HBa0080C09 sequenced_by:sanger upload_account_name:uk">
        <position start="80342" stop="73776"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80042" g_stop="79947" g_length="96"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="96" r_length="96" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79946" i_stop="78211" i_length="1736">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78210" g_stop="78079" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="97" r_stop="228" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78078" i_stop="74341" i_length="3738">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74340" g_stop="74192" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="229" r_stop="377" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="74191" i_stop="74103" i_length="89">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="74102" g_stop="74076" g_length="27"/>
          <reference_exon_boundary r_type="cDNA" r_start="378" r_stop="404" r_length="27" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0080C09.1" gen_strand="-" ref_id="SGN-E241030" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>404</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0080C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E241030" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80042" e_stop="79947"/>
          <exon e_start="78210" e_stop="78079"/>
          <exon e_start="74340" e_stop="74192"/>
          <exon e_start="74102" e_stop="74076"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CCACTAGCACACACCTTTGAAGACTTCTGGGAAATGATAATCCAGCAACGCTGTCCTGTCATTGTGATGCTTACACGATTGGTTGACAATTACAAGGTATTCAATTGTTTAGACTAAGGTATACTTGCTTTGCAACCAAAATAAGTAAACATTTTATGACTATAGTCTGATCTATAATTTTCTTTATGGAAGAGAGAACCGACACTTTTACCTTTTTCAGTTTCTTCATTTGTAACCCCCTCCCACACACACACAGAAGTAGACCTGGCATTTTTATGCATTGAAGAAGTTGCAAATGAATCTTTGTTGGGTCTTGAACTTTTATCTTAAGATACAAAACCGAAGCCAGGAAGCCTGGCATGGAAAGGCTCAAGAAAAAAGTATCTTACAAATATACCTTTCATGCGTTCGCGCATAGAGCTTTGGTATAGCACTAAGGGCGCTACACGCTATGTTTGGGTTAGCGCTCGTCATGTGTTTGAACTTTGTTGCGGACAAAAGGTTGGAATTTAAGTGAGGAATAATAGAGGTTTGACCATTACTCAAGGAGTTTCGAACTATTTGCTCATGGACGTGGAAAATTTTCTGGTTATTATAAAAAGATGTTCCTTTTGTTCCTCCATCTTTGCTCCTAAACCTGCGATACTGAAAGGCTAATGTTGGTATTGCTAATTAGCATCCTCATTACTTCATGTGTTCTTTCCTCATTTCTTTTTTGGCTCCAGCGTCAAGCAGGGTGTCATGGGTTTAAGGTTTGTACTTTGCTAAATACTTGTGACTTGAACATATCTTGCTACTCTATACCTATTCTTCTTTCTTCAAATATGCATGAGCTTGAACTTAGATTGAATATTCTACGTGGATATTGAGTAATCTTATGGACATTGCGCATTGTCAAGTTTGTGATCTAGAGATGAAAATATAGATTGGAGGGAGCAATTGTTGCCAGAGGAACTAGCATATGCGGGTGTAGGATCAAATTAGTATTCAATCACAACAACAATAATAACGCCTCAGTCCCAAATAAATTAGGGATCGGCTATATGAATCACTGGCCATGTTTCCATTCTCATCTCAGGACAATATTATACAAATTAGAAATAGTAAAGTAAAATGTACTAAAAGTTCTATATATATTTTTCGTTTAGACTCATCTTGGACCAGTATTATGCAAAATAAAAATAGAAGTAAAATCTACTAGACGTTCTCTATATTTCAAATTATATATAGAATCAGAATTCAAGAAAAATGGTTAGAATTAGAGATTTATCTCTTTCAGCAAAGGAGTTCTATTCATTTTGTTGGGACATCATCTTTTTTGCATCTGTGTTTTGTCTTCTATTTTTCATATTAGATTTCAGGAGCCCCTCTTAGAAGCACACCGAAGCCTGAACAACTTTGTCTTATTCAAATAGAATAGTGTTGTCTCAGGATATTGTGGGCTAGGGCTTCTGAGTTGACGCTGGGTCATATGATCTTTGGAGGAATTAGAGTAGTCTGATGTAGAAAACCCTTTTTACCTTTCTGATATGGTTTGTGCCTCACATCTTGTCTCAATTGCATTTCCAATCTTTACCAGATAAATGGAAGCAATTAAAAGGTAGGAAGATGTGTTCTCGCTGCATGGTCGTTATCCTGAGTCTGTAATTTTTTGACCAGTATCGGAATTGCTATTCCCTACTTTAGTCAGTTTTCAGACTTGTTAACTCTCGAGTCTATTTTAGCATTTTGTTCTAGTGAGTTCCCACTTGAAATATAAGTGATTCCTGTTGACCTATATTCAGTATTAGCAGTTTTATATTTACCTTCTCGTTTGATGAAATCAAATGCAGATGGTGAAGTGTGGGGACTACTTTCAGGCAGAGGATGGGCCTAGAACATTTGGCAATATATGTATTGTGACAAAATATATGACGAGTGATGCCTCCTTAGTGTTGCGAACTCTGGAGGTGAACTATATTGAGGTTAGTAAATTCTTGTCAGCTCTTGTATGGTACAAGAAATAAACATGAATGAAAATATCTTATCTTGTCATTGACCGTTGAGTTTGGAACCAGCTTAAGAAATCTTTTAACCAATATCTGTGATGGAGGATGGTTGAATTTGACGGTTTCATACTTAATTTCTGCACTGTATGTATACACAGAGTTGGCTTGCATTGTATTACAACAATAGATTTTCAGTGTCCTGTTATAAGCTCCGTTCTATTAAATTTGATGTCCTGAAAAGAAACACCTGATTACCTTAGAAGGAATTTAGTTTTCATTTTTAATATAGATTTTCCGTGTTACTCTTGCACGCTGAATATGGTAGTTTTCATTGTTCACCATGTCTTGTTTCTACTGCTGCCTTACTTTCCGTAACTTACAGAACTTCTTTAAGTGATGCAATGTCCTCTGATCAGTCCAAATCCTTTCTTGTTGGCTATATCTCGAATCGGTCTTGACTTTGGATGGTTCCTTATCCTTGAAGCTGAGTATTATCAGTTTCTTTGTTGTGTTATATACCCAAGATTTGCTTTCTTTTTTCTTTTAACATTCTATTTTTTTTCAGAACTGTCATAAAATCATTGTTCTCAGGGGCTCTACTGAAGTAGATCCTATATCGTTAATTTCTGGGTTTTTCTTCCCCTATGGTTCCTCAAAGTTGATATATAGAACGAATTTTAATGAGAGACAATTAATTGATGCAGTTTCATCTAGGATTGCACTGATTATCTTCATAAAGTTATTTATTTTGGTTCACATCTCCTGATAAAAATGCTTGTACTGAATTTTAAATCTGGTTTAGCAAGAGTGGACTGCTGAATATTATCACGCCCCTTTGAAATAAACTGTGTCAATAAGTTGAACTTGAACAATTTGCAGAAATTTGGTGATTCTTGGGTAAAATCCATAATTCATTCGATAAGGGTAGACCTCATTATATTCTCGCGAACTTCTTTCAATACATGCAATCTTTTCAAAATCTCCATCGTACCTAAACTTGGCAGTTACTTCGTATTCTATTGAAGATTCTGCTTTGAATTCTGAATATCTGCTGTCATCAGGAGCTTATTTGTACCAAGTTCTATCTGTCTTTTCACTACATCCTCCATCAAATCTAAATATAAGATAATTCCATAAGAAATATATTCCTTCAAGTTCTCTATTGTTCATAAATAGTTTGCTTATCATTTTCTGTGCACTCTCTCTGTTCCACATTATATGACACTGTACTATTTGGAGAGTCAGACAGCTTTTCTTTAACCACCAACTCTTTCATGTGCTTTAATCTTATATTTTTAAATTATAAGGAGTTGTAATTTATAGTGCTTTCTATCTAGCTTAATTATTTAAAATCTTATTTTAGCAAGATTAAGAAGTAAGGTTGCCCCTCATACTTTGAGCCAACTCATCCTTTTTCAAATGGAGGGGGCAGTATCTATGAATTTTCTAACGTAAAGATCTTTATATCTTCTGGTATCCAGAGTATATTCAGTCCCTTCCTTCTTTTTAATACATCTCCATAATGCTATTTATCTTTTGCACTTATATTTTTTATATTTCTTATTATCTTTTGTGCTCTCTGGATAATGTACAATGATATGAAGTTACAAGTTAAATTTATAATAATGTACAATGATATGCTCCTACTTTCTCATTTCCTGTACGGCATTTTTCTTTTAGCCTATTTACATATTGATATTTTCTCTTTGTATCTTAATGTTGTCCTTGTTAACAGCTCTACCTTCTTTTACTTACCCCGATCTCGCAGATATTTCCTAATGATGACACCATATCCTCAATCCGGTTAGTTCTTAACAAATTAGTATTCACAATTTGTGAGGGTCGTTCTAGCTATATAAGAAATCCTTGACTAATAATAACATAATAAGATAAATAACTTACTTCAGAAATCAGTAATTGAATAAGTATTTGATCCATTGCATAACCATTTCAGTATTTAAGTTCAAGTAAACCATAGGATATATTCTTGCTGGTTTTCTAACAACTGGTTGATATTTATACCTAGTTTGCGTATCATTTTTTCATGATAAGGTAAAGTATATTATTGACAATTGTGGAAACCCCTATACAAGTAGTACACCAAAAAGGAAGAACCTACACCAAAATATGGTTCTCAAAAGAGACCCAATCCTCTCTACCATTAGGGTGCTTATCATTTTTTCTTAAATCAAATTTTCTTCTATCTGTATCTTCTATCTATATGTTTTCTAATACAAGGATCTTCATCATATCTTCTGTCATCAAGAGTATATTCATAGTGTCATACAGAGTCCTATCTATTTTCCATCAGTGTTGAGCCCATTGCAGATTTCAAAATCATTTTTAACACCTTTAAATCTGCCAATAAGATACCCTTCAAGGAGCTCTTTCCTTTTCTTAATTCTGCTCCCATCTACCTCAGTGGCAAAACTCTGTGATATCGCTGATGCTTCTTTGTTCATTTCTGGTCAACTATTTAACTGGGCTGCTTCAGCATAGAAATATGCTGAGAGGTCTAGTTAGTCTCTTAACCCTTGTCTGTGAATATCTTGTTATTAGCTAAGTCCTGGCACGATAATCACACTTCTTCAGACTCCCTGGTAACTTAGTGTACTCATATATTTCCATACCTGTTATAAGTTTTATGGCACTACATATTCATGTGCTTGTTCCTTCTCACTCAATTTCCTGTAGATCTCCACTGTTCTTTTGGATGCTAGCATAACCTTTGGCAGATCCATAATAGGATCTCTCTGCTGACCGTCAATCTCGACTAAGAATTTCCTTCTCTCGATCTATTCTTAACAGACTAACAGTATTCATACTCCGCAGTGGTTTCTATAATGTCAAGGCATTGATTCCTGGCTGTATAGAAGTCTCTCCCCATTAACTGTTTACGTGCTAAGTTTTCAGTCAATCAGTTTTCTAGCCACCATGCCTTAGGCGTAACTTACTGAGTGATCCCCAAATACAAAGTGCGATGAGAGAGAAAATCCTATTGCTTCTGGAATGTTGAGCTAATTGTGGATGCGGGAGTTCACCTTCAGAGTATCTGAAACTGGATCTTGTGGTTGAAGAGTGTTTCTCATATTAACATGAAGTTGGCTCTGTCCCAGCAGCACATGTAAACACGGAGCGTCTAAGGTCTGTGCAAGATAAGTTTTAGAAAAGCGCTAAGTAGTTTTAGGCTAAGTTGTGTGGACTCTTCACTTTCGATGCCGCACCTGTGTTGGATTCTCCAAAAATACTCTGCTTTTGGAGATTCTGACATGCACCCGTTGGCATTTTTGAAGAGTCCAAGCAACATAGGTTTAGGTGAATGTTTCCCTGGTCAATCCTGCATGTTAGATTAAGGTTATGATCTTTAATAATTATATCTTTATGCCTTTATATTTTACATATGTATATTAAGTACTAGTCAGTAGTGCTGGTGTGATTGCTTATACTCAACCACAACTACACCTCAGTCCCAAACAAATTGGGGTCGGCAAGGATTGCTTGTATTCAATCCCTTCAAATTTGATTTCTCTCTCCCTTGTAAGACCCAGCCCATTATCCCAATATTAGCTGGACCTGATGGGGTGACGTCGTTTTATTCCCCTATCTTCCAGCGCCAATAGTCATCTCTATTTAGACTCAACTTTGATAGATCTTTTGTTCTGTTATGTAGAAGCTAAAATACCCACCTGATCTGCTTCTCTTACTATGTGCCAGTCAGAAGAACCACCTTTGTGTGTTTTACACATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCCAGAGACACACTTGCTGTTCGTGAGATTCTGAAACGAACGTACAATTTGCCTCTTGGTCTTGGACCAATTGTAGTACACTGCAGGTTTCTCTGATCACTGACCCTGTAAATGTGCTTTTTGAATTCTGTTATTTAATTGTTTGTGTAGCTTGATGCCTCATTCTCTTGTACAGTGCTGGTATCGGTAGGACTGGAACATA</genome_strand>
        <mrna_strand>CCACTAGCACACACCTTTGAAGACTTCTGGGAAATGATAATCCAGCAACGCTGTCCTGTCATTGTGATGCTTACACGATTGGTTGACAATTACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGAAGTGTGGGGACTACTTTCAGGCAGAGGATGGGCCTAGAACATTTGGCAATATATGTATTGTGACAAAATATATGACGAGTGATGCCTCCTTAGTGTTGCGAACTCTGGAGGTGAACTATATTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAAGAACCACCTTTGTGTGTTTTACACATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCCAGAGACACACTTGCTGTTCGTGAGATTCTGAAACGAACGTACAATTTGCCTCTTGGTCTTGGACCAATTGTAGTACACTGCAG.........................................................................................TGCTGGTATCGGTAGGACTGGAACATA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E238112" ref_strand="+" ref_description="SGN-E238112 [cLED-22-K24]">
      <seq>caggtccactagcacacacctttgaagacttctgggaaatgataatccagcaacgctgtcctgtcattgtgatgcttacacgattggttgacaattacaagatggtgaagtgtggggactactttaaggcagaggatggccctagaacattgggaattatatgtttggggacaaattatatgacaagtgatgcctccttagtgttgcgaactctggaggtgaactatattgagtcagaagaaccacctttgtgtgttttacacattcagtatcctgaatggcctgaccatggagttcccagagacacactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0080C09.1" temp_strand="-" temp_description="C00HBa0080C09.1  CU928194.8 htgs_phase:3 submitted_to_sgn_as:C00HBa0080C09 sequenced_by:sanger upload_account_name:uk">
        <position start="80346" stop="73963"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80047" g_stop="79947" g_length="101"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="101" r_length="101" r_score="0.990"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79946" i_stop="78211" i_length="1736">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.96"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78210" g_stop="78079" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="102" r_stop="233" r_length="132" r_score="0.924"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78078" i_stop="74341" i_length="3738">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74340" g_stop="74263" g_length="78"/>
          <reference_exon_boundary r_type="cDNA" r_start="234" r_stop="311" r_length="78" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0080C09.1" gen_strand="-" ref_id="SGN-E238112" ref_strand="+">
        <total_alignment_score>0.965</total_alignment_score>
        <cumulative_length_of_scored_exons>311</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0080C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E238112" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80047" e_stop="79947"/>
          <exon e_start="78210" e_stop="78079"/>
          <exon e_start="74340" e_stop="74263"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGGTCCACTAGCACACACCTTTGAAGACTTCTGGGAAATGATAATCCAGCAACGCTGTCCTGTCATTGTGATGCTTACACGATTGGTTGACAATTACAAGGTATTCAATTGTTTAGACTAAGGTATACTTGCTTTGCAACCAAAATAAGTAAACATTTTATGACTATAGTCTGATCTATAATTTTCTTTATGGAAGAGAGAACCGACACTTTTACCTTTTTCAGTTTCTTCATTTGTAACCCCCTCCCACACACACACAGAAGTAGACCTGGCATTTTTATGCATTGAAGAAGTTGCAAATGAATCTTTGTTGGGTCTTGAACTTTTATCTTAAGATACAAAACCGAAGCCAGGAAGCCTGGCATGGAAAGGCTCAAGAAAAAAGTATCTTACAAATATACCTTTCATGCGTTCGCGCATAGAGCTTTGGTATAGCACTAAGGGCGCTACACGCTATGTTTGGGTTAGCGCTCGTCATGTGTTTGAACTTTGTTGCGGACAAAAGGTTGGAATTTAAGTGAGGAATAATAGAGGTTTGACCATTACTCAAGGAGTTTCGAACTATTTGCTCATGGACGTGGAAAATTTTCTGGTTATTATAAAAAGATGTTCCTTTTGTTCCTCCATCTTTGCTCCTAAACCTGCGATACTGAAAGGCTAATGTTGGTATTGCTAATTAGCATCCTCATTACTTCATGTGTTCTTTCCTCATTTCTTTTTTGGCTCCAGCGTCAAGCAGGGTGTCATGGGTTTAAGGTTTGTACTTTGCTAAATACTTGTGACTTGAACATATCTTGCTACTCTATACCTATTCTTCTTTCTTCAAATATGCATGAGCTTGAACTTAGATTGAATATTCTACGTGGATATTGAGTAATCTTATGGACATTGCGCATTGTCAAGTTTGTGATCTAGAGATGAAAATATAGATTGGAGGGAGCAATTGTTGCCAGAGGAACTAGCATATGCGGGTGTAGGATCAAATTAGTATTCAATCACAACAACAATAATAACGCCTCAGTCCCAAATAAATTAGGGATCGGCTATATGAATCACTGGCCATGTTTCCATTCTCATCTCAGGACAATATTATACAAATTAGAAATAGTAAAGTAAAATGTACTAAAAGTTCTATATATATTTTTCGTTTAGACTCATCTTGGACCAGTATTATGCAAAATAAAAATAGAAGTAAAATCTACTAGACGTTCTCTATATTTCAAATTATATATAGAATCAGAATTCAAGAAAAATGGTTAGAATTAGAGATTTATCTCTTTCAGCAAAGGAGTTCTATTCATTTTGTTGGGACATCATCTTTTTTGCATCTGTGTTTTGTCTTCTATTTTTCATATTAGATTTCAGGAGCCCCTCTTAGAAGCACACCGAAGCCTGAACAACTTTGTCTTATTCAAATAGAATAGTGTTGTCTCAGGATATTGTGGGCTAGGGCTTCTGAGTTGACGCTGGGTCATATGATCTTTGGAGGAATTAGAGTAGTCTGATGTAGAAAACCCTTTTTACCTTTCTGATATGGTTTGTGCCTCACATCTTGTCTCAATTGCATTTCCAATCTTTACCAGATAAATGGAAGCAATTAAAAGGTAGGAAGATGTGTTCTCGCTGCATGGTCGTTATCCTGAGTCTGTAATTTTTTGACCAGTATCGGAATTGCTATTCCCTACTTTAGTCAGTTTTCAGACTTGTTAACTCTCGAGTCTATTTTAGCATTTTGTTCTAGTGAGTTCCCACTTGAAATATAAGTGATTCCTGTTGACCTATATTCAGTATTAGCAGTTTTATATTTACCTTCTCGTTTGATGAAATCAAATGCAGATGGTGAAGTGTGGGGACTACTTTCAGGCAGAGGATGGGCCTAGAACATTTGGCAATATATGTATTGTGACAAAATATATGACGAGTGATGCCTCCTTAGTGTTGCGAACTCTGGAGGTGAACTATATTGAGGTTAGTAAATTCTTGTCAGCTCTTGTATGGTACAAGAAATAAACATGAATGAAAATATCTTATCTTGTCATTGACCGTTGAGTTTGGAACCAGCTTAAGAAATCTTTTAACCAATATCTGTGATGGAGGATGGTTGAATTTGACGGTTTCATACTTAATTTCTGCACTGTATGTATACACAGAGTTGGCTTGCATTGTATTACAACAATAGATTTTCAGTGTCCTGTTATAAGCTCCGTTCTATTAAATTTGATGTCCTGAAAAGAAACACCTGATTACCTTAGAAGGAATTTAGTTTTCATTTTTAATATAGATTTTCCGTGTTACTCTTGCACGCTGAATATGGTAGTTTTCATTGTTCACCATGTCTTGTTTCTACTGCTGCCTTACTTTCCGTAACTTACAGAACTTCTTTAAGTGATGCAATGTCCTCTGATCAGTCCAAATCCTTTCTTGTTGGCTATATCTCGAATCGGTCTTGACTTTGGATGGTTCCTTATCCTTGAAGCTGAGTATTATCAGTTTCTTTGTTGTGTTATATACCCAAGATTTGCTTTCTTTTTTCTTTTAACATTCTATTTTTTTTCAGAACTGTCATAAAATCATTGTTCTCAGGGGCTCTACTGAAGTAGATCCTATATCGTTAATTTCTGGGTTTTTCTTCCCCTATGGTTCCTCAAAGTTGATATATAGAACGAATTTTAATGAGAGACAATTAATTGATGCAGTTTCATCTAGGATTGCACTGATTATCTTCATAAAGTTATTTATTTTGGTTCACATCTCCTGATAAAAATGCTTGTACTGAATTTTAAATCTGGTTTAGCAAGAGTGGACTGCTGAATATTATCACGCCCCTTTGAAATAAACTGTGTCAATAAGTTGAACTTGAACAATTTGCAGAAATTTGGTGATTCTTGGGTAAAATCCATAATTCATTCGATAAGGGTAGACCTCATTATATTCTCGCGAACTTCTTTCAATACATGCAATCTTTTCAAAATCTCCATCGTACCTAAACTTGGCAGTTACTTCGTATTCTATTGAAGATTCTGCTTTGAATTCTGAATATCTGCTGTCATCAGGAGCTTATTTGTACCAAGTTCTATCTGTCTTTTCACTACATCCTCCATCAAATCTAAATATAAGATAATTCCATAAGAAATATATTCCTTCAAGTTCTCTATTGTTCATAAATAGTTTGCTTATCATTTTCTGTGCACTCTCTCTGTTCCACATTATATGACACTGTACTATTTGGAGAGTCAGACAGCTTTTCTTTAACCACCAACTCTTTCATGTGCTTTAATCTTATATTTTTAAATTATAAGGAGTTGTAATTTATAGTGCTTTCTATCTAGCTTAATTATTTAAAATCTTATTTTAGCAAGATTAAGAAGTAAGGTTGCCCCTCATACTTTGAGCCAACTCATCCTTTTTCAAATGGAGGGGGCAGTATCTATGAATTTTCTAACGTAAAGATCTTTATATCTTCTGGTATCCAGAGTATATTCAGTCCCTTCCTTCTTTTTAATACATCTCCATAATGCTATTTATCTTTTGCACTTATATTTTTTATATTTCTTATTATCTTTTGTGCTCTCTGGATAATGTACAATGATATGAAGTTACAAGTTAAATTTATAATAATGTACAATGATATGCTCCTACTTTCTCATTTCCTGTACGGCATTTTTCTTTTAGCCTATTTACATATTGATATTTTCTCTTTGTATCTTAATGTTGTCCTTGTTAACAGCTCTACCTTCTTTTACTTACCCCGATCTCGCAGATATTTCCTAATGATGACACCATATCCTCAATCCGGTTAGTTCTTAACAAATTAGTATTCACAATTTGTGAGGGTCGTTCTAGCTATATAAGAAATCCTTGACTAATAATAACATAATAAGATAAATAACTTACTTCAGAAATCAGTAATTGAATAAGTATTTGATCCATTGCATAACCATTTCAGTATTTAAGTTCAAGTAAACCATAGGATATATTCTTGCTGGTTTTCTAACAACTGGTTGATATTTATACCTAGTTTGCGTATCATTTTTTCATGATAAGGTAAAGTATATTATTGACAATTGTGGAAACCCCTATACAAGTAGTACACCAAAAAGGAAGAACCTACACCAAAATATGGTTCTCAAAAGAGACCCAATCCTCTCTACCATTAGGGTGCTTATCATTTTTTCTTAAATCAAATTTTCTTCTATCTGTATCTTCTATCTATATGTTTTCTAATACAAGGATCTTCATCATATCTTCTGTCATCAAGAGTATATTCATAGTGTCATACAGAGTCCTATCTATTTTCCATCAGTGTTGAGCCCATTGCAGATTTCAAAATCATTTTTAACACCTTTAAATCTGCCAATAAGATACCCTTCAAGGAGCTCTTTCCTTTTCTTAATTCTGCTCCCATCTACCTCAGTGGCAAAACTCTGTGATATCGCTGATGCTTCTTTGTTCATTTCTGGTCAACTATTTAACTGGGCTGCTTCAGCATAGAAATATGCTGAGAGGTCTAGTTAGTCTCTTAACCCTTGTCTGTGAATATCTTGTTATTAGCTAAGTCCTGGCACGATAATCACACTTCTTCAGACTCCCTGGTAACTTAGTGTACTCATATATTTCCATACCTGTTATAAGTTTTATGGCACTACATATTCATGTGCTTGTTCCTTCTCACTCAATTTCCTGTAGATCTCCACTGTTCTTTTGGATGCTAGCATAACCTTTGGCAGATCCATAATAGGATCTCTCTGCTGACCGTCAATCTCGACTAAGAATTTCCTTCTCTCGATCTATTCTTAACAGACTAACAGTATTCATACTCCGCAGTGGTTTCTATAATGTCAAGGCATTGATTCCTGGCTGTATAGAAGTCTCTCCCCATTAACTGTTTACGTGCTAAGTTTTCAGTCAATCAGTTTTCTAGCCACCATGCCTTAGGCGTAACTTACTGAGTGATCCCCAAATACAAAGTGCGATGAGAGAGAAAATCCTATTGCTTCTGGAATGTTGAGCTAATTGTGGATGCGGGAGTTCACCTTCAGAGTATCTGAAACTGGATCTTGTGGTTGAAGAGTGTTTCTCATATTAACATGAAGTTGGCTCTGTCCCAGCAGCACATGTAAACACGGAGCGTCTAAGGTCTGTGCAAGATAAGTTTTAGAAAAGCGCTAAGTAGTTTTAGGCTAAGTTGTGTGGACTCTTCACTTTCGATGCCGCACCTGTGTTGGATTCTCCAAAAATACTCTGCTTTTGGAGATTCTGACATGCACCCGTTGGCATTTTTGAAGAGTCCAAGCAACATAGGTTTAGGTGAATGTTTCCCTGGTCAATCCTGCATGTTAGATTAAGGTTATGATCTTTAATAATTATATCTTTATGCCTTTATATTTTACATATGTATATTAAGTACTAGTCAGTAGTGCTGGTGTGATTGCTTATACTCAACCACAACTACACCTCAGTCCCAAACAAATTGGGGTCGGCAAGGATTGCTTGTATTCAATCCCTTCAAATTTGATTTCTCTCTCCCTTGTAAGACCCAGCCCATTATCCCAATATTAGCTGGACCTGATGGGGTGACGTCGTTTTATTCCCCTATCTTCCAGCGCCAATAGTCATCTCTATTTAGACTCAACTTTGATAGATCTTTTGTTCTGTTATGTAGAAGCTAAAATACCCACCTGATCTGCTTCTCTTACTATGTGCCAGTCAGAAGAACCACCTTTGTGTGTTTTACACATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCCAGAGACACACTT</genome_strand>
        <mrna_strand>CAGGTCCACTAGCACACACCTTTGAAGACTTCTGGGAAATGATAATCCAGCAACGCTGTCCTGTCATTGTGATGCTTACACGATTGGTTGACAATTACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGAAGTGTGGGGACTACTTTAAGGCAGAGGATGGCCCTAGAACATTGGGAATTATATGTTTGGGGACAAATTATATGACAAGTGATGCCTCCTTAGTGTTGCGAACTCTGGAGGTGAACTATATTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAAGAACCACCTTTGTGTGTTTTACACATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCCAGAGACACACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E239616" ref_strand="+" ref_description="SGN-E239616 [cLED-23-D14]">
      <seq>ttgttgcaacacaaggtccacgagcacacacctttgaagacttctgggaaatgataatccagcaacgctgtcctgtcattgtgatgcttacacgattggttgacaattacaagatggtgaagtgtggggactactttcaggcagaggatgggcctagaacatttggcaatatatgtattgtgacaaaatatatgacgagtgatgcctccttagtgttgcgaactctggaggtgaactatattgagtcagaagaaccacctttgtgtgttttacacattcagtatcctgaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0080C09.1" temp_strand="-" temp_description="C00HBa0080C09.1  CU928194.8 htgs_phase:3 submitted_to_sgn_as:C00HBa0080C09 sequenced_by:sanger upload_account_name:uk">
