<?xml version="1.0" encoding="ISO-8859-1"?>
<GTH_output xmlns="http://www.genomethreader.org/GTH_output/" GTH_XML_version="1.1">
  <header xmlns="http://www.genomethreader.org/GTH_output/header/">
    <source program="GenomeThreader" version="0.9.54" build_date="2006-07-28 11:55:15" run_date="2009-12-01 05:18:42"/>
    <gDNA_template_files>
      <temp_name>/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/GenomeThreader_SGN_U_tomato/un_xed_seqs</temp_name>
    </gDNA_template_files>
    <reference_files>
      <file ref_name="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" type="ESTcDNA"/>
    </reference_files>
    <splice_site_parameters parameter_type="Bayesian" species="arabidopsis"/>
    <parameters>
      <parameter name="bssmfile" value="arabidopsis"/>
      <parameter name="scorematrixfile" value="BLOSUM62"/>
      <parameter name="searchmode" value="forward=True,reverse=True)"/>
      <parameter name="translationtable" value="1"/>
      <parameter name="frompos" value="0"/>
      <parameter name="topos" value="0"/>
      <parameter name="width" value="0"/>
      <parameter name="verbose" value="False"/>
      <parameter name="skipalignmentout" value="False"/>
      <parameter name="showintronmaxlen" value="120"/>
      <parameter name="minorflen" value="64"/>
      <parameter name="showseqnums" value="False"/>
      <parameter name="gs2out" value="False"/>
      <parameter name="maskpolyatails" value="False"/>
      <parameter name="noautoindex" value="False"/>
      <parameter name="minmatchlen" value="20"/>
      <parameter name="seedlength" value="16"/>
      <parameter name="exdrop" value="2"/>
      <parameter name="online" value="False"/>
      <parameter name="inverse" value="False"/>
      <parameter name="exact" value="False"/>
      <parameter name="chainwf" value="0.500000"/>
      <parameter name="gcmaxgapwidth" value="1000000"/>
      <parameter name="gcmincoverage" value="50"/>
      <parameter name="introncutout" value="False"/>
      <parameter name="autointroncutout" value="0"/>
      <parameter name="icinitialdelta" value="50"/>
      <parameter name="iciterations" value="2"/>
      <parameter name="icdeltaincrease" value="50"/>
      <parameter name="icminremintronlen" value="10"/>
      <parameter name="nou12intronmodel" value="False"/>
      <parameter name="u12donorprob" value="0.990000"/>
      <parameter name="u12donorprob1mism" value="0.900000"/>
      <parameter name="probies" value="0.500000"/>
      <parameter name="probdelgen" value="0.030000"/>
      <parameter name="identityweight" value="2.000000"/>
      <parameter name="mismatchweight" value="-2.000000"/>
      <parameter name="undetcharweight" value="0.000000"/>
      <parameter name="deletionweight" value="-4.000000"/>
      <parameter name="dpminexonlen" value="5"/>
      <parameter name="dpminintronlen" value="50"/>
      <parameter name="shortexonpenal" value="100"/>
      <parameter name="shortintronpenal" value="100"/>
      <parameter name="wzerotransition" value="80"/>
      <parameter name="wdecreasedoutput" value="80"/>
      <parameter name="leadcutoffsmode" value="RELAXED"/>
      <parameter name="termcutoffsmode" value="STRICT"/>
      <parameter name="cutoffsminexonlen" value="5"/>
      <parameter name="scoreminexonlen" value="50"/>
      <parameter name="minaveragessp" value="0.500000"/>
      <parameter name="minalignmentscore" value="0.900000"/>
      <parameter name="maxalignmentscore" value="1.000000"/>
      <parameter name="mincoverage" value="0.900000"/>
      <parameter name="maxcoverage" value="100.000000"/>
      <parameter name="intermediate" value="False"/>
      <parameter name="sortags" value="False"/>
      <parameter name="sortagswf" value="1.000000"/>
      <parameter name="first" value="0"/>
      <parameter name="exondistri" value="False"/>
      <parameter name="introndistri" value="False"/>
      <parameter name="refseqcovdistri" value="False"/>
    </parameters>
    <overall_reference_type>ESTcDNA</overall_reference_type>
  </header>
  <alignment_module>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U600755" ref_strand="+" ref_description="SGN-U600755 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157358097|emb|CAO65142.1| (e_value=3e-61) unnamed; (*ATH) AT1G34320.1 (e_value=1e-50) | Symbol: None | expressed protein, contains Pfam domain PF05003: protein of unknown function (DUF668) | chr1:12520691-12524341 FORWARD | Aliases: F23M19.3, F23M19_3; ">
      <seq>cggccgggggtccgaaatgaacaggaaatcttcaagccaggttgatcttcttcgaattgagacactgtatcatgcaaataaggagaaaacagaagcatatattcttgaattagtggtgtggctccattatcttgtcagtcagtcgaaacgtgctaatgctggagtgagatctccagtaaaatctccaatctgttcccctaatcaaaagacgattgagttgtctaatcaccaatcaagctctccatcatccccattatcggttgaagaccaagaaatgctccgcgatgtaagcaagaaaaaactcactccagggattagcaagtctcaagaatttgcaaaaacagggttgagcaagtacaacaggctgagtaagagcaatagccattcacctataaatgaaaccagaaagaacccgttccctatcaagagaccgtcttctgttccagtgtttgactttgacactgatcgcttgaaagctttggatgtcatcgacagggtggacacagttagaggtgcataattggtacaacactaggctgcattgccatgttcatagtgtgatagtatgtttatttactgcattggcaaaacgtaaatagagagcacaagttttagttagctgtacattggctatattatgatggcctacaaatgcttcccttgtgttatgtcctgtttgtgtctgggaactggactgtccctaacgcgaactagatcagatatctgtttgcc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0080C09.1" temp_strand="-" temp_description="C00HBa0080C09.1  CU928194.8 htgs_phase:3 submitted_to_sgn_as:C00HBa0080C09 sequenced_by:sanger upload_account_name:uk">
        <position start="18830" stop="17503"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="18524" g_stop="17802" g_length="723"/>
          <reference_exon_boundary r_type="cDNA" r_start="10" r_stop="732" r_length="723" r_score="0.994"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0080C09.1" gen_strand="-" ref_id="SGN-U600755" ref_strand="+">
        <total_alignment_score>0.994</total_alignment_score>
        <cumulative_length_of_scored_exons>723</cumulative_length_of_scored_exons>
        <coverage percentage="0.988" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0080C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U600755" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="18524" e_stop="17802"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTCCGAAATGAACAGGAAATCTTCAAGCCAGGTTGATCTTCTTCGAATTGAGACACTGTATCATGCAGATAAGGAGAAAACAGAAGCATATATTCTTGAATTAGTGGTGTGGCTCCATTATCTTGTCAGTCAGTCGAAACGTGCTAATGCTGGAGTGAGATCTCCAGTAAAATCTCCAATCTGTTCCCCTAATCAAAAGACGATTGAGTTGTCTAATCACCAATCAAGCTCTCCATCATCCCCATTATCGGTTGAAGACCAAGAAATGCTCCGCGATGTAAGCAAGAGAAAACTCACTCCAGGGATTAGCAAGTCTCAAGAATTTGCAAAAACAGGGTTGAGCAAGTACAACAGGCTGAGTAAGAGCAATAGCCATTCACCTATAAATGAAACCAGAAAGAACCCGTTCCCTATCAAGAGACCGTCTTCTGTTCCAGTGTTTGACTTTGACACTGATCGCTTGAAAGCTTTGGATGTCATCGACAGGGTGGACACAGTTAGAGGTGCATAATTGGTACAACACTAGGCTGCATTGCCATGTTCATAGTGTGATAGTATGTTTATTTACTGCATTGGCAAAACGTAAATAGAGAGCACAAGTTTTAGTTAGCTGTACATTGGCTATATTATGATGGCCTACAAATGCTTCCCTTGTGTTATGTCCTGTTTGTGTCTGGGAACTGGATTGTCCCTAACGCGAACTAGATCAGATATCTGTTTGCA</genome_strand>
        <mrna_strand>GTCCGAAATGAACAGGAAATCTTCAAGCCAGGTTGATCTTCTTCGAATTGAGACACTGTATCATGCAAATAAGGAGAAAACAGAAGCATATATTCTTGAATTAGTGGTGTGGCTCCATTATCTTGTCAGTCAGTCGAAACGTGCTAATGCTGGAGTGAGATCTCCAGTAAAATCTCCAATCTGTTCCCCTAATCAAAAGACGATTGAGTTGTCTAATCACCAATCAAGCTCTCCATCATCCCCATTATCGGTTGAAGACCAAGAAATGCTCCGCGATGTAAGCAAGAAAAAACTCACTCCAGGGATTAGCAAGTCTCAAGAATTTGCAAAAACAGGGTTGAGCAAGTACAACAGGCTGAGTAAGAGCAATAGCCATTCACCTATAAATGAAACCAGAAAGAACCCGTTCCCTATCAAGAGACCGTCTTCTGTTCCAGTGTTTGACTTTGACACTGATCGCTTGAAAGCTTTGGATGTCATCGACAGGGTGGACACAGTTAGAGGTGCATAATTGGTACAACACTAGGCTGCATTGCCATGTTCATAGTGTGATAGTATGTTTATTTACTGCATTGGCAAAACGTAAATAGAGAGCACAAGTTTTAGTTAGCTGTACATTGGCTATATTATGATGGCCTACAAATGCTTCCCTTGTGTTATGTCCTGTTTGTGTCTGGGAACTGGACTGTCCCTAACGCGAACTAGATCAGATATCTGTTTGCC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U594817" ref_strand="+" ref_description="SGN-U594817 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|157358096|emb|CAO65141.1| (e_value=7e-73) unnamed; (*ATH) AT1G34320.1 (e_value=2e-68) | Symbol: None | expressed protein, contains Pfam domain PF05003: protein of unknown function (DUF668) | chr1:12520691-12524341 FORWARD | Aliases: F23M19.3, F23M19_3; ">
      <seq>cttaaacttaagtagcggttttgtgtcaaacatggcaaccaagggaaataaaatttcaattttggcatttgaagttgcaaataccattgtcaaggctgccaatcttattcattctctttcagaagaaaatgtgaaacatttgaaggaggtggtgcttctttcagaaggtgtgcagctcctgataacaaaggatatggatgaactcttgagaattgctgcagcagacaagagggatgaactgaaaatattctccggtgaagtggttcgttttggaaatcgctgtaaagatcctcaatggcacaacttggaacgttactttgaaaagctggaatctgaactgacacctcatgagcacttgaaagaagaagcagaggctctaatggtgcagttgatgatctcggttcagtatacagctgaactgtaccatgaattccatgctttggacagatttgagcaagattatcgacgtaaagttcaagaagaggatacttcaagtgctactcagagaggtattccataacgacagttatgttttgttatttgtgattcttttaagcagattgaagctcaaatttcccgtagatgaaatttgaacttaagttgctccaatgtgttcatcatattatattgtttatgaacatga</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0080C09.1" temp_strand="-" temp_description="C00HBa0080C09.1  CU928194.8 htgs_phase:3 submitted_to_sgn_as:C00HBa0080C09 sequenced_by:sanger upload_account_name:uk">
        <position start="28487" stop="25039"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="28187" g_stop="27957" g_length="231"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="231" r_length="231" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="27956" i_stop="27866" i_length="91">
            <donor d_prob="0.956" d_score="1.00"/>
            <acceptor a_prob="0.989" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="27865" g_stop="27773" g_length="93"/>
          <reference_exon_boundary r_type="cDNA" r_start="232" r_stop="324" r_length="93" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="27772" i_stop="27677" i_length="96">
            <donor d_prob="0.799" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="27676" g_stop="27586" g_length="91"/>
          <reference_exon_boundary r_type="cDNA" r_start="325" r_stop="415" r_length="91" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="27585" i_stop="25567" i_length="2019">
            <donor d_prob="0.999" d_score="1.00"/>
            <acceptor a_prob="0.839" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="25566" g_stop="25339" g_length="228"/>
          <reference_exon_boundary r_type="cDNA" r_start="416" r_stop="643" r_length="228" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0080C09.1" gen_strand="-" ref_id="SGN-U594817" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>643</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0080C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U594817" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="28187" e_stop="27957"/>
          <exon e_start="27865" e_stop="27773"/>
          <exon e_start="27676" e_stop="27586"/>