        <position start="80359" stop="73995"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="80059" g_stop="79947" g_length="113"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="113" r_length="113" r_score="0.991"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="79946" i_stop="78211" i_length="1736">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="78210" g_stop="78079" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="114" r_stop="245" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="78078" i_stop="74341" i_length="3738">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="74340" g_stop="74295" g_length="46"/>
          <reference_exon_boundary r_type="cDNA" r_start="246" r_stop="291" r_length="46" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0080C09.1" gen_strand="-" ref_id="SGN-E239616" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>291</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0080C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E239616" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="80059" e_stop="79947"/>
          <exon e_start="78210" e_stop="78079"/>
          <exon e_start="74340" e_stop="74295"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TTGTTGCAACACAAGGTCCACTAGCACACACCTTTGAAGACTTCTGGGAAATGATAATCCAGCAACGCTGTCCTGTCATTGTGATGCTTACACGATTGGTTGACAATTACAAGGTATTCAATTGTTTAGACTAAGGTATACTTGCTTTGCAACCAAAATAAGTAAACATTTTATGACTATAGTCTGATCTATAATTTTCTTTATGGAAGAGAGAACCGACACTTTTACCTTTTTCAGTTTCTTCATTTGTAACCCCCTCCCACACACACACAGAAGTAGACCTGGCATTTTTATGCATTGAAGAAGTTGCAAATGAATCTTTGTTGGGTCTTGAACTTTTATCTTAAGATACAAAACCGAAGCCAGGAAGCCTGGCATGGAAAGGCTCAAGAAAAAAGTATCTTACAAATATACCTTTCATGCGTTCGCGCATAGAGCTTTGGTATAGCACTAAGGGCGCTACACGCTATGTTTGGGTTAGCGCTCGTCATGTGTTTGAACTTTGTTGCGGACAAAAGGTTGGAATTTAAGTGAGGAATAATAGAGGTTTGACCATTACTCAAGGAGTTTCGAACTATTTGCTCATGGACGTGGAAAATTTTCTGGTTATTATAAAAAGATGTTCCTTTTGTTCCTCCATCTTTGCTCCTAAACCTGCGATACTGAAAGGCTAATGTTGGTATTGCTAATTAGCATCCTCATTACTTCATGTGTTCTTTCCTCATTTCTTTTTTGGCTCCAGCGTCAAGCAGGGTGTCATGGGTTTAAGGTTTGTACTTTGCTAAATACTTGTGACTTGAACATATCTTGCTACTCTATACCTATTCTTCTTTCTTCAAATATGCATGAGCTTGAACTTAGATTGAATATTCTACGTGGATATTGAGTAATCTTATGGACATTGCGCATTGTCAAGTTTGTGATCTAGAGATGAAAATATAGATTGGAGGGAGCAATTGTTGCCAGAGGAACTAGCATATGCGGGTGTAGGATCAAATTAGTATTCAATCACAACAACAATAATAACGCCTCAGTCCCAAATAAATTAGGGATCGGCTATATGAATCACTGGCCATGTTTCCATTCTCATCTCAGGACAATATTATACAAATTAGAAATAGTAAAGTAAAATGTACTAAAAGTTCTATATATATTTTTCGTTTAGACTCATCTTGGACCAGTATTATGCAAAATAAAAATAGAAGTAAAATCTACTAGACGTTCTCTATATTTCAAATTATATATAGAATCAGAATTCAAGAAAAATGGTTAGAATTAGAGATTTATCTCTTTCAGCAAAGGAGTTCTATTCATTTTGTTGGGACATCATCTTTTTTGCATCTGTGTTTTGTCTTCTATTTTTCATATTAGATTTCAGGAGCCCCTCTTAGAAGCACACCGAAGCCTGAACAACTTTGTCTTATTCAAATAGAATAGTGTTGTCTCAGGATATTGTGGGCTAGGGCTTCTGAGTTGACGCTGGGTCATATGATCTTTGGAGGAATTAGAGTAGTCTGATGTAGAAAACCCTTTTTACCTTTCTGATATGGTTTGTGCCTCACATCTTGTCTCAATTGCATTTCCAATCTTTACCAGATAAATGGAAGCAATTAAAAGGTAGGAAGATGTGTTCTCGCTGCATGGTCGTTATCCTGAGTCTGTAATTTTTTGACCAGTATCGGAATTGCTATTCCCTACTTTAGTCAGTTTTCAGACTTGTTAACTCTCGAGTCTATTTTAGCATTTTGTTCTAGTGAGTTCCCACTTGAAATATAAGTGATTCCTGTTGACCTATATTCAGTATTAGCAGTTTTATATTTACCTTCTCGTTTGATGAAATCAAATGCAGATGGTGAAGTGTGGGGACTACTTTCAGGCAGAGGATGGGCCTAGAACATTTGGCAATATATGTATTGTGACAAAATATATGACGAGTGATGCCTCCTTAGTGTTGCGAACTCTGGAGGTGAACTATATTGAGGTTAGTAAATTCTTGTCAGCTCTTGTATGGTACAAGAAATAAACATGAATGAAAATATCTTATCTTGTCATTGACCGTTGAGTTTGGAACCAGCTTAAGAAATCTTTTAACCAATATCTGTGATGGAGGATGGTTGAATTTGACGGTTTCATACTTAATTTCTGCACTGTATGTATACACAGAGTTGGCTTGCATTGTATTACAACAATAGATTTTCAGTGTCCTGTTATAAGCTCCGTTCTATTAAATTTGATGTCCTGAAAAGAAACACCTGATTACCTTAGAAGGAATTTAGTTTTCATTTTTAATATAGATTTTCCGTGTTACTCTTGCACGCTGAATATGGTAGTTTTCATTGTTCACCATGTCTTGTTTCTACTGCTGCCTTACTTTCCGTAACTTACAGAACTTCTTTAAGTGATGCAATGTCCTCTGATCAGTCCAAATCCTTTCTTGTTGGCTATATCTCGAATCGGTCTTGACTTTGGATGGTTCCTTATCCTTGAAGCTGAGTATTATCAGTTTCTTTGTTGTGTTATATACCCAAGATTTGCTTTCTTTTTTCTTTTAACATTCTATTTTTTTTCAGAACTGTCATAAAATCATTGTTCTCAGGGGCTCTACTGAAGTAGATCCTATATCGTTAATTTCTGGGTTTTTCTTCCCCTATGGTTCCTCAAAGTTGATATATAGAACGAATTTTAATGAGAGACAATTAATTGATGCAGTTTCATCTAGGATTGCACTGATTATCTTCATAAAGTTATTTATTTTGGTTCACATCTCCTGATAAAAATGCTTGTACTGAATTTTAAATCTGGTTTAGCAAGAGTGGACTGCTGAATATTATCACGCCCCTTTGAAATAAACTGTGTCAATAAGTTGAACTTGAACAATTTGCAGAAATTTGGTGATTCTTGGGTAAAATCCATAATTCATTCGATAAGGGTAGACCTCATTATATTCTCGCGAACTTCTTTCAATACATGCAATCTTTTCAAAATCTCCATCGTACCTAAACTTGGCAGTTACTTCGTATTCTATTGAAGATTCTGCTTTGAATTCTGAATATCTGCTGTCATCAGGAGCTTATTTGTACCAAGTTCTATCTGTCTTTTCACTACATCCTCCATCAAATCTAAATATAAGATAATTCCATAAGAAATATATTCCTTCAAGTTCTCTATTGTTCATAAATAGTTTGCTTATCATTTTCTGTGCACTCTCTCTGTTCCACATTATATGACACTGTACTATTTGGAGAGTCAGACAGCTTTTCTTTAACCACCAACTCTTTCATGTGCTTTAATCTTATATTTTTAAATTATAAGGAGTTGTAATTTATAGTGCTTTCTATCTAGCTTAATTATTTAAAATCTTATTTTAGCAAGATTAAGAAGTAAGGTTGCCCCTCATACTTTGAGCCAACTCATCCTTTTTCAAATGGAGGGGGCAGTATCTATGAATTTTCTAACGTAAAGATCTTTATATCTTCTGGTATCCAGAGTATATTCAGTCCCTTCCTTCTTTTTAATACATCTCCATAATGCTATTTATCTTTTGCACTTATATTTTTTATATTTCTTATTATCTTTTGTGCTCTCTGGATAATGTACAATGATATGAAGTTACAAGTTAAATTTATAATAATGTACAATGATATGCTCCTACTTTCTCATTTCCTGTACGGCATTTTTCTTTTAGCCTATTTACATATTGATATTTTCTCTTTGTATCTTAATGTTGTCCTTGTTAACAGCTCTACCTTCTTTTACTTACCCCGATCTCGCAGATATTTCCTAATGATGACACCATATCCTCAATCCGGTTAGTTCTTAACAAATTAGTATTCACAATTTGTGAGGGTCGTTCTAGCTATATAAGAAATCCTTGACTAATAATAACATAATAAGATAAATAACTTACTTCAGAAATCAGTAATTGAATAAGTATTTGATCCATTGCATAACCATTTCAGTATTTAAGTTCAAGTAAACCATAGGATATATTCTTGCTGGTTTTCTAACAACTGGTTGATATTTATACCTAGTTTGCGTATCATTTTTTCATGATAAGGTAAAGTATATTATTGACAATTGTGGAAACCCCTATACAAGTAGTACACCAAAAAGGAAGAACCTACACCAAAATATGGTTCTCAAAAGAGACCCAATCCTCTCTACCATTAGGGTGCTTATCATTTTTTCTTAAATCAAATTTTCTTCTATCTGTATCTTCTATCTATATGTTTTCTAATACAAGGATCTTCATCATATCTTCTGTCATCAAGAGTATATTCATAGTGTCATACAGAGTCCTATCTATTTTCCATCAGTGTTGAGCCCATTGCAGATTTCAAAATCATTTTTAACACCTTTAAATCTGCCAATAAGATACCCTTCAAGGAGCTCTTTCCTTTTCTTAATTCTGCTCCCATCTACCTCAGTGGCAAAACTCTGTGATATCGCTGATGCTTCTTTGTTCATTTCTGGTCAACTATTTAACTGGGCTGCTTCAGCATAGAAATATGCTGAGAGGTCTAGTTAGTCTCTTAACCCTTGTCTGTGAATATCTTGTTATTAGCTAAGTCCTGGCACGATAATCACACTTCTTCAGACTCCCTGGTAACTTAGTGTACTCATATATTTCCATACCTGTTATAAGTTTTATGGCACTACATATTCATGTGCTTGTTCCTTCTCACTCAATTTCCTGTAGATCTCCACTGTTCTTTTGGATGCTAGCATAACCTTTGGCAGATCCATAATAGGATCTCTCTGCTGACCGTCAATCTCGACTAAGAATTTCCTTCTCTCGATCTATTCTTAACAGACTAACAGTATTCATACTCCGCAGTGGTTTCTATAATGTCAAGGCATTGATTCCTGGCTGTATAGAAGTCTCTCCCCATTAACTGTTTACGTGCTAAGTTTTCAGTCAATCAGTTTTCTAGCCACCATGCCTTAGGCGTAACTTACTGAGTGATCCCCAAATACAAAGTGCGATGAGAGAGAAAATCCTATTGCTTCTGGAATGTTGAGCTAATTGTGGATGCGGGAGTTCACCTTCAGAGTATCTGAAACTGGATCTTGTGGTTGAAGAGTGTTTCTCATATTAACATGAAGTTGGCTCTGTCCCAGCAGCACATGTAAACACGGAGCGTCTAAGGTCTGTGCAAGATAAGTTTTAGAAAAGCGCTAAGTAGTTTTAGGCTAAGTTGTGTGGACTCTTCACTTTCGATGCCGCACCTGTGTTGGATTCTCCAAAAATACTCTGCTTTTGGAGATTCTGACATGCACCCGTTGGCATTTTTGAAGAGTCCAAGCAACATAGGTTTAGGTGAATGTTTCCCTGGTCAATCCTGCATGTTAGATTAAGGTTATGATCTTTAATAATTATATCTTTATGCCTTTATATTTTACATATGTATATTAAGTACTAGTCAGTAGTGCTGGTGTGATTGCTTATACTCAACCACAACTACACCTCAGTCCCAAACAAATTGGGGTCGGCAAGGATTGCTTGTATTCAATCCCTTCAAATTTGATTTCTCTCTCCCTTGTAAGACCCAGCCCATTATCCCAATATTAGCTGGACCTGATGGGGTGACGTCGTTTTATTCCCCTATCTTCCAGCGCCAATAGTCATCTCTATTTAGACTCAACTTTGATAGATCTTTTGTTCTGTTATGTAGAAGCTAAAATACCCACCTGATCTGCTTCTCTTACTATGTGCCAGTCAGAAGAACCACCTTTGTGTGTTTTACACATTCAGTATCCTGAAT</genome_strand>
        <mrna_strand>TTGTTGCAACACAAGGTCCACGAGCACACACCTTTGAAGACTTCTGGGAAATGATAATCCAGCAACGCTGTCCTGTCATTGTGATGCTTACACGATTGGTTGACAATTACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGAAGTGTGGGGACTACTTTCAGGCAGAGGATGGGCCTAGAACATTTGGCAATATATGTATTGTGACAAAATATATGACGAGTGATGCCTCCTTAGTGTTGCGAACTCTGGAGGTGAACTATATTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAAGAACCACCTTTGTGTGTTTTACACATTCAGTATCCTGAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E334471" ref_strand="+" ref_description="SGN-E334471 [cTOD-23-E16]">
      <seq>aagaacaaaaaaagtcgaaaccacgggcagcgccgtatcagttcggagtcggagccggagatcggccatggctgccgccggtaatccgttatcctccgctgtcactttcacagagccgccacctgttgctcctggtactgctaataaatctttggatttctctgctgattcagttctacagagaatcgtactgtcgcctgatcagcgtagtcactgtttggaagcacttaaagcatttaagcagaaaaggtgtcactctccggacaaaattgcctcagagttctccactttgcaggaaaataggctgaaagcttcagaaatgaagagtagatgcttggtggctttggacagcacaaacatcagcaagaatcgttatactgatgtcatcccatttgacaataacagggttgttttggacccatgtaaagactacagaccgtcagctaagggatatatcaatgcaagctttatagagatatctgaaggggtgtctcggtttgttgcaacacaaggtccactagcacacacctttgaagacttctgggaaatgataatccagcaacgctgtcctgtcattgtgatgcttacacgattggttgacaattacaagatggtgaagtgtggggactactttcaggcagaggatgggcctagaactttggcaatatatgtattgtgacaaaatatatgacgagtgatgcctccttagtgttgcgaactctggaggtgaactatattgagtcagaagaaccacctttgtgtgttttacacattcagtat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0080C09.1" temp_strand="-" temp_description="C00HBa0080C09.1  CU928194.8 htgs_phase:3 submitted_to_sgn_as:C00HBa0080C09 sequenced_by:sanger upload_account_name:uk">
        <position start="83911" stop="74002"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83611" g_stop="83317" g_length="295"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="295" r_length="295" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83316" i_stop="80476" i_length="2841">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80475" g_stop="80379" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="296" r_stop="392" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80378" i_stop="80291" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80290" g_stop="80208" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="393" r_stop="475" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80207" i_stop="80082" i_length="126">
            <donor d_prob="0.846" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80081" g_stop="79947" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="476" r_stop="610" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79946" i_stop="78211" i_length="1736">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78210" g_stop="78079" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="611" r_stop="741" r_length="131" r_score="0.992"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78078" i_stop="74341" i_length="3738">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74340" g_stop="74302" g_length="39"/>
          <reference_exon_boundary r_type="cDNA" r_start="742" r_stop="780" r_length="39" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0080C09.1" gen_strand="-" ref_id="SGN-E334471" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>781</cumulative_length_of_scored_exons>
        <coverage percentage="1.001" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0080C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334471" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83611" e_stop="83317"/>
          <exon e_start="80475" e_stop="80379"/>
          <exon e_start="80290" e_stop="80208"/>
          <exon e_start="80081" e_stop="79947"/>
          <exon e_start="78210" e_stop="78079"/>
          <exon e_start="74340" e_stop="74302"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGAACAAAAAAAGTCGAAACCACGGGCAGCGCCGTATCAGTTCGGAGTCGGAGCCGGAGATCGGCCATGGCTGCCGCCGGTAATCCGTTATCCTCCGCTGTCACTTTCACAGAGCCGCCACCTGTTGCTCCTGGTACTGCTAATAAATCTTTGGATTTCTCTGCTGATTCAGTTCTACAGAGAATCGTACTGTCGCCTGATCAGCGTAGTCACTGTTTGGAAGCACTTAAAGCATTTAAGCAGAAAAGGTGTCACTCTCCGGACAAAATTGCCTCAGAGTTCTCCACTTTGCAGGTTTCCTTTTTCTTTTTTCCTGTTATTTTGTGGCTTTCGGCTATTCATTTGAAAACCTGTGTGGCAATATTTTGATGCTTAGTTTGAAGTTTACCGTAATGTTCTTGCAAAAAGGATACTAAGATATAGTATTATACTTGTACATTCAGCTGATATTAGCAGCATCTTAGTTTACTTGTATTAGTTACAGTTAGCTGTTAGCTTAACCAACAATTAGTTAGAGATATTTTTAGCCAGCTAGAGACACGGATATAAACACAACGTACAAAAATTGGAGCTCAGATTGAGCCCTAATTGTCCCTTGCTTTACATTTTAGAGCCTGTTTGGCTCAGCTTAAAAGCTGGTCAAACTACTTGCTGGTTTTTGACTTATTTAGCTGTTTGGCAATACTCAAAACAGCTTATTTTAAGTTAAAAAAAACTTATTTTAAGCCAAAAGTTAAAAGCTGGGGTAGGGGTGCTTTTTTATTTTTAGCTTATAAGCTGTTTTAAGTTGACCACATTTTTATCTTTTTGTGCTTAATATTTTTATACAATCTCCAAATTACCCATATAACCCTAACATTTCTTTCTTTCATTTATCCTTTTCACGTTTGACATAACAACTGCTTATTTTAAAAATAAGTTTCAGCACTTTTAAAAGTACTTTTTTAAAGCTGCTTTTATTAAGCCCATCCAAACGGGCCCTTAATATGGTGTCAGAGCTCTAGAGTATTTCCTTGAGCTGTTCTTCAATTGGCACACCTGGTGTTAATTTCTGTAGAAATAGAAGAAATTGAACTCTTGTATCTTCCAAATCAGCTGTTTTTGTCTTCAACTTTATCAATCATGTTATTCCTCATGGCTATGATCAGAATGAGCAATCCACTTTTAATCCAATTAGTCTCTTTACGTGCATTTTTCTGACTGTAGTAACCTTCCTTTTGATGGGATACGGTACAAATACTTTAGAAGAGGTTACTAGGATCTTTTTCCGTCAAGAATAAATTAGATCTTATCCTTGGAGACTGTGAAAGACCAGGTACGGAACCCCACAACTTGATCAGTTAAAGAGGTTCGATGATATGGTCAATTTGTGGATTTTGAATGCTCTTGCTAAAGAAGTTGCTGATAGTGTGGAATATGTCAAGGAGTCAGTTGAATTATGGAAGGAATCAGAAGATCACGATCAAACAAATGGTGCTAAGTTGTACCTAATTGAGAACGAGTTAATGACAGGACTCAAGGGTGCTTGATTACTAGCTATTACACAAAAATGAAGAAACTCTGGGAGGAATTGAACACCTTGAGTGCTAAAACACAAGATAGTTTTCAGTACACTTGTGATTCAAGGAAAATATGCATAAGGCAGAACAAGATAAGAGACTAACACAATTTCTCATGGGCTTCAATAGGTGTATATATTGAGAGGAAGCATACTTGTGATAAATTCACTGCTTCCGTAACACATGCTTTTTCCCTGCTGATTCAGGAGGAAAAACAAAAAGAGCTTCGGTCTAATAATAAGTTGGATGTACTAAGGAGTAAGGACAAGTGCTATAAACTGCATGGATATTCTCAAAATTCCAATCAAAGCCTAAAGGATTTCAATCAGAATTCTAAGATCAACAAGGGAAAAAGAACTGTGGCAAAATGTGCATTGTATACCAGTGGAAATGATATATGTTAAGGTAAAGGAACCTAACCATTAAGATGAGAATCAAAATGTCAGCTTCACTAAGTAGCAATATGGATAAATTGTTTATCTGTTACAACATTTTCAATTTGGCAATGCAGGAGAGAACTCAAACCACTTTATCTCACTACTGAAGTTGTGAACTTATCCGATATTATAGCTTGTTCAATTTCTATTGAATTTAAGAAAGTTCCATGTAAATGTTTCAAAACAAGGGCTGACTCATGAAATTTTAGATTCATGAGCCTCAAACCACATGACGTTCTACTCATTAGAACCCTATTATCAAACATTAGACTCAGTTTCTGTAGAAAAAATAGATGGCTGGCATCTCACCAACAGGGATGGAAAGAACTTCGGGCTTTACCTGGTATGTTACCAGACACATCCTGTTAAGGTTTCCCACTTTGGTAATCTTACCCAATTTTATTTTATTTATATTGTTAAGGTTCTCTCTTTTATGTTTATTTTAAAGAAAATTAGAACTTCACCATATGCTTTATTGGTCACCATTCCAAATGGTTATAAAGTGAAGGTGATAGAAATTGGAAATGTGACAATTGCACCCAACATCACTTTGCACAAAGTGCTGTTTGTGCCTCTCATATACATATTATTTTTATTCATTTCTGATGGTATCCTTAATGCGTTGTCTCATTTACTAACACTTAATGCCAACTGCATACCCCATCAATGAAGAGATCTTTGGAGATCGGTAAGGTTAAAAGACCTGTTTCTTTTTTTTTTTTTTGGGATTGCTTAAGAGTGATACTTATGTTTATGCAGTCAATTCTTGTACTTCCATTTTTTCTTGTGATATAAATAATATACAATATCATCCCCATATATGTCATCCTTATCCAATTATAAAATAGAAGTCCTGAAACCAAAAAAATTGGAATATTTTTGAGGTAAAACGGGGTGAATCACTTCTGAATTTCCTCGCCGAAGCAACTTTAATAGTTCTAGGTACAGAAAATGATAGCATAAATTACAAGATTTTTTTAAGGAAAAACATTCATCTATCTGATTTATATCAGCGATGTTCCCTTATAGATGAGAAGTTTTTAGTCTATTGTTGTTTTTTTACTCCCTGTTATTTCGTTTCCTCTGATGTTATTCTGCTTCATTTGATGCCATGCTAAATTTAAGCTCCTATGGTTCAGGAAAATAGGCTGAAAGCTTCAGAAATGAAGAGTAGATGCTTGGTGGCTTTGGACAGCACAAACATCAGCAAGAATCGTTATACTGATGTCATCCCATGTATGCTAATCAGTTGTCTGTTTGTTTTCTTTGATTTTATATTGCATTATTTTTTCGAAATAATTGGATCAAGCTTCATTGCTCTCAGTTGACAATAACAGGGTTGTTTTGGACCCATGTAAAGACTACAGACCGTCAGCTAAGGGATATATCAATGCAAGCTTTATAGAGGTGGATTCCTACATCCTTCACTTGGAATTATTTAAAAAGCCACTTCCCCTACTTGCTTAGCAAACAATATTGAGTTACAACGCAAAATCTGCTTCTGACCTTTTATACTGCTCTTTTTGATTGAAGATATCTGAAGGGGTGTCTCGGTTTGTTGCAACACAAGGTCCACTAGCACACACCTTTGAAGACTTCTGGGAAATGATAATCCAGCAACGCTGTCCTGTCATTGTGATGCTTACACGATTGGTTGACAATTACAAGGTATTCAATTGTTTAGACTAAGGTATACTTGCTTTGCAACCAAAATAAGTAAACATTTTATGACTATAGTCTGATCTATAATTTTCTTTATGGAAGAGAGAACCGACACTTTTACCTTTTTCAGTTTCTTCATTTGTAACCCCCTCCCACACACACACAGAAGTAGACCTGGCATTTTTATGCATTGAAGAAGTTGCAAATGAATCTTTGTTGGGTCTTGAACTTTTATCTTAAGATACAAAACCGAAGCCAGGAAGCCTGGCATGGAAAGGCTCAAGAAAAAAGTATCTTACAAATATACCTTTCATGCGTTCGCGCATAGAGCTTTGGTATAGCACTAAGGGCGCTACACGCTATGTTTGGGTTAGCGCTCGTCATGTGTTTGAACTTTGTTGCGGACAAAAGGTTGGAATTTAAGTGAGGAATAATAGAGGTTTGACCATTACTCAAGGAGTTTCGAACTATTTGCTCATGGACGTGGAAAATTTTCTGGTTATTATAAAAAGATGTTCCTTTTGTTCCTCCATCTTTGCTCCTAAACCTGCGATACTGAAAGGCTAATGTTGGTATTGCTAATTAGCATCCTCATTACTTCATGTGTTCTTTCCTCATTTCTTTTTTGGCTCCAGCGTCAAGCAGGGTGTCATGGGTTTAAGGTTTGTACTTTGCTAAATACTTGTGACTTGAACATATCTTGCTACTCTATACCTATTCTTCTTTCTTCAAATATGCATGAGCTTGAACTTAGATTGAATATTCTACGTGGATATTGAGTAATCTTATGGACATTGCGCATTGTCAAGTTTGTGATCTAGAGATGAAAATATAGATTGGAGGGAGCAATTGTTGCCAGAGGAACTAGCATATGCGGGTGTAGGATCAAATTAGTATTCAATCACAACAACAATAATAACGCCTCAGTCCCAAATAAATTAGGGATCGGCTATATGAATCACTGGCCATGTTTCCATTCTCATCTCAGGACAATATTATACAAATTAGAAATAGTAAAGTAAAATGTACTAAAAGTTCTATATATATTTTTCGTTTAGACTCATCTTGGACCAGTATTATGCAAAATAAAAATAGAAGTAAAATCTACTAGACGTTCTCTATATTTCAAATTATATATAGAATCAGAATTCAAGAAAAATGGTTAGAATTAGAGATTTATCTCTTTCAGCAAAGGAGTTCTATTCATTTTGTTGGGACATCATCTTTTTTGCATCTGTGTTTTGTCTTCTATTTTTCATATTAGATTTCAGGAGCCCCTCTTAGAAGCACACCGAAGCCTGAACAACTTTGTCTTATTCAAATAGAATAGTGTTGTCTCAGGATATTGTGGGCTAGGGCTTCTGAGTTGACGCTGGGTCATATGATCTTTGGAGGAATTAGAGTAGTCTGATGTAGAAAACCCTTTTTACCTTTCTGATATGGTTTGTGCCTCACATCTTGTCTCAATTGCATTTCCAATCTTTACCAGATAAATGGAAGCAATTAAAAGGTAGGAAGATGTGTTCTCGCTGCATGGTCGTTATCCTGAGTCTGTAATTTTTTGACCAGTATCGGAATTGCTATTCCCTACTTTAGTCAGTTTTCAGACTTGTTAACTCTCGAGTCTATTTTAGCATTTTGTTCTAGTGAGTTCCCACTTGAAATATAAGTGATTCCTGTTGACCTATATTCAGTATTAGCAGTTTTATATTTACCTTCTCGTTTGATGAAATCAAATGCAGATGGTGAAGTGTGGGGACTACTTTCAGGCAGAGGATGGGCCTAGAACATTTGGCAATATATGTATTGTGACAAAATATATGACGAGTGATGCCTCCTTAGTGTTGCGAACTCTGGAGGTGAACTATATTGAGGTTAGTAAATTCTTGTCAGCTCTTGTATGGTACAAGAAATAAACATGAATGAAAATATCTTATCTTGTCATTGACCGTTGAGTTTGGAACCAGCTTAAGAAATCTTTTAACCAATATCTGTGATGGAGGATGGTTGAATTTGACGGTTTCATACTTAATTTCTGCACTGTATGTATACACAGAGTTGGCTTGCATTGTATTACAACAATAGATTTTCAGTGTCCTGTTATAAGCTCCGTTCTATTAAATTTGATGTCCTGAAAAGAAACACCTGATTACCTTAGAAGGAATTTAGTTTTCATTTTTAATATAGATTTTCCGTGTTACTCTTGCACGCTGAATATGGTAGTTTTCATTGTTCACCATGTCTTGTTTCTACTGCTGCCTTACTTTCCGTAACTTACAGAACTTCTTTAAGTGATGCAATGTCCTCTGATCAGTCCAAATCCTTTCTTGTTGGCTATATCTCGAATCGGTCTTGACTTTGGATGGTTCCTTATCCTTGAAGCTGAGTATTATCAGTTTCTTTGTTGTGTTATATACCCAAGATTTGCTTTCTTTTTTCTTTTAACATTCTATTTTTTTTCAGAACTGTCATAAAATCATTGTTCTCAGGGGCTCTACTGAAGTAGATCCTATATCGTTAATTTCTGGGTTTTTCTTCCCCTATGGTTCCTCAAAGTTGATATATAGAACGAATTTTAATGAGAGACAATTAATTGATGCAGTTTCATCTAGGATTGCACTGATTATCTTCATAAAGTTATTTATTTTGGTTCACATCTCCTGATAAAAATGCTTGTACTGAATTTTAAATCTGGTTTAGCAAGAGTGGACTGCTGAATATTATCACGCCCCTTTGAAATAAACTGTGTCAATAAGTTGAACTTGAACAATTTGCAGAAATTTGGTGATTCTTGGGTAAAATCCATAATTCATTCGATAAGGGTAGACCTCATTATATTCTCGCGAACTTCTTTCAATACATGCAATCTTTTCAAAATCTCCATCGTACCTAAACTTGGCAGTTACTTCGTATTCTATTGAAGATTCTGCTTTGAATTCTGAATATCTGCTGTCATCAGGAGCTTATTTGTACCAAGTTCTATCTGTCTTTTCACTACATCCTCCATCAAATCTAAATATAAGATAATTCCATAAGAAATATATTCCTTCAAGTTCTCTATTGTTCATAAATAGTTTGCTTATCATTTTCTGTGCACTCTCTCTGTTCCACATTATATGACACTGTACTATTTGGAGAGTCAGACAGCTTTTCTTTAACCACCAACTCTTTCATGTGCTTTAATCTTATATTTTTAAATTATAAGGAGTTGTAATTTATAGTGCTTTCTATCTAGCTTAATTATTTAAAATCTTATTTTAGCAAGATTAAGAAGTAAGGTTGCCCCTCATACTTTGAGCCAACTCATCCTTTTTCAAATGGAGGGGGCAGTATCTATGAATTTTCTAACGTAAAGATCTTTATATCTTCTGGTATCCAGAGTATATTCAGTCCCTTCCTTCTTTTTAATACATCTCCATAATGCTATTTATCTTTTGCACTTATATTTTTTATATTTCTTATTATCTTTTGTGCTCTCTGGATAATGTACAATGATATGAAGTTACAAGTTAAATTTATAATAATGTACAATGATATGCTCCTACTTTCTCATTTCCTGTACGGCATTTTTCTTTTAGCCTATTTACATATTGATATTTTCTCTTTGTATCTTAATGTTGTCCTTGTTAACAGCTCTACCTTCTTTTACTTACCCCGATCTCGCAGATATTTCCTAATGATGACACCATATCCTCAATCCGGTTAGTTCTTAACAAATTAGTATTCACAATTTGTGAGGGTCGTTCTAGCTATATAAGAAATCCTTGACTAATAATAACATAATAAGATAAATAACTTACTTCAGAAATCAGTAATTGAATAAGTATTTGATCCATTGCATAACCATTTCAGTATTTAAGTTCAAGTAAACCATAGGATATATTCTTGCTGGTTTTCTAACAACTGGTTGATATTTATACCTAGTTTGCGTATCATTTTTTCATGATAAGGTAAAGTATATTATTGACAATTGTGGAAACCCCTATACAAGTAGTACACCAAAAAGGAAGAACCTACACCAAAATATGGTTCTCAAAAGAGACCCAATCCTCTCTACCATTAGGGTGCTTATCATTTTTTCTTAAATCAAATTTTCTTCTATCTGTATCTTCTATCTATATGTTTTCTAATACAAGGATCTTCATCATATCTTCTGTCATCAAGAGTATATTCATAGTGTCATACAGAGTCCTATCTATTTTCCATCAGTGTTGAGCCCATTGCAGATTTCAAAATCATTTTTAACACCTTTAAATCTGCCAATAAGATACCCTTCAAGGAGCTCTTTCCTTTTCTTAATTCTGCTCCCATCTACCTCAGTGGCAAAACTCTGTGATATCGCTGATGCTTCTTTGTTCATTTCTGGTCAACTATTTAACTGGGCTGCTTCAGCATAGAAATATGCTGAGAGGTCTAGTTAGTCTCTTAACCCTTGTCTGTGAATATCTTGTTATTAGCTAAGTCCTGGCACGATAATCACACTTCTTCAGACTCCCTGGTAACTTAGTGTACTCATATATTTCCATACCTGTTATAAGTTTTATGGCACTACATATTCATGTGCTTGTTCCTTCTCACTCAATTTCCTGTAGATCTCCACTGTTCTTTTGGATGCTAGCATAACCTTTGGCAGATCCATAATAGGATCTCTCTGCTGACCGTCAATCTCGACTAAGAATTTCCTTCTCTCGATCTATTCTTAACAGACTAACAGTATTCATACTCCGCAGTGGTTTCTATAATGTCAAGGCATTGATTCCTGGCTGTATAGAAGTCTCTCCCCATTAACTGTTTACGTGCTAAGTTTTCAGTCAATCAGTTTTCTAGCCACCATGCCTTAGGCGTAACTTACTGAGTGATCCCCAAATACAAAGTGCGATGAGAGAGAAAATCCTATTGCTTCTGGAATGTTGAGCTAATTGTGGATGCGGGAGTTCACCTTCAGAGTATCTGAAACTGGATCTTGTGGTTGAAGAGTGTTTCTCATATTAACATGAAGTTGGCTCTGTCCCAGCAGCACATGTAAACACGGAGCGTCTAAGGTCTGTGCAAGATAAGTTTTAGAAAAGCGCTAAGTAGTTTTAGGCTAAGTTGTGTGGACTCTTCACTTTCGATGCCGCACCTGTGTTGGATTCTCCAAAAATACTCTGCTTTTGGAGATTCTGACATGCACCCGTTGGCATTTTTGAAGAGTCCAAGCAACATAGGTTTAGGTGAATGTTTCCCTGGTCAATCCTGCATGTTAGATTAAGGTTATGATCTTTAATAATTATATCTTTATGCCTTTATATTTTACATATGTATATTAAGTACTAGTCAGTAGTGCTGGTGTGATTGCTTATACTCAACCACAACTACACCTCAGTCCCAAACAAATTGGGGTCGGCAAGGATTGCTTGTATTCAATCCCTTCAAATTTGATTTCTCTCTCCCTTGTAAGACCCAGCCCATTATCCCAATATTAGCTGGACCTGATGGGGTGACGTCGTTTTATTCCCCTATCTTCCAGCGCCAATAGTCATCTCTATTTAGACTCAACTTTGATAGATCTTTTGTTCTGTTATGTAGAAGCTAAAATACCCACCTGATCTGCTTCTCTTACTATGTGCCAGTCAGAAGAACCACCTTTGTGTGTTTTACACATTCAGTAT</genome_strand>
        <mrna_strand>AAGAACAAAAAAAGTCGAAACCACGGGCAGCGCCGTATCAGTTCGGAGTCGGAGCCGGAGATCGGCCATGGCTGCCGCCGGTAATCCGTTATCCTCCGCTGTCACTTTCACAGAGCCGCCACCTGTTGCTCCTGGTACTGCTAATAAATCTTTGGATTTCTCTGCTGATTCAGTTCTACAGAGAATCGTACTGTCGCCTGATCAGCGTAGTCACTGTTTGGAAGCACTTAAAGCATTTAAGCAGAAAAGGTGTCACTCTCCGGACAAAATTGCCTCAGAGTTCTCCACTTTGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATAGGCTGAAAGCTTCAGAAATGAAGAGTAGATGCTTGGTGGCTTTGGACAGCACAAACATCAGCAAGAATCGTTATACTGATGTCATCCCAT........................................................................................TTGACAATAACAGGGTTGTTTTGGACCCATGTAAAGACTACAGACCGTCAGCTAAGGGATATATCAATGCAAGCTTTATAGAG..............................................................................................................................ATATCTGAAGGGGTGTCTCGGTTTGTTGCAACACAAGGTCCACTAGCACACACCTTTGAAGACTTCTGGGAAATGATAATCCAGCAACGCTGTCCTGTCATTGTGATGCTTACACGATTGGTTGACAATTACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGAAGTGTGGGGACTACTTTCAGGCAGAGGATGGGCCTAGAAC-TTTGGCAATATATGTATTGTGACAAAATATATGACGAGTGATGCCTCCTTAGTGTTGCGAACTCTGGAGGTGAACTATATTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAAGAACCACCTTTGTGTGTTTTACACATTCAGTAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E254597" ref_strand="+" ref_description="SGN-E254597 [cLEG-29-N18]">
      <seq>gcatttaagcagaaaaggtgtcactctccggaccaaaattgcctcagagttctccactttgcaggaaaataggctgaaagcttcagaaatgaagagtagatgcttggtggctttggacagcacaaacatcagcaagaatcgttatactgatgtcatcccatttgacaataacagggttgttttggacccatgtaaagactacagaccgtcagctaagggatatatcaatgcaagctttatagagatatctgaaggggtgtctcggtttgttgcaacacaaggtccactagcacacacctttgaagacttctgggaaatgataatccagcaacgctgtcctgtcattgtgatgcttacacgattggttgacaattacaagatggtgaagtgtggggactactttcaggcagaggatgggcctagaacatttggcaatatatgtattgtgacaaaatatatgacgagtgatgcctccttagtgttgcgaactctggaggtgaactatattgagtcagaagaaccacctttgtgtgttttacacattcagta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0080C09.1" temp_strand="-" temp_description="C00HBa0080C09.1  CU928194.8 htgs_phase:3 submitted_to_sgn_as:C00HBa0080C09 sequenced_by:sanger upload_account_name:uk">
        <position start="83679" stop="74003"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83379" g_stop="83317" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="64" r_length="64" r_score="0.968"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83316" i_stop="80476" i_length="2841">
            <donor d_prob="0.993" d_score="0.96"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80475" g_stop="80379" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="65" r_stop="161" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80378" i_stop="80291" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80290" g_stop="80208" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="162" r_stop="244" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80207" i_stop="80082" i_length="126">
            <donor d_prob="0.846" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80081" g_stop="79947" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="245" r_stop="379" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79946" i_stop="78211" i_length="1736">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78210" g_stop="78079" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="380" r_stop="511" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78078" i_stop="74341" i_length="3738">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="0.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74340" g_stop="74303" g_length="38"/>
          <reference_exon_boundary r_type="cDNA" r_start="512" r_stop="549" r_length="38" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0080C09.1" gen_strand="-" ref_id="SGN-E254597" ref_strand="+">
        <total_alignment_score>0.996</total_alignment_score>
        <cumulative_length_of_scored_exons>548</cumulative_length_of_scored_exons>
        <coverage percentage="0.998" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0080C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E254597" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83379" e_stop="83317"/>
          <exon e_start="80475" e_stop="80379"/>
          <exon e_start="80290" e_stop="80208"/>
          <exon e_start="80081" e_stop="79947"/>
          <exon e_start="78210" e_stop="78079"/>
          <exon e_start="74340" e_stop="74303"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTAAGCAGAAAAGGTGTCACTCTCCGGA-CAAAATTGCCTCAGAGTTCTCCACTTTGCAGGTTTCCTTTTTCTTTTTTCCTGTTATTTTGTGGCTTTCGGCTATTCATTTGAAAACCTGTGTGGCAATATTTTGATGCTTAGTTTGAAGTTTACCGTAATGTTCTTGCAAAAAGGATACTAAGATATAGTATTATACTTGTACATTCAGCTGATATTAGCAGCATCTTAGTTTACTTGTATTAGTTACAGTTAGCTGTTAGCTTAACCAACAATTAGTTAGAGATATTTTTAGCCAGCTAGAGACACGGATATAAACACAACGTACAAAAATTGGAGCTCAGATTGAGCCCTAATTGTCCCTTGCTTTACATTTTAGAGCCTGTTTGGCTCAGCTTAAAAGCTGGTCAAACTACTTGCTGGTTTTTGACTTATTTAGCTGTTTGGCAATACTCAAAACAGCTTATTTTAAGTTAAAAAAAACTTATTTTAAGCCAAAAGTTAAAAGCTGGGGTAGGGGTGCTTTTTTATTTTTAGCTTATAAGCTGTTTTAAGTTGACCACATTTTTATCTTTTTGTGCTTAATATTTTTATACAATCTCCAAATTACCCATATAACCCTAACATTTCTTTCTTTCATTTATCCTTTTCACGTTTGACATAACAACTGCTTATTTTAAAAATAAGTTTCAGCACTTTTAAAAGTACTTTTTTAAAGCTGCTTTTATTAAGCCCATCCAAACGGGCCCTTAATATGGTGTCAGAGCTCTAGAGTATTTCCTTGAGCTGTTCTTCAATTGGCACACCTGGTGTTAATTTCTGTAGAAATAGAAGAAATTGAACTCTTGTATCTTCCAAATCAGCTGTTTTTGTCTTCAACTTTATCAATCATGTTATTCCTCATGGCTATGATCAGAATGAGCAATCCACTTTTAATCCAATTAGTCTCTTTACGTGCATTTTTCTGACTGTAGTAACCTTCCTTTTGATGGGATACGGTACAAATACTTTAGAAGAGGTTACTAGGATCTTTTTCCGTCAAGAATAAATTAGATCTTATCCTTGGAGACTGTGAAAGACCAGGTACGGAACCCCACAACTTGATCAGTTAAAGAGGTTCGATGATATGGTCAATTTGTGGATTTTGAATGCTCTTGCTAAAGAAGTTGCTGATAGTGTGGAATATGTCAAGGAGTCAGTTGAATTATGGAAGGAATCAGAAGATCACGATCAAACAAATGGTGCTAAGTTGTACCTAATTGAGAACGAGTTAATGACAGGACTCAAGGGTGCTTGATTACTAGCTATTACACAAAAATGAAGAAACTCTGGGAGGAATTGAACACCTTGAGTGCTAAAACACAAGATAGTTTTCAGTACACTTGTGATTCAAGGAAAATATGCATAAGGCAGAACAAGATAAGAGACTAACACAATTTCTCATGGGCTTCAATAGGTGTATATATTGAGAGGAAGCATACTTGTGATAAATTCACTGCTTCCGTAACACATGCTTTTTCCCTGCTGATTCAGGAGGAAAAACAAAAAGAGCTTCGGTCTAATAATAAGTTGGATGTACTAAGGAGTAAGGACAAGTGCTATAAACTGCATGGATATTCTCAAAATTCCAATCAAAGCCTAAAGGATTTCAATCAGAATTCTAAGATCAACAAGGGAAAAAGAACTGTGGCAAAATGTGCATTGTATACCAGTGGAAATGATATATGTTAAGGTAAAGGAACCTAACCATTAAGATGAGAATCAAAATGTCAGCTTCACTAAGTAGCAATATGGATAAATTGTTTATCTGTTACAACATTTTCAATTTGGCAATGCAGGAGAGAACTCAAACCACTTTATCTCACTACTGAAGTTGTGAACTTATCCGATATTATAGCTTGTTCAATTTCTATTGAATTTAAGAAAGTTCCATGTAAATGTTTCAAAACAAGGGCTGACTCATGAAATTTTAGATTCATGAGCCTCAAACCACATGACGTTCTACTCATTAGAACCCTATTATCAAACATTAGACTCAGTTTCTGTAGAAAAAATAGATGGCTGGCATCTCACCAACAGGGATGGAAAGAACTTCGGGCTTTACCTGGTATGTTACCAGACACATCCTGTTAAGGTTTCCCACTTTGGTAATCTTACCCAATTTTATTTTATTTATATTGTTAAGGTTCTCTCTTTTATGTTTATTTTAAAGAAAATTAGAACTTCACCATATGCTTTATTGGTCACCATTCCAAATGGTTATAAAGTGAAGGTGATAGAAATTGGAAATGTGACAATTGCACCCAACATCACTTTGCACAAAGTGCTGTTTGTGCCTCTCATATACATATTATTTTTATTCATTTCTGATGGTATCCTTAATGCGTTGTCTCATTTACTAACACTTAATGCCAACTGCATACCCCATCAATGAAGAGATCTTTGGAGATCGGTAAGGTTAAAAGACCTGTTTCTTTTTTTTTTTTTTGGGATTGCTTAAGAGTGATACTTATGTTTATGCAGTCAATTCTTGTACTTCCATTTTTTCTTGTGATATAAATAATATACAATATCATCCCCATATATGTCATCCTTATCCAATTATAAAATAGAAGTCCTGAAACCAAAAAAATTGGAATATTTTTGAGGTAAAACGGGGTGAATCACTTCTGAATTTCCTCGCCGAAGCAACTTTAATAGTTCTAGGTACAGAAAATGATAGCATAAATTACAAGATTTTTTTAAGGAAAAACATTCATCTATCTGATTTATATCAGCGATGTTCCCTTATAGATGAGAAGTTTTTAGTCTATTGTTGTTTTTTTACTCCCTGTTATTTCGTTTCCTCTGATGTTATTCTGCTTCATTTGATGCCATGCTAAATTTAAGCTCCTATGGTTCAGGAAAATAGGCTGAAAGCTTCAGAAATGAAGAGTAGATGCTTGGTGGCTTTGGACAGCACAAACATCAGCAAGAATCGTTATACTGATGTCATCCCATGTATGCTAATCAGTTGTCTGTTTGTTTTCTTTGATTTTATATTGCATTATTTTTTCGAAATAATTGGATCAAGCTTCATTGCTCTCAGTTGACAATAACAGGGTTGTTTTGGACCCATGTAAAGACTACAGACCGTCAGCTAAGGGATATATCAATGCAAGCTTTATAGAGGTGGATTCCTACATCCTTCACTTGGAATTATTTAAAAAGCCACTTCCCCTACTTGCTTAGCAAACAATATTGAGTTACAACGCAAAATCTGCTTCTGACCTTTTATACTGCTCTTTTTGATTGAAGATATCTGAAGGGGTGTCTCGGTTTGTTGCAACACAAGGTCCACTAGCACACACCTTTGAAGACTTCTGGGAAATGATAATCCAGCAACGCTGTCCTGTCATTGTGATGCTTACACGATTGGTTGACAATTACAAGGTATTCAATTGTTTAGACTAAGGTATACTTGCTTTGCAACCAAAATAAGTAAACATTTTATGACTATAGTCTGATCTATAATTTTCTTTATGGAAGAGAGAACCGACACTTTTACCTTTTTCAGTTTCTTCATTTGTAACCCCCTCCCACACACACACAGAAGTAGACCTGGCATTTTTATGCATTGAAGAAGTTGCAAATGAATCTTTGTTGGGTCTTGAACTTTTATCTTAAGATACAAAACCGAAGCCAGGAAGCCTGGCATGGAAAGGCTCAAGAAAAAAGTATCTTACAAATATACCTTTCATGCGTTCGCGCATAGAGCTTTGGTATAGCACTAAGGGCGCTACACGCTATGTTTGGGTTAGCGCTCGTCATGTGTTTGAACTTTGTTGCGGACAAAAGGTTGGAATTTAAGTGAGGAATAATAGAGGTTTGACCATTACTCAAGGAGTTTCGAACTATTTGCTCATGGACGTGGAAAATTTTCTGGTTATTATAAAAAGATGTTCCTTTTGTTCCTCCATCTTTGCTCCTAAACCTGCGATACTGAAAGGCTAATGTTGGTATTGCTAATTAGCATCCTCATTACTTCATGTGTTCTTTCCTCATTTCTTTTTTGGCTCCAGCGTCAAGCAGGGTGTCATGGGTTTAAGGTTTGTACTTTGCTAAATACTTGTGACTTGAACATATCTTGCTACTCTATACCTATTCTTCTTTCTTCAAATATGCATGAGCTTGAACTTAGATTGAATATTCTACGTGGATATTGAGTAATCTTATGGACATTGCGCATTGTCAAGTTTGTGATCTAGAGATGAAAATATAGATTGGAGGGAGCAATTGTTGCCAGAGGAACTAGCATATGCGGGTGTAGGATCAAATTAGTATTCAATCACAACAACAATAATAACGCCTCAGTCCCAAATAAATTAGGGATCGGCTATATGAATCACTGGCCATGTTTCCATTCTCATCTCAGGACAATATTATACAAATTAGAAATAGTAAAGTAAAATGTACTAAAAGTTCTATATATATTTTTCGTTTAGACTCATCTTGGACCAGTATTATGCAAAATAAAAATAGAAGTAAAATCTACTAGACGTTCTCTATATTTCAAATTATATATAGAATCAGAATTCAAGAAAAATGGTTAGAATTAGAGATTTATCTCTTTCAGCAAAGGAGTTCTATTCATTTTGTTGGGACATCATCTTTTTTGCATCTGTGTTTTGTCTTCTATTTTTCATATTAGATTTCAGGAGCCCCTCTTAGAAGCACACCGAAGCCTGAACAACTTTGTCTTATTCAAATAGAATAGTGTTGTCTCAGGATATTGTGGGCTAGGGCTTCTGAGTTGACGCTGGGTCATATGATCTTTGGAGGAATTAGAGTAGTCTGATGTAGAAAACCCTTTTTACCTTTCTGATATGGTTTGTGCCTCACATCTTGTCTCAATTGCATTTCCAATCTTTACCAGATAAATGGAAGCAATTAAAAGGTAGGAAGATGTGTTCTCGCTGCATGGTCGTTATCCTGAGTCTGTAATTTTTTGACCAGTATCGGAATTGCTATTCCCTACTTTAGTCAGTTTTCAGACTTGTTAACTCTCGAGTCTATTTTAGCATTTTGTTCTAGTGAGTTCCCACTTGAAATATAAGTGATTCCTGTTGACCTATATTCAGTATTAGCAGTTTTATATTTACCTTCTCGTTTGATGAAATCAAATGCAGATGGTGAAGTGTGGGGACTACTTTCAGGCAGAGGATGGGCCTAGAACATTTGGCAATATATGTATTGTGACAAAATATATGACGAGTGATGCCTCCTTAGTGTTGCGAACTCTGGAGGTGAACTATATTGAGGTTAGTAAATTCTTGTCAGCTCTTGTATGGTACAAGAAATAAACATGAATGAAAATATCTTATCTTGTCATTGACCGTTGAGTTTGGAACCAGCTTAAGAAATCTTTTAACCAATATCTGTGATGGAGGATGGTTGAATTTGACGGTTTCATACTTAATTTCTGCACTGTATGTATACACAGAGTTGGCTTGCATTGTATTACAACAATAGATTTTCAGTGTCCTGTTATAAGCTCCGTTCTATTAAATTTGATGTCCTGAAAAGAAACACCTGATTACCTTAGAAGGAATTTAGTTTTCATTTTTAATATAGATTTTCCGTGTTACTCTTGCACGCTGAATATGGTAGTTTTCATTGTTCACCATGTCTTGTTTCTACTGCTGCCTTACTTTCCGTAACTTACAGAACTTCTTTAAGTGATGCAATGTCCTCTGATCAGTCCAAATCCTTTCTTGTTGGCTATATCTCGAATCGGTCTTGACTTTGGATGGTTCCTTATCCTTGAAGCTGAGTATTATCAGTTTCTTTGTTGTGTTATATACCCAAGATTTGCTTTCTTTTTTCTTTTAACATTCTATTTTTTTTCAGAACTGTCATAAAATCATTGTTCTCAGGGGCTCTACTGAAGTAGATCCTATATCGTTAATTTCTGGGTTTTTCTTCCCCTATGGTTCCTCAAAGTTGATATATAGAACGAATTTTAATGAGAGACAATTAATTGATGCAGTTTCATCTAGGATTGCACTGATTATCTTCATAAAGTTATTTATTTTGGTTCACATCTCCTGATAAAAATGCTTGTACTGAATTTTAAATCTGGTTTAGCAAGAGTGGACTGCTGAATATTATCACGCCCCTTTGAAATAAACTGTGTCAATAAGTTGAACTTGAACAATTTGCAGAAATTTGGTGATTCTTGGGTAAAATCCATAATTCATTCGATAAGGGTAGACCTCATTATATTCTCGCGAACTTCTTTCAATACATGCAATCTTTTCAAAATCTCCATCGTACCTAAACTTGGCAGTTACTTCGTATTCTATTGAAGATTCTGCTTTGAATTCTGAATATCTGCTGTCATCAGGAGCTTATTTGTACCAAGTTCTATCTGTCTTTTCACTACATCCTCCATCAAATCTAAATATAAGATAATTCCATAAGAAATATATTCCTTCAAGTTCTCTATTGTTCATAAATAGTTTGCTTATCATTTTCTGTGCACTCTCTCTGTTCCACATTATATGACACTGTACTATTTGGAGAGTCAGACAGCTTTTCTTTAACCACCAACTCTTTCATGTGCTTTAATCTTATATTTTTAAATTATAAGGAGTTGTAATTTATAGTGCTTTCTATCTAGCTTAATTATTTAAAATCTTATTTTAGCAAGATTAAGAAGTAAGGTTGCCCCTCATACTTTGAGCCAACTCATCCTTTTTCAAATGGAGGGGGCAGTATCTATGAATTTTCTAACGTAAAGATCTTTATATCTTCTGGTATCCAGAGTATATTCAGTCCCTTCCTTCTTTTTAATACATCTCCATAATGCTATTTATCTTTTGCACTTATATTTTTTATATTTCTTATTATCTTTTGTGCTCTCTGGATAATGTACAATGATATGAAGTTACAAGTTAAATTTATAATAATGTACAATGATATGCTCCTACTTTCTCATTTCCTGTACGGCATTTTTCTTTTAGCCTATTTACATATTGATATTTTCTCTTTGTATCTTAATGTTGTCCTTGTTAACAGCTCTACCTTCTTTTACTTACCCCGATCTCGCAGATATTTCCTAATGATGACACCATATCCTCAATCCGGTTAGTTCTTAACAAATTAGTATTCACAATTTGTGAGGGTCGTTCTAGCTATATAAGAAATCCTTGACTAATAATAACATAATAAGATAAATAACTTACTTCAGAAATCAGTAATTGAATAAGTATTTGATCCATTGCATAACCATTTCAGTATTTAAGTTCAAGTAAACCATAGGATATATTCTTGCTGGTTTTCTAACAACTGGTTGATATTTATACCTAGTTTGCGTATCATTTTTTCATGATAAGGTAAAGTATATTATTGACAATTGTGGAAACCCCTATACAAGTAGTACACCAAAAAGGAAGAACCTACACCAAAATATGGTTCTCAAAAGAGACCCAATCCTCTCTACCATTAGGGTGCTTATCATTTTTTCTTAAATCAAATTTTCTTCTATCTGTATCTTCTATCTATATGTTTTCTAATACAAGGATCTTCATCATATCTTCTGTCATCAAGAGTATATTCATAGTGTCATACAGAGTCCTATCTATTTTCCATCAGTGTTGAGCCCATTGCAGATTTCAAAATCATTTTTAACACCTTTAAATCTGCCAATAAGATACCCTTCAAGGAGCTCTTTCCTTTTCTTAATTCTGCTCCCATCTACCTCAGTGGCAAAACTCTGTGATATCGCTGATGCTTCTTTGTTCATTTCTGGTCAACTATTTAACTGGGCTGCTTCAGCATAGAAATATGCTGAGAGGTCTAGTTAGTCTCTTAACCCTTGTCTGTGAATATCTTGTTATTAGCTAAGTCCTGGCACGATAATCACACTTCTTCAGACTCCCTGGTAACTTAGTGTACTCATATATTTCCATACCTGTTATAAGTTTTATGGCACTACATATTCATGTGCTTGTTCCTTCTCACTCAATTTCCTGTAGATCTCCACTGTTCTTTTGGATGCTAGCATAACCTTTGGCAGATCCATAATAGGATCTCTCTGCTGACCGTCAATCTCGACTAAGAATTTCCTTCTCTCGATCTATTCTTAACAGACTAACAGTATTCATACTCCGCAGTGGTTTCTATAATGTCAAGGCATTGATTCCTGGCTGTATAGAAGTCTCTCCCCATTAACTGTTTACGTGCTAAGTTTTCAGTCAATCAGTTTTCTAGCCACCATGCCTTAGGCGTAACTTACTGAGTGATCCCCAAATACAAAGTGCGATGAGAGAGAAAATCCTATTGCTTCTGGAATGTTGAGCTAATTGTGGATGCGGGAGTTCACCTTCAGAGTATCTGAAACTGGATCTTGTGGTTGAAGAGTGTTTCTCATATTAACATGAAGTTGGCTCTGTCCCAGCAGCACATGTAAACACGGAGCGTCTAAGGTCTGTGCAAGATAAGTTTTAGAAAAGCGCTAAGTAGTTTTAGGCTAAGTTGTGTGGACTCTTCACTTTCGATGCCGCACCTGTGTTGGATTCTCCAAAAATACTCTGCTTTTGGAGATTCTGACATGCACCCGTTGGCATTTTTGAAGAGTCCAAGCAACATAGGTTTAGGTGAATGTTTCCCTGGTCAATCCTGCATGTTAGATTAAGGTTATGATCTTTAATAATTATATCTTTATGCCTTTATATTTTACATATGTATATTAAGTACTAGTCAGTAGTGCTGGTGTGATTGCTTATACTCAACCACAACTACACCTCAGTCCCAAACAAATTGGGGTCGGCAAGGATTGCTTGTATTCAATCCCTTCAAATTTGATTTCTCTCTCCCTTGTAAGACCCAGCCCATTATCCCAATATTAGCTGGACCTGATGGGGTGACGTCGTTTTATTCCCCTATCTTCCAGCGCCAATAGTCATCTCTATTTAGACTCAACTTTGATAGATCTTTTGTTCTGTTATGTAGAAGCTAAAATACCCACCTGATCTGCTTCTCTTACTATGTGCCAGTCAGAAGAACCACCTTTGTGTGTTTTACACATTCAGTA</genome_strand>
        <mrna_strand>GCATTTAAGCAGAAAAGGTGTCACTCTCCGGACCAAAATTGCCTCAGAGTTCTCCACTTTGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATAGGCTGAAAGCTTCAGAAATGAAGAGTAGATGCTTGGTGGCTTTGGACAGCACAAACATCAGCAAGAATCGTTATACTGATGTCATCCCAT........................................................................................TTGACAATAACAGGGTTGTTTTGGACCCATGTAAAGACTACAGACCGTCAGCTAAGGGATATATCAATGCAAGCTTTATAGAG..............................................................................................................................ATATCTGAAGGGGTGTCTCGGTTTGTTGCAACACAAGGTCCACTAGCACACACCTTTGAAGACTTCTGGGAAATGATAATCCAGCAACGCTGTCCTGTCATTGTGATGCTTACACGATTGGTTGACAATTACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGAAGTGTGGGGACTACTTTCAGGCAGAGGATGGGCCTAGAACATTTGGCAATATATGTATTGTGACAAAATATATGACGAGTGATGCCTCCTTAGTGTTGCGAACTCTGGAGGTGAACTATATTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAAGAACCACCTTTGTGTGTTTTACACATTCAGTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E255055" ref_strand="+" ref_description="SGN-E255055 [cLEG-31-C14]">