          <exon e_start="25566" e_stop="25339"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>CTTAAACTTAAGTAGCGGTTTTGTGTCAAACATGGCAACCAAGGGAAATAAAATTTCAATTTTGGCATTTGAAGTTGCAAATACCATTGTCAAGGCTGCCAATCTTATTCATTCTCTTTCAGAAGAAAATGTGAAACATTTGAAGGAGGTGGTGCTTCTTTCAGAAGGTGTGCAGCTCCTGATAACAAAGGATATGGATGAACTCTTGAGAATTGCTGCAGCAGACAAGAGGTGCTAAGATTCTGAGATAGCTTATTGTCGTATAAGTTGTTACTTTTAAGTTTTGTCAGCCAGAGTGAACTTCTATTCTGTAATATGGCAGGGATGAACTGAAAATATTCTCCGGTGAAGTGGTTCGTTTTGGAAATCGCTGTAAAGATCCTCAATGGCACAACTTGGAACGTTACTTTGAAAAGTAACTGTTATAAGCTTTTATCTGTTATTTCTTGCTTGTCATCAGTACACCTCAGTGCGTGATTATGTCATTTATAATACATTTCATTATATTTAGGCTGGAATCTGAACTGACACCTCATGAGCACTTGAAAGAAGAAGCAGAGGCTCTAATGGTGCAGTTGATGATCTCGGTTCAGTATACAGCTGTAAGTTTTATCTCATTATTCATTCATCTTTTGATCTCCCATTGCTGTGTTTATTCCGTTATCTTATCATTGTTTGATCCTTTAGTTTGGTTTCAAAAATTAGTGGAGAAGAAATTAGGATCTTGTGTTGTCCATGATTGAAGAGGTCATGCAAAATTAGGACTGTTAGAAAAGCACACTAGTTATTGATGCTCTGTCAAAGTAGATTACTGTGACTACGAACCCAACTAAATGTAACTAGCACAGTCACTGCTGTGTCATCGGCTGTTCTCTGAAAATCTTAAGAAGACCGTGTGAAATCATAGAAGGTAATTTATCTTGGTGGCCTACAACGTGGATTCACAGTATCTTATTATCACATTCATAGTAATTAGTGGGAAATATTGTCTCTCGCAAAGCAAGGAGAAAATATTTGCCGCCATGAAGGTGATTTCATTTGCGCTTCTCTTTTGGGAGATGGAAGAACATGAGAGGCGCATGACTTCCAGCCAAATCTAATTGCTCACTTTTGGAGGTGGATATCCTTAATGCTGATGAATATAGTTTACCAATTTCAAAAAAAAAAAAAAACCATTTGAATCAATTCATGTTAATTTTATTTCGACTCTGTATTGCTTGAAAAGTTGATCACGAAGTGGTGCTTTGGCTCGAAAACAAATTGAAAATTGCAATACCTTCTTGATGCATTGTTAATGGATAACTTGCTTCATAAGGAATGACTATATCATCAACATACACAAGCAGATAGATAAGAATATCATGTATAGAATGTGGAGAGAAGACATAATGATCTGACTTGGCCATTCTATCCCAACTCCTGGACTACTTGGCTGAAGCGTTTAAAGCCCGAGAGAACCCATAAAGGAACCATCCAAATAGACATATTAGATTGGATTATCCCCCCTTTACTTATACATAGGACCCGATTAGCCTTTTCGATTGTTGTTTAGAGACTAAAGACCCGTCTAGTCCCAAAAGCTGACGAAACAGGAGCCCATTCTTACTTTGATTGATTTAAACACATTATTTCTAGTTACCCTTCCCCCTTCCAAACAACAAAACCAGGAGGTTGGTCCATATAACCTTCTTTTTTCCTGATTTGGCGTTGTTGCTGCCATATCTGAGCTCCATTCATGATAGATTTAGGATCACTCTCGTTCCTTCACCCTTGCATGTGGTTTAGTGATACACAGTTTTTGGAATAAAGTTCTTTCCATTCTTCCCAGCAGTAATGTTCCCTACTGCACCTGAAGGCTATTGTCCTAGATAGGAATTTGGAAAGCCATAAAGGATCTCCCGGGTTCAAAATCTTCTGGTCATTTGGAGTGTACATTCCCTAGCAATTTACTATATATTGATGCAAATATTGATCCTGCTTGACGATCAAAATTGCCTAAGTCTCTTGCCATGGTATTCTCCATATCAGGGGATAATGATGGCAAGCTCATTACAGCTTTGTAGGATCTTAAAATTTTTCCCTGACTACTGATAGACATCATAATACTCTAGCAAACAGCATTAAAGTTCTCTTACCTTCAAGGTCGCATCAGCATTAAAGTTCTCTTACTTTCAAGGTTGCATCACATCATCCGTATTTGTTTTATTAAAAATCTGGAATGAGATTTATGATGAATTGCTTCATTTGGAGCAATGAACTTTGCATTTAGTTTACTATAACTGAAATCTTTACAACGAGAATTGCACTTTGGATGCCTAGGAAGAAAAGATCCCTCGGAAATATCTTGTGTTTGCATTTGTATGTTTGGTAAGAATTCAAGCCTAACATTTAAGAATTTTTTAGAGCCATACTTGTGGGAGGTTGGTTAGTATGGATTCTTTATAGACGACCCAATATCAGTACTATCCTCACTAAGAGCTCTGTGGTTATCACAAAGGAACAACTGGAATTTGCTTATTAGTTCACTTTCTGTAATTGAGGACATCAACCTGCATTCTGCTTTTCCCTAAAAATTTATCTGGCTCAGGTTCTAGAAAGGATAATTAGTCTGCGTTTTGCAGGAACTGTACCATGAATTCCATGCTTTGGACAGATTTGAGCAAGATTATCGACGTAAAGTTCAAGAAGAGGATACTTCAAGTGCTACTCAGAGAGGTATTCCATAACGACAGTTATGTTTTGTTATTTGTGATTCTTTTAAGCAGATTGAAGCTCAAATTTCCCGTAGATGAAATTTGAACTTAAGTTGCTCCAATGTGTTCATCATATTATATTGTTTATGAACATGA</genome_strand>
        <mrna_strand>CTTAAACTTAAGTAGCGGTTTTGTGTCAAACATGGCAACCAAGGGAAATAAAATTTCAATTTTGGCATTTGAAGTTGCAAATACCATTGTCAAGGCTGCCAATCTTATTCATTCTCTTTCAGAAGAAAATGTGAAACATTTGAAGGAGGTGGTGCTTCTTTCAGAAGGTGTGCAGCTCCTGATAACAAAGGATATGGATGAACTCTTGAGAATTGCTGCAGCAGACAAGAG...........................................................................................GGATGAACTGAAAATATTCTCCGGTGAAGTGGTTCGTTTTGGAAATCGCTGTAAAGATCCTCAATGGCACAACTTGGAACGTTACTTTGAAAA................................................................................................GCTGGAATCTGAACTGACACCTCATGAGCACTTGAAAGAAGAAGCAGAGGCTCTAATGGTGCAGTTGATGATCTCGGTTCAGTATACAGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGTACCATGAATTCCATGCTTTGGACAGATTTGAGCAAGATTATCGACGTAAAGTTCAAGAAGAGGATACTTCAAGTGCTACTCAGAGAGGTATTCCATAACGACAGTTATGTTTTGTTATTTGTGATTCTTTTAAGCAGATTGAAGCTCAAATTTCCCGTAGATGAAATTTGAACTTAAGTTGCTCCAATGTGTTCATCATATTATATTGTTTATGAACATGA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U564898" ref_strand="+" ref_description="SGN-U564898 Tomato 200607#2 [2 ESTs aligned] (*GB) gi|157358096|emb|CAO65141.1| (e_value=2e-54) unnamed; (*ATH) AT1G34320.1 (e_value=3e-41) | Symbol: None | expressed protein, contains Pfam domain PF05003: protein of unknown function (DUF668) | chr1:12520691-12524341 FORWARD | Aliases: F23M19.3, F23M19_3; ">
      <seq>aagaagaagaacactttctttgggtctgagactgaccttggtcttcccgtttactcctcaccctgcaccgcttcatacgctccaaaaatgctaaaacaaaacacccattgaagcaaaatccctttttcttgattttgtgttaaagaaaaagagttgcagaatcccaagttttcatctttactagttttctcttgttggtggtaggttgtcaaggaggtttcacagagtgtagcttgggattgaaataggtggaaggtcattatccagaagatgggtggtctttgttctagaagggctaacgctgatagcacaacggatcatggcattccacatgggaatggtcatcttagttatggtgctggaactgtttatcagtcgcgtggattgcccatacaactaagcagtgatcctatgccccctgctggggaaagccagcagctaactgaaccaacattatcttatccagagatgaatgatatttctcttgggattcctatggatgatgttgatgatggaattccaatattgtcaagggttttatccaacaagtccatatcagcaaggtcaaagcaagttgcaattgcaaaggtttccgaaatgagttcactgttgggaagagcaggtacggcggggcttgggaaggctgtaaatgtgttggacacactgggtagcagcatgacaaacttaaacttaagtagcggttttgtgtcanacatggcaaccaagggaaataaaatttcaattttggcatttgaagttgcaaataccattgtcanggctgccnatcntatgcattctctttcanannaantgtgaanc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0080C09.1" temp_strand="-" temp_description="C00HBa0080C09.1  CU928194.8 htgs_phase:3 submitted_to_sgn_as:C00HBa0080C09 sequenced_by:sanger upload_account_name:uk">
        <position start="32194" stop="27761"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="31894" g_stop="31696" g_length="199"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="198" r_length="198" r_score="0.995"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="31695" i_stop="31167" i_length="529">
            <donor d_prob="0.833" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="31166" g_stop="30777" g_length="390"/>
          <reference_exon_boundary r_type="cDNA" r_start="199" r_stop="588" r_length="390" r_score="0.997"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="30776" i_stop="28283" i_length="2494">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.978" a_score="0.98"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="28282" g_stop="28051" g_length="232"/>
          <reference_exon_boundary r_type="cDNA" r_start="589" r_stop="819" r_length="231" r_score="0.948"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0080C09.1" gen_strand="-" ref_id="SGN-U564898" ref_strand="+">
        <total_alignment_score>0.983</total_alignment_score>
        <cumulative_length_of_scored_exons>821</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0080C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U564898" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="31894" e_stop="31696"/>
          <exon e_start="31166" e_stop="30777"/>
          <exon e_start="28282" e_stop="28051"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AAGTAAGAAGAACACTTTCTTTGGGTCTGAGACTGACCTTGGTCTTCCCGTTTACTCCTCACCCTGCACCGCTTCATACGCTCCAAAAATGCTAAAACAAAACACCCATTGAAGCAAAATCCCTTTTTCTTGATTTTGTGTTAAAGAAAAAGAGTTGCAGAATCCCAAGTTTTCATCTTTACTAGTTTTCTCTTGTTGGGTAAGTGCTTTTTTTTTTTTTGGTTTATATGTGATTGTTAGTGTTTTAATTTGATTGACTCAGATTGGGATTTGAACCCTTTCTTTAAGGCTGTGTATAGCTTACTCTTTAGGGTGCAGCCATTTCCTGGAACTTTGTTTGAATGTGGGATGTTTAGACTGTTCCTTAGTGCTGTTTATGTGCATTTGGTGATAATTGACATGCTAATTCCAAGTTTTTATTTTATTTTATTGTGTTATCATTATCTATTTGTTTTACTTTGGAGTTTGGTGTTCAATTTGATAATTGCTTCTTTACAAGTTTTTTGAGATAAAAAAGATGTTTTTTTTTCTTTTTAGTGTTTGGGGATTAGTGTTGTAATGATATGGTCTGTGATTTGAGTTTAATTGACTTAGGTAACAGTTGTTATTATAGTTGGTACCATGGAATTATTTGTTTGGGATTAAGACGTCGGTGTTGTTAATATATTTGAAAACAGTACATGTGAGTGATTTTAGAGGGAAGCTTTGACAGTTTCAGCATTCTGCAGTGGTAGGTTGTCAAGGAGGTTTCACAGAGTGTAGCTTGGGATTGAAATAGGTGGAAGGTCATTATCCAGAAGATGGGTGGTCTTTGTTCTAGAAGGGCTAACGCTGATAGCACAACGGATCATGGCATTCCACATGGGAATGGTCATCTTAGTTATGGTGCTGGAACTGTTTATCAGTCGCGTGGATTGCCCATACAACTAAGCAGTGATCCTATGCCCCCTGCTGGGGAAAGCCAGCAGCTAACTGAACCAACATTATCTTATCCGGAGATGAATGATATTTCTCTTGGGATTCCTATGGATGATGTTGATGATGGAATTCCAATATTGTCAAGGGTTTTATCCAACAAGTCCATATCAGCAAGGTCAAAGCAAGTTGCAATTGCAAAGGTGAGTGGTCAGTTTCATATGCTATGTTATGTCCTTTGGCTATGACCTAGTGCATTTATCTCTTTCCTTATTCTTGCTAGTAGTTATTTGAAAATTTCTAACATAGGAGTTTATAAAGATAAATGGACCCCATTGCGATAAGCAAATGTGAATTCACTTATGCAAATAAGATTTTCCAGCAACGTGATAAACAAAATGTGAAACTATAGGATAAGAAAACGAATGGAGGAACTAAAGGATGCTTGCGGTTCCGTAGTGTTTGTTTTTGGAGTATGTTATTTGTCACGTATATTAGGGGAAAACCCAGTGTGGTTGTGACTAGCTACTTGGCCATTTTAGTCTCATCTTTTACCATCCTCTCATATAATTGAACAATGTAATCTATAACCCCCTGAAATATTCAGTACTCTTTATCAGAATGCTGATATTGCATGAGTCAGATTGTCCATGCAGAGGGGCTTCAATAAAAAATGGAAACCGAATCTAACTGTAAACCAAACTAGTGTTGGCAAATGGGCGGAACGGATTGGATATGGGTGGGTTCTAGATGGATTAGACAAAAACAGATAAATTATCCCGCCTGCCAATATTTAATATGCTGAAAGAAAAATAACTCTCCGCTTAGATAACCTGCCTAAGCTCCCCACAACAACTCTTTCATACAACTCATTAGAAAACCATCTACTTGAGTACTATTTTGAAAAATGTACCAATTAAAAGAAGTACAAAAAAATCTAGTGTAATTTAAAAAGAGAGATAAAAAATCAGATTTAGGAACTAAAGGATGCTTGCTTTGTATCAGATGATGTTTCTAAATCTGATTTAGTCGATGACATTCAGAAGCAAAAGCAAATTTGTTAACACTTCGAAGAGAGCATGTGCTGCTGAAGGTTTATTTAATAAGACGACAAAATGTGAACTTTGGTGAATAAACTTGGCTGTGAAAAGGCCTTTCGGTTTTGCCTTTCTTTTGTCTTGTTTCTTTTTCTTTTTTTCTTCTGCCAAATTATTTGTTTCCTTTTTAAGCAAATCAAAACAAGATGTGCTAACTAATTGAAACTATTTTCTTCAATTACTCAATAAATGTAATTAATTGAAAATGAGTTTAAAATAAAATATCAACAGTACATCTAAAGGAAATATTTAGATGTTAAAATAGAACTATATAGAAAGTAAAATGGAGGATGAAAATTTAACTTTGCATACACGTGTAAGTTGGAATATAAATTGTTGTTAAGTTTTTTAACAATGTTTTGATCAGATTGAAAGATTATGAATAAGAAGTACAAAAGAACATGACAGAAATGCAGAATGGAAAAAAACATTTAAAGCTACAGGGTACGGGAAAAAAGAAAAATAACTTTTGATAGTACCGTTTTAACTTCTCTATTATAATAATGAATCCCACATCTTACATTCTGAACTTCATAATTGAAATATAAAACCATGATTCTTTATCTTTCCTTTATAACATTAATAAGAAAAAATGTGTAACAAAAGATCATTAGCCTTAATGATCTAGAAAGCAATAGTCGGTCCTCCTTTACCTTTGCCAATTGATGTAGAAAGCAATAGTGGGTTGTATGAGTTTGGAAGGGGCTGGAAATTGTAAAACCCATTATTTATCCCTCAAGTATCTGTCTTTAGTGGGTAATATGGACATTATCATATCTCATCCGTTTTAAAAAATGAACTATCGAAACCGTTTTTAATTGTGTTGGTTGGATGGATACTTGATTTTCATCCATTTTGCAACAGTAAATCAAACTAAAGCCACGTAAAAAATCTGCACGTTCTTTGACTTTGGTTTATTCGGTTTTAAATTTGGAATAATCATCAATATGATTCTGTTTTATAATTATAAAAAGTTCTTAACCAAAAGAAACTCTCTCTCTGTATATACTTATGCATGTGCATGTATATGTATTTGTCAGTTTATAACCTCCTACGAACATAACTATGTATTCTTATAGAGAATTTTTTTTAAACAACCTTATGTATTTTTGCCCATAAAATAAATGTAAGGACATTTTTCAAGGTACTTGCTTTGAGTTTTGTGTTCTTCTATGTTGAAGTTCTCTTGGAGAAGGTGATTTTTTTTTGTTTTAATTATTAAGGTAAAGTTAATGTGAAAGCATATATGGATATAAATTGATTGTTTGATTTATGAATGTGAACATTGTCATGTCCCAAGATGACATTTCTCACAGATGTTTGGACTGATAATAGGTTTATCTATTTGTTTGATTCTTCCTAATCATATATCGACATATGAGAATTTTCTCCTTTGATTCTAGGAGATTGAATATGTGTCGTGTGAGAAAAAGGAAAAATCCAAATAAACCGACAAAATAGAAACAAGACTCTATTTGGTTTGGTTATTTAGCAAACTGACACAGCTGTTTCTTGTAAATAAAAATAGAATCTAACTGAATCATGAACATCCTTAAATTTCGGCATTCTAATTGGAATTTAACTATTATTTGCTAGACAGGTTTCCGAAATGAGTTCACTGTTGGGAAGAGCAGGTACAGCGGGGCTTGGGAAGGCTGTAAATGTGTTGGACACACTGGGTAGCAGCATGACAAACTTAAACTTAAGTAGCGGTTTTGTGTCAAACATGGCAACCAAGGGAAATAAAATTTCAATTTTGGCATTTGAAGTTGCAAATACCATTGTCAAGGCTGCCAATCTTATTCATTCTCTTTCAGAAGAAAATGTGAAAC</genome_strand>
        <mrna_strand>AAG-AAGAAGAACACTTTCTTTGGGTCTGAGACTGACCTTGGTCTTCCCGTTTACTCCTCACCCTGCACCGCTTCATACGCTCCAAAAATGCTAAAACAAAACACCCATTGAAGCAAAATCCCTTTTTCTTGATTTTGTGTTAAAGAAAAAGAGTTGCAGAATCCCAAGTTTTCATCTTTACTAGTTTTCTCTTGTTGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTAGGTTGTCAAGGAGGTTTCACAGAGTGTAGCTTGGGATTGAAATAGGTGGAAGGTCATTATCCAGAAGATGGGTGGTCTTTGTTCTAGAAGGGCTAACGCTGATAGCACAACGGATCATGGCATTCCACATGGGAATGGTCATCTTAGTTATGGTGCTGGAACTGTTTATCAGTCGCGTGGATTGCCCATACAACTAAGCAGTGATCCTATGCCCCCTGCTGGGGAAAGCCAGCAGCTAACTGAACCAACATTATCTTATCCAGAGATGAATGATATTTCTCTTGGGATTCCTATGGATGATGTTGATGATGGAATTCCAATATTGTCAAGGGTTTTATCCAACAAGTCCATATCAGCAAGGTCAAAGCAAGTTGCAATTGCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCGAAATGAGTTCACTGTTGGGAAGAGCAGGTACGGCGGGGCTTGGGAAGGCTGTAAATGTGTTGGACACACTGGGTAGCAGCATGACAAACTTAAACTTAAGTAGCGGTTTTGTGTCANACATGGCAACCAAGGGAAATAAAATTTCAATTTTGGCATTTGAAGTTGCAAATACCATTGTCANGGCTGCCNATCNTATGCATTCTCTTTCA-NANNAANTGTGAANC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U598139" ref_strand="+" ref_description="SGN-U598139 Tomato 200607#2 [1 ESTs aligned] ">