      <seq>gcatttaagcagaaaaggtgtcactctccggacaaaattgcctcagagttctccactttgcaggaaaataggctgaaagcttcagaaatgaagagtagatgcttggtggctttggacagcacaaacatcagcaagaatcgttatactgatgtcatcccatttgacaataacagggttgttttggacccatgtaaagactacagaccgtcagctaagggatatatcaatgcaagctttatagagatatctgaaggggtgtctcggtttgttgcaacacaaggtccactagcacacacctttgaagacttctgggaaatgataatccagcaacgctgtcctgtcattgtgatgcttacacgattggttgacaattacaagatggtgaagtgtggggactactttcaggcagaggatgggcctagaacatttggcaatatatgtattgtgacaaaatatatgacgagtgatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0080C09.1" temp_strand="-" temp_description="C00HBa0080C09.1  CU928194.8 htgs_phase:3 submitted_to_sgn_as:C00HBa0080C09 sequenced_by:sanger upload_account_name:uk">
        <position start="83679" stop="77820"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83379" g_stop="83317" g_length="63"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="63" r_length="63" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83316" i_stop="80476" i_length="2841">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80475" g_stop="80379" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="64" r_stop="160" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80378" i_stop="80291" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80290" g_stop="80208" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="161" r_stop="243" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80207" i_stop="80082" i_length="126">
            <donor d_prob="0.846" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80081" g_stop="79947" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="244" r_stop="378" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79946" i_stop="78211" i_length="1736">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78210" g_stop="78120" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="379" r_stop="469" r_length="91" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0080C09.1" gen_strand="-" ref_id="SGN-E255055" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>469</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0080C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E255055" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83379" e_stop="83317"/>
          <exon e_start="80475" e_stop="80379"/>
          <exon e_start="80290" e_stop="80208"/>
          <exon e_start="80081" e_stop="79947"/>
          <exon e_start="78210" e_stop="78120"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GCATTTAAGCAGAAAAGGTGTCACTCTCCGGACAAAATTGCCTCAGAGTTCTCCACTTTGCAGGTTTCCTTTTTCTTTTTTCCTGTTATTTTGTGGCTTTCGGCTATTCATTTGAAAACCTGTGTGGCAATATTTTGATGCTTAGTTTGAAGTTTACCGTAATGTTCTTGCAAAAAGGATACTAAGATATAGTATTATACTTGTACATTCAGCTGATATTAGCAGCATCTTAGTTTACTTGTATTAGTTACAGTTAGCTGTTAGCTTAACCAACAATTAGTTAGAGATATTTTTAGCCAGCTAGAGACACGGATATAAACACAACGTACAAAAATTGGAGCTCAGATTGAGCCCTAATTGTCCCTTGCTTTACATTTTAGAGCCTGTTTGGCTCAGCTTAAAAGCTGGTCAAACTACTTGCTGGTTTTTGACTTATTTAGCTGTTTGGCAATACTCAAAACAGCTTATTTTAAGTTAAAAAAAACTTATTTTAAGCCAAAAGTTAAAAGCTGGGGTAGGGGTGCTTTTTTATTTTTAGCTTATAAGCTGTTTTAAGTTGACCACATTTTTATCTTTTTGTGCTTAATATTTTTATACAATCTCCAAATTACCCATATAACCCTAACATTTCTTTCTTTCATTTATCCTTTTCACGTTTGACATAACAACTGCTTATTTTAAAAATAAGTTTCAGCACTTTTAAAAGTACTTTTTTAAAGCTGCTTTTATTAAGCCCATCCAAACGGGCCCTTAATATGGTGTCAGAGCTCTAGAGTATTTCCTTGAGCTGTTCTTCAATTGGCACACCTGGTGTTAATTTCTGTAGAAATAGAAGAAATTGAACTCTTGTATCTTCCAAATCAGCTGTTTTTGTCTTCAACTTTATCAATCATGTTATTCCTCATGGCTATGATCAGAATGAGCAATCCACTTTTAATCCAATTAGTCTCTTTACGTGCATTTTTCTGACTGTAGTAACCTTCCTTTTGATGGGATACGGTACAAATACTTTAGAAGAGGTTACTAGGATCTTTTTCCGTCAAGAATAAATTAGATCTTATCCTTGGAGACTGTGAAAGACCAGGTACGGAACCCCACAACTTGATCAGTTAAAGAGGTTCGATGATATGGTCAATTTGTGGATTTTGAATGCTCTTGCTAAAGAAGTTGCTGATAGTGTGGAATATGTCAAGGAGTCAGTTGAATTATGGAAGGAATCAGAAGATCACGATCAAACAAATGGTGCTAAGTTGTACCTAATTGAGAACGAGTTAATGACAGGACTCAAGGGTGCTTGATTACTAGCTATTACACAAAAATGAAGAAACTCTGGGAGGAATTGAACACCTTGAGTGCTAAAACACAAGATAGTTTTCAGTACACTTGTGATTCAAGGAAAATATGCATAAGGCAGAACAAGATAAGAGACTAACACAATTTCTCATGGGCTTCAATAGGTGTATATATTGAGAGGAAGCATACTTGTGATAAATTCACTGCTTCCGTAACACATGCTTTTTCCCTGCTGATTCAGGAGGAAAAACAAAAAGAGCTTCGGTCTAATAATAAGTTGGATGTACTAAGGAGTAAGGACAAGTGCTATAAACTGCATGGATATTCTCAAAATTCCAATCAAAGCCTAAAGGATTTCAATCAGAATTCTAAGATCAACAAGGGAAAAAGAACTGTGGCAAAATGTGCATTGTATACCAGTGGAAATGATATATGTTAAGGTAAAGGAACCTAACCATTAAGATGAGAATCAAAATGTCAGCTTCACTAAGTAGCAATATGGATAAATTGTTTATCTGTTACAACATTTTCAATTTGGCAATGCAGGAGAGAACTCAAACCACTTTATCTCACTACTGAAGTTGTGAACTTATCCGATATTATAGCTTGTTCAATTTCTATTGAATTTAAGAAAGTTCCATGTAAATGTTTCAAAACAAGGGCTGACTCATGAAATTTTAGATTCATGAGCCTCAAACCACATGACGTTCTACTCATTAGAACCCTATTATCAAACATTAGACTCAGTTTCTGTAGAAAAAATAGATGGCTGGCATCTCACCAACAGGGATGGAAAGAACTTCGGGCTTTACCTGGTATGTTACCAGACACATCCTGTTAAGGTTTCCCACTTTGGTAATCTTACCCAATTTTATTTTATTTATATTGTTAAGGTTCTCTCTTTTATGTTTATTTTAAAGAAAATTAGAACTTCACCATATGCTTTATTGGTCACCATTCCAAATGGTTATAAAGTGAAGGTGATAGAAATTGGAAATGTGACAATTGCACCCAACATCACTTTGCACAAAGTGCTGTTTGTGCCTCTCATATACATATTATTTTTATTCATTTCTGATGGTATCCTTAATGCGTTGTCTCATTTACTAACACTTAATGCCAACTGCATACCCCATCAATGAAGAGATCTTTGGAGATCGGTAAGGTTAAAAGACCTGTTTCTTTTTTTTTTTTTTGGGATTGCTTAAGAGTGATACTTATGTTTATGCAGTCAATTCTTGTACTTCCATTTTTTCTTGTGATATAAATAATATACAATATCATCCCCATATATGTCATCCTTATCCAATTATAAAATAGAAGTCCTGAAACCAAAAAAATTGGAATATTTTTGAGGTAAAACGGGGTGAATCACTTCTGAATTTCCTCGCCGAAGCAACTTTAATAGTTCTAGGTACAGAAAATGATAGCATAAATTACAAGATTTTTTTAAGGAAAAACATTCATCTATCTGATTTATATCAGCGATGTTCCCTTATAGATGAGAAGTTTTTAGTCTATTGTTGTTTTTTTACTCCCTGTTATTTCGTTTCCTCTGATGTTATTCTGCTTCATTTGATGCCATGCTAAATTTAAGCTCCTATGGTTCAGGAAAATAGGCTGAAAGCTTCAGAAATGAAGAGTAGATGCTTGGTGGCTTTGGACAGCACAAACATCAGCAAGAATCGTTATACTGATGTCATCCCATGTATGCTAATCAGTTGTCTGTTTGTTTTCTTTGATTTTATATTGCATTATTTTTTCGAAATAATTGGATCAAGCTTCATTGCTCTCAGTTGACAATAACAGGGTTGTTTTGGACCCATGTAAAGACTACAGACCGTCAGCTAAGGGATATATCAATGCAAGCTTTATAGAGGTGGATTCCTACATCCTTCACTTGGAATTATTTAAAAAGCCACTTCCCCTACTTGCTTAGCAAACAATATTGAGTTACAACGCAAAATCTGCTTCTGACCTTTTATACTGCTCTTTTTGATTGAAGATATCTGAAGGGGTGTCTCGGTTTGTTGCAACACAAGGTCCACTAGCACACACCTTTGAAGACTTCTGGGAAATGATAATCCAGCAACGCTGTCCTGTCATTGTGATGCTTACACGATTGGTTGACAATTACAAGGTATTCAATTGTTTAGACTAAGGTATACTTGCTTTGCAACCAAAATAAGTAAACATTTTATGACTATAGTCTGATCTATAATTTTCTTTATGGAAGAGAGAACCGACACTTTTACCTTTTTCAGTTTCTTCATTTGTAACCCCCTCCCACACACACACAGAAGTAGACCTGGCATTTTTATGCATTGAAGAAGTTGCAAATGAATCTTTGTTGGGTCTTGAACTTTTATCTTAAGATACAAAACCGAAGCCAGGAAGCCTGGCATGGAAAGGCTCAAGAAAAAAGTATCTTACAAATATACCTTTCATGCGTTCGCGCATAGAGCTTTGGTATAGCACTAAGGGCGCTACACGCTATGTTTGGGTTAGCGCTCGTCATGTGTTTGAACTTTGTTGCGGACAAAAGGTTGGAATTTAAGTGAGGAATAATAGAGGTTTGACCATTACTCAAGGAGTTTCGAACTATTTGCTCATGGACGTGGAAAATTTTCTGGTTATTATAAAAAGATGTTCCTTTTGTTCCTCCATCTTTGCTCCTAAACCTGCGATACTGAAAGGCTAATGTTGGTATTGCTAATTAGCATCCTCATTACTTCATGTGTTCTTTCCTCATTTCTTTTTTGGCTCCAGCGTCAAGCAGGGTGTCATGGGTTTAAGGTTTGTACTTTGCTAAATACTTGTGACTTGAACATATCTTGCTACTCTATACCTATTCTTCTTTCTTCAAATATGCATGAGCTTGAACTTAGATTGAATATTCTACGTGGATATTGAGTAATCTTATGGACATTGCGCATTGTCAAGTTTGTGATCTAGAGATGAAAATATAGATTGGAGGGAGCAATTGTTGCCAGAGGAACTAGCATATGCGGGTGTAGGATCAAATTAGTATTCAATCACAACAACAATAATAACGCCTCAGTCCCAAATAAATTAGGGATCGGCTATATGAATCACTGGCCATGTTTCCATTCTCATCTCAGGACAATATTATACAAATTAGAAATAGTAAAGTAAAATGTACTAAAAGTTCTATATATATTTTTCGTTTAGACTCATCTTGGACCAGTATTATGCAAAATAAAAATAGAAGTAAAATCTACTAGACGTTCTCTATATTTCAAATTATATATAGAATCAGAATTCAAGAAAAATGGTTAGAATTAGAGATTTATCTCTTTCAGCAAAGGAGTTCTATTCATTTTGTTGGGACATCATCTTTTTTGCATCTGTGTTTTGTCTTCTATTTTTCATATTAGATTTCAGGAGCCCCTCTTAGAAGCACACCGAAGCCTGAACAACTTTGTCTTATTCAAATAGAATAGTGTTGTCTCAGGATATTGTGGGCTAGGGCTTCTGAGTTGACGCTGGGTCATATGATCTTTGGAGGAATTAGAGTAGTCTGATGTAGAAAACCCTTTTTACCTTTCTGATATGGTTTGTGCCTCACATCTTGTCTCAATTGCATTTCCAATCTTTACCAGATAAATGGAAGCAATTAAAAGGTAGGAAGATGTGTTCTCGCTGCATGGTCGTTATCCTGAGTCTGTAATTTTTTGACCAGTATCGGAATTGCTATTCCCTACTTTAGTCAGTTTTCAGACTTGTTAACTCTCGAGTCTATTTTAGCATTTTGTTCTAGTGAGTTCCCACTTGAAATATAAGTGATTCCTGTTGACCTATATTCAGTATTAGCAGTTTTATATTTACCTTCTCGTTTGATGAAATCAAATGCAGATGGTGAAGTGTGGGGACTACTTTCAGGCAGAGGATGGGCCTAGAACATTTGGCAATATATGTATTGTGACAAAATATATGACGAGTGATG</genome_strand>
        <mrna_strand>GCATTTAAGCAGAAAAGGTGTCACTCTCCGGACAAAATTGCCTCAGAGTTCTCCACTTTGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATAGGCTGAAAGCTTCAGAAATGAAGAGTAGATGCTTGGTGGCTTTGGACAGCACAAACATCAGCAAGAATCGTTATACTGATGTCATCCCAT........................................................................................TTGACAATAACAGGGTTGTTTTGGACCCATGTAAAGACTACAGACCGTCAGCTAAGGGATATATCAATGCAAGCTTTATAGAG..............................................................................................................................ATATCTGAAGGGGTGTCTCGGTTTGTTGCAACACAAGGTCCACTAGCACACACCTTTGAAGACTTCTGGGAAATGATAATCCAGCAACGCTGTCCTGTCATTGTGATGCTTACACGATTGGTTGACAATTACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGAAGTGTGGGGACTACTTTCAGGCAGAGGATGGGCCTAGAACATTTGGCAATATATGTATTGTGACAAAATATATGACGAGTGATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E213472" ref_strand="+" ref_description="SGN-E213472 [cLEC-71-B10]">
      <seq>tcggagtcggagccggagatcggccatggctgccgccggtaatccgttatcctccgctgtcactttcacagagccgccacctgttgctcctggtactgctaataaatctttggatttctctgctgattcagttctacagagaatcgtactgtcgcctgatcagcgtagtcactgtttggaagcacttaaagcatttaagcagaaaaggtgtcactctccggacaaaattgcctcagagttctccactttgcaggaaaataggctgaaagcttcagaaatgaagagtagatgcttggtggctttggacagcacaaacatcagcaagaatcgttatactgatgtcatcccatttgacaataacagggttgttttggacccatgtaaagactacagaccgtcagctaagggatatatcaatgcaagctttatagagatatctgaaggggtgtctcggtttgttgcaacacaaggtccactagcacacacctttgaagacttctgggaaatgataatccagcaacgctgtcctgtcattgtgatgcttacacgattggttgacaattacaagatggtgaagtgtggggactactttcaggcagaagatgggcctagaacatttggcaatatatgtattgtgacaaaatatatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0080C09.1" temp_strand="-" temp_description="C00HBa0080C09.1  CU928194.8 htgs_phase:3 submitted_to_sgn_as:C00HBa0080C09 sequenced_by:sanger upload_account_name:uk">
        <position start="83869" stop="77829"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83569" g_stop="83317" g_length="253"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="253" r_length="253" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83316" i_stop="80476" i_length="2841">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80475" g_stop="80379" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="254" r_stop="350" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80378" i_stop="80291" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80290" g_stop="80208" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="351" r_stop="433" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80207" i_stop="80082" i_length="126">
            <donor d_prob="0.846" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80081" g_stop="79947" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="434" r_stop="568" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79946" i_stop="78211" i_length="1736">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78210" g_stop="78129" g_length="82"/>
          <reference_exon_boundary r_type="cDNA" r_start="569" r_stop="650" r_length="82" r_score="0.988"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0080C09.1" gen_strand="-" ref_id="SGN-E213472" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>650</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0080C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E213472" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83569" e_stop="83317"/>
          <exon e_start="80475" e_stop="80379"/>
          <exon e_start="80290" e_stop="80208"/>
          <exon e_start="80081" e_stop="79947"/>
          <exon e_start="78210" e_stop="78129"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TCGGAGTCGGAGCCGGAGATCGGCCATGGCTGCCGCCGGTAATCCGTTATCCTCCGCTGTCACTTTCACAGAGCCGCCACCTGTTGCTCCTGGTACTGCTAATAAATCTTTGGATTTCTCTGCTGATTCAGTTCTACAGAGAATCGTACTGTCGCCTGATCAGCGTAGTCACTGTTTGGAAGCACTTAAAGCATTTAAGCAGAAAAGGTGTCACTCTCCGGACAAAATTGCCTCAGAGTTCTCCACTTTGCAGGTTTCCTTTTTCTTTTTTCCTGTTATTTTGTGGCTTTCGGCTATTCATTTGAAAACCTGTGTGGCAATATTTTGATGCTTAGTTTGAAGTTTACCGTAATGTTCTTGCAAAAAGGATACTAAGATATAGTATTATACTTGTACATTCAGCTGATATTAGCAGCATCTTAGTTTACTTGTATTAGTTACAGTTAGCTGTTAGCTTAACCAACAATTAGTTAGAGATATTTTTAGCCAGCTAGAGACACGGATATAAACACAACGTACAAAAATTGGAGCTCAGATTGAGCCCTAATTGTCCCTTGCTTTACATTTTAGAGCCTGTTTGGCTCAGCTTAAAAGCTGGTCAAACTACTTGCTGGTTTTTGACTTATTTAGCTGTTTGGCAATACTCAAAACAGCTTATTTTAAGTTAAAAAAAACTTATTTTAAGCCAAAAGTTAAAAGCTGGGGTAGGGGTGCTTTTTTATTTTTAGCTTATAAGCTGTTTTAAGTTGACCACATTTTTATCTTTTTGTGCTTAATATTTTTATACAATCTCCAAATTACCCATATAACCCTAACATTTCTTTCTTTCATTTATCCTTTTCACGTTTGACATAACAACTGCTTATTTTAAAAATAAGTTTCAGCACTTTTAAAAGTACTTTTTTAAAGCTGCTTTTATTAAGCCCATCCAAACGGGCCCTTAATATGGTGTCAGAGCTCTAGAGTATTTCCTTGAGCTGTTCTTCAATTGGCACACCTGGTGTTAATTTCTGTAGAAATAGAAGAAATTGAACTCTTGTATCTTCCAAATCAGCTGTTTTTGTCTTCAACTTTATCAATCATGTTATTCCTCATGGCTATGATCAGAATGAGCAATCCACTTTTAATCCAATTAGTCTCTTTACGTGCATTTTTCTGACTGTAGTAACCTTCCTTTTGATGGGATACGGTACAAATACTTTAGAAGAGGTTACTAGGATCTTTTTCCGTCAAGAATAAATTAGATCTTATCCTTGGAGACTGTGAAAGACCAGGTACGGAACCCCACAACTTGATCAGTTAAAGAGGTTCGATGATATGGTCAATTTGTGGATTTTGAATGCTCTTGCTAAAGAAGTTGCTGATAGTGTGGAATATGTCAAGGAGTCAGTTGAATTATGGAAGGAATCAGAAGATCACGATCAAACAAATGGTGCTAAGTTGTACCTAATTGAGAACGAGTTAATGACAGGACTCAAGGGTGCTTGATTACTAGCTATTACACAAAAATGAAGAAACTCTGGGAGGAATTGAACACCTTGAGTGCTAAAACACAAGATAGTTTTCAGTACACTTGTGATTCAAGGAAAATATGCATAAGGCAGAACAAGATAAGAGACTAACACAATTTCTCATGGGCTTCAATAGGTGTATATATTGAGAGGAAGCATACTTGTGATAAATTCACTGCTTCCGTAACACATGCTTTTTCCCTGCTGATTCAGGAGGAAAAACAAAAAGAGCTTCGGTCTAATAATAAGTTGGATGTACTAAGGAGTAAGGACAAGTGCTATAAACTGCATGGATATTCTCAAAATTCCAATCAAAGCCTAAAGGATTTCAATCAGAATTCTAAGATCAACAAGGGAAAAAGAACTGTGGCAAAATGTGCATTGTATACCAGTGGAAATGATATATGTTAAGGTAAAGGAACCTAACCATTAAGATGAGAATCAAAATGTCAGCTTCACTAAGTAGCAATATGGATAAATTGTTTATCTGTTACAACATTTTCAATTTGGCAATGCAGGAGAGAACTCAAACCACTTTATCTCACTACTGAAGTTGTGAACTTATCCGATATTATAGCTTGTTCAATTTCTATTGAATTTAAGAAAGTTCCATGTAAATGTTTCAAAACAAGGGCTGACTCATGAAATTTTAGATTCATGAGCCTCAAACCACATGACGTTCTACTCATTAGAACCCTATTATCAAACATTAGACTCAGTTTCTGTAGAAAAAATAGATGGCTGGCATCTCACCAACAGGGATGGAAAGAACTTCGGGCTTTACCTGGTATGTTACCAGACACATCCTGTTAAGGTTTCCCACTTTGGTAATCTTACCCAATTTTATTTTATTTATATTGTTAAGGTTCTCTCTTTTATGTTTATTTTAAAGAAAATTAGAACTTCACCATATGCTTTATTGGTCACCATTCCAAATGGTTATAAAGTGAAGGTGATAGAAATTGGAAATGTGACAATTGCACCCAACATCACTTTGCACAAAGTGCTGTTTGTGCCTCTCATATACATATTATTTTTATTCATTTCTGATGGTATCCTTAATGCGTTGTCTCATTTACTAACACTTAATGCCAACTGCATACCCCATCAATGAAGAGATCTTTGGAGATCGGTAAGGTTAAAAGACCTGTTTCTTTTTTTTTTTTTTGGGATTGCTTAAGAGTGATACTTATGTTTATGCAGTCAATTCTTGTACTTCCATTTTTTCTTGTGATATAAATAATATACAATATCATCCCCATATATGTCATCCTTATCCAATTATAAAATAGAAGTCCTGAAACCAAAAAAATTGGAATATTTTTGAGGTAAAACGGGGTGAATCACTTCTGAATTTCCTCGCCGAAGCAACTTTAATAGTTCTAGGTACAGAAAATGATAGCATAAATTACAAGATTTTTTTAAGGAAAAACATTCATCTATCTGATTTATATCAGCGATGTTCCCTTATAGATGAGAAGTTTTTAGTCTATTGTTGTTTTTTTACTCCCTGTTATTTCGTTTCCTCTGATGTTATTCTGCTTCATTTGATGCCATGCTAAATTTAAGCTCCTATGGTTCAGGAAAATAGGCTGAAAGCTTCAGAAATGAAGAGTAGATGCTTGGTGGCTTTGGACAGCACAAACATCAGCAAGAATCGTTATACTGATGTCATCCCATGTATGCTAATCAGTTGTCTGTTTGTTTTCTTTGATTTTATATTGCATTATTTTTTCGAAATAATTGGATCAAGCTTCATTGCTCTCAGTTGACAATAACAGGGTTGTTTTGGACCCATGTAAAGACTACAGACCGTCAGCTAAGGGATATATCAATGCAAGCTTTATAGAGGTGGATTCCTACATCCTTCACTTGGAATTATTTAAAAAGCCACTTCCCCTACTTGCTTAGCAAACAATATTGAGTTACAACGCAAAATCTGCTTCTGACCTTTTATACTGCTCTTTTTGATTGAAGATATCTGAAGGGGTGTCTCGGTTTGTTGCAACACAAGGTCCACTAGCACACACCTTTGAAGACTTCTGGGAAATGATAATCCAGCAACGCTGTCCTGTCATTGTGATGCTTACACGATTGGTTGACAATTACAAGGTATTCAATTGTTTAGACTAAGGTATACTTGCTTTGCAACCAAAATAAGTAAACATTTTATGACTATAGTCTGATCTATAATTTTCTTTATGGAAGAGAGAACCGACACTTTTACCTTTTTCAGTTTCTTCATTTGTAACCCCCTCCCACACACACACAGAAGTAGACCTGGCATTTTTATGCATTGAAGAAGTTGCAAATGAATCTTTGTTGGGTCTTGAACTTTTATCTTAAGATACAAAACCGAAGCCAGGAAGCCTGGCATGGAAAGGCTCAAGAAAAAAGTATCTTACAAATATACCTTTCATGCGTTCGCGCATAGAGCTTTGGTATAGCACTAAGGGCGCTACACGCTATGTTTGGGTTAGCGCTCGTCATGTGTTTGAACTTTGTTGCGGACAAAAGGTTGGAATTTAAGTGAGGAATAATAGAGGTTTGACCATTACTCAAGGAGTTTCGAACTATTTGCTCATGGACGTGGAAAATTTTCTGGTTATTATAAAAAGATGTTCCTTTTGTTCCTCCATCTTTGCTCCTAAACCTGCGATACTGAAAGGCTAATGTTGGTATTGCTAATTAGCATCCTCATTACTTCATGTGTTCTTTCCTCATTTCTTTTTTGGCTCCAGCGTCAAGCAGGGTGTCATGGGTTTAAGGTTTGTACTTTGCTAAATACTTGTGACTTGAACATATCTTGCTACTCTATACCTATTCTTCTTTCTTCAAATATGCATGAGCTTGAACTTAGATTGAATATTCTACGTGGATATTGAGTAATCTTATGGACATTGCGCATTGTCAAGTTTGTGATCTAGAGATGAAAATATAGATTGGAGGGAGCAATTGTTGCCAGAGGAACTAGCATATGCGGGTGTAGGATCAAATTAGTATTCAATCACAACAACAATAATAACGCCTCAGTCCCAAATAAATTAGGGATCGGCTATATGAATCACTGGCCATGTTTCCATTCTCATCTCAGGACAATATTATACAAATTAGAAATAGTAAAGTAAAATGTACTAAAAGTTCTATATATATTTTTCGTTTAGACTCATCTTGGACCAGTATTATGCAAAATAAAAATAGAAGTAAAATCTACTAGACGTTCTCTATATTTCAAATTATATATAGAATCAGAATTCAAGAAAAATGGTTAGAATTAGAGATTTATCTCTTTCAGCAAAGGAGTTCTATTCATTTTGTTGGGACATCATCTTTTTTGCATCTGTGTTTTGTCTTCTATTTTTCATATTAGATTTCAGGAGCCCCTCTTAGAAGCACACCGAAGCCTGAACAACTTTGTCTTATTCAAATAGAATAGTGTTGTCTCAGGATATTGTGGGCTAGGGCTTCTGAGTTGACGCTGGGTCATATGATCTTTGGAGGAATTAGAGTAGTCTGATGTAGAAAACCCTTTTTACCTTTCTGATATGGTTTGTGCCTCACATCTTGTCTCAATTGCATTTCCAATCTTTACCAGATAAATGGAAGCAATTAAAAGGTAGGAAGATGTGTTCTCGCTGCATGGTCGTTATCCTGAGTCTGTAATTTTTTGACCAGTATCGGAATTGCTATTCCCTACTTTAGTCAGTTTTCAGACTTGTTAACTCTCGAGTCTATTTTAGCATTTTGTTCTAGTGAGTTCCCACTTGAAATATAAGTGATTCCTGTTGACCTATATTCAGTATTAGCAGTTTTATATTTACCTTCTCGTTTGATGAAATCAAATGCAGATGGTGAAGTGTGGGGACTACTTTCAGGCAGAGGATGGGCCTAGAACATTTGGCAATATATGTATTGTGACAAAATATATGA</genome_strand>