      <seq>agggttttatctctctaaaaagttccaagagctgcgcagcagctaagttaagaattctcttatctccttcacctttcaccggtctctttgaggtaagaaatcgatttctccggtctccttctcctttcgattgcttccgtcttaagtgaacggtgaaattgctcctgttttcttcatcctcaggtgaaaggtgagcttctacctttggtaatttctcttttttcatatgttcggtgagcttctagtccggtgaagaggaggattttgacttctatttggtgaaaataattgggaaaatgggatggggttatcagggaagagcattagtcttctttaaattttattggatacgtgatgttagtcatattgataaaccac</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0080C09.1" temp_strand="-" temp_description="C00HBa0080C09.1  CU928194.8 htgs_phase:3 submitted_to_sgn_as:C00HBa0080C09 sequenced_by:sanger upload_account_name:uk">
        <position start="70192" stop="69215"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="69892" g_stop="69515" g_length="378"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="378" r_length="378" r_score="0.976"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0080C09.1" gen_strand="-" ref_id="SGN-U598139" ref_strand="+">
        <total_alignment_score>0.976</total_alignment_score>
        <cumulative_length_of_scored_exons>378</cumulative_length_of_scored_exons>
        <coverage percentage="1.000" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0080C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U598139" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="69892" e_stop="69515"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGGGTTTTATCTCTCTAAAAAGTTCCAAGAGCTGCGCAGCAACTAAGTTAAGAATTCTCTGATCTCCTTCACCTTTCACCGGTCACTTTGAGGTAAGAAATCGATTTCTCCGGTCTCCTTCTCCTTTCGATTGCTCCCGTCTTAAGTGAACGGTGAAATTGCTCCTGTTTTCTTCATCCTCAGGTGAAAGGTGAACTTCTACCTTTGGTAATTTCTCTTTTTTCATATGTTCGGTGAGCTTCTAGTCCGGTGAAGAGGAGGGTTTTGACTTCTATTTGGTGAAAATAATTGGAAAAATGGGATGGGGTTATCAGGGAAGAGCAGTAGTCTTCTTTAAATTTTATTGGATACATGATGTTAGTCATATTGATAAACCAC</genome_strand>
        <mrna_strand>AGGGTTTTATCTCTCTAAAAAGTTCCAAGAGCTGCGCAGCAGCTAAGTTAAGAATTCTCTTATCTCCTTCACCTTTCACCGGTCTCTTTGAGGTAAGAAATCGATTTCTCCGGTCTCCTTCTCCTTTCGATTGCTTCCGTCTTAAGTGAACGGTGAAATTGCTCCTGTTTTCTTCATCCTCAGGTGAAAGGTGAGCTTCTACCTTTGGTAATTTCTCTTTTTTCATATGTTCGGTGAGCTTCTAGTCCGGTGAAGAGGAGGATTTTGACTTCTATTTGGTGAAAATAATTGGGAAAATGGGATGGGGTTATCAGGGAAGAGCATTAGTCTTCTTTAAATTTTATTGGATACGTGATGTTAGTCATATTGATAAACCAC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U577772" ref_strand="+" ref_description="SGN-U577772 Tomato 200607#2 [30 ESTs aligned] (*GB) gi|47558926|gb|AAT35563.1| (e_value=3e-118) protein tyrosine phosphatase; PTP [Phaseolus vulgaris]; (*ATH) AT1G71860.3 (e_value=3e-116)  Symbol: None | similar to protein tyrosine phosphatase; PTP [Phaseolus vulgaris] (GB:AAT35563.1); contains InterPro domain Protein tyrosine phosphatase, catalytic region (InterPro:IPR003595); contains InterPro domain Tyrosine specific protein phosph... ; (*SWP) sp|Q64605|PTPRD_RAT (e_value=4e-36) Receptor-type tyrosine-protein phosphatase delta OS=Rattus norvegicus GN=Ptprd; ">
      <seq>ggaaaaaaaaaagaacaaaaaaagtcgaaaccacgggtagcgccgtatcagttcggagtcggagccggagatcggccatggcttccgccggtaatccgttatcctccgctgtcactttcacagagccgccacctgttgctcctggtactgctaataaatctttggatttctctgctgattcagttctacagagaatcgtactgtcgcctgatcagcgtagtcactgtttggaagcacttaaagcatttaagcagaaaaggtgtcactctccggacaaaattgcctcagagttctccactttgcaggaaaataggctgaaagcttcagaaatgaagagtagatgcttggtggctttggacagcacaaacatcagcaagaatcgttatactgatgtcatcccatttgacaataacagggttgttttggacccatgtaaagactacagaccgtcagctaagggatatatcaatgcaagctttatagagatatctgaaggggtgtctcggtttgttgcaacacaaggtccactagcacacacctttgaagacttctgggaaatgataatccagcaacgctgtcctgtcattgtgatgcttacacgattggttgacaattacaagatggtgaagtgtggggactactttcaggcagaggatgggcctagaacatttggcaatatatgtattgtgacaaaatatatgacgagtgatgcctccttagtgttgcgaactctggaggtgaactatattgagtcagaagaaccacctttgtgtgttttacacattcagtatcctgaatggcctgaccatggagttcccagagacacacttgctgttcgtgagattctgaaacgaacgtacaatttgcctcttggtcttggaccaattgtagtacactgcagtgctggtatcggtaggactggaacatattgcacaatccataataccatccagagaatactgggtggagatatgtctgctcttgacatcgttaatacagtagccatttttaggtctcagcgaattgggatggtccagaccatggatcaataccttttctgctatgatgccattattgatgaactggaagacctaatttcagatgacaatggagagaagaatctgtagtgtagcgatgagttaacaagatcttggattcttgctcacaatgggatatgaaacagtagttatgctgaagacacaaatcagttggctctactacagttgcttcgtctcgctctctttgcttgggatcccaagttgttcaagagatacctgttgctatttccatcgacctgagaactcatttggatccactatttgaaatgcaaagtggaatgccgatgtaagatgtatcctttggctgactgaatataaatgaagttacaatgtttgcagatccagaaaattatatttctggtcattatggttttgccgagtaaacacgctcattcaacactaaactaagtgaaactgctcacttaatgattatttagcattgatgtggatttgaaatggtggaatagtcataaagctaactctagactagttc</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0080C09.1" temp_strand="-" temp_description="C00HBa0080C09.1  CU928194.8 htgs_phase:3 submitted_to_sgn_as:C00HBa0080C09 sequenced_by:sanger upload_account_name:uk">
        <position start="83921" stop="71757"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83621" g_stop="83317" g_length="305"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="305" r_length="305" r_score="0.993"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83316" i_stop="80476" i_length="2841">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80475" g_stop="80379" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="306" r_stop="402" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80378" i_stop="80291" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80290" g_stop="80208" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="403" r_stop="485" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80207" i_stop="80082" i_length="126">
            <donor d_prob="0.846" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80081" g_stop="79947" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="486" r_stop="620" r_length="135" r_score="1.000"/>
        </exon>
        <intron i_serial="4">
          <gDNA_intron_boundary i_start="79946" i_stop="78211" i_length="1736">
            <donor d_prob="0.968" d_score="1.00"/>
            <acceptor a_prob="0.999" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="5">
          <gDNA_exon_boundary g_start="78210" g_stop="78079" g_length="132"/>
          <reference_exon_boundary r_type="cDNA" r_start="621" r_stop="752" r_length="132" r_score="1.000"/>
        </exon>
        <intron i_serial="5">
          <gDNA_intron_boundary i_start="78078" i_stop="74341" i_length="3738">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="6">
          <gDNA_exon_boundary g_start="74340" g_stop="74192" g_length="149"/>
          <reference_exon_boundary r_type="cDNA" r_start="753" r_stop="901" r_length="149" r_score="1.000"/>
        </exon>
        <intron i_serial="6">
          <gDNA_intron_boundary i_start="74191" i_stop="74103" i_length="89">
            <donor d_prob="0.842" d_score="1.00"/>
            <acceptor a_prob="0.996" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="7">
          <gDNA_exon_boundary g_start="74102" g_stop="73961" g_length="142"/>
          <reference_exon_boundary r_type="cDNA" r_start="902" r_stop="1043" r_length="142" r_score="1.000"/>
        </exon>
        <intron i_serial="7">
          <gDNA_intron_boundary i_start="73960" i_stop="72691" i_length="1270">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="8">
          <gDNA_exon_boundary g_start="72690" g_stop="72605" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="1044" r_stop="1129" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="8">
          <gDNA_intron_boundary i_start="72604" i_stop="72457" i_length="148">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="9">
          <gDNA_exon_boundary g_start="72456" g_stop="72068" g_length="389"/>
          <reference_exon_boundary r_type="cDNA" r_start="1130" r_stop="1518" r_length="389" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0080C09.1" gen_strand="-" ref_id="SGN-U577772" ref_strand="+">
        <total_alignment_score>0.999</total_alignment_score>
        <cumulative_length_of_scored_exons>1518</cumulative_length_of_scored_exons>
        <coverage percentage="0.979" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0080C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U577772" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83621" e_stop="83317"/>
          <exon e_start="80475" e_stop="80379"/>
          <exon e_start="80290" e_stop="80208"/>
          <exon e_start="80081" e_stop="79947"/>
          <exon e_start="78210" e_stop="78079"/>
          <exon e_start="74340" e_stop="74192"/>
          <exon e_start="74102" e_stop="73961"/>
          <exon e_start="72690" e_stop="72605"/>
          <exon e_start="72456" e_stop="72068"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GGAAAAAAAAAAGAACAAAAAAAGTCGAAACCACGGGCAGCGCCGTATCAGTTCGGAGTCGGAGCCGGAGATCGGCCATGGCTGCCGCCGGTAATCCGTTATCCTCCGCTGTCACTTTCACAGAGCCGCCACCTGTTGCTCCTGGTACTGCTAATAAATCTTTGGATTTCTCTGCTGATTCAGTTCTACAGAGAATCGTACTGTCGCCTGATCAGCGTAGTCACTGTTTGGAAGCACTTAAAGCATTTAAGCAGAAAAGGTGTCACTCTCCGGACAAAATTGCCTCAGAGTTCTCCACTTTGCAGGTTTCCTTTTTCTTTTTTCCTGTTATTTTGTGGCTTTCGGCTATTCATTTGAAAACCTGTGTGGCAATATTTTGATGCTTAGTTTGAAGTTTACCGTAATGTTCTTGCAAAAAGGATACTAAGATATAGTATTATACTTGTACATTCAGCTGATATTAGCAGCATCTTAGTTTACTTGTATTAGTTACAGTTAGCTGTTAGCTTAACCAACAATTAGTTAGAGATATTTTTAGCCAGCTAGAGACACGGATATAAACACAACGTACAAAAATTGGAGCTCAGATTGAGCCCTAATTGTCCCTTGCTTTACATTTTAGAGCCTGTTTGGCTCAGCTTAAAAGCTGGTCAAACTACTTGCTGGTTTTTGACTTATTTAGCTGTTTGGCAATACTCAAAACAGCTTATTTTAAGTTAAAAAAAACTTATTTTAAGCCAAAAGTTAAAAGCTGGGGTAGGGGTGCTTTTTTATTTTTAGCTTATAAGCTGTTTTAAGTTGACCACATTTTTATCTTTTTGTGCTTAATATTTTTATACAATCTCCAAATTACCCATATAACCCTAACATTTCTTTCTTTCATTTATCCTTTTCACGTTTGACATAACAACTGCTTATTTTAAAAATAAGTTTCAGCACTTTTAAAAGTACTTTTTTAAAGCTGCTTTTATTAAGCCCATCCAAACGGGCCCTTAATATGGTGTCAGAGCTCTAGAGTATTTCCTTGAGCTGTTCTTCAATTGGCACACCTGGTGTTAATTTCTGTAGAAATAGAAGAAATTGAACTCTTGTATCTTCCAAATCAGCTGTTTTTGTCTTCAACTTTATCAATCATGTTATTCCTCATGGCTATGATCAGAATGAGCAATCCACTTTTAATCCAATTAGTCTCTTTACGTGCATTTTTCTGACTGTAGTAACCTTCCTTTTGATGGGATACGGTACAAATACTTTAGAAGAGGTTACTAGGATCTTTTTCCGTCAAGAATAAATTAGATCTTATCCTTGGAGACTGTGAAAGACCAGGTACGGAACCCCACAACTTGATCAGTTAAAGAGGTTCGATGATATGGTCAATTTGTGGATTTTGAATGCTCTTGCTAAAGAAGTTGCTGATAGTGTGGAATATGTCAAGGAGTCAGTTGAATTATGGAAGGAATCAGAAGATCACGATCAAACAAATGGTGCTAAGTTGTACCTAATTGAGAACGAGTTAATGACAGGACTCAAGGGTGCTTGATTACTAGCTATTACACAAAAATGAAGAAACTCTGGGAGGAATTGAACACCTTGAGTGCTAAAACACAAGATAGTTTTCAGTACACTTGTGATTCAAGGAAAATATGCATAAGGCAGAACAAGATAAGAGACTAACACAATTTCTCATGGGCTTCAATAGGTGTATATATTGAGAGGAAGCATACTTGTGATAAATTCACTGCTTCCGTAACACATGCTTTTTCCCTGCTGATTCAGGAGGAAAAACAAAAAGAGCTTCGGTCTAATAATAAGTTGGATGTACTAAGGAGTAAGGACAAGTGCTATAAACTGCATGGATATTCTCAAAATTCCAATCAAAGCCTAAAGGATTTCAATCAGAATTCTAAGATCAACAAGGGAAAAAGAACTGTGGCAAAATGTGCATTGTATACCAGTGGAAATGATATATGTTAAGGTAAAGGAACCTAACCATTAAGATGAGAATCAAAATGTCAGCTTCACTAAGTAGCAATATGGATAAATTGTTTATCTGTTACAACATTTTCAATTTGGCAATGCAGGAGAGAACTCAAACCACTTTATCTCACTACTGAAGTTGTGAACTTATCCGATATTATAGCTTGTTCAATTTCTATTGAATTTAAGAAAGTTCCATGTAAATGTTTCAAAACAAGGGCTGACTCATGAAATTTTAGATTCATGAGCCTCAAACCACATGACGTTCTACTCATTAGAACCCTATTATCAAACATTAGACTCAGTTTCTGTAGAAAAAATAGATGGCTGGCATCTCACCAACAGGGATGGAAAGAACTTCGGGCTTTACCTGGTATGTTACCAGACACATCCTGTTAAGGTTTCCCACTTTGGTAATCTTACCCAATTTTATTTTATTTATATTGTTAAGGTTCTCTCTTTTATGTTTATTTTAAAGAAAATTAGAACTTCACCATATGCTTTATTGGTCACCATTCCAAATGGTTATAAAGTGAAGGTGATAGAAATTGGAAATGTGACAATTGCACCCAACATCACTTTGCACAAAGTGCTGTTTGTGCCTCTCATATACATATTATTTTTATTCATTTCTGATGGTATCCTTAATGCGTTGTCTCATTTACTAACACTTAATGCCAACTGCATACCCCATCAATGAAGAGATCTTTGGAGATCGGTAAGGTTAAAAGACCTGTTTCTTTTTTTTTTTTTTGGGATTGCTTAAGAGTGATACTTATGTTTATGCAGTCAATTCTTGTACTTCCATTTTTTCTTGTGATATAAATAATATACAATATCATCCCCATATATGTCATCCTTATCCAATTATAAAATAGAAGTCCTGAAACCAAAAAAATTGGAATATTTTTGAGGTAAAACGGGGTGAATCACTTCTGAATTTCCTCGCCGAAGCAACTTTAATAGTTCTAGGTACAGAAAATGATAGCATAAATTACAAGATTTTTTTAAGGAAAAACATTCATCTATCTGATTTATATCAGCGATGTTCCCTTATAGATGAGAAGTTTTTAGTCTATTGTTGTTTTTTTACTCCCTGTTATTTCGTTTCCTCTGATGTTATTCTGCTTCATTTGATGCCATGCTAAATTTAAGCTCCTATGGTTCAGGAAAATAGGCTGAAAGCTTCAGAAATGAAGAGTAGATGCTTGGTGGCTTTGGACAGCACAAACATCAGCAAGAATCGTTATACTGATGTCATCCCATGTATGCTAATCAGTTGTCTGTTTGTTTTCTTTGATTTTATATTGCATTATTTTTTCGAAATAATTGGATCAAGCTTCATTGCTCTCAGTTGACAATAACAGGGTTGTTTTGGACCCATGTAAAGACTACAGACCGTCAGCTAAGGGATATATCAATGCAAGCTTTATAGAGGTGGATTCCTACATCCTTCACTTGGAATTATTTAAAAAGCCACTTCCCCTACTTGCTTAGCAAACAATATTGAGTTACAACGCAAAATCTGCTTCTGACCTTTTATACTGCTCTTTTTGATTGAAGATATCTGAAGGGGTGTCTCGGTTTGTTGCAACACAAGGTCCACTAGCACACACCTTTGAAGACTTCTGGGAAATGATAATCCAGCAACGCTGTCCTGTCATTGTGATGCTTACACGATTGGTTGACAATTACAAGGTATTCAATTGTTTAGACTAAGGTATACTTGCTTTGCAACCAAAATAAGTAAACATTTTATGACTATAGTCTGATCTATAATTTTCTTTATGGAAGAGAGAACCGACACTTTTACCTTTTTCAGTTTCTTCATTTGTAACCCCCTCCCACACACACACAGAAGTAGACCTGGCATTTTTATGCATTGAAGAAGTTGCAAATGAATCTTTGTTGGGTCTTGAACTTTTATCTTAAGATACAAAACCGAAGCCAGGAAGCCTGGCATGGAAAGGCTCAAGAAAAAAGTATCTTACAAATATACCTTTCATGCGTTCGCGCATAGAGCTTTGGTATAGCACTAAGGGCGCTACACGCTATGTTTGGGTTAGCGCTCGTCATGTGTTTGAACTTTGTTGCGGACAAAAGGTTGGAATTTAAGTGAGGAATAATAGAGGTTTGACCATTACTCAAGGAGTTTCGAACTATTTGCTCATGGACGTGGAAAATTTTCTGGTTATTATAAAAAGATGTTCCTTTTGTTCCTCCATCTTTGCTCCTAAACCTGCGATACTGAAAGGCTAATGTTGGTATTGCTAATTAGCATCCTCATTACTTCATGTGTTCTTTCCTCATTTCTTTTTTGGCTCCAGCGTCAAGCAGGGTGTCATGGGTTTAAGGTTTGTACTTTGCTAAATACTTGTGACTTGAACATATCTTGCTACTCTATACCTATTCTTCTTTCTTCAAATATGCATGAGCTTGAACTTAGATTGAATATTCTACGTGGATATTGAGTAATCTTATGGACATTGCGCATTGTCAAGTTTGTGATCTAGAGATGAAAATATAGATTGGAGGGAGCAATTGTTGCCAGAGGAACTAGCATATGCGGGTGTAGGATCAAATTAGTATTCAATCACAACAACAATAATAACGCCTCAGTCCCAAATAAATTAGGGATCGGCTATATGAATCACTGGCCATGTTTCCATTCTCATCTCAGGACAATATTATACAAATTAGAAATAGTAAAGTAAAATGTACTAAAAGTTCTATATATATTTTTCGTTTAGACTCATCTTGGACCAGTATTATGCAAAATAAAAATAGAAGTAAAATCTACTAGACGTTCTCTATATTTCAAATTATATATAGAATCAGAATTCAAGAAAAATGGTTAGAATTAGAGATTTATCTCTTTCAGCAAAGGAGTTCTATTCATTTTGTTGGGACATCATCTTTTTTGCATCTGTGTTTTGTCTTCTATTTTTCATATTAGATTTCAGGAGCCCCTCTTAGAAGCACACCGAAGCCTGAACAACTTTGTCTTATTCAAATAGAATAGTGTTGTCTCAGGATATTGTGGGCTAGGGCTTCTGAGTTGACGCTGGGTCATATGATCTTTGGAGGAATTAGAGTAGTCTGATGTAGAAAACCCTTTTTACCTTTCTGATATGGTTTGTGCCTCACATCTTGTCTCAATTGCATTTCCAATCTTTACCAGATAAATGGAAGCAATTAAAAGGTAGGAAGATGTGTTCTCGCTGCATGGTCGTTATCCTGAGTCTGTAATTTTTTGACCAGTATCGGAATTGCTATTCCCTACTTTAGTCAGTTTTCAGACTTGTTAACTCTCGAGTCTATTTTAGCATTTTGTTCTAGTGAGTTCCCACTTGAAATATAAGTGATTCCTGTTGACCTATATTCAGTATTAGCAGTTTTATATTTACCTTCTCGTTTGATGAAATCAAATGCAGATGGTGAAGTGTGGGGACTACTTTCAGGCAGAGGATGGGCCTAGAACATTTGGCAATATATGTATTGTGACAAAATATATGACGAGTGATGCCTCCTTAGTGTTGCGAACTCTGGAGGTGAACTATATTGAGGTTAGTAAATTCTTGTCAGCTCTTGTATGGTACAAGAAATAAACATGAATGAAAATATCTTATCTTGTCATTGACCGTTGAGTTTGGAACCAGCTTAAGAAATCTTTTAACCAATATCTGTGATGGAGGATGGTTGAATTTGACGGTTTCATACTTAATTTCTGCACTGTATGTATACACAGAGTTGGCTTGCATTGTATTACAACAATAGATTTTCAGTGTCCTGTTATAAGCTCCGTTCTATTAAATTTGATGTCCTGAAAAGAAACACCTGATTACCTTAGAAGGAATTTAGTTTTCATTTTTAATATAGATTTTCCGTGTTACTCTTGCACGCTGAATATGGTAGTTTTCATTGTTCACCATGTCTTGTTTCTACTGCTGCCTTACTTTCCGTAACTTACAGAACTTCTTTAAGTGATGCAATGTCCTCTGATCAGTCCAAATCCTTTCTTGTTGGCTATATCTCGAATCGGTCTTGACTTTGGATGGTTCCTTATCCTTGAAGCTGAGTATTATCAGTTTCTTTGTTGTGTTATATACCCAAGATTTGCTTTCTTTTTTCTTTTAACATTCTATTTTTTTTCAGAACTGTCATAAAATCATTGTTCTCAGGGGCTCTACTGAAGTAGATCCTATATCGTTAATTTCTGGGTTTTTCTTCCCCTATGGTTCCTCAAAGTTGATATATAGAACGAATTTTAATGAGAGACAATTAATTGATGCAGTTTCATCTAGGATTGCACTGATTATCTTCATAAAGTTATTTATTTTGGTTCACATCTCCTGATAAAAATGCTTGTACTGAATTTTAAATCTGGTTTAGCAAGAGTGGACTGCTGAATATTATCACGCCCCTTTGAAATAAACTGTGTCAATAAGTTGAACTTGAACAATTTGCAGAAATTTGGTGATTCTTGGGTAAAATCCATAATTCATTCGATAAGGGTAGACCTCATTATATTCTCGCGAACTTCTTTCAATACATGCAATCTTTTCAAAATCTCCATCGTACCTAAACTTGGCAGTTACTTCGTATTCTATTGAAGATTCTGCTTTGAATTCTGAATATCTGCTGTCATCAGGAGCTTATTTGTACCAAGTTCTATCTGTCTTTTCACTACATCCTCCATCAAATCTAAATATAAGATAATTCCATAAGAAATATATTCCTTCAAGTTCTCTATTGTTCATAAATAGTTTGCTTATCATTTTCTGTGCACTCTCTCTGTTCCACATTATATGACACTGTACTATTTGGAGAGTCAGACAGCTTTTCTTTAACCACCAACTCTTTCATGTGCTTTAATCTTATATTTTTAAATTATAAGGAGTTGTAATTTATAGTGCTTTCTATCTAGCTTAATTATTTAAAATCTTATTTTAGCAAGATTAAGAAGTAAGGTTGCCCCTCATACTTTGAGCCAACTCATCCTTTTTCAAATGGAGGGGGCAGTATCTATGAATTTTCTAACGTAAAGATCTTTATATCTTCTGGTATCCAGAGTATATTCAGTCCCTTCCTTCTTTTTAATACATCTCCATAATGCTATTTATCTTTTGCACTTATATTTTTTATATTTCTTATTATCTTTTGTGCTCTCTGGATAATGTACAATGATATGAAGTTACAAGTTAAATTTATAATAATGTACAATGATATGCTCCTACTTTCTCATTTCCTGTACGGCATTTTTCTTTTAGCCTATTTACATATTGATATTTTCTCTTTGTATCTTAATGTTGTCCTTGTTAACAGCTCTACCTTCTTTTACTTACCCCGATCTCGCAGATATTTCCTAATGATGACACCATATCCTCAATCCGGTTAGTTCTTAACAAATTAGTATTCACAATTTGTGAGGGTCGTTCTAGCTATATAAGAAATCCTTGACTAATAATAACATAATAAGATAAATAACTTACTTCAGAAATCAGTAATTGAATAAGTATTTGATCCATTGCATAACCATTTCAGTATTTAAGTTCAAGTAAACCATAGGATATATTCTTGCTGGTTTTCTAACAACTGGTTGATATTTATACCTAGTTTGCGTATCATTTTTTCATGATAAGGTAAAGTATATTATTGACAATTGTGGAAACCCCTATACAAGTAGTACACCAAAAAGGAAGAACCTACACCAAAATATGGTTCTCAAAAGAGACCCAATCCTCTCTACCATTAGGGTGCTTATCATTTTTTCTTAAATCAAATTTTCTTCTATCTGTATCTTCTATCTATATGTTTTCTAATACAAGGATCTTCATCATATCTTCTGTCATCAAGAGTATATTCATAGTGTCATACAGAGTCCTATCTATTTTCCATCAGTGTTGAGCCCATTGCAGATTTCAAAATCATTTTTAACACCTTTAAATCTGCCAATAAGATACCCTTCAAGGAGCTCTTTCCTTTTCTTAATTCTGCTCCCATCTACCTCAGTGGCAAAACTCTGTGATATCGCTGATGCTTCTTTGTTCATTTCTGGTCAACTATTTAACTGGGCTGCTTCAGCATAGAAATATGCTGAGAGGTCTAGTTAGTCTCTTAACCCTTGTCTGTGAATATCTTGTTATTAGCTAAGTCCTGGCACGATAATCACACTTCTTCAGACTCCCTGGTAACTTAGTGTACTCATATATTTCCATACCTGTTATAAGTTTTATGGCACTACATATTCATGTGCTTGTTCCTTCTCACTCAATTTCCTGTAGATCTCCACTGTTCTTTTGGATGCTAGCATAACCTTTGGCAGATCCATAATAGGATCTCTCTGCTGACCGTCAATCTCGACTAAGAATTTCCTTCTCTCGATCTATTCTTAACAGACTAACAGTATTCATACTCCGCAGTGGTTTCTATAATGTCAAGGCATTGATTCCTGGCTGTATAGAAGTCTCTCCCCATTAACTGTTTACGTGCTAAGTTTTCAGTCAATCAGTTTTCTAGCCACCATGCCTTAGGCGTAACTTACTGAGTGATCCCCAAATACAAAGTGCGATGAGAGAGAAAATCCTATTGCTTCTGGAATGTTGAGCTAATTGTGGATGCGGGAGTTCACCTTCAGAGTATCTGAAACTGGATCTTGTGGTTGAAGAGTGTTTCTCATATTAACATGAAGTTGGCTCTGTCCCAGCAGCACATGTAAACACGGAGCGTCTAAGGTCTGTGCAAGATAAGTTTTAGAAAAGCGCTAAGTAGTTTTAGGCTAAGTTGTGTGGACTCTTCACTTTCGATGCCGCACCTGTGTTGGATTCTCCAAAAATACTCTGCTTTTGGAGATTCTGACATGCACCCGTTGGCATTTTTGAAGAGTCCAAGCAACATAGGTTTAGGTGAATGTTTCCCTGGTCAATCCTGCATGTTAGATTAAGGTTATGATCTTTAATAATTATATCTTTATGCCTTTATATTTTACATATGTATATTAAGTACTAGTCAGTAGTGCTGGTGTGATTGCTTATACTCAACCACAACTACACCTCAGTCCCAAACAAATTGGGGTCGGCAAGGATTGCTTGTATTCAATCCCTTCAAATTTGATTTCTCTCTCCCTTGTAAGACCCAGCCCATTATCCCAATATTAGCTGGACCTGATGGGGTGACGTCGTTTTATTCCCCTATCTTCCAGCGCCAATAGTCATCTCTATTTAGACTCAACTTTGATAGATCTTTTGTTCTGTTATGTAGAAGCTAAAATACCCACCTGATCTGCTTCTCTTACTATGTGCCAGTCAGAAGAACCACCTTTGTGTGTTTTACACATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCCAGAGACACACTTGCTGTTCGTGAGATTCTGAAACGAACGTACAATTTGCCTCTTGGTCTTGGACCAATTGTAGTACACTGCAGGTTTCTCTGATCACTGACCCTGTAAATGTGCTTTTTGAATTCTGTTATTTAATTGTTTGTGTAGCTTGATGCCTCATTCTCTTGTACAGTGCTGGTATCGGTAGGACTGGAACATATTGCACAATCCATAATACCATCCAGAGAATACTGGGTGGAGATATGTCTGCTCTTGACATCGTTAATACAGTAGCCATTTTTAGGTCTCAGCGAATTGGGATGGTCCAGACCATGGTACAGCTCCTCCTTTTTTCTTTTTGTCCTTTTCAATTTTCCAATATGCTTCCTTTTTGGCTTTATTTTAACTACCTACTGCTGATTATAAGACTACCGGAGGAGCAATAGTTTCTGATTTTTAAAGTATAAACCACATCCAGCTTTTTTCTGAAAACTTTAGCTGATTGCTGGTATAGAGCATAGTGAGTTCATGTTAGTTAAACATATTGAAAGGGCTAAGCTATCGTTTTAAATCCTTCCGTATACCCTTAGAGTATCAGTGATGCTAAAGGCTTGCTTGAGGTGTGTTTTAAGTCCTGGAACTAGGTGAAGCTCAAGTTATATGCATTACGTCGTTTAGATGGAGCTTTGGTGCAATTACCAAGGGACCAAGACATGTGCCTGTCTTTGAGGGGTAGCACCATACAATTAAAAAGATGTTGGCAAAGTTAATCATGCATTAGTGATTAGGAATAAGACTAAAAGAATTAGTATAAGAAAATTCTTTGTTAGAAACTTAAAATGTATTTTACATTTAAATCGGAAATTCAAATTAGCTGCGGGACTTGATTGACATGATTTCTTCTGGGACTTGATTGACATAATTATAGTTCTGTGTTTTCAAGGTTTTTGTTCAAATAATTATTGCTTGTATTTTAGTTTTTTTTTCCCCATGAATTGCATATGTTTTTTTAAAAAACTTTTATTGATTTTCTTTGTTAAGCCACTTAAAGCCCCAACACACCTTGACACTTTTCTATGCGTTTCATTACTGGCAACTCGTGACTACAAGAATATTGGTCTTTTTTACTGCTCAGCCGTTGTAGAGGGAAAGGTCCATAAATCATACCTTCTGAGGACAAACATGTTCCATATTCTCAGCTAATCTTCTTCTAAAATTTTGAAGTATTCTTCACCCCGAATATCTGTATTACTTTTTATATTTAAGGGAACCACCCAGCTTCCAAACATGGATTCGGATGTCTGGATGGGATTTTATAAAAACATGAGAGATAACTGAACAATTAGGGAGGACCGGTATCTTACTCCCTACTGCTATATGAGTTGGACAGGTCCAACTCAGATACAAAATGCTCCTAATCGTCGCATTGCAACTACTTCTACACTCATCCTCCTTACAAGTGTAAAAGCGTAGTGTCTACTCTACAGTTAAGGGACTTTCCAGTATCACAAGGATAATTCTATTTAACCTATGTTCTCATTGATTATCTTTTATAGTTGCTTAGTTTTTTATCACGCCTAATATCTAAACTCTATTATGTTCCAGGATCAATACCTTTTCTGCTATGATGCCATTATTGATGAACTGGAAGACCTAATTTCAGATGACAATGGAGAGAAGAATCTGTAGTGGTAATTTTCACTTTGTTGTAAGTTCAATTGGTTGCTGCAGCAAGTAGAAGCACATGCATTGATTTTTCTCAACCTATATACTCTCTATATCTTGGTAGTCATGTCCGAAACAACAAACCCATCAATTTGTTGTCTTAACTTTTTACAGTAGCGATGAGTTAACAAGATCTTGGATTCTTGCTCACAATGGGATATGAAACAGTAGTTATGCTGAAGACACAAATCAGTTGGCTCTACTACAGTTGCTTCGTCTCGCTCTCTTTGCTTGGGATCCCAAGTTGTTCAAGAGATACCTGTTGCTATTTCCATCGACCTGAGAACTCATTTGGATCCACTATTTGAAATGCAAAGTGGAATGCCGATGTAAGATGTATCCTTTGGCTGACTGAATATAAATGAAGTTACAATGTTTGCAGATCCAGAAAATTATATTTCTGGTCATTATGGTTTTGCCGAGTAAACACGCTCATTCAACACTAAACTAAGTGAAACTGCTCACTTAATGATTATTTAGCATTGATGTGGATTTGAAATGGT</genome_strand>
        <mrna_strand>GGAAAAAAAAAAGAACAAAAAAAGTCGAAACCACGGGTAGCGCCGTATCAGTTCGGAGTCGGAGCCGGAGATCGGCCATGGCTTCCGCCGGTAATCCGTTATCCTCCGCTGTCACTTTCACAGAGCCGCCACCTGTTGCTCCTGGTACTGCTAATAAATCTTTGGATTTCTCTGCTGATTCAGTTCTACAGAGAATCGTACTGTCGCCTGATCAGCGTAGTCACTGTTTGGAAGCACTTAAAGCATTTAAGCAGAAAAGGTGTCACTCTCCGGACAAAATTGCCTCAGAGTTCTCCACTTTGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATAGGCTGAAAGCTTCAGAAATGAAGAGTAGATGCTTGGTGGCTTTGGACAGCACAAACATCAGCAAGAATCGTTATACTGATGTCATCCCAT........................................................................................TTGACAATAACAGGGTTGTTTTGGACCCATGTAAAGACTACAGACCGTCAGCTAAGGGATATATCAATGCAAGCTTTATAGAG..............................................................................................................................ATATCTGAAGGGGTGTCTCGGTTTGTTGCAACACAAGGTCCACTAGCACACACCTTTGAAGACTTCTGGGAAATGATAATCCAGCAACGCTGTCCTGTCATTGTGATGCTTACACGATTGGTTGACAATTACAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTGAAGTGTGGGGACTACTTTCAGGCAGAGGATGGGCCTAGAACATTTGGCAATATATGTATTGTGACAAAATATATGACGAGTGATGCCTCCTTAGTGTTGCGAACTCTGGAGGTGAACTATATTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAAGAACCACCTTTGTGTGTTTTACACATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCCAGAGACACACTTGCTGTTCGTGAGATTCTGAAACGAACGTACAATTTGCCTCTTGGTCTTGGACCAATTGTAGTACACTGCAG.........................................................................................TGCTGGTATCGGTAGGACTGGAACATATTGCACAATCCATAATACCATCCAGAGAATACTGGGTGGAGATATGTCTGCTCTTGACATCGTTAATACAGTAGCCATTTTTAGGTCTCAGCGAATTGGGATGGTCCAGACCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAATACCTTTTCTGCTATGATGCCATTATTGATGAACTGGAAGACCTAATTTCAGATGACAATGGAGAGAAGAATCTGTAGTG....................................................................................................................................................TAGCGATGAGTTAACAAGATCTTGGATTCTTGCTCACAATGGGATATGAAACAGTAGTTATGCTGAAGACACAAATCAGTTGGCTCTACTACAGTTGCTTCGTCTCGCTCTCTTTGCTTGGGATCCCAAGTTGTTCAAGAGATACCTGTTGCTATTTCCATCGACCTGAGAACTCATTTGGATCCACTATTTGAAATGCAAAGTGGAATGCCGATGTAAGATGTATCCTTTGGCTGACTGAATATAAATGAAGTTACAATGTTTGCAGATCCAGAAAATTATATTTCTGGTCATTATGGTTTTGCCGAGTAAACACGCTCATTCAACACTAAACTAAGTGAAACTGCTCACTTAATGATTATTTAGCATTGATGTGGATTTGAAATGGT</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U590631" ref_strand="+" ref_description="SGN-U590631 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|42572073|ref|NP_974127.1| (e_value=1e-22) protein tyrosine phosphatase 1 (PTP1) [Arabidopsis thaliana]; (*ATH) AT1G71860.2 (e_value=1e-24) | Symbol: None | protein tyrosine phosphatase 1 (PTP1), identical to protein tyrosine phosphatase 1 GI:3170531 from (Arabidopsis thaliana); contains Pfam profile: PF00102 protein-tyrosine phosphatase | chr1:27030391-27032735 FORWARD | Aliases: None; (*SWP) sp|Q24708|CSW_DROVI (e_value=6e-11) Tyrosine-protein phosphatase corkscrew (Fragment) OS=Drosophila virilis GN=csw; ">