        <mrna_strand>TCGGAGTCGGAGCCGGAGATCGGCCATGGCTGCCGCCGGTAATCCGTTATCCTCCGCTGTCACTTTCACAGAGCCGCCACCTGTTGCTCCTGGTACTGCTAATAAATCTTTGGATTTCTCTGCTGATTCAGTTCTACAGAGAATCGTACTGTCGCCTGATCAGCGTAGTCACTGTTTGGAAGCACTTAAAGCATTTAAGCAGAAAAGGTGTCACTCTCCGGACAAAATTGCCTCAGAGTTCTCCACTTTGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATAGGCTGAAAGCTTCAGAAATGAAGAGTAGATGCTTGGTGGCTTTGGACAGCACAAACATCAGCAAGAATCGTTATACTGATGTCATCCCAT........................................................................................TTGACAATAACAGGGTTGTTTTGGACCCATGTAAAGACTACAGACCGTCAGCTAAGGGATATATCAATGCAAGCTTTATAGAG..............................................................................................................................ATATCTGAAGGGGTGTCTCGGTTTGTTGCAACACAAGGTCCACTAGCACACACCTTTGAAGACTTCTGGGAAATGATAATCCAGCAACGCTGTCCTGTCATTGTGATGCTTACACGATTGGTTGACAATTACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGAAGTGTGGGGACTACTTTCAGGCAGAAGATGGGCCTAGAACATTTGGCAATATATGTATTGTGACAAAATATATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E374451" ref_strand="+" ref_description="SGN-E374451 [TUS-38-J8]">
      <seq>gaaaaaaaaaagaacaaaaaaagtcgaaaccacgggcagcgccgtatcagttcggagtcggagccggagatcggccatggctgccgccggtaatccgttatcctccgctgtcactttcacagagccgccacctgttgctcctggtactgctaataaatctttggatttctctgctgattcagttctacagagaatcgtactgtcgcctgatcagcgtagtcactgtttggaagcacttaaagcatttaagcagaaaaggtgtcactctccggacaaaattgcctcagagttctccactttgcaggaaaataggctgaaagcttcagaaatgaagagtagatgcttggtggctttggacagcacaaacatcagcaagaatcgttatactgatgtcatcccatttgacaataacagggttgttttggacccatgtaaagactacagaccgtcagctaagggatatatcaatgcaagctttatagagatatctgaaggggtgtctcggtttgttgcaacacaaggtccactagcacacacctttgaagacttctgggaaatgataatccagcaacgctgtcctgtcattgtgatgcttacacgattggttgacaattacaagatggtgaagtgtggggactactttcaggcagaggatgggcctagaacatttggcaatatatg</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0080C09.1" temp_strand="-" temp_description="C00HBa0080C09.1  CU928194.8 htgs_phase:3 submitted_to_sgn_as:C00HBa0080C09 sequenced_by:sanger upload_account_name:uk">
        <position start="83920" stop="77849"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83620" g_stop="83317" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83316" i_stop="80476" i_length="2841">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80475" g_stop="80379" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="401" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80378" i_stop="80291" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80290" g_stop="80208" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="484" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80207" i_stop="80082" i_length="126">
            <donor d_prob="0.846" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80081" g_stop="79947" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="485" r_stop="619" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79946" i_stop="78211" i_length="1736">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78210" g_stop="78149" g_length="62"/>
          <reference_exon_boundary r_type="cDNA" r_start="620" r_stop="681" r_length="62" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0080C09.1" gen_strand="-" ref_id="SGN-E374451" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>681</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0080C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E374451" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83620" e_stop="83317"/>
          <exon e_start="80475" e_stop="80379"/>
          <exon e_start="80290" e_stop="80208"/>
          <exon e_start="80081" e_stop="79947"/>
          <exon e_start="78210" e_stop="78149"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAAAAAAGAACAAAAAAAGTCGAAACCACGGGCAGCGCCGTATCAGTTCGGAGTCGGAGCCGGAGATCGGCCATGGCTGCCGCCGGTAATCCGTTATCCTCCGCTGTCACTTTCACAGAGCCGCCACCTGTTGCTCCTGGTACTGCTAATAAATCTTTGGATTTCTCTGCTGATTCAGTTCTACAGAGAATCGTACTGTCGCCTGATCAGCGTAGTCACTGTTTGGAAGCACTTAAAGCATTTAAGCAGAAAAGGTGTCACTCTCCGGACAAAATTGCCTCAGAGTTCTCCACTTTGCAGGTTTCCTTTTTCTTTTTTCCTGTTATTTTGTGGCTTTCGGCTATTCATTTGAAAACCTGTGTGGCAATATTTTGATGCTTAGTTTGAAGTTTACCGTAATGTTCTTGCAAAAAGGATACTAAGATATAGTATTATACTTGTACATTCAGCTGATATTAGCAGCATCTTAGTTTACTTGTATTAGTTACAGTTAGCTGTTAGCTTAACCAACAATTAGTTAGAGATATTTTTAGCCAGCTAGAGACACGGATATAAACACAACGTACAAAAATTGGAGCTCAGATTGAGCCCTAATTGTCCCTTGCTTTACATTTTAGAGCCTGTTTGGCTCAGCTTAAAAGCTGGTCAAACTACTTGCTGGTTTTTGACTTATTTAGCTGTTTGGCAATACTCAAAACAGCTTATTTTAAGTTAAAAAAAACTTATTTTAAGCCAAAAGTTAAAAGCTGGGGTAGGGGTGCTTTTTTATTTTTAGCTTATAAGCTGTTTTAAGTTGACCACATTTTTATCTTTTTGTGCTTAATATTTTTATACAATCTCCAAATTACCCATATAACCCTAACATTTCTTTCTTTCATTTATCCTTTTCACGTTTGACATAACAACTGCTTATTTTAAAAATAAGTTTCAGCACTTTTAAAAGTACTTTTTTAAAGCTGCTTTTATTAAGCCCATCCAAACGGGCCCTTAATATGGTGTCAGAGCTCTAGAGTATTTCCTTGAGCTGTTCTTCAATTGGCACACCTGGTGTTAATTTCTGTAGAAATAGAAGAAATTGAACTCTTGTATCTTCCAAATCAGCTGTTTTTGTCTTCAACTTTATCAATCATGTTATTCCTCATGGCTATGATCAGAATGAGCAATCCACTTTTAATCCAATTAGTCTCTTTACGTGCATTTTTCTGACTGTAGTAACCTTCCTTTTGATGGGATACGGTACAAATACTTTAGAAGAGGTTACTAGGATCTTTTTCCGTCAAGAATAAATTAGATCTTATCCTTGGAGACTGTGAAAGACCAGGTACGGAACCCCACAACTTGATCAGTTAAAGAGGTTCGATGATATGGTCAATTTGTGGATTTTGAATGCTCTTGCTAAAGAAGTTGCTGATAGTGTGGAATATGTCAAGGAGTCAGTTGAATTATGGAAGGAATCAGAAGATCACGATCAAACAAATGGTGCTAAGTTGTACCTAATTGAGAACGAGTTAATGACAGGACTCAAGGGTGCTTGATTACTAGCTATTACACAAAAATGAAGAAACTCTGGGAGGAATTGAACACCTTGAGTGCTAAAACACAAGATAGTTTTCAGTACACTTGTGATTCAAGGAAAATATGCATAAGGCAGAACAAGATAAGAGACTAACACAATTTCTCATGGGCTTCAATAGGTGTATATATTGAGAGGAAGCATACTTGTGATAAATTCACTGCTTCCGTAACACATGCTTTTTCCCTGCTGATTCAGGAGGAAAAACAAAAAGAGCTTCGGTCTAATAATAAGTTGGATGTACTAAGGAGTAAGGACAAGTGCTATAAACTGCATGGATATTCTCAAAATTCCAATCAAAGCCTAAAGGATTTCAATCAGAATTCTAAGATCAACAAGGGAAAAAGAACTGTGGCAAAATGTGCATTGTATACCAGTGGAAATGATATATGTTAAGGTAAAGGAACCTAACCATTAAGATGAGAATCAAAATGTCAGCTTCACTAAGTAGCAATATGGATAAATTGTTTATCTGTTACAACATTTTCAATTTGGCAATGCAGGAGAGAACTCAAACCACTTTATCTCACTACTGAAGTTGTGAACTTATCCGATATTATAGCTTGTTCAATTTCTATTGAATTTAAGAAAGTTCCATGTAAATGTTTCAAAACAAGGGCTGACTCATGAAATTTTAGATTCATGAGCCTCAAACCACATGACGTTCTACTCATTAGAACCCTATTATCAAACATTAGACTCAGTTTCTGTAGAAAAAATAGATGGCTGGCATCTCACCAACAGGGATGGAAAGAACTTCGGGCTTTACCTGGTATGTTACCAGACACATCCTGTTAAGGTTTCCCACTTTGGTAATCTTACCCAATTTTATTTTATTTATATTGTTAAGGTTCTCTCTTTTATGTTTATTTTAAAGAAAATTAGAACTTCACCATATGCTTTATTGGTCACCATTCCAAATGGTTATAAAGTGAAGGTGATAGAAATTGGAAATGTGACAATTGCACCCAACATCACTTTGCACAAAGTGCTGTTTGTGCCTCTCATATACATATTATTTTTATTCATTTCTGATGGTATCCTTAATGCGTTGTCTCATTTACTAACACTTAATGCCAACTGCATACCCCATCAATGAAGAGATCTTTGGAGATCGGTAAGGTTAAAAGACCTGTTTCTTTTTTTTTTTTTTGGGATTGCTTAAGAGTGATACTTATGTTTATGCAGTCAATTCTTGTACTTCCATTTTTTCTTGTGATATAAATAATATACAATATCATCCCCATATATGTCATCCTTATCCAATTATAAAATAGAAGTCCTGAAACCAAAAAAATTGGAATATTTTTGAGGTAAAACGGGGTGAATCACTTCTGAATTTCCTCGCCGAAGCAACTTTAATAGTTCTAGGTACAGAAAATGATAGCATAAATTACAAGATTTTTTTAAGGAAAAACATTCATCTATCTGATTTATATCAGCGATGTTCCCTTATAGATGAGAAGTTTTTAGTCTATTGTTGTTTTTTTACTCCCTGTTATTTCGTTTCCTCTGATGTTATTCTGCTTCATTTGATGCCATGCTAAATTTAAGCTCCTATGGTTCAGGAAAATAGGCTGAAAGCTTCAGAAATGAAGAGTAGATGCTTGGTGGCTTTGGACAGCACAAACATCAGCAAGAATCGTTATACTGATGTCATCCCATGTATGCTAATCAGTTGTCTGTTTGTTTTCTTTGATTTTATATTGCATTATTTTTTCGAAATAATTGGATCAAGCTTCATTGCTCTCAGTTGACAATAACAGGGTTGTTTTGGACCCATGTAAAGACTACAGACCGTCAGCTAAGGGATATATCAATGCAAGCTTTATAGAGGTGGATTCCTACATCCTTCACTTGGAATTATTTAAAAAGCCACTTCCCCTACTTGCTTAGCAAACAATATTGAGTTACAACGCAAAATCTGCTTCTGACCTTTTATACTGCTCTTTTTGATTGAAGATATCTGAAGGGGTGTCTCGGTTTGTTGCAACACAAGGTCCACTAGCACACACCTTTGAAGACTTCTGGGAAATGATAATCCAGCAACGCTGTCCTGTCATTGTGATGCTTACACGATTGGTTGACAATTACAAGGTATTCAATTGTTTAGACTAAGGTATACTTGCTTTGCAACCAAAATAAGTAAACATTTTATGACTATAGTCTGATCTATAATTTTCTTTATGGAAGAGAGAACCGACACTTTTACCTTTTTCAGTTTCTTCATTTGTAACCCCCTCCCACACACACACAGAAGTAGACCTGGCATTTTTATGCATTGAAGAAGTTGCAAATGAATCTTTGTTGGGTCTTGAACTTTTATCTTAAGATACAAAACCGAAGCCAGGAAGCCTGGCATGGAAAGGCTCAAGAAAAAAGTATCTTACAAATATACCTTTCATGCGTTCGCGCATAGAGCTTTGGTATAGCACTAAGGGCGCTACACGCTATGTTTGGGTTAGCGCTCGTCATGTGTTTGAACTTTGTTGCGGACAAAAGGTTGGAATTTAAGTGAGGAATAATAGAGGTTTGACCATTACTCAAGGAGTTTCGAACTATTTGCTCATGGACGTGGAAAATTTTCTGGTTATTATAAAAAGATGTTCCTTTTGTTCCTCCATCTTTGCTCCTAAACCTGCGATACTGAAAGGCTAATGTTGGTATTGCTAATTAGCATCCTCATTACTTCATGTGTTCTTTCCTCATTTCTTTTTTGGCTCCAGCGTCAAGCAGGGTGTCATGGGTTTAAGGTTTGTACTTTGCTAAATACTTGTGACTTGAACATATCTTGCTACTCTATACCTATTCTTCTTTCTTCAAATATGCATGAGCTTGAACTTAGATTGAATATTCTACGTGGATATTGAGTAATCTTATGGACATTGCGCATTGTCAAGTTTGTGATCTAGAGATGAAAATATAGATTGGAGGGAGCAATTGTTGCCAGAGGAACTAGCATATGCGGGTGTAGGATCAAATTAGTATTCAATCACAACAACAATAATAACGCCTCAGTCCCAAATAAATTAGGGATCGGCTATATGAATCACTGGCCATGTTTCCATTCTCATCTCAGGACAATATTATACAAATTAGAAATAGTAAAGTAAAATGTACTAAAAGTTCTATATATATTTTTCGTTTAGACTCATCTTGGACCAGTATTATGCAAAATAAAAATAGAAGTAAAATCTACTAGACGTTCTCTATATTTCAAATTATATATAGAATCAGAATTCAAGAAAAATGGTTAGAATTAGAGATTTATCTCTTTCAGCAAAGGAGTTCTATTCATTTTGTTGGGACATCATCTTTTTTGCATCTGTGTTTTGTCTTCTATTTTTCATATTAGATTTCAGGAGCCCCTCTTAGAAGCACACCGAAGCCTGAACAACTTTGTCTTATTCAAATAGAATAGTGTTGTCTCAGGATATTGTGGGCTAGGGCTTCTGAGTTGACGCTGGGTCATATGATCTTTGGAGGAATTAGAGTAGTCTGATGTAGAAAACCCTTTTTACCTTTCTGATATGGTTTGTGCCTCACATCTTGTCTCAATTGCATTTCCAATCTTTACCAGATAAATGGAAGCAATTAAAAGGTAGGAAGATGTGTTCTCGCTGCATGGTCGTTATCCTGAGTCTGTAATTTTTTGACCAGTATCGGAATTGCTATTCCCTACTTTAGTCAGTTTTCAGACTTGTTAACTCTCGAGTCTATTTTAGCATTTTGTTCTAGTGAGTTCCCACTTGAAATATAAGTGATTCCTGTTGACCTATATTCAGTATTAGCAGTTTTATATTTACCTTCTCGTTTGATGAAATCAAATGCAGATGGTGAAGTGTGGGGACTACTTTCAGGCAGAGGATGGGCCTAGAACATTTGGCAATATATG</genome_strand>
        <mrna_strand>GAAAAAAAAAAGAACAAAAAAAGTCGAAACCACGGGCAGCGCCGTATCAGTTCGGAGTCGGAGCCGGAGATCGGCCATGGCTGCCGCCGGTAATCCGTTATCCTCCGCTGTCACTTTCACAGAGCCGCCACCTGTTGCTCCTGGTACTGCTAATAAATCTTTGGATTTCTCTGCTGATTCAGTTCTACAGAGAATCGTACTGTCGCCTGATCAGCGTAGTCACTGTTTGGAAGCACTTAAAGCATTTAAGCAGAAAAGGTGTCACTCTCCGGACAAAATTGCCTCAGAGTTCTCCACTTTGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATAGGCTGAAAGCTTCAGAAATGAAGAGTAGATGCTTGGTGGCTTTGGACAGCACAAACATCAGCAAGAATCGTTATACTGATGTCATCCCAT........................................................................................TTGACAATAACAGGGTTGTTTTGGACCCATGTAAAGACTACAGACCGTCAGCTAAGGGATATATCAATGCAAGCTTTATAGAG..............................................................................................................................ATATCTGAAGGGGTGTCTCGGTTTGTTGCAACACAAGGTCCACTAGCACACACCTTTGAAGACTTCTGGGAAATGATAATCCAGCAACGCTGTCCTGTCATTGTGATGCTTACACGATTGGTTGACAATTACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGAAGTGTGGGGACTACTTTCAGGCAGAGGATGGGCCTAGAACATTTGGCAATATATG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E264403" ref_strand="+" ref_description="SGN-E264403 [cLEG-67-M24]">
      <seq>tgaaccaaaaaggaaaaaaaaaagaacaaaaaaagtcgaaaccacgggcagcgccgtatcagttcggagtcggagccggagatcggccatggctgccgccggtaatccgttatcctccgctgtcactttcacagagccgccacctgttgctcctggtactgctaataaatctttggatttctctgctgattcagttctacagagaatcgtactgtcgcctgatcagcgtagtcactgtttggaagcacttaaagcatttaagcagaaaaggtgtcactctccggacaaaattgcctcagagttctccactttgcaggaaaataggctgaaagcttcagaaatgaagagtagatgcttggtggctttggacagcacaaacatcagcaagaatcgttatactgatgtcatcccatttgacaataacagggttgttttggacccatgtaaagactacagaccgtcagctaagggatatatcaatgcaagctttatagagatatctgaaggggtgtctcggtttgttgcaacacaaggtccactagcacacacctttgaagacttctgggaaatgataatccagcaacgctgtcctgtcattgtgatgcttacacgattggttgacaat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0080C09.1" temp_strand="-" temp_description="C00HBa0080C09.1  CU928194.8 htgs_phase:3 submitted_to_sgn_as:C00HBa0080C09 sequenced_by:sanger upload_account_name:uk">
        <position start="83932" stop="79653"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83632" g_stop="83317" g_length="316"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="316" r_length="316" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83316" i_stop="80476" i_length="2841">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80475" g_stop="80379" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="317" r_stop="413" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80378" i_stop="80291" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80290" g_stop="80208" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="414" r_stop="496" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80207" i_stop="80082" i_length="126">
            <donor d_prob="0.846" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80081" g_stop="79953" g_length="129"/>
          <reference_exon_boundary r_type="cDNA" r_start="497" r_stop="625" r_length="129" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0080C09.1" gen_strand="-" ref_id="SGN-E264403" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>625</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0080C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E264403" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83632" e_stop="83317"/>
          <exon e_start="80475" e_stop="80379"/>
          <exon e_start="80290" e_stop="80208"/>
          <exon e_start="80081" e_stop="79953"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>TGAACCAAAAAGGAAAAAAAAAAGAACAAAAAAAGTCGAAACCACGGGCAGCGCCGTATCAGTTCGGAGTCGGAGCCGGAGATCGGCCATGGCTGCCGCCGGTAATCCGTTATCCTCCGCTGTCACTTTCACAGAGCCGCCACCTGTTGCTCCTGGTACTGCTAATAAATCTTTGGATTTCTCTGCTGATTCAGTTCTACAGAGAATCGTACTGTCGCCTGATCAGCGTAGTCACTGTTTGGAAGCACTTAAAGCATTTAAGCAGAAAAGGTGTCACTCTCCGGACAAAATTGCCTCAGAGTTCTCCACTTTGCAGGTTTCCTTTTTCTTTTTTCCTGTTATTTTGTGGCTTTCGGCTATTCATTTGAAAACCTGTGTGGCAATATTTTGATGCTTAGTTTGAAGTTTACCGTAATGTTCTTGCAAAAAGGATACTAAGATATAGTATTATACTTGTACATTCAGCTGATATTAGCAGCATCTTAGTTTACTTGTATTAGTTACAGTTAGCTGTTAGCTTAACCAACAATTAGTTAGAGATATTTTTAGCCAGCTAGAGACACGGATATAAACACAACGTACAAAAATTGGAGCTCAGATTGAGCCCTAATTGTCCCTTGCTTTACATTTTAGAGCCTGTTTGGCTCAGCTTAAAAGCTGGTCAAACTACTTGCTGGTTTTTGACTTATTTAGCTGTTTGGCAATACTCAAAACAGCTTATTTTAAGTTAAAAAAAACTTATTTTAAGCCAAAAGTTAAAAGCTGGGGTAGGGGTGCTTTTTTATTTTTAGCTTATAAGCTGTTTTAAGTTGACCACATTTTTATCTTTTTGTGCTTAATATTTTTATACAATCTCCAAATTACCCATATAACCCTAACATTTCTTTCTTTCATTTATCCTTTTCACGTTTGACATAACAACTGCTTATTTTAAAAATAAGTTTCAGCACTTTTAAAAGTACTTTTTTAAAGCTGCTTTTATTAAGCCCATCCAAACGGGCCCTTAATATGGTGTCAGAGCTCTAGAGTATTTCCTTGAGCTGTTCTTCAATTGGCACACCTGGTGTTAATTTCTGTAGAAATAGAAGAAATTGAACTCTTGTATCTTCCAAATCAGCTGTTTTTGTCTTCAACTTTATCAATCATGTTATTCCTCATGGCTATGATCAGAATGAGCAATCCACTTTTAATCCAATTAGTCTCTTTACGTGCATTTTTCTGACTGTAGTAACCTTCCTTTTGATGGGATACGGTACAAATACTTTAGAAGAGGTTACTAGGATCTTTTTCCGTCAAGAATAAATTAGATCTTATCCTTGGAGACTGTGAAAGACCAGGTACGGAACCCCACAACTTGATCAGTTAAAGAGGTTCGATGATATGGTCAATTTGTGGATTTTGAATGCTCTTGCTAAAGAAGTTGCTGATAGTGTGGAATATGTCAAGGAGTCAGTTGAATTATGGAAGGAATCAGAAGATCACGATCAAACAAATGGTGCTAAGTTGTACCTAATTGAGAACGAGTTAATGACAGGACTCAAGGGTGCTTGATTACTAGCTATTACACAAAAATGAAGAAACTCTGGGAGGAATTGAACACCTTGAGTGCTAAAACACAAGATAGTTTTCAGTACACTTGTGATTCAAGGAAAATATGCATAAGGCAGAACAAGATAAGAGACTAACACAATTTCTCATGGGCTTCAATAGGTGTATATATTGAGAGGAAGCATACTTGTGATAAATTCACTGCTTCCGTAACACATGCTTTTTCCCTGCTGATTCAGGAGGAAAAACAAAAAGAGCTTCGGTCTAATAATAAGTTGGATGTACTAAGGAGTAAGGACAAGTGCTATAAACTGCATGGATATTCTCAAAATTCCAATCAAAGCCTAAAGGATTTCAATCAGAATTCTAAGATCAACAAGGGAAAAAGAACTGTGGCAAAATGTGCATTGTATACCAGTGGAAATGATATATGTTAAGGTAAAGGAACCTAACCATTAAGATGAGAATCAAAATGTCAGCTTCACTAAGTAGCAATATGGATAAATTGTTTATCTGTTACAACATTTTCAATTTGGCAATGCAGGAGAGAACTCAAACCACTTTATCTCACTACTGAAGTTGTGAACTTATCCGATATTATAGCTTGTTCAATTTCTATTGAATTTAAGAAAGTTCCATGTAAATGTTTCAAAACAAGGGCTGACTCATGAAATTTTAGATTCATGAGCCTCAAACCACATGACGTTCTACTCATTAGAACCCTATTATCAAACATTAGACTCAGTTTCTGTAGAAAAAATAGATGGCTGGCATCTCACCAACAGGGATGGAAAGAACTTCGGGCTTTACCTGGTATGTTACCAGACACATCCTGTTAAGGTTTCCCACTTTGGTAATCTTACCCAATTTTATTTTATTTATATTGTTAAGGTTCTCTCTTTTATGTTTATTTTAAAGAAAATTAGAACTTCACCATATGCTTTATTGGTCACCATTCCAAATGGTTATAAAGTGAAGGTGATAGAAATTGGAAATGTGACAATTGCACCCAACATCACTTTGCACAAAGTGCTGTTTGTGCCTCTCATATACATATTATTTTTATTCATTTCTGATGGTATCCTTAATGCGTTGTCTCATTTACTAACACTTAATGCCAACTGCATACCCCATCAATGAAGAGATCTTTGGAGATCGGTAAGGTTAAAAGACCTGTTTCTTTTTTTTTTTTTTGGGATTGCTTAAGAGTGATACTTATGTTTATGCAGTCAATTCTTGTACTTCCATTTTTTCTTGTGATATAAATAATATACAATATCATCCCCATATATGTCATCCTTATCCAATTATAAAATAGAAGTCCTGAAACCAAAAAAATTGGAATATTTTTGAGGTAAAACGGGGTGAATCACTTCTGAATTTCCTCGCCGAAGCAACTTTAATAGTTCTAGGTACAGAAAATGATAGCATAAATTACAAGATTTTTTTAAGGAAAAACATTCATCTATCTGATTTATATCAGCGATGTTCCCTTATAGATGAGAAGTTTTTAGTCTATTGTTGTTTTTTTACTCCCTGTTATTTCGTTTCCTCTGATGTTATTCTGCTTCATTTGATGCCATGCTAAATTTAAGCTCCTATGGTTCAGGAAAATAGGCTGAAAGCTTCAGAAATGAAGAGTAGATGCTTGGTGGCTTTGGACAGCACAAACATCAGCAAGAATCGTTATACTGATGTCATCCCATGTATGCTAATCAGTTGTCTGTTTGTTTTCTTTGATTTTATATTGCATTATTTTTTCGAAATAATTGGATCAAGCTTCATTGCTCTCAGTTGACAATAACAGGGTTGTTTTGGACCCATGTAAAGACTACAGACCGTCAGCTAAGGGATATATCAATGCAAGCTTTATAGAGGTGGATTCCTACATCCTTCACTTGGAATTATTTAAAAAGCCACTTCCCCTACTTGCTTAGCAAACAATATTGAGTTACAACGCAAAATCTGCTTCTGACCTTTTATACTGCTCTTTTTGATTGAAGATATCTGAAGGGGTGTCTCGGTTTGTTGCAACACAAGGTCCACTAGCACACACCTTTGAAGACTTCTGGGAAATGATAATCCAGCAACGCTGTCCTGTCATTGTGATGCTTACACGATTGGTTGACAAT</genome_strand>
        <mrna_strand>TGAACCAAAAAGGAAAAAAAAAAGAACAAAAAAAGTCGAAACCACGGGCAGCGCCGTATCAGTTCGGAGTCGGAGCCGGAGATCGGCCATGGCTGCCGCCGGTAATCCGTTATCCTCCGCTGTCACTTTCACAGAGCCGCCACCTGTTGCTCCTGGTACTGCTAATAAATCTTTGGATTTCTCTGCTGATTCAGTTCTACAGAGAATCGTACTGTCGCCTGATCAGCGTAGTCACTGTTTGGAAGCACTTAAAGCATTTAAGCAGAAAAGGTGTCACTCTCCGGACAAAATTGCCTCAGAGTTCTCCACTTTGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATAGGCTGAAAGCTTCAGAAATGAAGAGTAGATGCTTGGTGGCTTTGGACAGCACAAACATCAGCAAGAATCGTTATACTGATGTCATCCCAT........................................................................................TTGACAATAACAGGGTTGTTTTGGACCCATGTAAAGACTACAGACCGTCAGCTAAGGGATATATCAATGCAAGCTTTATAGAG..............................................................................................................................ATATCTGAAGGGGTGTCTCGGTTTGTTGCAACACAAGGTCCACTAGCACACACCTTTGAAGACTTCTGGGAAATGATAATCCAGCAACGCTGTCCTGTCATTGTGATGCTTACACGATTGGTTGACAAT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E395233" ref_strand="+" ref_description="SGN-E395233 [TUS-45-G24]">