      <seq>tctcagcctccttagtgttgcgaactctggaggtgaactatattgagtcagaagaaccacctttgtgtgttttacacattcagtatcctgaatggcctgaccatggagttcccagagacacacttgctgttcgtgagattctgaaacgaacgtacaatttgcctcttggtcttggaccaattgtagtacactgcaggtttctctgatcactgaccctgtaaatgtgctttttgaattctgttatttaattgtttgtgtagcttgatgcctcattctcttgtacagtgctggtatcggtaggactggaacatattgcacaatccataataccatccagagaatactgggtggagatatgtctgctcttgacatcgttaatacagtagccatttttaggtctcagcgaattgggatggtccagaccatggatcaataccttttctgctatgatgccattattgatgaactggaagacctaatttcagatgacaatggagagaagaatctgtagtgtagcgatgagttaacaagatcttggattcttgctcacaatgggatatgaaacagtagtta</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0080C09.1" temp_strand="-" temp_description="C00HBa0080C09.1  CU928194.8 htgs_phase:3 submitted_to_sgn_as:C00HBa0080C09 sequenced_by:sanger upload_account_name:uk">
        <position start="78424" stop="72097"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="78126" g_stop="78079" g_length="48"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="47" r_length="47" r_score="0.917"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="78078" i_stop="74341" i_length="3738">
            <donor d_prob="0.993" d_score="0.92"/>
            <acceptor a_prob="0.000" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="74340" g_stop="73961" g_length="380"/>
          <reference_exon_boundary r_type="cDNA" r_start="48" r_stop="427" r_length="380" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="73960" i_stop="72691" i_length="1270">
            <donor d_prob="0.992" d_score="1.00"/>
            <acceptor a_prob="0.917" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="72690" g_stop="72605" g_length="86"/>
          <reference_exon_boundary r_type="cDNA" r_start="428" r_stop="513" r_length="86" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="72604" i_stop="72457" i_length="148">
            <donor d_prob="0.792" d_score="1.00"/>
            <acceptor a_prob="0.648" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="72456" g_stop="72397" g_length="60"/>
          <reference_exon_boundary r_type="cDNA" r_start="514" r_stop="573" r_length="60" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0080C09.1" gen_strand="-" ref_id="SGN-U590631" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>574</cumulative_length_of_scored_exons>
        <coverage percentage="1.002" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0080C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U590631" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="78126" e_stop="78079"/>
          <exon e_start="74340" e_stop="73961"/>
          <exon e_start="72690" e_stop="72605"/>
          <exon e_start="72456" e_stop="72397"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>AGTGATGCCTCCTTAGTGTTGCGAACTCTGGAGGTGAACTATATTGAGGTTAGTAAATTCTTGTCAGCTCTTGTATGGTACAAGAAATAAACATGAATGAAAATATCTTATCTTGTCATTGACCGTTGAGTTTGGAACCAGCTTAAGAAATCTTTTAACCAATATCTGTGATGGAGGATGGTTGAATTTGACGGTTTCATACTTAATTTCTGCACTGTATGTATACACAGAGTTGGCTTGCATTGTATTACAACAATAGATTTTCAGTGTCCTGTTATAAGCTCCGTTCTATTAAATTTGATGTCCTGAAAAGAAACACCTGATTACCTTAGAAGGAATTTAGTTTTCATTTTTAATATAGATTTTCCGTGTTACTCTTGCACGCTGAATATGGTAGTTTTCATTGTTCACCATGTCTTGTTTCTACTGCTGCCTTACTTTCCGTAACTTACAGAACTTCTTTAAGTGATGCAATGTCCTCTGATCAGTCCAAATCCTTTCTTGTTGGCTATATCTCGAATCGGTCTTGACTTTGGATGGTTCCTTATCCTTGAAGCTGAGTATTATCAGTTTCTTTGTTGTGTTATATACCCAAGATTTGCTTTCTTTTTTCTTTTAACATTCTATTTTTTTTCAGAACTGTCATAAAATCATTGTTCTCAGGGGCTCTACTGAAGTAGATCCTATATCGTTAATTTCTGGGTTTTTCTTCCCCTATGGTTCCTCAAAGTTGATATATAGAACGAATTTTAATGAGAGACAATTAATTGATGCAGTTTCATCTAGGATTGCACTGATTATCTTCATAAAGTTATTTATTTTGGTTCACATCTCCTGATAAAAATGCTTGTACTGAATTTTAAATCTGGTTTAGCAAGAGTGGACTGCTGAATATTATCACGCCCCTTTGAAATAAACTGTGTCAATAAGTTGAACTTGAACAATTTGCAGAAATTTGGTGATTCTTGGGTAAAATCCATAATTCATTCGATAAGGGTAGACCTCATTATATTCTCGCGAACTTCTTTCAATACATGCAATCTTTTCAAAATCTCCATCGTACCTAAACTTGGCAGTTACTTCGTATTCTATTGAAGATTCTGCTTTGAATTCTGAATATCTGCTGTCATCAGGAGCTTATTTGTACCAAGTTCTATCTGTCTTTTCACTACATCCTCCATCAAATCTAAATATAAGATAATTCCATAAGAAATATATTCCTTCAAGTTCTCTATTGTTCATAAATAGTTTGCTTATCATTTTCTGTGCACTCTCTCTGTTCCACATTATATGACACTGTACTATTTGGAGAGTCAGACAGCTTTTCTTTAACCACCAACTCTTTCATGTGCTTTAATCTTATATTTTTAAATTATAAGGAGTTGTAATTTATAGTGCTTTCTATCTAGCTTAATTATTTAAAATCTTATTTTAGCAAGATTAAGAAGTAAGGTTGCCCCTCATACTTTGAGCCAACTCATCCTTTTTCAAATGGAGGGGGCAGTATCTATGAATTTTCTAACGTAAAGATCTTTATATCTTCTGGTATCCAGAGTATATTCAGTCCCTTCCTTCTTTTTAATACATCTCCATAATGCTATTTATCTTTTGCACTTATATTTTTTATATTTCTTATTATCTTTTGTGCTCTCTGGATAATGTACAATGATATGAAGTTACAAGTTAAATTTATAATAATGTACAATGATATGCTCCTACTTTCTCATTTCCTGTACGGCATTTTTCTTTTAGCCTATTTACATATTGATATTTTCTCTTTGTATCTTAATGTTGTCCTTGTTAACAGCTCTACCTTCTTTTACTTACCCCGATCTCGCAGATATTTCCTAATGATGACACCATATCCTCAATCCGGTTAGTTCTTAACAAATTAGTATTCACAATTTGTGAGGGTCGTTCTAGCTATATAAGAAATCCTTGACTAATAATAACATAATAAGATAAATAACTTACTTCAGAAATCAGTAATTGAATAAGTATTTGATCCATTGCATAACCATTTCAGTATTTAAGTTCAAGTAAACCATAGGATATATTCTTGCTGGTTTTCTAACAACTGGTTGATATTTATACCTAGTTTGCGTATCATTTTTTCATGATAAGGTAAAGTATATTATTGACAATTGTGGAAACCCCTATACAAGTAGTACACCAAAAAGGAAGAACCTACACCAAAATATGGTTCTCAAAAGAGACCCAATCCTCTCTACCATTAGGGTGCTTATCATTTTTTCTTAAATCAAATTTTCTTCTATCTGTATCTTCTATCTATATGTTTTCTAATACAAGGATCTTCATCATATCTTCTGTCATCAAGAGTATATTCATAGTGTCATACAGAGTCCTATCTATTTTCCATCAGTGTTGAGCCCATTGCAGATTTCAAAATCATTTTTAACACCTTTAAATCTGCCAATAAGATACCCTTCAAGGAGCTCTTTCCTTTTCTTAATTCTGCTCCCATCTACCTCAGTGGCAAAACTCTGTGATATCGCTGATGCTTCTTTGTTCATTTCTGGTCAACTATTTAACTGGGCTGCTTCAGCATAGAAATATGCTGAGAGGTCTAGTTAGTCTCTTAACCCTTGTCTGTGAATATCTTGTTATTAGCTAAGTCCTGGCACGATAATCACACTTCTTCAGACTCCCTGGTAACTTAGTGTACTCATATATTTCCATACCTGTTATAAGTTTTATGGCACTACATATTCATGTGCTTGTTCCTTCTCACTCAATTTCCTGTAGATCTCCACTGTTCTTTTGGATGCTAGCATAACCTTTGGCAGATCCATAATAGGATCTCTCTGCTGACCGTCAATCTCGACTAAGAATTTCCTTCTCTCGATCTATTCTTAACAGACTAACAGTATTCATACTCCGCAGTGGTTTCTATAATGTCAAGGCATTGATTCCTGGCTGTATAGAAGTCTCTCCCCATTAACTGTTTACGTGCTAAGTTTTCAGTCAATCAGTTTTCTAGCCACCATGCCTTAGGCGTAACTTACTGAGTGATCCCCAAATACAAAGTGCGATGAGAGAGAAAATCCTATTGCTTCTGGAATGTTGAGCTAATTGTGGATGCGGGAGTTCACCTTCAGAGTATCTGAAACTGGATCTTGTGGTTGAAGAGTGTTTCTCATATTAACATGAAGTTGGCTCTGTCCCAGCAGCACATGTAAACACGGAGCGTCTAAGGTCTGTGCAAGATAAGTTTTAGAAAAGCGCTAAGTAGTTTTAGGCTAAGTTGTGTGGACTCTTCACTTTCGATGCCGCACCTGTGTTGGATTCTCCAAAAATACTCTGCTTTTGGAGATTCTGACATGCACCCGTTGGCATTTTTGAAGAGTCCAAGCAACATAGGTTTAGGTGAATGTTTCCCTGGTCAATCCTGCATGTTAGATTAAGGTTATGATCTTTAATAATTATATCTTTATGCCTTTATATTTTACATATGTATATTAAGTACTAGTCAGTAGTGCTGGTGTGATTGCTTATACTCAACCACAACTACACCTCAGTCCCAAACAAATTGGGGTCGGCAAGGATTGCTTGTATTCAATCCCTTCAAATTTGATTTCTCTCTCCCTTGTAAGACCCAGCCCATTATCCCAATATTAGCTGGACCTGATGGGGTGACGTCGTTTTATTCCCCTATCTTCCAGCGCCAATAGTCATCTCTATTTAGACTCAACTTTGATAGATCTTTTGTTCTGTTATGTAGAAGCTAAAATACCCACCTGATCTGCTTCTCTTACTATGTGCCAGTCAGAAGAACCACCTTTGTGTGTTTTACACATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCCAGAGACACACTTGCTGTTCGTGAGATTCTGAAACGAACGTACAATTTGCCTCTTGGTCTTGGACCAATTGTAGTACACTGCAGGTTTCTCTGATCACTGACCCTGTAAATGTGCTTTTTGAATTCTGTTATTTAATTGTTTGTGTAGCTTGATGCCTCATTCTCTTGTACAGTGCTGGTATCGGTAGGACTGGAACATATTGCACAATCCATAATACCATCCAGAGAATACTGGGTGGAGATATGTCTGCTCTTGACATCGTTAATACAGTAGCCATTTTTAGGTCTCAGCGAATTGGGATGGTCCAGACCATGGTACAGCTCCTCCTTTTTTCTTTTTGTCCTTTTCAATTTTCCAATATGCTTCCTTTTTGGCTTTATTTTAACTACCTACTGCTGATTATAAGACTACCGGAGGAGCAATAGTTTCTGATTTTTAAAGTATAAACCACATCCAGCTTTTTTCTGAAAACTTTAGCTGATTGCTGGTATAGAGCATAGTGAGTTCATGTTAGTTAAACATATTGAAAGGGCTAAGCTATCGTTTTAAATCCTTCCGTATACCCTTAGAGTATCAGTGATGCTAAAGGCTTGCTTGAGGTGTGTTTTAAGTCCTGGAACTAGGTGAAGCTCAAGTTATATGCATTACGTCGTTTAGATGGAGCTTTGGTGCAATTACCAAGGGACCAAGACATGTGCCTGTCTTTGAGGGGTAGCACCATACAATTAAAAAGATGTTGGCAAAGTTAATCATGCATTAGTGATTAGGAATAAGACTAAAAGAATTAGTATAAGAAAATTCTTTGTTAGAAACTTAAAATGTATTTTACATTTAAATCGGAAATTCAAATTAGCTGCGGGACTTGATTGACATGATTTCTTCTGGGACTTGATTGACATAATTATAGTTCTGTGTTTTCAAGGTTTTTGTTCAAATAATTATTGCTTGTATTTTAGTTTTTTTTTCCCCATGAATTGCATATGTTTTTTTAAAAAACTTTTATTGATTTTCTTTGTTAAGCCACTTAAAGCCCCAACACACCTTGACACTTTTCTATGCGTTTCATTACTGGCAACTCGTGACTACAAGAATATTGGTCTTTTTTACTGCTCAGCCGTTGTAGAGGGAAAGGTCCATAAATCATACCTTCTGAGGACAAACATGTTCCATATTCTCAGCTAATCTTCTTCTAAAATTTTGAAGTATTCTTCACCCCGAATATCTGTATTACTTTTTATATTTAAGGGAACCACCCAGCTTCCAAACATGGATTCGGATGTCTGGATGGGATTTTATAAAAACATGAGAGATAACTGAACAATTAGGGAGGACCGGTATCTTACTCCCTACTGCTATATGAGTTGGACAGGTCCAACTCAGATACAAAATGCTCCTAATCGTCGCATTGCAACTACTTCTACACTCATCCTCCTTACAAGTGTAAAAGCGTAGTGTCTACTCTACAGTTAAGGGACTTTCCAGTATCACAAGGATAATTCTATTTAACCTATGTTCTCATTGATTATCTTTTATAGTTGCTTAGTTTTTTATCACGCCTAATATCTAAACTCTATTATGTTCCAGGATCAATACCTTTTCTGCTATGATGCCATTATTGATGAACTGGAAGACCTAATTTCAGATGACAATGGAGAGAAGAATCTGTAGTGGTAATTTTCACTTTGTTGTAAGTTCAATTGGTTGCTGCAGCAAGTAGAAGCACATGCATTGATTTTTCTCAACCTATATACTCTCTATATCTTGGTAGTCATGTCCGAAACAACAAACCCATCAATTTGTTGTCTTAACTTTTTACAGTAGCGATGAGTTAACAAGATCTTGGATTCTTGCTCACAATGGGATATGAAACAGTAGTTA</genome_strand>
        <mrna_strand>TCTCA-GCCTCCTTAGTGTTGCGAACTCTGGAGGTGAACTATATTGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAAGAACCACCTTTGTGTGTTTTACACATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCCAGAGACACACTTGCTGTTCGTGAGATTCTGAAACGAACGTACAATTTGCCTCTTGGTCTTGGACCAATTGTAGTACACTGCAGGTTTCTCTGATCACTGACCCTGTAAATGTGCTTTTTGAATTCTGTTATTTAATTGTTTGTGTAGCTTGATGCCTCATTCTCTTGTACAGTGCTGGTATCGGTAGGACTGGAACATATTGCACAATCCATAATACCATCCAGAGAATACTGGGTGGAGATATGTCTGCTCTTGACATCGTTAATACAGTAGCCATTTTTAGGTCTCAGCGAATTGGGATGGTCCAGACCATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAATACCTTTTCTGCTATGATGCCATTATTGATGAACTGGAAGACCTAATTTCAGATGACAATGGAGAGAAGAATCTGTAGTG....................................................................................................................................................TAGCGATGAGTTAACAAGATCTTGGATTCTTGCTCACAATGGGATATGAAACAGTAGTTA</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U591570" ref_strand="+" ref_description="SGN-U591570 Tomato 200607#2 [1 ESTs aligned] (*GB) gi|47558926|gb|AAT35563.1| (e_value=4e-46) protein tyrosine phosphatase; PTP [Phaseolus vulgaris]; (*ATH) AT1G71860.3 (e_value=1e-44)  Symbol: None | similar to protein tyrosine phosphatase; PTP [Phaseolus vulgaris] (GB:AAT35563.1); contains InterPro domain Protein tyrosine phosphatase, catalytic region (InterPro:IPR003595); contains InterPro domain Tyrosine specific protein phosph... ; (*SWP) sp|Q60673|PTPRN_MOUSE (e_value=7e-17) Receptor-type tyrosine-protein phosphatase-like N OS=Mus musculus GN=Ptprn; ">
      <seq>gtgaaccaaaaaggaaaaaaaaaagaacaaaaaaagtcgaaaccacgggcagcgccgtatcagttcggagtcggagccggagatcggccatggctgccgccggtaatccgttatcctccgctgtcactttcacagagccgccacctgttgctcctggtactgctaataaatctttggatttctctgctgattcagttctacagagaatcgtactgtcgcctgatcagcgtagtcactgtttggaagcacttaaagcatttaagcagaaaaggtgtcactctccggacaaaattgcctcagagttctccactttgcaggaaaataggctgaaagcttcagaaatgaagagtagatgcttggtggctttggacagcacaaacatcagcaagaatcgttatactgatgtcatcccatttgacaataacagggttgttttggacccatgtaaagactacagaccgtcagctaagggatatatcaatgcaagctttatagagatatctgaaggggtgtctcggtttgttgcaacacaaggtccactagcacacacctttgaagacttctgggaaatgataatccagcaacgctgtcctgtcattgtgatgcttacacgattggttgacaattacaagat</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0080C09.1" temp_strand="-" temp_description="C00HBa0080C09.1  CU928194.8 htgs_phase:3 submitted_to_sgn_as:C00HBa0080C09 sequenced_by:sanger upload_account_name:uk">
        <position start="83933" stop="79645"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="83633" g_stop="83317" g_length="317"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="317" r_length="317" r_score="1.000"/>
        </exon>
        <intron i_serial="1">
          <gDNA_intron_boundary i_start="83316" i_stop="80476" i_length="2841">
            <donor d_prob="0.993" d_score="1.00"/>
            <acceptor a_prob="0.944" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="2">
          <gDNA_exon_boundary g_start="80475" g_stop="80379" g_length="97"/>
          <reference_exon_boundary r_type="cDNA" r_start="318" r_stop="414" r_length="97" r_score="1.000"/>
        </exon>
        <intron i_serial="2">
          <gDNA_intron_boundary i_start="80378" i_stop="80291" i_length="88">
            <donor d_prob="0.994" d_score="1.00"/>
            <acceptor a_prob="0.936" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="3">
          <gDNA_exon_boundary g_start="80290" g_stop="80208" g_length="83"/>
          <reference_exon_boundary r_type="cDNA" r_start="415" r_stop="497" r_length="83" r_score="1.000"/>
        </exon>
        <intron i_serial="3">
          <gDNA_intron_boundary i_start="80207" i_stop="80082" i_length="126">
            <donor d_prob="0.846" d_score="1.00"/>
            <acceptor a_prob="0.995" a_score="1.00"/>
          </gDNA_intron_boundary>
        </intron>
        <exon e_serial="4">
          <gDNA_exon_boundary g_start="80081" g_stop="79947" g_length="135"/>
          <reference_exon_boundary r_type="cDNA" r_start="498" r_stop="632" r_length="135" r_score="1.000"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0080C09.1" gen_strand="-" ref_id="SGN-U591570" ref_strand="+">
        <total_alignment_score>1.000</total_alignment_score>
        <cumulative_length_of_scored_exons>632</cumulative_length_of_scored_exons>
        <coverage percentage="0.997" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0080C09.1" gen_strand="-"/>
        <rDNA rDNA_id="SGN-U591570" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="83633" e_stop="83317"/>
          <exon e_start="80475" e_stop="80379"/>
          <exon e_start="80290" e_stop="80208"/>
          <exon e_start="80081" e_stop="79947"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GTGAACCAAAAAGGAAAAAAAAAAGAACAAAAAAAGTCGAAACCACGGGCAGCGCCGTATCAGTTCGGAGTCGGAGCCGGAGATCGGCCATGGCTGCCGCCGGTAATCCGTTATCCTCCGCTGTCACTTTCACAGAGCCGCCACCTGTTGCTCCTGGTACTGCTAATAAATCTTTGGATTTCTCTGCTGATTCAGTTCTACAGAGAATCGTACTGTCGCCTGATCAGCGTAGTCACTGTTTGGAAGCACTTAAAGCATTTAAGCAGAAAAGGTGTCACTCTCCGGACAAAATTGCCTCAGAGTTCTCCACTTTGCAGGTTTCCTTTTTCTTTTTTCCTGTTATTTTGTGGCTTTCGGCTATTCATTTGAAAACCTGTGTGGCAATATTTTGATGCTTAGTTTGAAGTTTACCGTAATGTTCTTGCAAAAAGGATACTAAGATATAGTATTATACTTGTACATTCAGCTGATATTAGCAGCATCTTAGTTTACTTGTATTAGTTACAGTTAGCTGTTAGCTTAACCAACAATTAGTTAGAGATATTTTTAGCCAGCTAGAGACACGGATATAAACACAACGTACAAAAATTGGAGCTCAGATTGAGCCCTAATTGTCCCTTGCTTTACATTTTAGAGCCTGTTTGGCTCAGCTTAAAAGCTGGTCAAACTACTTGCTGGTTTTTGACTTATTTAGCTGTTTGGCAATACTCAAAACAGCTTATTTTAAGTTAAAAAAAACTTATTTTAAGCCAAAAGTTAAAAGCTGGGGTAGGGGTGCTTTTTTATTTTTAGCTTATAAGCTGTTTTAAGTTGACCACATTTTTATCTTTTTGTGCTTAATATTTTTATACAATCTCCAAATTACCCATATAACCCTAACATTTCTTTCTTTCATTTATCCTTTTCACGTTTGACATAACAACTGCTTATTTTAAAAATAAGTTTCAGCACTTTTAAAAGTACTTTTTTAAAGCTGCTTTTATTAAGCCCATCCAAACGGGCCCTTAATATGGTGTCAGAGCTCTAGAGTATTTCCTTGAGCTGTTCTTCAATTGGCACACCTGGTGTTAATTTCTGTAGAAATAGAAGAAATTGAACTCTTGTATCTTCCAAATCAGCTGTTTTTGTCTTCAACTTTATCAATCATGTTATTCCTCATGGCTATGATCAGAATGAGCAATCCACTTTTAATCCAATTAGTCTCTTTACGTGCATTTTTCTGACTGTAGTAACCTTCCTTTTGATGGGATACGGTACAAATACTTTAGAAGAGGTTACTAGGATCTTTTTCCGTCAAGAATAAATTAGATCTTATCCTTGGAGACTGTGAAAGACCAGGTACGGAACCCCACAACTTGATCAGTTAAAGAGGTTCGATGATATGGTCAATTTGTGGATTTTGAATGCTCTTGCTAAAGAAGTTGCTGATAGTGTGGAATATGTCAAGGAGTCAGTTGAATTATGGAAGGAATCAGAAGATCACGATCAAACAAATGGTGCTAAGTTGTACCTAATTGAGAACGAGTTAATGACAGGACTCAAGGGTGCTTGATTACTAGCTATTACACAAAAATGAAGAAACTCTGGGAGGAATTGAACACCTTGAGTGCTAAAACACAAGATAGTTTTCAGTACACTTGTGATTCAAGGAAAATATGCATAAGGCAGAACAAGATAAGAGACTAACACAATTTCTCATGGGCTTCAATAGGTGTATATATTGAGAGGAAGCATACTTGTGATAAATTCACTGCTTCCGTAACACATGCTTTTTCCCTGCTGATTCAGGAGGAAAAACAAAAAGAGCTTCGGTCTAATAATAAGTTGGATGTACTAAGGAGTAAGGACAAGTGCTATAAACTGCATGGATATTCTCAAAATTCCAATCAAAGCCTAAAGGATTTCAATCAGAATTCTAAGATCAACAAGGGAAAAAGAACTGTGGCAAAATGTGCATTGTATACCAGTGGAAATGATATATGTTAAGGTAAAGGAACCTAACCATTAAGATGAGAATCAAAATGTCAGCTTCACTAAGTAGCAATATGGATAAATTGTTTATCTGTTACAACATTTTCAATTTGGCAATGCAGGAGAGAACTCAAACCACTTTATCTCACTACTGAAGTTGTGAACTTATCCGATATTATAGCTTGTTCAATTTCTATTGAATTTAAGAAAGTTCCATGTAAATGTTTCAAAACAAGGGCTGACTCATGAAATTTTAGATTCATGAGCCTCAAACCACATGACGTTCTACTCATTAGAACCCTATTATCAAACATTAGACTCAGTTTCTGTAGAAAAAATAGATGGCTGGCATCTCACCAACAGGGATGGAAAGAACTTCGGGCTTTACCTGGTATGTTACCAGACACATCCTGTTAAGGTTTCCCACTTTGGTAATCTTACCCAATTTTATTTTATTTATATTGTTAAGGTTCTCTCTTTTATGTTTATTTTAAAGAAAATTAGAACTTCACCATATGCTTTATTGGTCACCATTCCAAATGGTTATAAAGTGAAGGTGATAGAAATTGGAAATGTGACAATTGCACCCAACATCACTTTGCACAAAGTGCTGTTTGTGCCTCTCATATACATATTATTTTTATTCATTTCTGATGGTATCCTTAATGCGTTGTCTCATTTACTAACACTTAATGCCAACTGCATACCCCATCAATGAAGAGATCTTTGGAGATCGGTAAGGTTAAAAGACCTGTTTCTTTTTTTTTTTTTTGGGATTGCTTAAGAGTGATACTTATGTTTATGCAGTCAATTCTTGTACTTCCATTTTTTCTTGTGATATAAATAATATACAATATCATCCCCATATATGTCATCCTTATCCAATTATAAAATAGAAGTCCTGAAACCAAAAAAATTGGAATATTTTTGAGGTAAAACGGGGTGAATCACTTCTGAATTTCCTCGCCGAAGCAACTTTAATAGTTCTAGGTACAGAAAATGATAGCATAAATTACAAGATTTTTTTAAGGAAAAACATTCATCTATCTGATTTATATCAGCGATGTTCCCTTATAGATGAGAAGTTTTTAGTCTATTGTTGTTTTTTTACTCCCTGTTATTTCGTTTCCTCTGATGTTATTCTGCTTCATTTGATGCCATGCTAAATTTAAGCTCCTATGGTTCAGGAAAATAGGCTGAAAGCTTCAGAAATGAAGAGTAGATGCTTGGTGGCTTTGGACAGCACAAACATCAGCAAGAATCGTTATACTGATGTCATCCCATGTATGCTAATCAGTTGTCTGTTTGTTTTCTTTGATTTTATATTGCATTATTTTTTCGAAATAATTGGATCAAGCTTCATTGCTCTCAGTTGACAATAACAGGGTTGTTTTGGACCCATGTAAAGACTACAGACCGTCAGCTAAGGGATATATCAATGCAAGCTTTATAGAGGTGGATTCCTACATCCTTCACTTGGAATTATTTAAAAAGCCACTTCCCCTACTTGCTTAGCAAACAATATTGAGTTACAACGCAAAATCTGCTTCTGACCTTTTATACTGCTCTTTTTGATTGAAGATATCTGAAGGGGTGTCTCGGTTTGTTGCAACACAAGGTCCACTAGCACACACCTTTGAAGACTTCTGGGAAATGATAATCCAGCAACGCTGTCCTGTCATTGTGATGCTTACACGATTGGTTGACAATTACAAG</genome_strand>
        <mrna_strand>GTGAACCAAAAAGGAAAAAAAAAAGAACAAAAAAAGTCGAAACCACGGGCAGCGCCGTATCAGTTCGGAGTCGGAGCCGGAGATCGGCCATGGCTGCCGCCGGTAATCCGTTATCCTCCGCTGTCACTTTCACAGAGCCGCCACCTGTTGCTCCTGGTACTGCTAATAAATCTTTGGATTTCTCTGCTGATTCAGTTCTACAGAGAATCGTACTGTCGCCTGATCAGCGTAGTCACTGTTTGGAAGCACTTAAAGCATTTAAGCAGAAAAGGTGTCACTCTCCGGACAAAATTGCCTCAGAGTTCTCCACTTTGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATAGGCTGAAAGCTTCAGAAATGAAGAGTAGATGCTTGGTGGCTTTGGACAGCACAAACATCAGCAAGAATCGTTATACTGATGTCATCCCAT........................................................................................TTGACAATAACAGGGTTGTTTTGGACCCATGTAAAGACTACAGACCGTCAGCTAAGGGATATATCAATGCAAGCTTTATAGAG..............................................................................................................................ATATCTGAAGGGGTGTCTCGGTTTGTTGCAACACAAGGTCCACTAGCACACACCTTTGAAGACTTCTGGGAAATGATAATCCAGCAACGCTGTCCTGTCATTGTGATGCTTACACGATTGGTTGACAATTACAAG</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
  <spliced_alignment xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
    <reference ref_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/gth_cdna_fileCXGN::TomatoGenome::BACSubmission::Analysis::GenomeThreader::SGN_U_tomato" ref_id="SGN-U567689" ref_strand="+" ref_description="SGN-U567689 Tomato 200607#2 [5 ESTs aligned] ">
      <seq>gaaaatccatgttgagagcaaagtgaggtatttcatagactatacaagaaaatagtgtgtgaagaataatagaatgtgagcgatattttagtaagacggaaatcaaaagagtgttgttccttttgagtgtgtagtattcactttgagtattgtattcgtgactacacaatgtaaaattccttattatagtaatatcagttgctcctctcggctcgtgattttttcccttattcagaagggtttccacgtaaaattcttggtgtcgttattttcctattttatttccattatttttatcatatatatttttgtgctcgtctgcgttttcccaacagacacctcattcatttatctattttcttttcttttgtt</seq>
    </reference>
    <gDNA_segment>
      <template temp_file="/tmp/bac-submission-temp-C00HBa0080C09-Z7MX7/GenomeThreader_SGN_U_tomato/un_xed_seqs" temp_id="C00HBa0080C09.1" temp_strand="+" temp_description="C00HBa0080C09.1  CU928194.8 htgs_phase:3 submitted_to_sgn_as:C00HBa0080C09 sequenced_by:sanger upload_account_name:uk">
        <position start="113447" stop="114392"/>
      </template>
    </gDNA_segment>
    <predicted_gene_structure xmlns="http://www.genomethreader.org/GTH_output/alignment_module/spliced_alignment/">
      <exon-intron_info>
        <exon e_serial="1">
          <gDNA_exon_boundary g_start="113747" g_stop="114087" g_length="341"/>
          <reference_exon_boundary r_type="cDNA" r_start="1" r_stop="342" r_length="342" r_score="0.903"/>
        </exon>
      </exon-intron_info>
      <MATCH_line gen_id="C00HBa0080C09.1" gen_strand="+" ref_id="SGN-U567689" ref_strand="+">
        <total_alignment_score>0.903</total_alignment_score>
        <cumulative_length_of_scored_exons>341</cumulative_length_of_scored_exons>
        <coverage percentage="0.917" high_type="C"/>
      </MATCH_line>
      <PGS_line>
        <gDNA gen_id="C00HBa0080C09.1" gen_strand="+"/>
        <rDNA rDNA_id="SGN-U567689" rDNA_strand="+"/>
        <gDNA_exon_coordinates>
          <exon e_start="113747" e_stop="114087"/>
        </gDNA_exon_coordinates>
      </PGS_line>
      <alignment>
        <genome_strand>GAAAAACCATTTTGAGAGCAAAGTGAGGTATTCCATAGACTATAGAAGAAAATAGTCTGTGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGACGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTACTGTATACGTGACTACATAGTAT-AAATTCCTTACTATAGTAATGTCAGTTGCTCCTCTTGGCTCGTGATTTTTTCCCTTATTCAGAAGGATTTCCACATAAAATTCTTGGTGTCGTTATTTTCCTATTTTATTTACATTACTTTTACCATATTTACTTTTGTGTTTGTCAGCATTTTCCCAACACACCCTTC</genome_strand>
        <mrna_strand>GAAAATCCATGTTGAGAGCAAAGTGAGGTATTTCATAGACTATACAAGAAAATAGTGTGTGAAGAATAATAGAATGTGAGCGATATTTTAGTAAGACGGAAATCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTATTCACTTTGAGTATTGTATTCGTGACTACACAATGTAAAATTCCTTATTATAGTAATATCAGTTGCTCCTCTCGGCTCGTGATTTTTTCCCTTATTCAGAAGGGTTTCCACGTAAAATTCTTGGTGTCGTTATTTTCCTATTTTATTTCCATTATTTTTATCATATATATTTTTGTGCTCGTCTGCGTTTTCCCAACAGACACCTC</mrna_strand>
      </alignment>
    </predicted_gene_structure>
  </spliced_alignment>
    <total_number_ESTs_reported>8</total_number_ESTs_reported>
    </alignment_module>
  <PGL_module xmlns="http://www.genomethreader.org/GTH_output/PGL_module/">
    <predicted_gene_location>
      <PGL_line PGL_serial="1" PGL_strand="-" PGL_start="18524" PGL_stop="17802"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="18524" e_stop="17802"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.994"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.994">
            <gDNA_exon_boundary e_start="18524" e_stop="17802" e_length="723"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="18524" stop="17802"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U600755" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="1" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTCCGAAATGAACAGGAAATCTTCAAGCCAGGTTGATCTTCTTCGAATTGAGACACTGTATCATGCAGATAAGGAGAAAACAGAAGCATATATTCTTGAATTAGTGGTGTGGCTCCATTATCTTGTCAGTCAGTCGAAACGTGCTAATGCTGGAGTGAGATCTCCAGTAAAATCTCCAATCTGTTCCCCTAATCAAAAGACGATTGAGTTGTCTAATCACCAATCAAGCTCTCCATCATCCCCATTATCGGTTGAAGACCAAGAAATGCTCCGCGATGTAAGCAAGAGAAAACTCACTCCAGGGATTAGCAAGTCTCAAGAATTTGCAAAAACAGGGTTGAGCAAGTACAACAGGCTGAGTAAGAGCAATAGCCATTCACCTATAAATGAAACCAGAAAGAACCCGTTCCCTATCAAGAGACCGTCTTCTGTTCCAGTGTTTGACTTTGACACTGATCGCTTGAAAGCTTTGGATGTCATCGACAGGGTGGACACAGTTAGAGGTGCATAATTGGTACAACACTAGGCTGCATTGCCATGTTCATAGTGTGATAGTATGTTTATTTACTGCATTGGCAAAACGTAAATAGAGAGCACAAGTTTTAGTTAGCTGTACATTGGCTATATTATGATGGCCTACAAATGCTTCCCTTGTGTTATGTCCTGTTTGTGTCTGGGAACTGGATTGTCCCTAACGCGAACTAGATCAGATATCTGTTTGCA</gDNA_template>