      <seq>ggaaaaaaaaaagaacaaaaaaagtcgaaaccacgggcagcgccgtatcagttcggagtcggagccggagatcggccatggctgccgccggtaatccgttatcctccgctgtcactttcacagagccgccacctgttgctcctggtactgctaataaatctttggatttctctgctgattcagttctacagagaatcgtactgtcgcctgatcagcgtagtcactgtttggaagcacttaaagcatttaagcagaaaaggtgtcactctccggacaaaattgcctcagagttctccactttgcaggaaaataggctgaaagcttcagaaatgaagagtagatgcttggtggctttggacagcacaaacatcagcaagaatcgttatactgatgtcatcccatttgacaataacagggttgttttggacccatgtaaagactacagaccgtcagctaagggatatatcaatgcaagctttatagagatatctgaaggggtgtctcggtttgttgcaacacaaggtccactagcacacacctttgaagacttctgggaaatgataatccaccaacgct</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0080C09.1" temp_strand="-" temp_description="C00HBa0080C09.1  CU928194.8 htgs_phase:3 submitted_to_sgn_as:C00HBa0080C09 sequenced_by:sanger upload_account_name:uk">
        <position start="83921" stop="79691"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83621" g_stop="83317" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83316" i_stop="80476" i_length="2841">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80475" g_stop="80379" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="402" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80378" i_stop="80291" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80290" g_stop="80208" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="485" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80207" i_stop="80082" i_length="126">
            <donor d_prob="0.846" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80081" g_stop="79991" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="576" r_length="91" r_score="0.989"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0080C09.1" gen_strand="-" ref_id="SGN-E395233" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>576</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0080C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E395233" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83621" e_stop="83317"/>
          <exon e_start="80475" e_stop="80379"/>
          <exon e_start="80290" e_stop="80208"/>
          <exon e_start="80081" e_stop="79991"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAAAAAAAGAACAAAAAAAGTCGAAACCACGGGCAGCGCCGTATCAGTTCGGAGTCGGAGCCGGAGATCGGCCATGGCTGCCGCCGGTAATCCGTTATCCTCCGCTGTCACTTTCACAGAGCCGCCACCTGTTGCTCCTGGTACTGCTAATAAATCTTTGGATTTCTCTGCTGATTCAGTTCTACAGAGAATCGTACTGTCGCCTGATCAGCGTAGTCACTGTTTGGAAGCACTTAAAGCATTTAAGCAGAAAAGGTGTCACTCTCCGGACAAAATTGCCTCAGAGTTCTCCACTTTGCAGGTTTCCTTTTTCTTTTTTCCTGTTATTTTGTGGCTTTCGGCTATTCATTTGAAAACCTGTGTGGCAATATTTTGATGCTTAGTTTGAAGTTTACCGTAATGTTCTTGCAAAAAGGATACTAAGATATAGTATTATACTTGTACATTCAGCTGATATTAGCAGCATCTTAGTTTACTTGTATTAGTTACAGTTAGCTGTTAGCTTAACCAACAATTAGTTAGAGATATTTTTAGCCAGCTAGAGACACGGATATAAACACAACGTACAAAAATTGGAGCTCAGATTGAGCCCTAATTGTCCCTTGCTTTACATTTTAGAGCCTGTTTGGCTCAGCTTAAAAGCTGGTCAAACTACTTGCTGGTTTTTGACTTATTTAGCTGTTTGGCAATACTCAAAACAGCTTATTTTAAGTTAAAAAAAACTTATTTTAAGCCAAAAGTTAAAAGCTGGGGTAGGGGTGCTTTTTTATTTTTAGCTTATAAGCTGTTTTAAGTTGACCACATTTTTATCTTTTTGTGCTTAATATTTTTATACAATCTCCAAATTACCCATATAACCCTAACATTTCTTTCTTTCATTTATCCTTTTCACGTTTGACATAACAACTGCTTATTTTAAAAATAAGTTTCAGCACTTTTAAAAGTACTTTTTTAAAGCTGCTTTTATTAAGCCCATCCAAACGGGCCCTTAATATGGTGTCAGAGCTCTAGAGTATTTCCTTGAGCTGTTCTTCAATTGGCACACCTGGTGTTAATTTCTGTAGAAATAGAAGAAATTGAACTCTTGTATCTTCCAAATCAGCTGTTTTTGTCTTCAACTTTATCAATCATGTTATTCCTCATGGCTATGATCAGAATGAGCAATCCACTTTTAATCCAATTAGTCTCTTTACGTGCATTTTTCTGACTGTAGTAACCTTCCTTTTGATGGGATACGGTACAAATACTTTAGAAGAGGTTACTAGGATCTTTTTCCGTCAAGAATAAATTAGATCTTATCCTTGGAGACTGTGAAAGACCAGGTACGGAACCCCACAACTTGATCAGTTAAAGAGGTTCGATGATATGGTCAATTTGTGGATTTTGAATGCTCTTGCTAAAGAAGTTGCTGATAGTGTGGAATATGTCAAGGAGTCAGTTGAATTATGGAAGGAATCAGAAGATCACGATCAAACAAATGGTGCTAAGTTGTACCTAATTGAGAACGAGTTAATGACAGGACTCAAGGGTGCTTGATTACTAGCTATTACACAAAAATGAAGAAACTCTGGGAGGAATTGAACACCTTGAGTGCTAAAACACAAGATAGTTTTCAGTACACTTGTGATTCAAGGAAAATATGCATAAGGCAGAACAAGATAAGAGACTAACACAATTTCTCATGGGCTTCAATAGGTGTATATATTGAGAGGAAGCATACTTGTGATAAATTCACTGCTTCCGTAACACATGCTTTTTCCCTGCTGATTCAGGAGGAAAAACAAAAAGAGCTTCGGTCTAATAATAAGTTGGATGTACTAAGGAGTAAGGACAAGTGCTATAAACTGCATGGATATTCTCAAAATTCCAATCAAAGCCTAAAGGATTTCAATCAGAATTCTAAGATCAACAAGGGAAAAAGAACTGTGGCAAAATGTGCATTGTATACCAGTGGAAATGATATATGTTAAGGTAAAGGAACCTAACCATTAAGATGAGAATCAAAATGTCAGCTTCACTAAGTAGCAATATGGATAAATTGTTTATCTGTTACAACATTTTCAATTTGGCAATGCAGGAGAGAACTCAAACCACTTTATCTCACTACTGAAGTTGTGAACTTATCCGATATTATAGCTTGTTCAATTTCTATTGAATTTAAGAAAGTTCCATGTAAATGTTTCAAAACAAGGGCTGACTCATGAAATTTTAGATTCATGAGCCTCAAACCACATGACGTTCTACTCATTAGAACCCTATTATCAAACATTAGACTCAGTTTCTGTAGAAAAAATAGATGGCTGGCATCTCACCAACAGGGATGGAAAGAACTTCGGGCTTTACCTGGTATGTTACCAGACACATCCTGTTAAGGTTTCCCACTTTGGTAATCTTACCCAATTTTATTTTATTTATATTGTTAAGGTTCTCTCTTTTATGTTTATTTTAAAGAAAATTAGAACTTCACCATATGCTTTATTGGTCACCATTCCAAATGGTTATAAAGTGAAGGTGATAGAAATTGGAAATGTGACAATTGCACCCAACATCACTTTGCACAAAGTGCTGTTTGTGCCTCTCATATACATATTATTTTTATTCATTTCTGATGGTATCCTTAATGCGTTGTCTCATTTACTAACACTTAATGCCAACTGCATACCCCATCAATGAAGAGATCTTTGGAGATCGGTAAGGTTAAAAGACCTGTTTCTTTTTTTTTTTTTTGGGATTGCTTAAGAGTGATACTTATGTTTATGCAGTCAATTCTTGTACTTCCATTTTTTCTTGTGATATAAATAATATACAATATCATCCCCATATATGTCATCCTTATCCAATTATAAAATAGAAGTCCTGAAACCAAAAAAATTGGAATATTTTTGAGGTAAAACGGGGTGAATCACTTCTGAATTTCCTCGCCGAAGCAACTTTAATAGTTCTAGGTACAGAAAATGATAGCATAAATTACAAGATTTTTTTAAGGAAAAACATTCATCTATCTGATTTATATCAGCGATGTTCCCTTATAGATGAGAAGTTTTTAGTCTATTGTTGTTTTTTTACTCCCTGTTATTTCGTTTCCTCTGATGTTATTCTGCTTCATTTGATGCCATGCTAAATTTAAGCTCCTATGGTTCAGGAAAATAGGCTGAAAGCTTCAGAAATGAAGAGTAGATGCTTGGTGGCTTTGGACAGCACAAACATCAGCAAGAATCGTTATACTGATGTCATCCCATGTATGCTAATCAGTTGTCTGTTTGTTTTCTTTGATTTTATATTGCATTATTTTTTCGAAATAATTGGATCAAGCTTCATTGCTCTCAGTTGACAATAACAGGGTTGTTTTGGACCCATGTAAAGACTACAGACCGTCAGCTAAGGGATATATCAATGCAAGCTTTATAGAGGTGGATTCCTACATCCTTCACTTGGAATTATTTAAAAAGCCACTTCCCCTACTTGCTTAGCAAACAATATTGAGTTACAACGCAAAATCTGCTTCTGACCTTTTATACTGCTCTTTTTGATTGAAGATATCTGAAGGGGTGTCTCGGTTTGTTGCAACACAAGGTCCACTAGCACACACCTTTGAAGACTTCTGGGAAATGATAATCCAGCAACGCT</genome_strand>
        <mrna_strand>GGAAAAAAAAAAGAACAAAAAAAGTCGAAACCACGGGCAGCGCCGTATCAGTTCGGAGTCGGAGCCGGAGATCGGCCATGGCTGCCGCCGGTAATCCGTTATCCTCCGCTGTCACTTTCACAGAGCCGCCACCTGTTGCTCCTGGTACTGCTAATAAATCTTTGGATTTCTCTGCTGATTCAGTTCTACAGAGAATCGTACTGTCGCCTGATCAGCGTAGTCACTGTTTGGAAGCACTTAAAGCATTTAAGCAGAAAAGGTGTCACTCTCCGGACAAAATTGCCTCAGAGTTCTCCACTTTGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATAGGCTGAAAGCTTCAGAAATGAAGAGTAGATGCTTGGTGGCTTTGGACAGCACAAACATCAGCAAGAATCGTTATACTGATGTCATCCCAT........................................................................................TTGACAATAACAGGGTTGTTTTGGACCCATGTAAAGACTACAGACCGTCAGCTAAGGGATATATCAATGCAAGCTTTATAGAG..............................................................................................................................ATATCTGAAGGGGTGTCTCGGTTTGTTGCAACACAAGGTCCACTAGCACACACCTTTGAAGACTTCTGGGAAATGATAATCCACCAACGCT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E295752" ref_strand="+" ref_description="SGN-E295752 [cLET-25-M11]">
      <seq>gaaaaaaaaaagaacaaaaaaagtcgaaaccacgggcagcgccgtatcagttcggagtcggagccggagatcggccatggctgccgccggtaatccgttatcctccgctgtcactttcacagagccgccacctgttgctcctggtactgctaataaatctttggatttctctgctgattcagttctacagagaatcgtactgtcgcctgatcagcgtagtcactgtttggaagcacttaaagcatttaagcagaaaaggtgtcactctccggacaaaattgcctcagagttctccactttgcaagaaaataggctgaaagcttcagaaatgaagagtagatgcttggtggctttggacagcacaaacatcagcaagaatcgttatactgatgtcatcccatttgacaataacagggttgttttggacccatgtaaagactacagaccgtcagctaagggatatatcaatgcaagctttatagagata</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0080C09.1" temp_strand="-" temp_description="C00HBa0080C09.1  CU928194.8 htgs_phase:3 submitted_to_sgn_as:C00HBa0080C09 sequenced_by:sanger upload_account_name:uk">
        <position start="83920" stop="79906"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83620" g_stop="83317" g_length="304"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="304" r_length="304" r_score="0.997"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83316" i_stop="80476" i_length="2841">
            <donor d_prob="0.993" d_score="0.98"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80475" g_stop="80379" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="305" r_stop="401" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80378" i_stop="80291" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80290" g_stop="80208" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="402" r_stop="484" r_length="83" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0080C09.1" gen_strand="-" ref_id="SGN-E295752" ref_strand="+">
        <total_alignment_score>0.998</total_alignment_score>
        <cumulative_length_of_scored_exons>484</cumulative_length_of_scored_exons>
        <coverage percentage="0.994" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0080C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E295752" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83620" e_stop="83317"/>
          <exon e_start="80475" e_stop="80379"/>
          <exon e_start="80290" e_stop="80208"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAAAAAAAGAACAAAAAAAGTCGAAACCACGGGCAGCGCCGTATCAGTTCGGAGTCGGAGCCGGAGATCGGCCATGGCTGCCGCCGGTAATCCGTTATCCTCCGCTGTCACTTTCACAGAGCCGCCACCTGTTGCTCCTGGTACTGCTAATAAATCTTTGGATTTCTCTGCTGATTCAGTTCTACAGAGAATCGTACTGTCGCCTGATCAGCGTAGTCACTGTTTGGAAGCACTTAAAGCATTTAAGCAGAAAAGGTGTCACTCTCCGGACAAAATTGCCTCAGAGTTCTCCACTTTGCAGGTTTCCTTTTTCTTTTTTCCTGTTATTTTGTGGCTTTCGGCTATTCATTTGAAAACCTGTGTGGCAATATTTTGATGCTTAGTTTGAAGTTTACCGTAATGTTCTTGCAAAAAGGATACTAAGATATAGTATTATACTTGTACATTCAGCTGATATTAGCAGCATCTTAGTTTACTTGTATTAGTTACAGTTAGCTGTTAGCTTAACCAACAATTAGTTAGAGATATTTTTAGCCAGCTAGAGACACGGATATAAACACAACGTACAAAAATTGGAGCTCAGATTGAGCCCTAATTGTCCCTTGCTTTACATTTTAGAGCCTGTTTGGCTCAGCTTAAAAGCTGGTCAAACTACTTGCTGGTTTTTGACTTATTTAGCTGTTTGGCAATACTCAAAACAGCTTATTTTAAGTTAAAAAAAACTTATTTTAAGCCAAAAGTTAAAAGCTGGGGTAGGGGTGCTTTTTTATTTTTAGCTTATAAGCTGTTTTAAGTTGACCACATTTTTATCTTTTTGTGCTTAATATTTTTATACAATCTCCAAATTACCCATATAACCCTAACATTTCTTTCTTTCATTTATCCTTTTCACGTTTGACATAACAACTGCTTATTTTAAAAATAAGTTTCAGCACTTTTAAAAGTACTTTTTTAAAGCTGCTTTTATTAAGCCCATCCAAACGGGCCCTTAATATGGTGTCAGAGCTCTAGAGTATTTCCTTGAGCTGTTCTTCAATTGGCACACCTGGTGTTAATTTCTGTAGAAATAGAAGAAATTGAACTCTTGTATCTTCCAAATCAGCTGTTTTTGTCTTCAACTTTATCAATCATGTTATTCCTCATGGCTATGATCAGAATGAGCAATCCACTTTTAATCCAATTAGTCTCTTTACGTGCATTTTTCTGACTGTAGTAACCTTCCTTTTGATGGGATACGGTACAAATACTTTAGAAGAGGTTACTAGGATCTTTTTCCGTCAAGAATAAATTAGATCTTATCCTTGGAGACTGTGAAAGACCAGGTACGGAACCCCACAACTTGATCAGTTAAAGAGGTTCGATGATATGGTCAATTTGTGGATTTTGAATGCTCTTGCTAAAGAAGTTGCTGATAGTGTGGAATATGTCAAGGAGTCAGTTGAATTATGGAAGGAATCAGAAGATCACGATCAAACAAATGGTGCTAAGTTGTACCTAATTGAGAACGAGTTAATGACAGGACTCAAGGGTGCTTGATTACTAGCTATTACACAAAAATGAAGAAACTCTGGGAGGAATTGAACACCTTGAGTGCTAAAACACAAGATAGTTTTCAGTACACTTGTGATTCAAGGAAAATATGCATAAGGCAGAACAAGATAAGAGACTAACACAATTTCTCATGGGCTTCAATAGGTGTATATATTGAGAGGAAGCATACTTGTGATAAATTCACTGCTTCCGTAACACATGCTTTTTCCCTGCTGATTCAGGAGGAAAAACAAAAAGAGCTTCGGTCTAATAATAAGTTGGATGTACTAAGGAGTAAGGACAAGTGCTATAAACTGCATGGATATTCTCAAAATTCCAATCAAAGCCTAAAGGATTTCAATCAGAATTCTAAGATCAACAAGGGAAAAAGAACTGTGGCAAAATGTGCATTGTATACCAGTGGAAATGATATATGTTAAGGTAAAGGAACCTAACCATTAAGATGAGAATCAAAATGTCAGCTTCACTAAGTAGCAATATGGATAAATTGTTTATCTGTTACAACATTTTCAATTTGGCAATGCAGGAGAGAACTCAAACCACTTTATCTCACTACTGAAGTTGTGAACTTATCCGATATTATAGCTTGTTCAATTTCTATTGAATTTAAGAAAGTTCCATGTAAATGTTTCAAAACAAGGGCTGACTCATGAAATTTTAGATTCATGAGCCTCAAACCACATGACGTTCTACTCATTAGAACCCTATTATCAAACATTAGACTCAGTTTCTGTAGAAAAAATAGATGGCTGGCATCTCACCAACAGGGATGGAAAGAACTTCGGGCTTTACCTGGTATGTTACCAGACACATCCTGTTAAGGTTTCCCACTTTGGTAATCTTACCCAATTTTATTTTATTTATATTGTTAAGGTTCTCTCTTTTATGTTTATTTTAAAGAAAATTAGAACTTCACCATATGCTTTATTGGTCACCATTCCAAATGGTTATAAAGTGAAGGTGATAGAAATTGGAAATGTGACAATTGCACCCAACATCACTTTGCACAAAGTGCTGTTTGTGCCTCTCATATACATATTATTTTTATTCATTTCTGATGGTATCCTTAATGCGTTGTCTCATTTACTAACACTTAATGCCAACTGCATACCCCATCAATGAAGAGATCTTTGGAGATCGGTAAGGTTAAAAGACCTGTTTCTTTTTTTTTTTTTTGGGATTGCTTAAGAGTGATACTTATGTTTATGCAGTCAATTCTTGTACTTCCATTTTTTCTTGTGATATAAATAATATACAATATCATCCCCATATATGTCATCCTTATCCAATTATAAAATAGAAGTCCTGAAACCAAAAAAATTGGAATATTTTTGAGGTAAAACGGGGTGAATCACTTCTGAATTTCCTCGCCGAAGCAACTTTAATAGTTCTAGGTACAGAAAATGATAGCATAAATTACAAGATTTTTTTAAGGAAAAACATTCATCTATCTGATTTATATCAGCGATGTTCCCTTATAGATGAGAAGTTTTTAGTCTATTGTTGTTTTTTTACTCCCTGTTATTTCGTTTCCTCTGATGTTATTCTGCTTCATTTGATGCCATGCTAAATTTAAGCTCCTATGGTTCAGGAAAATAGGCTGAAAGCTTCAGAAATGAAGAGTAGATGCTTGGTGGCTTTGGACAGCACAAACATCAGCAAGAATCGTTATACTGATGTCATCCCATGTATGCTAATCAGTTGTCTGTTTGTTTTCTTTGATTTTATATTGCATTATTTTTTCGAAATAATTGGATCAAGCTTCATTGCTCTCAGTTGACAATAACAGGGTTGTTTTGGACCCATGTAAAGACTACAGACCGTCAGCTAAGGGATATATCAATGCAAGCTTTATAGAG</genome_strand>
        <mrna_strand>GAAAAAAAAAAGAACAAAAAAAGTCGAAACCACGGGCAGCGCCGTATCAGTTCGGAGTCGGAGCCGGAGATCGGCCATGGCTGCCGCCGGTAATCCGTTATCCTCCGCTGTCACTTTCACAGAGCCGCCACCTGTTGCTCCTGGTACTGCTAATAAATCTTTGGATTTCTCTGCTGATTCAGTTCTACAGAGAATCGTACTGTCGCCTGATCAGCGTAGTCACTGTTTGGAAGCACTTAAAGCATTTAAGCAGAAAAGGTGTCACTCTCCGGACAAAATTGCCTCAGAGTTCTCCACTTTGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATAGGCTGAAAGCTTCAGAAATGAAGAGTAGATGCTTGGTGGCTTTGGACAGCACAAACATCAGCAAGAATCGTTATACTGATGTCATCCCAT........................................................................................TTGACAATAACAGGGTTGTTTTGGACCCATGTAAAGACTACAGACCGTCAGCTAAGGGATATATCAATGCAAGCTTTATAGAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_E_tomato" ref_id="SGN-E334463" ref_strand="+" ref_description="SGN-E334463 [cTOD-23-A16]">
      <seq>agaacaaaaaaaggcgaaaccacgggcagcgccgtatcagttcggagtcggagccggagatcggccatggctgccgccggtaatccgttatcctccgctgtcactttcacagagccgccacctgttgctcctggtactgctaataaatctttggatttctctgctgattcagttctacacagaatcgtactggcgcctgatcagcgtagtcactgtttggaagcacttagagcatttaagcagaaaatgtgtgactctccggacaaagttgcctcagaggtctccactt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/GenomeThreader_SGN_E_tomato/un_xed_seqs" temp_id="C00HBa0080C09.1" temp_strand="-" temp_description="C00HBa0080C09.1  CU928194.8 htgs_phase:3 submitted_to_sgn_as:C00HBa0080C09 sequenced_by:sanger upload_account_name:uk">
        <position start="83910" stop="83022"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83610" g_stop="83322" g_length="289"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="289" r_length="289" r_score="0.972"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0080C09.1" gen_strand="-" ref_id="SGN-E334463" ref_strand="+">
        <total_alignment_score>0.972</total_alignment_score>
        <cumulative_length_of_scored_exons>289</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0080C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-E334463" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83610" e_stop="83322"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGAACAAAAAAAGTCGAAACCACGGGCAGCGCCGTATCAGTTCGGAGTCGGAGCCGGAGATCGGCCATGGCTGCCGCCGGTAATCCGTTATCCTCCGCTGTCACTTTCACAGAGCCGCCACCTGTTGCTCCTGGTACTGCTAATAAATCTTTGGATTTCTCTGCTGATTCAGTTCTACAGAGAATCGTACTGTCGCCTGATCAGCGTAGTCACTGTTTGGAAGCACTTAAAGCATTTAAGCAGAAAAGGTGTCACTCTCCGGACAAAATTGCCTCAGAGTTCTCCACTT</genome_strand>
        <mrna_strand>AGAACAAAAAAAGGCGAAACCACGGGCAGCGCCGTATCAGTTCGGAGTCGGAGCCGGAGATCGGCCATGGCTGCCGCCGGTAATCCGTTATCCTCCGCTGTCACTTTCACAGAGCCGCCACCTGTTGCTCCTGGTACTGCTAATAAATCTTTGGATTTCTCTGCTGATTCAGTTCTACACAGAATCGTACTGGCGCCTGATCAGCGTAGTCACTGTTTGGAAGCACTTAGAGCATTTAAGCAGAAAATGTGTGACTCTCCGGACAAAGTTGCCTCAGAGGTCTCCACTT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>25</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="28186" PGL_stop="25339"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="28186" e_stop="27957"/>
            <exon e_start="27865" e_stop="27773"/>
            <exon e_start="27676" e_stop="27586"/>
            <exon e_start="25566" e_stop="25339"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.956" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.799" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.839" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="28186" e_stop="27957" e_length="230"/>
          </exon>
          <intron i_serial="1" don_prob="0.956" acc_prob="0.989">
            <gDNA_intron_boundary i_start="27956" i_stop="27866" i_length="91"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="27865" e_stop="27773" e_length="93"/>
          </exon>
          <intron i_serial="2" don_prob="0.799" acc_prob="0.995">
            <gDNA_intron_boundary i_start="27772" i_stop="27677" i_length="96"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="27676" e_stop="27586" e_length="91"/>
          </exon>
          <intron i_serial="3" don_prob="0.999" acc_prob="0.839">
            <gDNA_intron_boundary i_start="27585" i_stop="25567" i_length="2019"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="25566" e_stop="25339" e_length="228"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28186" stop="27957"/>
              <exon start="27865" stop="27773"/>
              <exon start="27676" stop="27586"/>
              <exon start="25566" stop="25339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E208112" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TTAAACTTAAGTAGCGGTTTTGTGTCAAACATGGCAACCAAGGGAAATAAAATTTCAATTTTGGCATTTGAAGTTGCAAATACCATTGTCAAGGCTGCCAATCTTATTCATTCTCTTTCAGAAGAAAATGTGAAACATTTGAAGGAGGTGGTGCTTCTTTCAGAAGGTGTGCAGCTCCTGATAACAAAGGATATGGATGAACTCTTGAGAATTGCTGCAGCAGACAAGAG : GGATGAACTGAAAATATTCTCCGGTGAAGTGGTTCGTTTTGGAAATCGCTGTAAAGATCCTCAATGGCACAACTTGGAACGTTACTTTGAAAA : GCTGGAATCTGAACTGACACCTCATGAGCACTTGAAAGAAGAAGCAGAGGCTCTAATGGTGCAGTTGATGATCTCGGTTCAGTATACAGCT : GAACTGTACCATGAATTCCATGCTTTGGACAGATTTGAGCAAGATTATCGACGTAAAGTTCAAGAAGAGGATACTTCAAGTGCTACTCAGAGAGGTATTCCATAACGACAGTTATGTTTTGTTATTTGTGATTCTTTTAAGCAGATTGAAGCTCAAATTTCCCGTAGATGAAATTTGAACTTAAGTTGCTCCAATGTGTTCATCATATTATATTGTTTATGAACATGA</gDNA_template>