            <first_frame> V  R  N  E  Q  E  I  F  K  P  G  *  S  S  S  N  *  D  T  V  S  C  R  *  G  E  N  R  S  I  Y  S  *  I  S  G  V  A  P  L  S  C  Q  S  V  E  T  C  *  C  W  S  E  I  S  S  K  I  S  N  L  F  P  *  S  K  D  D  *  V  V  *  S  P  I  K  L  S  I  I  P  I  I  G  *  R  P  R  N  A  P  R  C  K  Q  E  K  T  H  S  R  D  *  Q  V  S  R  I  C  K  N  R  V  E  Q  V  Q  Q  A  E  *  E  Q  *  P  F  T  Y  K  *  N  Q  K  E  P  V  P  Y  Q  E  T  V  F  C  S  S  V  *  L  *  H  *  S  L  E  S  F  G  C  H  R  Q  G  G  H  S  *  R  C  I  I  G  T  T  L  G  C  I  A  M  F  I  V  *  *  Y  V  Y  L  L  H  W  Q  N  V  N  R  E  H  K  F  *  L  A  V  H  W  L  Y  Y  D  G  L  Q  M  L  P  L  C  Y  V  L  F  V  S  G  N  W  I  V  P  N  A  N  *  I  R  Y  L  F  A </first_frame>
            <second_frame>  S  E  M  N  R  K  S  S  S  Q  V  D  L  L  R  I  E  T  L  Y  H  A  D  K  E  K  T  E  A  Y  I  L  E  L  V  V  W  L  H  Y  L  V  S  Q  S  K  R  A  N  A  G  V  R  S  P  V  K  S  P  I  C  S  P  N  Q  K  T  I  E  L  S  N  H  Q  S  S  S  P  S  S  P  L  S  V  E  D  Q  E  M  L  R  D  V  S  K  R  K  L  T  P  G  I  S  K  S  Q  E  F  A  K  T  G  L  S  K  Y  N  R  L  S  K  S  N  S  H  S  P  I  N  E  T  R  K  N  P  F  P  I  K  R  P  S  S  V  P  V  F  D  F  D  T  D  R  L  K  A  L  D  V  I  D  R  V  D  T  V  R  G  A  *  L  V  Q  H  *  A  A  L  P  C  S  *  C  D  S  M  F  I  Y  C  I  G  K  T  *  I  E  S  T  S  F  S  *  L  Y  I  G  Y  I  M  M  A  Y  K  C  F  P  C  V  M  S  C  L  C  L  G  T  G  L  S  L  T  R  T  R  S  D  I  C  L   </second_frame>
            <third_frame>   P  K  *  T  G  N  L  Q  A  R  L  I  F  F  E  L  R  H  C  I  M  Q  I  R  R  K  Q  K  H  I  F  L  N  *  W  C  G  S  I  I  L  S  V  S  R  N  V  L  M  L  E  *  D  L  Q  *  N  L  Q  S  V  P  L  I  K  R  R  L  S  C  L  I  T  N  Q  A  L  H  H  P  H  Y  R  L  K  T  K  K  C  S  A  M  *  A  R  E  N  S  L  Q  G  L  A  S  L  K  N  L  Q  K  Q  G  *  A  S  T  T  G  *  V  R  A  I  A  I  H  L  *  M  K  P  E  R  T  R  S  L  S  R  D  R  L  L  F  Q  C  L  T  L  T  L  I  A  *  K  L  W  M  S  S  T  G  W  T  Q  L  E  V  H  N  W  Y  N  T  R  L  H  C  H  V  H  S  V  I  V  C  L  F  T  A  L  A  K  R  K  *  R  A  Q  V  L  V  S  C  T  L  A  I  L  *  W  P  T  N  A  S  L  V  L  C  P  V  C  V  W  E  L  D  C  P  *  R  E  L  D  Q  I  S  V  C  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0080C09.1" strand="-"/>
                <serials PGL_serial="1" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="18523" stop="18014"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>507</number_coding_nucleotides>
                  <number_encoded_amino_acids>169</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SEMNRKSSSQVDLLRIETLYHADKEKTEAYILELVVWLHYLVSQSKRANAGVRSPVKSPICSPNQKTIELSNHQSSSPSSPLSVEDQEMLRDVSKRKLTPGISKSQEFAKTGLSKYNRLSKSNSHSPINETRKNPFPIKRPSSVPVFDFDTDRLKALDVIDRVDTVRGA*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="2" PGL_strand="-" PGL_start="31894" PGL_stop="25339"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="31894" e_stop="31696"/>
            <exon e_start="31166" e_stop="30777"/>
            <exon e_start="28282" e_stop="27957"/>
            <exon e_start="27865" e_stop="27773"/>
            <exon e_start="27676" e_stop="27586"/>
            <exon e_start="25566" e_stop="25339"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.833" acc_prob="0.000" e_score="0.995"/>
          <exon-intron don_prob="0.993" acc_prob="0.978" e_score="0.997"/>
          <exon-intron don_prob="0.956" acc_prob="0.989" e_score="1.000"/>
          <exon-intron don_prob="0.799" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.999" acc_prob="0.839" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.995">
            <gDNA_exon_boundary e_start="31894" e_stop="31696" e_length="199"/>
          </exon>
          <intron i_serial="1" don_prob="0.833" acc_prob="0.000">
            <gDNA_intron_boundary i_start="31695" i_stop="31167" i_length="529"/>
          </intron>
          <exon e_serial="2" e_score="0.997">
            <gDNA_exon_boundary e_start="31166" e_stop="30777" e_length="390"/>
          </exon>
          <intron i_serial="2" don_prob="0.993" acc_prob="0.978">
            <gDNA_intron_boundary i_start="30776" i_stop="28283" i_length="2494"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="28282" e_stop="27957" e_length="326"/>
          </exon>
          <intron i_serial="3" don_prob="0.956" acc_prob="0.989">
            <gDNA_intron_boundary i_start="27956" i_stop="27866" i_length="91"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="27865" e_stop="27773" e_length="93"/>
          </exon>
          <intron i_serial="4" don_prob="0.799" acc_prob="0.995">
            <gDNA_intron_boundary i_start="27772" i_stop="27677" i_length="96"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="27676" e_stop="27586" e_length="91"/>
          </exon>
          <intron i_serial="5" don_prob="0.999" acc_prob="0.839">
            <gDNA_intron_boundary i_start="27585" i_stop="25567" i_length="2019"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="25566" e_stop="25339" e_length="228"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="31894" stop="31696"/>
              <exon start="31166" stop="30777"/>
              <exon start="28282" stop="28051"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U564898" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="28187" stop="27957"/>
              <exon start="27865" stop="27773"/>
              <exon start="27676" stop="27586"/>
              <exon start="25566" stop="25339"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U594817" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="2" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AAGTAAGAAGAACACTTTCTTTGGGTCTGAGACTGACCTTGGTCTTCCCGTTTACTCCTCACCCTGCACCGCTTCATACGCTCCAAAAATGCTAAAACAAAACACCCATTGAAGCAAAATCCCTTTTTCTTGATTTTGTGTTAAAGAAAAAGAGTTGCAGAATCCCAAGTTTTCATCTTTACTAGTTTTCTCTTGTTGG : TGGTAGGTTGTCAAGGAGGTTTCACAGAGTGTAGCTTGGGATTGAAATAGGTGGAAGGTCATTATCCAGAAGATGGGTGGTCTTTGTTCTAGAAGGGCTAACGCTGATAGCACAACGGATCATGGCATTCCACATGGGAATGGTCATCTTAGTTATGGTGCTGGAACTGTTTATCAGTCGCGTGGATTGCCCATACAACTAAGCAGTGATCCTATGCCCCCTGCTGGGGAAAGCCAGCAGCTAACTGAACCAACATTATCTTATCCGGAGATGAATGATATTTCTCTTGGGATTCCTATGGATGATGTTGATGATGGAATTCCAATATTGTCAAGGGTTTTATCCAACAAGTCCATATCAGCAAGGTCAAAGCAAGTTGCAATTGCAAAG : GTTTCCGAAATGAGTTCACTGTTGGGAAGAGCAGGTACAGCGGGGCTTGGGAAGGCTGTAAATGTGTTGGACACACTGGGTAGCAGCATGACAAACTTAAACTTAAGTAGCGGTTTTGTGTCAAACATGGCAACCAAGGGAAATAAAATTTCAATTTTGGCATTTGAAGTTGCAAATACCATTGTCAAGGCTGCCAATCTTATTCATTCTCTTTCAGAAGAAAATGTGAAACATTTGAAGGAGGTGGTGCTTCTTTCAGAAGGTGTGCAGCTCCTGATAACAAAGGATATGGATGAACTCTTGAGAATTGCTGCAGCAGACAAGAG : GGATGAACTGAAAATATTCTCCGGTGAAGTGGTTCGTTTTGGAAATCGCTGTAAAGATCCTCAATGGCACAACTTGGAACGTTACTTTGAAAA : GCTGGAATCTGAACTGACACCTCATGAGCACTTGAAAGAAGAAGCAGAGGCTCTAATGGTGCAGTTGATGATCTCGGTTCAGTATACAGCT : GAACTGTACCATGAATTCCATGCTTTGGACAGATTTGAGCAAGATTATCGACGTAAAGTTCAAGAAGAGGATACTTCAAGTGCTACTCAGAGAGGTATTCCATAACGACAGTTATGTTTTGTTATTTGTGATTCTTTTAAGCAGATTGAAGCTCAAATTTCCCGTAGATGAAATTTGAACTTAAGTTGCTCCAATGTGTTCATCATATTATATTGTTTATGAACATGA</gDNA_template>
            <first_frame> K  *  E  E  H  F  L  W  V  *  D  *  P  W  S  S  R  L  L  L  T  L  H  R  F  I  R  S  K  N  A  K  T  K  H  P  L  K  Q  N  P  F  F  L  I  L  C  *  R  K  R  V  A  E  S  Q  V  F  I  F  T  S  F  L  L  L   : V  V  G  C  Q  G  G  F  T  E  C  S  L  G  L  K  *  V  E  G  H  Y  P  E  D  G  W  S  L  F  *  K  G  *  R  *  *  H  N  G  S  W  H  S  T  W  E  W  S  S  *  L  W  C  W  N  C  L  S  V  A  W  I  A  H  T  T  K  Q  *  S  Y  A  P  C  W  G  K  P  A  A  N  *  T  N  I  I  L  S  G  D  E  *  Y  F  S  W  D  S  Y  G  *  C  *  *  W  N  S  N  I  V  K  G  F  I  Q  Q  V  H  I  S  K  V  K  A  S  C  N  C  K   : G  F  R  N  E  F  T  V  G  K  S  R  Y  S  G  A  W  E  G  C  K  C  V  G  H  T  G  *  Q  H  D  K  L  K  L  K  *  R  F  C  V  K  H  G  N  Q  G  K  *  N  F  N  F  G  I  *  S  C  K  Y  H  C  Q  G  C  Q  S  Y  S  F  S  F  R  R  K  C  E  T  F  E  G  G  G  A  S  F  R  R  C  A  A  P  D  N  K  G  Y  G  *  T  L  E  N  C  C  S  R  Q  E  :  G  *  T  E  N  I  L  R  *  S  G  S  F  W  K  S  L  *  R  S  S  M  A  Q  L  G  T  L  L  *  K  :  A  G  I  *  T  D  T  S  *  A  L  E  R  R  S  R  G  S  N  G  A  V  D  D  L  G  S  V  Y  S   : *  T  V  P  *  I  P  C  F  G  Q  I  *  A  R  L  S  T  *  S  S  R  R  G  Y  F  K  C  Y  S  E  R  Y  S  I  T  T  V  M  F  C  Y  L  *  F  F  *  A  D  *  S  S  N  F  P  *  M  K  F  E  L  K  L  L  Q  C  V  H  H  I  I  L  F  M  N  M  </first_frame>
            <second_frame>  S  K  K  N  T  F  F  G  S  E  T  D  L  G  L  P  V  Y  S  S  P  C  T  A  S  Y  A  P  K  M  L  K  Q  N  T  H  *  S  K  I  P  F  S  *  F  C  V  K  E  K  E  L  Q  N  P  K  F  S  S  L  L  V  F  S  C  W  :  W  *  V  V  K  E  V  S  Q  S  V  A  W  D  *  N  R  W  K  V  I  I  Q  K  M  G  G  L  C  S  R  R  A  N  A  D  S  T  T  D  H  G  I  P  H  G  N  G  H  L  S  Y  G  A  G  T  V  Y  Q  S  R  G  L  P  I  Q  L  S  S  D  P  M  P  P  A  G  E  S  Q  Q  L  T  E  P  T  L  S  Y  P  E  M  N  D  I  S  L  G  I  P  M  D  D  V  D  D  G  I  P  I  L  S  R  V  L  S  N  K  S  I  S  A  R  S  K  Q  V  A  I  A  K  :  V  S  E  M  S  S  L  L  G  R  A  G  T  A  G  L  G  K  A  V  N  V  L  D  T  L  G  S  S  M  T  N  L  N  L  S  S  G  F  V  S  N  M  A  T  K  G  N  K  I  S  I  L  A  F  E  V  A  N  T  I  V  K  A  A  N  L  I  H  S  L  S  E  E  N  V  K  H  L  K  E  V  V  L  L  S  E  G  V  Q  L  L  I  T  K  D  M  D  E  L  L  R  I  A  A  A  D  K  R :   D  E  L  K  I  F  S  G  E  V  V  R  F  G  N  R  C  K  D  P  Q  W  H  N  L  E  R  Y  F  E  K :   L  E  S  E  L  T  P  H  E  H  L  K  E  E  A  E  A  L  M  V  Q  L  M  I  S  V  Q  Y  T  A  :  E  L  Y  H  E  F  H  A  L  D  R  F  E  Q  D  Y  R  R  K  V  Q  E  E  D  T  S  S  A  T  Q  R  G  I  P  *  R  Q  L  C  F  V  I  C  D  S  F  K  Q  I  E  A  Q  I  S  R  R  *  N  L  N  L  S  C  S  N  V  F  I  I  L  Y  C  L  *  T  * </second_frame>
            <third_frame>   V  R  R  T  L  S  L  G  L  R  L  T  L  V  F  P  F  T  P  H  P  A  P  L  H  T  L  Q  K  C  *  N  K  T  P  I  E  A  K  S  L  F  L  D  F  V  L  K  K  K  S  C  R  I  P  S  F  H  L  Y  *  F  S  L  V  G :   G  R  L  S  R  R  F  H  R  V  *  L  G  I  E  I  G  G  R  S  L  S  R  R  W  V  V  F  V  L  E  G  L  T  L  I  A  Q  R  I  M  A  F  H  M  G  M  V  I  L  V  M  V  L  E  L  F  I  S  R  V  D  C  P  Y  N  *  A  V  I  L  C  P  L  L  G  K  A  S  S  *  L  N  Q  H  Y  L  I  R  R  *  M  I  F  L  L  G  F  L  W  M  M  L  M  M  E  F  Q  Y  C  Q  G  F  Y  P  T  S  P  Y  Q  Q  G  Q  S  K  L  Q  L  Q  R :   F  P  K  *  V  H  C  W  E  E  Q  V  Q  R  G  L  G  R  L  *  M  C  W  T  H  W  V  A  A  *  Q  T  *  T  *  V  A  V  L  C  Q  T  W  Q  P  R  E  I  K  F  Q  F  W  H  L  K  L  Q  I  P  L  S  R  L  P  I  L  F  I  L  F  Q  K  K  M  *  N  I  *  R  R  W  C  F  F  Q  K  V  C  S  S  *  *  Q  R  I  W  M  N  S  *  E  L  L  Q  Q  T  R   : G  M  N  *  K  Y  S  P  V  K  W  F  V  L  E  I  A  V  K  I  L  N  G  T  T  W  N  V  T  L  K   : S  W  N  L  N  *  H  L  M  S  T  *  K  K  K  Q  R  L  *  W  C  S  *  *  S  R  F  S  I  Q  L :   N  C  T  M  N  S  M  L  W  T  D  L  S  K  I  I  D  V  K  F  K  K  R  I  L  Q  V  L  L  R  E  V  F  H  N  D  S  Y  V  L  L  F  V  I  L  L  S  R  L  K  L  K  F  P  V  D  E  I  *  T  *  V  A  P  M  C  S  S  Y  Y  I  V  Y  E  H   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0080C09.1" strand="-"/>