            <first_frame> L  N  L  S  S  G  F  V  S  N  M  A  T  K  G  N  K  I  S  I  L  A  F  E  V  A  N  T  I  V  K  A  A  N  L  I  H  S  L  S  E  E  N  V  K  H  L  K  E  V  V  L  L  S  E  G  V  Q  L  L  I  T  K  D  M  D  E  L  L  R  I  A  A  A  D  K  R :   D  E  L  K  I  F  S  G  E  V  V  R  F  G  N  R  C  K  D  P  Q  W  H  N  L  E  R  Y  F  E  K :   L  E  S  E  L  T  P  H  E  H  L  K  E  E  A  E  A  L  M  V  Q  L  M  I  S  V  Q  Y  T  A  :  E  L  Y  H  E  F  H  A  L  D  R  F  E  Q  D  Y  R  R  K  V  Q  E  E  D  T  S  S  A  T  Q  R  G  I  P  *  R  Q  L  C  F  V  I  C  D  S  F  K  Q  I  E  A  Q  I  S  R  R  *  N  L  N  L  S  C  S  N  V  F  I  I  L  Y  C  L  *  T  * </first_frame>
            <second_frame>  *  T  *  V  A  V  L  C  Q  T  W  Q  P  R  E  I  K  F  Q  F  W  H  L  K  L  Q  I  P  L  S  R  L  P  I  L  F  I  L  F  Q  K  K  M  *  N  I  *  R  R  W  C  F  F  Q  K  V  C  S  S  *  *  Q  R  I  W  M  N  S  *  E  L  L  Q  Q  T  R   : G  M  N  *  K  Y  S  P  V  K  W  F  V  L  E  I  A  V  K  I  L  N  G  T  T  W  N  V  T  L  K   : S  W  N  L  N  *  H  L  M  S  T  *  K  K  K  Q  R  L  *  W  C  S  *  *  S  R  F  S  I  Q  L :   N  C  T  M  N  S  M  L  W  T  D  L  S  K  I  I  D  V  K  F  K  K  R  I  L  Q  V  L  L  R  E  V  F  H  N  D  S  Y  V  L  L  F  V  I  L  L  S  R  L  K  L  K  F  P  V  D  E  I  *  T  *  V  A  P  M  C  S  S  Y  Y  I  V  Y  E  H   </second_frame>
            <third_frame>   K  L  K  *  R  F  C  V  K  H  G  N  Q  G  K  *  N  F  N  F  G  I  *  S  C  K  Y  H  C  Q  G  C  Q  S  Y  S  F  S  F  R  R  K  C  E  T  F  E  G  G  G  A  S  F  R  R  C  A  A  P  D  N  K  G  Y  G  *  T  L  E  N  C  C  S  R  Q  E  :  G  *  T  E  N  I  L  R  *  S  G  S  F  W  K  S  L  *  R  S  S  M  A  Q  L  G  T  L  L  *  K  :  A  G  I  *  T  D  T  S  *  A  L  E  R  R  S  R  G  S  N  G  A  V  D  D  L  G  S  V  Y  S   : *  T  V  P  *  I  P  C  F  G  Q  I  *  A  R  L  S  T  *  S  S  R  R  G  Y  F  K  C  Y  S  E  R  Y  S  I  T  T  V  M  F  C  Y  L  *  F  F  *  A  D  *  S  S  N  F  P  *  M  K  F  E  L  K  L  L  Q  C  V  H  H  I  I  L  F  M  N  M  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0080C09.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="28186" stop="27957"/>
                    <exon start="27865" stop="27773"/>
                    <exon start="27676" stop="27586"/>
                    <exon start="25566" stop="25462"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>516</number_coding_nucleotides>
                  <number_encoded_amino_acids>172</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>LNLSSGFVSNMATKGNKISILAFEVANTIVKAANLIHSLSEENVKHLKEVVLLSEGVQLLITKDMDELLRIAAADKRDELKIFSGEVVRFGNRCKDPQWHNLERYFEKLESELTPHEHLKEEAEALMVQLMISVQYTAELYHEFHALDRFEQDYRRKVQEEDTSSATQRGIP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="83632" PGL_stop="72045"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83632" e_stop="83317"/>
            <exon e_start="80475" e_stop="80379"/>
            <exon e_start="80290" e_stop="80208"/>
            <exon e_start="80081" e_stop="79947"/>
            <exon e_start="78210" e_stop="78079"/>
            <exon e_start="74340" e_stop="74192"/>
            <exon e_start="74102" e_stop="73961"/>
            <exon e_start="72690" e_stop="72605"/>
            <exon e_start="72456" e_stop="72045"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.846" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.842" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.792" acc_prob="0.648" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83632" e_stop="83317" e_length="316"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.944">
            <gDNA_intron_boundary i_start="83316" i_stop="80476" i_length="2841"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80475" e_stop="80379" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.936">
            <gDNA_intron_boundary i_start="80378" i_stop="80291" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80290" e_stop="80208" e_length="83"/>
          </exon>
          <intron i_serial="3" don_prob="0.846" acc_prob="0.995">
            <gDNA_intron_boundary i_start="80207" i_stop="80082" i_length="126"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80081" e_stop="79947" e_length="135"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79946" i_stop="78211" i_length="1736"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="78210" e_stop="78079" e_length="132"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.000">
            <gDNA_intron_boundary i_start="78078" i_stop="74341" i_length="3738"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="74340" e_stop="74192" e_length="149"/>
          </exon>
          <intron i_serial="6" don_prob="0.842" acc_prob="0.996">
            <gDNA_intron_boundary i_start="74191" i_stop="74103" i_length="89"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="74102" e_stop="73961" e_length="142"/>
          </exon>
          <intron i_serial="7" don_prob="0.992" acc_prob="0.917">
            <gDNA_intron_boundary i_start="73960" i_stop="72691" i_length="1270"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="72690" e_stop="72605" e_length="86"/>
          </exon>
          <intron i_serial="8" don_prob="0.792" acc_prob="0.648">
            <gDNA_intron_boundary i_start="72604" i_stop="72457" i_length="148"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="72456" e_stop="72045" e_length="412"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83632" stop="83317"/>
              <exon start="80475" stop="80379"/>
              <exon start="80290" stop="80208"/>
              <exon start="80081" stop="79953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83621" stop="83317"/>
              <exon start="80475" stop="80379"/>
              <exon start="80290" stop="80208"/>
              <exon start="80081" stop="79991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83620" stop="83317"/>
              <exon start="80475" stop="80379"/>
              <exon start="80290" stop="80208"/>
              <exon start="80081" stop="79947"/>
              <exon start="78210" stop="78149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83620" stop="83317"/>
              <exon start="80475" stop="80379"/>
              <exon start="80290" stop="80208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83611" stop="83317"/>
              <exon start="80475" stop="80379"/>
              <exon start="80290" stop="80208"/>
              <exon start="80081" stop="79947"/>
              <exon start="78210" stop="78079"/>
              <exon start="74340" stop="74302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83610" stop="83322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83569" stop="83317"/>
              <exon start="80475" stop="80379"/>
              <exon start="80290" stop="80208"/>
              <exon start="80081" stop="79947"/>
              <exon start="78210" stop="78129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83379" stop="83317"/>
              <exon start="80475" stop="80379"/>
              <exon start="80290" stop="80208"/>
              <exon start="80081" stop="79947"/>
              <exon start="78210" stop="78079"/>
              <exon start="74340" stop="74192"/>
              <exon start="74102" stop="74019"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E262568" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83379" stop="83317"/>
              <exon start="80475" stop="80379"/>
              <exon start="80290" stop="80208"/>
              <exon start="80081" stop="79947"/>
              <exon start="78210" stop="78079"/>
              <exon start="74340" stop="74303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83379" stop="83317"/>
              <exon start="80475" stop="80379"/>
              <exon start="80290" stop="80208"/>
              <exon start="80081" stop="79947"/>
              <exon start="78210" stop="78120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80059" stop="79947"/>
              <exon start="78210" stop="78079"/>
              <exon start="74340" stop="74192"/>
              <exon start="74102" stop="73987"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E232826" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80059" stop="79947"/>
              <exon start="78210" stop="78079"/>
              <exon start="74340" stop="74295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80047" stop="79947"/>
              <exon start="78210" stop="78079"/>
              <exon start="74340" stop="74263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80042" stop="79947"/>
              <exon start="78210" stop="78079"/>
              <exon start="74340" stop="74192"/>
              <exon start="74102" stop="73961"/>
              <exon start="72690" stop="72605"/>
              <exon start="72456" stop="72359"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E369150" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80042" stop="79947"/>
              <exon start="78210" stop="78079"/>
              <exon start="74340" stop="74192"/>
              <exon start="74102" stop="74076"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E241030" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80030" stop="79947"/>
              <exon start="78210" stop="78079"/>
              <exon start="74340" stop="74192"/>
              <exon start="74102" stop="74030"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E237775" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74082" stop="73961"/>
              <exon start="72690" stop="72605"/>
              <exon start="72456" stop="72045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74020" stop="73961"/>
              <exon start="72690" stop="72605"/>
              <exon start="72456" stop="72068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257885" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73999" stop="73961"/>
              <exon start="72690" stop="72605"/>
              <exon start="72456" stop="72108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252184" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73981" stop="73961"/>
              <exon start="72690" stop="72605"/>
              <exon start="72456" stop="72068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260187" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72456" stop="72068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257813" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72384" stop="72068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263465" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAACCAAAAAGGAAAAAAAAAAGAACAAAAAAAGTCGAAACCACGGGCAGCGCCGTATCAGTTCGGAGTCGGAGCCGGAGATCGGCCATGGCTGCCGCCGGTAATCCGTTATCCTCCGCTGTCACTTTCACAGAGCCGCCACCTGTTGCTCCTGGTACTGCTAATAAATCTTTGGATTTCTCTGCTGATTCAGTTCTACAGAGAATCGTACTGTCGCCTGATCAGCGTAGTCACTGTTTGGAAGCACTTAAAGCATTTAAGCAGAAAAGGTGTCACTCTCCGGACAAAATTGCCTCAGAGTTCTCCACTTTGCAG : GAAAATAGGCTGAAAGCTTCAGAAATGAAGAGTAGATGCTTGGTGGCTTTGGACAGCACAAACATCAGCAAGAATCGTTATACTGATGTCATCCCAT : TTGACAATAACAGGGTTGTTTTGGACCCATGTAAAGACTACAGACCGTCAGCTAAGGGATATATCAATGCAAGCTTTATAGAG : ATATCTGAAGGGGTGTCTCGGTTTGTTGCAACACAAGGTCCACTAGCACACACCTTTGAAGACTTCTGGGAAATGATAATCCAGCAACGCTGTCCTGTCATTGTGATGCTTACACGATTGGTTGACAATTACAAG : ATGGTGAAGTGTGGGGACTACTTTCAGGCAGAGGATGGGCCTAGAACATTTGGCAATATATGTATTGTGACAAAATATATGACGAGTGATGCCTCCTTAGTGTTGCGAACTCTGGAGGTGAACTATATTGAG : TCAGAAGAACCACCTTTGTGTGTTTTACACATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCCAGAGACACACTTGCTGTTCGTGAGATTCTGAAACGAACGTACAATTTGCCTCTTGGTCTTGGACCAATTGTAGTACACTGCAG : TGCTGGTATCGGTAGGACTGGAACATATTGCACAATCCATAATACCATCCAGAGAATACTGGGTGGAGATATGTCTGCTCTTGACATCGTTAATACAGTAGCCATTTTTAGGTCTCAGCGAATTGGGATGGTCCAGACCATG : GATCAATACCTTTTCTGCTATGATGCCATTATTGATGAACTGGAAGACCTAATTTCAGATGACAATGGAGAGAAGAATCTGTAGTG : TAGCGATGAGTTAACAAGATCTTGGATTCTTGCTCACAATGGGATATGAAACAGTAGTTATGCTGAAGACACAAATCAGTTGGCTCTACTACAGTTGCTTCGTCTCGCTCTCTTTGCTTGGGATCCCAAGTTGTTCAAGAGATACCTGTTGCTATTTCCATCGACCTGAGAACTCATTTGGATCCACTATTTGAAATGCAAAGTGGAATGCCGATGTAAGATGTATCCTTTGGCTGACTGAATATAAATGAAGTTACAATGTTTGCAGATCCAGAAAATTATATTTCTGGTCATTATGGTTTTGCCGAGTAAACACGCTCATTCAACACTAAACTAAGTGAAACTGCTCACTTAATGATTATTTAGCATTGATGTGGATTTGAAATGGTGTATGCTGAAATATTTAAGTTGA</gDNA_template>
            <first_frame> *  T  K  K  E  K  K  K  N  K  K  S  R  N  H  G  Q  R  R  I  S  S  E  S  E  P  E  I  G  H  G  C  R  R  *  S  V  I  L  R  C  H  F  H  R  A  A  T  C  C  S  W  Y  C  *  *  I  F  G  F  L  C  *  F  S  S  T  E  N  R  T  V  A  *  S  A  *  S  L  F  G  S  T  *  S  I  *  A  E  K  V  S  L  S  G  Q  N  C  L  R  V  L  H  F  A   : G  K  *  A  E  S  F  R  N  E  E  *  M  L  G  G  F  G  Q  H  K  H  Q  Q  E  S  L  Y  *  C  H  P  I :   *  Q  *  Q  G  C  F  G  P  M  *  R  L  Q  T  V  S  *  G  I  Y  Q  C  K  L  Y  R   : D  I  *  R  G  V  S  V  C  C  N  T  R  S  T  S  T  H  L  *  R  L  L  G  N  D  N  P  A  T  L  S  C  H  C  D  A  Y  T  I  G  *  Q  L  Q   : D  G  E  V  W  G  L  L  S  G  R  G  W  A  *  N  I  W  Q  Y  M  Y  C  D  K  I  Y  D  E  *  C  L  L  S  V  A  N  S  G  G  E  L  Y  *   : V  R  R  T  T  F  V  C  F  T  H  S  V  S  *  M  A  *  P  W  S  S  Q  R  H  T  C  C  S  *  D  S  E  T  N  V  Q  F  A  S  W  S  W  T  N  C  S  T  L  Q  :  C  W  Y  R  *  D  W  N  I  L  H  N  P  *  Y  H  P  E  N  T  G  W  R  Y  V  C  S  *  H  R  *  Y  S  S  H  F  *  V  S  A  N  W  D  G  P  D  H   : G  S  I  P  F  L  L  *  C  H  Y  *  *  T  G  R  P  N  F  R  *  Q  W  R  E  E  S  V  V  :  *  R  *  V  N  K  I  L  D  S  C  S  Q  W  D  M  K  Q  *  L  C  *  R  H  K  S  V  G  S  T  T  V  A  S  S  R  S  L  C  L  G  S  Q  V  V  Q  E  I  P  V  A  I  S  I  D  L  R  T  H  L  D  P  L  F  E  M  Q  S  G  M  P  M  *  D  V  S  F  G  *  L  N  I  N  E  V  T  M  F  A  D  P  E  N  Y  I  S  G  H  Y  G  F  A  E  *  T  R  S  F  N  T  K  L  S  E  T  A  H  L  M  I  I  *  H  *  C  G  F  E  M  V  Y  A  E  I  F  K  L  </first_frame>
            <second_frame>  E  P  K  R  K  K  K  R  T  K  K  V  E  T  T  G  S  A  V  S  V  R  S  R  S  R  R  S  A  M  A  A  A  G  N  P  L  S  S  A  V  T  F  T  E  P  P  P  V  A  P  G  T  A  N  K  S  L  D  F  S  A  D  S  V  L  Q  R  I  V  L  S  P  D  Q  R  S  H  C  L  E  A  L  K  A  F  K  Q  K  R  C  H  S  P  D  K  I  A  S  E  F  S  T  L  Q  :  E  N  R  L  K  A  S  E  M  K  S  R  C  L  V  A  L  D  S  T  N  I  S  K  N  R  Y  T  D  V  I  P   : F  D  N  N  R  V  V  L  D  P  C  K  D  Y  R  P  S  A  K  G  Y  I  N  A  S  F  I  E  :  I  S  E  G  V  S  R  F  V  A  T  Q  G  P  L  A  H  T  F  E  D  F  W  E  M  I  I  Q  Q  R  C  P  V  I  V  M  L  T  R  L  V  D  N  Y  K  :  M  V  K  C  G  D  Y  F  Q  A  E  D  G  P  R  T  F  G  N  I  C  I  V  T  K  Y  M  T  S  D  A  S  L  V  L  R  T  L  E  V  N  Y  I  E  :  S  E  E  P  P  L  C  V  L  H  I  Q  Y  P  E  W  P  D  H  G  V  P  R  D  T  L  A  V  R  E  I  L  K  R  T  Y  N  L  P  L  G  L  G  P  I  V  V  H  C  S :   A  G  I  G  R  T  G  T  Y  C  T  I  H  N  T  I  Q  R  I  L  G  G  D  M  S  A  L  D  I  V  N  T  V  A  I  F  R  S  Q  R  I  G  M  V  Q  T  M  :  D  Q  Y  L  F  C  Y  D  A  I  I  D  E  L  E  D  L  I  S  D  D  N  G  E  K  N  L  *  C :   S  D  E  L  T  R  S  W  I  L  A  H  N  G  I  *  N  S  S  Y  A  E  D  T  N  Q  L  A  L  L  Q  L  L  R  L  A  L  F  A  W  D  P  K  L  F  K  R  Y  L  L  L  F  P  S  T  *  E  L  I  W  I  H  Y  L  K  C  K  V  E  C  R  C  K  M  Y  P  L  A  D  *  I  *  M  K  L  Q  C  L  Q  I  Q  K  I  I  F  L  V  I  M  V  L  P  S  K  H  A  H  S  T  L  N  *  V  K  L  L  T  *  *  L  F  S  I  D  V  D  L  K  W  C  M  L  K  Y  L  S  * </second_frame>
            <third_frame>   N  Q  K  G  K  K  K  E  Q  K  K  S  K  P  R  A  A  P  Y  Q  F  G  V  G  A  G  D  R  P  W  L  P  P  V  I  R  Y  P  P  L  S  L  S  Q  S  R  H  L  L  L  L  V  L  L  I  N  L  W  I  S  L  L  I  Q  F  Y  R  E  S  Y  C  R  L  I  S  V  V  T  V  W  K  H  L  K  H  L  S  R  K  G  V  T  L  R  T  K  L  P  Q  S  S  P  L  C  R :   K  I  G  *  K  L  Q  K  *  R  V  D  A  W  W  L  W  T  A  Q  T  S  A  R  I  V  I  L  M  S  S  H  :  L  T  I  T  G  L  F  W  T  H  V  K  T  T  D  R  Q  L  R  D  I  S  M  Q  A  L  *  R :   Y  L  K  G  C  L  G  L  L  Q  H  K  V  H  *  H  T  P  L  K  T  S  G  K  *  *  S  S  N  A  V  L  S  L  *  C  L  H  D  W  L  T  I  T  R :   W  *  S  V  G  T  T  F  R  Q  R  M  G  L  E  H  L  A  I  Y  V  L  *  Q  N  I  *  R  V  M  P  P  *  C  C  E  L  W  R  *  T  I  L  S :   Q  K  N  H  L  C  V  F  Y  T  F  S  I  L  N  G  L  T  M  E  F  P  E  T  H  L  L  F  V  R  F  *  N  E  R  T  I  C  L  L  V  L  D  Q  L  *  Y  T  A   : V  L  V  S  V  G  L  E  H  I  A  Q  S  I  I  P  S  R  E  Y  W  V  E  I  C  L  L  L  T  S  L  I  Q  *  P  F  L  G  L  S  E  L  G  W  S  R  P  W :   I  N  T  F  S  A  M  M  P  L  L  M  N  W  K  T  *  F  Q  M  T  M  E  R  R  I  C  S   : V  A  M  S  *  Q  D  L  G  F  L  L  T  M  G  Y  E  T  V  V  M  L  K  T  Q  I  S  W  L  Y  Y  S  C  F  V  S  L  S  L  L  G  I  P  S  C  S  R  D  T  C  C  Y  F  H  R  P  E  N  S  F  G  S  T  I  *  N  A  K  W  N  A  D  V  R  C  I  L  W  L  T  E  Y  K  *  S  Y  N  V  C  R  S  R  K  L  Y  F  W  S  L  W  F  C  R  V  N  T  L  I  Q  H  *  T  K  *  N  C  S  L  N  D  Y  L  A  L  M  W  I  *  N  G  V  C  *  N  I  *  V   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0080C09.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83631" stop="83317"/>
                    <exon start="80475" stop="80379"/>
                    <exon start="80290" stop="80208"/>
                    <exon start="80081" stop="79947"/>
                    <exon start="78210" stop="78079"/>
                    <exon start="74340" stop="74192"/>
                    <exon start="74102" stop="73961"/>
                    <exon start="72690" stop="72607"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>1134</number_coding_nucleotides>
                  <number_encoded_amino_acids>378</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPKRKKKRTKKVETTGSAVSVRSRSRRSAMAAAGNPLSSAVTFTEPPPVAPGTANKSLDFSADSVLQRIVLSPDQRSHCLEALKAFKQKRCHSPDKIASEFSTLQENRLKASEMKSRCLVALDSTNISKNRYTDVIPFDNNRVVLDPCKDYRPSAKGYINASFIEISEGVSRFVATQGPLAHTFEDFWEMIIQQRCPVIVMLTRLVDNYKMVKCGDYFQAEDGPRTFGNICIVTKYMTSDASLVLRTLEVNYIESEEPPLCVLHIQYPEWPDHGVPRDTLAVREILKRTYNLPLGLGPIVVHCSAGIGRTGTYCTIHNTIQRILGGDMSALDIVNTVAIFRSQRIGMVQTMDQYLFCYDAIIDELEDLISDDNGEKNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="83632" e_stop="83317"/>
            <exon e_start="80475" e_stop="80379"/>
            <exon e_start="80290" e_stop="80208"/>
            <exon e_start="80081" e_stop="79947"/>
            <exon e_start="78210" e_stop="78079"/>
            <exon e_start="74340" e_stop="73961"/>
            <exon e_start="72690" e_stop="72605"/>
            <exon e_start="72456" e_stop="72045"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.846" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.792" acc_prob="0.648" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83632" e_stop="83317" e_length="316"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.944">
            <gDNA_intron_boundary i_start="83316" i_stop="80476" i_length="2841"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80475" e_stop="80379" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.936">
            <gDNA_intron_boundary i_start="80378" i_stop="80291" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80290" e_stop="80208" e_length="83"/>
          </exon>
          <intron i_serial="3" don_prob="0.846" acc_prob="0.995">
            <gDNA_intron_boundary i_start="80207" i_stop="80082" i_length="126"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80081" e_stop="79947" e_length="135"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79946" i_stop="78211" i_length="1736"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="78210" e_stop="78079" e_length="132"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.000">
            <gDNA_intron_boundary i_start="78078" i_stop="74341" i_length="3738"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="74340" e_stop="73961" e_length="380"/>
          </exon>
          <intron i_serial="6" don_prob="0.992" acc_prob="0.917">
            <gDNA_intron_boundary i_start="73960" i_stop="72691" i_length="1270"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="72690" e_stop="72605" e_length="86"/>
          </exon>
          <intron i_serial="7" don_prob="0.792" acc_prob="0.648">
            <gDNA_intron_boundary i_start="72604" i_stop="72457" i_length="148"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="72456" e_stop="72045" e_length="412"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83632" stop="83317"/>
              <exon start="80475" stop="80379"/>
              <exon start="80290" stop="80208"/>
              <exon start="80081" stop="79953"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E264403" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83621" stop="83317"/>
              <exon start="80475" stop="80379"/>
              <exon start="80290" stop="80208"/>
              <exon start="80081" stop="79991"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395233" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83620" stop="83317"/>
              <exon start="80475" stop="80379"/>
              <exon start="80290" stop="80208"/>
              <exon start="80081" stop="79947"/>
              <exon start="78210" stop="78149"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374451" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83620" stop="83317"/>
              <exon start="80475" stop="80379"/>
              <exon start="80290" stop="80208"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E295752" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83611" stop="83317"/>
              <exon start="80475" stop="80379"/>
              <exon start="80290" stop="80208"/>
              <exon start="80081" stop="79947"/>
              <exon start="78210" stop="78079"/>
              <exon start="74340" stop="74302"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334471" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83610" stop="83322"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E334463" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83569" stop="83317"/>
              <exon start="80475" stop="80379"/>
              <exon start="80290" stop="80208"/>
              <exon start="80081" stop="79947"/>
              <exon start="78210" stop="78129"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E213472" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83379" stop="83317"/>
              <exon start="80475" stop="80379"/>
              <exon start="80290" stop="80208"/>
              <exon start="80081" stop="79947"/>
              <exon start="78210" stop="78079"/>
              <exon start="74340" stop="74303"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E254597" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83379" stop="83317"/>
              <exon start="80475" stop="80379"/>
              <exon start="80290" stop="80208"/>
              <exon start="80081" stop="79947"/>
              <exon start="78210" stop="78120"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E255055" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80059" stop="79947"/>
              <exon start="78210" stop="78079"/>
              <exon start="74340" stop="74295"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E239616" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="80047" stop="79947"/>
              <exon start="78210" stop="78079"/>
              <exon start="74340" stop="74263"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E238112" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78120" stop="78079"/>
              <exon start="74340" stop="73961"/>
              <exon start="72690" stop="72605"/>
              <exon start="72456" stop="72417"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E233446" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74107" stop="73961"/>
              <exon start="72690" stop="72605"/>
              <exon start="72456" stop="72045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E374450" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74082" stop="73961"/>
              <exon start="72690" stop="72605"/>
              <exon start="72456" stop="72045"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E395232" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="74020" stop="73961"/>
              <exon start="72690" stop="72605"/>
              <exon start="72456" stop="72068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257885" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73999" stop="73961"/>
              <exon start="72690" stop="72605"/>
              <exon start="72456" stop="72108"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E252184" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="73981" stop="73961"/>
              <exon start="72690" stop="72605"/>
              <exon start="72456" stop="72068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E260187" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72456" stop="72068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E257813" strand="-"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="72384" stop="72068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-E263465" strand="-"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>TGAACCAAAAAGGAAAAAAAAAAGAACAAAAAAAGTCGAAACCACGGGCAGCGCCGTATCAGTTCGGAGTCGGAGCCGGAGATCGGCCATGGCTGCCGCCGGTAATCCGTTATCCTCCGCTGTCACTTTCACAGAGCCGCCACCTGTTGCTCCTGGTACTGCTAATAAATCTTTGGATTTCTCTGCTGATTCAGTTCTACAGAGAATCGTACTGTCGCCTGATCAGCGTAGTCACTGTTTGGAAGCACTTAAAGCATTTAAGCAGAAAAGGTGTCACTCTCCGGACAAAATTGCCTCAGAGTTCTCCACTTTGCAG : GAAAATAGGCTGAAAGCTTCAGAAATGAAGAGTAGATGCTTGGTGGCTTTGGACAGCACAAACATCAGCAAGAATCGTTATACTGATGTCATCCCAT : TTGACAATAACAGGGTTGTTTTGGACCCATGTAAAGACTACAGACCGTCAGCTAAGGGATATATCAATGCAAGCTTTATAGAG : ATATCTGAAGGGGTGTCTCGGTTTGTTGCAACACAAGGTCCACTAGCACACACCTTTGAAGACTTCTGGGAAATGATAATCCAGCAACGCTGTCCTGTCATTGTGATGCTTACACGATTGGTTGACAATTACAAG : ATGGTGAAGTGTGGGGACTACTTTCAGGCAGAGGATGGGCCTAGAACATTTGGCAATATATGTATTGTGACAAAATATATGACGAGTGATGCCTCCTTAGTGTTGCGAACTCTGGAGGTGAACTATATTGAG : TCAGAAGAACCACCTTTGTGTGTTTTACACATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCCAGAGACACACTTGCTGTTCGTGAGATTCTGAAACGAACGTACAATTTGCCTCTTGGTCTTGGACCAATTGTAGTACACTGCAGGTTTCTCTGATCACTGACCCTGTAAATGTGCTTTTTGAATTCTGTTATTTAATTGTTTGTGTAGCTTGATGCCTCATTCTCTTGTACAGTGCTGGTATCGGTAGGACTGGAACATATTGCACAATCCATAATACCATCCAGAGAATACTGGGTGGAGATATGTCTGCTCTTGACATCGTTAATACAGTAGCCATTTTTAGGTCTCAGCGAATTGGGATGGTCCAGACCATG : GATCAATACCTTTTCTGCTATGATGCCATTATTGATGAACTGGAAGACCTAATTTCAGATGACAATGGAGAGAAGAATCTGTAGTG : TAGCGATGAGTTAACAAGATCTTGGATTCTTGCTCACAATGGGATATGAAACAGTAGTTATGCTGAAGACACAAATCAGTTGGCTCTACTACAGTTGCTTCGTCTCGCTCTCTTTGCTTGGGATCCCAAGTTGTTCAAGAGATACCTGTTGCTATTTCCATCGACCTGAGAACTCATTTGGATCCACTATTTGAAATGCAAAGTGGAATGCCGATGTAAGATGTATCCTTTGGCTGACTGAATATAAATGAAGTTACAATGTTTGCAGATCCAGAAAATTATATTTCTGGTCATTATGGTTTTGCCGAGTAAACACGCTCATTCAACACTAAACTAAGTGAAACTGCTCACTTAATGATTATTTAGCATTGATGTGGATTTGAAATGGTGTATGCTGAAATATTTAAGTTGA</gDNA_template>
            <first_frame> *  T  K  K  E  K  K  K  N  K  K  S  R  N  H  G  Q  R  R  I  S  S  E  S  E  P  E  I  G  H  G  C  R  R  *  S  V  I  L  R  C  H  F  H  R  A  A  T  C  C  S  W  Y  C  *  *  I  F  G  F  L  C  *  F  S  S  T  E  N  R  T  V  A  *  S  A  *  S  L  F  G  S  T  *  S  I  *  A  E  K  V  S  L  S  G  Q  N  C  L  R  V  L  H  F  A   : G  K  *  A  E  S  F  R  N  E  E  *  M  L  G  G  F  G  Q  H  K  H  Q  Q  E  S  L  Y  *  C  H  P  I :   *  Q  *  Q  G  C  F  G  P  M  *  R  L  Q  T  V  S  *  G  I  Y  Q  C  K  L  Y  R   : D  I  *  R  G  V  S  V  C  C  N  T  R  S  T  S  T  H  L  *  R  L  L  G  N  D  N  P  A  T  L  S  C  H  C  D  A  Y  T  I  G  *  Q  L  Q   : D  G  E  V  W  G  L  L  S  G  R  G  W  A  *  N  I  W  Q  Y  M  Y  C  D  K  I  Y  D  E  *  C  L  L  S  V  A  N  S  G  G  E  L  Y  *   : V  R  R  T  T  F  V  C  F  T  H  S  V  S  *  M  A  *  P  W  S  S  Q  R  H  T  C  C  S  *  D  S  E  T  N  V  Q  F  A  S  W  S  W  T  N  C  S  T  L  Q  V  S  L  I  T  D  P  V  N  V  L  F  E  F  C  Y  L  I  V  C  V  A  *  C  L  I  L  L  Y  S  A  G  I  G  R  T  G  T  Y  C  T  I  H  N  T  I  Q  R  I  L  G  G  D  M  S  A  L  D  I  V  N  T  V  A  I  F  R  S  Q  R  I  G  M  V  Q  T  M  :  D  Q  Y  L  F  C  Y  D  A  I  I  D  E  L  E  D  L  I  S  D  D  N  G  E  K  N  L  *  C :   S  D  E  L  T  R  S  W  I  L  A  H  N  G  I  *  N  S  S  Y  A  E  D  T  N  Q  L  A  L  L  Q  L  L  R  L  A  L  F  A  W  D  P  K  L  F  K  R  Y  L  L  L  F  P  S  T  *  E  L  I  W  I  H  Y  L  K  C  K  V  E  C  R  C  K  M  Y  P  L  A  D  *  I  *  M  K  L  Q  C  L  Q  I  Q  K  I  I  F  L  V  I  M  V  L  P  S  K  H  A  H  S  T  L  N  *  V  K  L  L  T  *  *  L  F  S  I  D  V  D  L  K  W  C  M  L  K  Y  L  S  * </first_frame>
            <second_frame>  E  P  K  R  K  K  K  R  T  K  K  V  E  T  T  G  S  A  V  S  V  R  S  R  S  R  R  S  A  M  A  A  A  G  N  P  L  S  S  A  V  T  F  T  E  P  P  P  V  A  P  G  T  A  N  K  S  L  D  F  S  A  D  S  V  L  Q  R  I  V  L  S  P  D  Q  R  S  H  C  L  E  A  L  K  A  F  K  Q  K  R  C  H  S  P  D  K  I  A  S  E  F  S  T  L  Q  :  E  N  R  L  K  A  S  E  M  K  S  R  C  L  V  A  L  D  S  T  N  I  S  K  N  R  Y  T  D  V  I  P   : F  D  N  N  R  V  V  L  D  P  C  K  D  Y  R  P  S  A  K  G  Y  I  N  A  S  F  I  E  :  I  S  E  G  V  S  R  F  V  A  T  Q  G  P  L  A  H  T  F  E  D  F  W  E  M  I  I  Q  Q  R  C  P  V  I  V  M  L  T  R  L  V  D  N  Y  K  :  M  V  K  C  G  D  Y  F  Q  A  E  D  G  P  R  T  F  G  N  I  C  I  V  T  K  Y  M  T  S  D  A  S  L  V  L  R  T  L  E  V  N  Y  I  E  :  S  E  E  P  P  L  C  V  L  H  I  Q  Y  P  E  W  P  D  H  G  V  P  R  D  T  L  A  V  R  E  I  L  K  R  T  Y  N  L  P  L  G  L  G  P  I  V  V  H  C  R  F  L  *  S  L  T  L  *  M  C  F  L  N  S  V  I  *  L  F  V  *  L  D  A  S  F  S  C  T  V  L  V  S  V  G  L  E  H  I  A  Q  S  I  I  P  S  R  E  Y  W  V  E  I  C  L  L  L  T  S  L  I  Q  *  P  F  L  G  L  S  E  L  G  W  S  R  P  W :   I  N  T  F  S  A  M  M  P  L  L  M  N  W  K  T  *  F  Q  M  T  M  E  R  R  I  C  S   : V  A  M  S  *  Q  D  L  G  F  L  L  T  M  G  Y  E  T  V  V  M  L  K  T  Q  I  S  W  L  Y  Y  S  C  F  V  S  L  S  L  L  G  I  P  S  C  S  R  D  T  C  C  Y  F  H  R  P  E  N  S  F  G  S  T  I  *  N  A  K  W  N  A  D  V  R  C  I  L  W  L  T  E  Y  K  *  S  Y  N  V  C  R  S  R  K  L  Y  F  W  S  L  W  F  C  R  V  N  T  L  I  Q  H  *  T  K  *  N  C  S  L  N  D  Y  L  A  L  M  W  I  *  N  G  V  C  *  N  I  *  V   </second_frame>
            <third_frame>   N  Q  K  G  K  K  K  E  Q  K  K  S  K  P  R  A  A  P  Y  Q  F  G  V  G  A  G  D  R  P  W  L  P  P  V  I  R  Y  P  P  L  S  L  S  Q  S  R  H  L  L  L  L  V  L  L  I  N  L  W  I  S  L  L  I  Q  F  Y  R  E  S  Y  C  R  L  I  S  V  V  T  V  W  K  H  L  K  H  L  S  R  K  G  V  T  L  R  T  K  L  P  Q  S  S  P  L  C  R :   K  I  G  *  K  L  Q  K  *  R  V  D  A  W  W  L  W  T  A  Q  T  S  A  R  I  V  I  L  M  S  S  H  :  L  T  I  T  G  L  F  W  T  H  V  K  T  T  D  R  Q  L  R  D  I  S  M  Q  A  L  *  R :   Y  L  K  G  C  L  G  L  L  Q  H  K  V  H  *  H  T  P  L  K  T  S  G  K  *  *  S  S  N  A  V  L  S  L  *  C  L  H  D  W  L  T  I  T  R :   W  *  S  V  G  T  T  F  R  Q  R  M  G  L  E  H  L  A  I  Y  V  L  *  Q  N  I  *  R  V  M  P  P  *  C  C  E  L  W  R  *  T  I  L  S :   Q  K  N  H  L  C  V  F  Y  T  F  S  I  L  N  G  L  T  M  E  F  P  E  T  H  L  L  F  V  R  F  *  N  E  R  T  I  C  L  L  V  L  D  Q  L  *  Y  T  A  G  F  S  D  H  *  P  C  K  C  A  F  *  I  L  L  F  N  C  L  C  S  L  M  P  H  S  L  V  Q  C  W  Y  R  *  D  W  N  I  L  H  N  P  *  Y  H  P  E  N  T  G  W  R  Y  V  C  S  *  H  R  *  Y  S  S  H  F  *  V  S  A  N  W  D  G  P  D  H   : G  S  I  P  F  L  L  *  C  H  Y  *  *  T  G  R  P  N  F  R  *  Q  W  R  E  E  S  V  V  :  *  R  *  V  N  K  I  L  D  S  C  S  Q  W  D  M  K  Q  *  L  C  *  R  H  K  S  V  G  S  T  T  V  A  S  S  R  S  L  C  L  G  S  Q  V  V  Q  E  I  P  V  A  I  S  I  D  L  R  T  H  L  D  P  L  F  E  M  Q  S  G  M  P  M  *  D  V  S  F  G  *  L  N  I  N  E  V  T  M  F  A  D  P  E  N  Y  I  S  G  H  Y  G  F  A  E  *  T  R  S  F  N  T  K  L  S  E  T  A  H  L  M  I  I  *  H  *  C  G  F  E  M  V  Y  A  E  I  F  K  L  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0080C09.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83631" stop="83317"/>
                    <exon start="80475" stop="80379"/>
                    <exon start="80290" stop="80208"/>
                    <exon start="80081" stop="79947"/>
                    <exon start="78210" stop="78079"/>
                    <exon start="74340" stop="74182"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>918</number_coding_nucleotides>
                  <number_encoded_amino_acids>306</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPKRKKKRTKKVETTGSAVSVRSRSRRSAMAAAGNPLSSAVTFTEPPPVAPGTANKSLDFSADSVLQRIVLSPDQRSHCLEALKAFKQKRCHSPDKIASEFSTLQENRLKASEMKSRCLVALDSTNISKNRYTDVIPFDNNRVVLDPCKDYRPSAKGYINASFIEISEGVSRFVATQGPLAHTFEDFWEMIIQQRCPVIVMLTRLVDNYKMVKCGDYFQAEDGPRTFGNICIVTKYMTSDASLVLRTLEVNYIESEEPPLCVLHIQYPEWPDHGVPRDTLAVREILKRTYNLPLGLGPIVVHCRFL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0080C09.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74122" stop="73961"/>
                    <exon start="72690" stop="72607"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLILLYSAGIGRTGTYCTIHNTIQRILGGDMSALDIVNTVAIFRSQRIGMVQTMDQYLFCYDAIIDELEDLISDDNGEKNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 161 chains have been computed
$ 
$ memory statistics:
$ 52952 bytes spliced alignments in total
$ 25 spliced alignments have been stored
$ 2118 bytes was the average size of a spliced alignment
$ 7624 bytes predicted gene locations in total
$ 2 predicted gene locations have been stored
$ 3812 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 178 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 05:16:12
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