                <serials PGL_serial="2" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="31121" stop="30777"/>
                    <exon start="28282" stop="27957"/>
                    <exon start="27865" stop="27773"/>
                    <exon start="27676" stop="27586"/>
                    <exon start="25566" stop="25462"/>
                  </exon_boundaries>
                  <frame>1</frame>
                  <number_coding_nucleotides>957</number_coding_nucleotides>
                  <number_encoded_amino_acids>319</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>NRWKVIIQKMGGLCSRRANADSTTDHGIPHGNGHLSYGAGTVYQSRGLPIQLSSDPMPPAGESQQLTEPTLSYPEMNDISLGIPMDDVDDGIPILSRVLSNKSISARSKQVAIAKVSEMSSLLGRAGTAGLGKAVNVLDTLGSSMTNLNLSSGFVSNMATKGNKISILAFEVANTIVKAANLIHSLSEENVKHLKEVVLLSEGVQLLITKDMDELLRIAAADKRDELKIFSGEVVRFGNRCKDPQWHNLERYFEKLESELTPHEHLKEEAEALMVQLMISVQYTAELYHEFHALDRFEQDYRRKVQEEDTSSATQRGIP*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="3" PGL_strand="-" PGL_start="69892" PGL_stop="69515"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="69892" e_stop="69515"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.976"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.976">
            <gDNA_exon_boundary e_start="69892" e_stop="69515" e_length="378"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="69892" stop="69515"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U598139" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="3" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGGGTTTTATCTCTCTAAAAAGTTCCAAGAGCTGCGCAGCAACTAAGTTAAGAATTCTCTGATCTCCTTCACCTTTCACCGGTCACTTTGAGGTAAGAAATCGATTTCTCCGGTCTCCTTCTCCTTTCGATTGCTCCCGTCTTAAGTGAACGGTGAAATTGCTCCTGTTTTCTTCATCCTCAGGTGAAAGGTGAACTTCTACCTTTGGTAATTTCTCTTTTTTCATATGTTCGGTGAGCTTCTAGTCCGGTGAAGAGGAGGGTTTTGACTTCTATTTGGTGAAAATAATTGGAAAAATGGGATGGGGTTATCAGGGAAGAGCAGTAGTCTTCTTTAAATTTTATTGGATACATGATGTTAGTCATATTGATAAACCAC</gDNA_template>
            <first_frame> R  V  L  S  L  *  K  V  P  R  A  A  Q  Q  L  S  *  E  F  S  D  L  L  H  L  S  P  V  T  L  R  *  E  I  D  F  S  G  L  L  L  L  S  I  A  P  V  L  S  E  R  *  N  C  S  C  F  L  H  P  Q  V  K  G  E  L  L  P  L  V  I  S  L  F  S  Y  V  R  *  A  S  S  P  V  K  R  R  V  L  T  S  I  W  *  K  *  L  E  K  W  D  G  V  I  R  E  E  Q  *  S  S  L  N  F  I  G  Y  M  M  L  V  I  L  I  N  H </first_frame>
            <second_frame>  G  F  Y  L  S  K  K  F  Q  E  L  R  S  N  *  V  K  N  S  L  I  S  F  T  F  H  R  S  L  *  G  K  K  S  I  S  P  V  S  F  S  F  R  L  L  P  S  *  V  N  G  E  I  A  P  V  F  F  I  L  R  *  K  V  N  F  Y  L  W  *  F  L  F  F  H  M  F  G  E  L  L  V  R  *  R  G  G  F  *  L  L  F  G  E  N  N  W  K  N  G  M  G  L  S  G  K  S  S  S  L  L  *  I  L  L  D  T  *  C  *  S  Y  *  *  T   </second_frame>
            <third_frame>   G  F  I  S  L  K  S  S  K  S  C  A  A  T  K  L  R  I  L  *  S  P  S  P  F  T  G  H  F  E  V  R  N  R  F  L  R  S  P  S  P  F  D  C  S  R  L  K  *  T  V  K  L  L  L  F  S  S  S  S  G  E  R  *  T  S  T  F  G  N  F  S  F  F  I  C  S  V  S  F  *  S  G  E  E  E  G  F  D  F  Y  L  V  K  I  I  G  K  M  G  W  G  Y  Q  G  R  A  V  V  F  F  K  F  Y  W  I  H  D  V  S  H  I  D  K  P  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0080C09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="4" PGL_strand="-" PGL_start="83633" PGL_stop="72068"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="83633" e_stop="83317"/>
            <exon e_start="80475" e_stop="80379"/>
            <exon e_start="80290" e_stop="80208"/>
            <exon e_start="80081" e_stop="79947"/>
            <exon e_start="78210" e_stop="78079"/>
            <exon e_start="74340" e_stop="74192"/>
            <exon e_start="74102" e_stop="73961"/>
            <exon e_start="72690" e_stop="72605"/>
            <exon e_start="72456" e_stop="72068"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.944" e_score="1.000"/>
          <exon-intron don_prob="0.994" acc_prob="0.936" e_score="1.000"/>
          <exon-intron don_prob="0.846" acc_prob="0.995" e_score="1.000"/>
          <exon-intron don_prob="0.968" acc_prob="0.999" e_score="1.000"/>
          <exon-intron don_prob="0.993" acc_prob="0.000" e_score="1.000"/>
          <exon-intron don_prob="0.842" acc_prob="0.996" e_score="1.000"/>
          <exon-intron don_prob="0.992" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.792" acc_prob="0.648" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="1.000">
            <gDNA_exon_boundary e_start="83633" e_stop="83317" e_length="317"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.944">
            <gDNA_intron_boundary i_start="83316" i_stop="80476" i_length="2841"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="80475" e_stop="80379" e_length="97"/>
          </exon>
          <intron i_serial="2" don_prob="0.994" acc_prob="0.936">
            <gDNA_intron_boundary i_start="80378" i_stop="80291" i_length="88"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="80290" e_stop="80208" e_length="83"/>
          </exon>
          <intron i_serial="3" don_prob="0.846" acc_prob="0.995">
            <gDNA_intron_boundary i_start="80207" i_stop="80082" i_length="126"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="80081" e_stop="79947" e_length="135"/>
          </exon>
          <intron i_serial="4" don_prob="0.968" acc_prob="0.999">
            <gDNA_intron_boundary i_start="79946" i_stop="78211" i_length="1736"/>
          </intron>
          <exon e_serial="5" e_score="1.000">
            <gDNA_exon_boundary e_start="78210" e_stop="78079" e_length="132"/>
          </exon>
          <intron i_serial="5" don_prob="0.993" acc_prob="0.000">
            <gDNA_intron_boundary i_start="78078" i_stop="74341" i_length="3738"/>
          </intron>
          <exon e_serial="6" e_score="1.000">
            <gDNA_exon_boundary e_start="74340" e_stop="74192" e_length="149"/>
          </exon>
          <intron i_serial="6" don_prob="0.842" acc_prob="0.996">
            <gDNA_intron_boundary i_start="74191" i_stop="74103" i_length="89"/>
          </intron>
          <exon e_serial="7" e_score="1.000">
            <gDNA_exon_boundary e_start="74102" e_stop="73961" e_length="142"/>
          </exon>
          <intron i_serial="7" don_prob="0.992" acc_prob="0.917">
            <gDNA_intron_boundary i_start="73960" i_stop="72691" i_length="1270"/>
          </intron>
          <exon e_serial="8" e_score="1.000">
            <gDNA_exon_boundary e_start="72690" e_stop="72605" e_length="86"/>
          </exon>
          <intron i_serial="8" don_prob="0.792" acc_prob="0.648">
            <gDNA_intron_boundary i_start="72604" i_stop="72457" i_length="148"/>
          </intron>
          <exon e_serial="9" e_score="1.000">
            <gDNA_exon_boundary e_start="72456" e_stop="72068" e_length="389"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83633" stop="83317"/>
              <exon start="80475" stop="80379"/>
              <exon start="80290" stop="80208"/>
              <exon start="80081" stop="79947"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U591570" strand="+"/>
          </PGS_line>
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="83621" stop="83317"/>
              <exon start="80475" stop="80379"/>
              <exon start="80290" stop="80208"/>
              <exon start="80081" stop="79947"/>
              <exon start="78210" stop="78079"/>
              <exon start="74340" stop="74192"/>
              <exon start="74102" stop="73961"/>
              <exon start="72690" stop="72605"/>
              <exon start="72456" stop="72068"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U577772" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="1" gDNA_strand="-"/>
          <translation>
            <gDNA_template>GTGAACCAAAAAGGAAAAAAAAAAGAACAAAAAAAGTCGAAACCACGGGCAGCGCCGTATCAGTTCGGAGTCGGAGCCGGAGATCGGCCATGGCTGCCGCCGGTAATCCGTTATCCTCCGCTGTCACTTTCACAGAGCCGCCACCTGTTGCTCCTGGTACTGCTAATAAATCTTTGGATTTCTCTGCTGATTCAGTTCTACAGAGAATCGTACTGTCGCCTGATCAGCGTAGTCACTGTTTGGAAGCACTTAAAGCATTTAAGCAGAAAAGGTGTCACTCTCCGGACAAAATTGCCTCAGAGTTCTCCACTTTGCAG : GAAAATAGGCTGAAAGCTTCAGAAATGAAGAGTAGATGCTTGGTGGCTTTGGACAGCACAAACATCAGCAAGAATCGTTATACTGATGTCATCCCAT : TTGACAATAACAGGGTTGTTTTGGACCCATGTAAAGACTACAGACCGTCAGCTAAGGGATATATCAATGCAAGCTTTATAGAG : ATATCTGAAGGGGTGTCTCGGTTTGTTGCAACACAAGGTCCACTAGCACACACCTTTGAAGACTTCTGGGAAATGATAATCCAGCAACGCTGTCCTGTCATTGTGATGCTTACACGATTGGTTGACAATTACAAG : ATGGTGAAGTGTGGGGACTACTTTCAGGCAGAGGATGGGCCTAGAACATTTGGCAATATATGTATTGTGACAAAATATATGACGAGTGATGCCTCCTTAGTGTTGCGAACTCTGGAGGTGAACTATATTGAG : TCAGAAGAACCACCTTTGTGTGTTTTACACATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCCAGAGACACACTTGCTGTTCGTGAGATTCTGAAACGAACGTACAATTTGCCTCTTGGTCTTGGACCAATTGTAGTACACTGCAG : TGCTGGTATCGGTAGGACTGGAACATATTGCACAATCCATAATACCATCCAGAGAATACTGGGTGGAGATATGTCTGCTCTTGACATCGTTAATACAGTAGCCATTTTTAGGTCTCAGCGAATTGGGATGGTCCAGACCATG : GATCAATACCTTTTCTGCTATGATGCCATTATTGATGAACTGGAAGACCTAATTTCAGATGACAATGGAGAGAAGAATCTGTAGTG : TAGCGATGAGTTAACAAGATCTTGGATTCTTGCTCACAATGGGATATGAAACAGTAGTTATGCTGAAGACACAAATCAGTTGGCTCTACTACAGTTGCTTCGTCTCGCTCTCTTTGCTTGGGATCCCAAGTTGTTCAAGAGATACCTGTTGCTATTTCCATCGACCTGAGAACTCATTTGGATCCACTATTTGAAATGCAAAGTGGAATGCCGATGTAAGATGTATCCTTTGGCTGACTGAATATAAATGAAGTTACAATGTTTGCAGATCCAGAAAATTATATTTCTGGTCATTATGGTTTTGCCGAGTAAACACGCTCATTCAACACTAAACTAAGTGAAACTGCTCACTTAATGATTATTTAGCATTGATGTGGATTTGAAATGGT</gDNA_template>
            <first_frame> V  N  Q  K  G  K  K  K  E  Q  K  K  S  K  P  R  A  A  P  Y  Q  F  G  V  G  A  G  D  R  P  W  L  P  P  V  I  R  Y  P  P  L  S  L  S  Q  S  R  H  L  L  L  L  V  L  L  I  N  L  W  I  S  L  L  I  Q  F  Y  R  E  S  Y  C  R  L  I  S  V  V  T  V  W  K  H  L  K  H  L  S  R  K  G  V  T  L  R  T  K  L  P  Q  S  S  P  L  C  R :   K  I  G  *  K  L  Q  K  *  R  V  D  A  W  W  L  W  T  A  Q  T  S  A  R  I  V  I  L  M  S  S  H  :  L  T  I  T  G  L  F  W  T  H  V  K  T  T  D  R  Q  L  R  D  I  S  M  Q  A  L  *  R :   Y  L  K  G  C  L  G  L  L  Q  H  K  V  H  *  H  T  P  L  K  T  S  G  K  *  *  S  S  N  A  V  L  S  L  *  C  L  H  D  W  L  T  I  T  R :   W  *  S  V  G  T  T  F  R  Q  R  M  G  L  E  H  L  A  I  Y  V  L  *  Q  N  I  *  R  V  M  P  P  *  C  C  E  L  W  R  *  T  I  L  S :   Q  K  N  H  L  C  V  F  Y  T  F  S  I  L  N  G  L  T  M  E  F  P  E  T  H  L  L  F  V  R  F  *  N  E  R  T  I  C  L  L  V  L  D  Q  L  *  Y  T  A   : V  L  V  S  V  G  L  E  H  I  A  Q  S  I  I  P  S  R  E  Y  W  V  E  I  C  L  L  L  T  S  L  I  Q  *  P  F  L  G  L  S  E  L  G  W  S  R  P  W :   I  N  T  F  S  A  M  M  P  L  L  M  N  W  K  T  *  F  Q  M  T  M  E  R  R  I  C  S   : V  A  M  S  *  Q  D  L  G  F  L  L  T  M  G  Y  E  T  V  V  M  L  K  T  Q  I  S  W  L  Y  Y  S  C  F  V  S  L  S  L  L  G  I  P  S  C  S  R  D  T  C  C  Y  F  H  R  P  E  N  S  F  G  S  T  I  *  N  A  K  W  N  A  D  V  R  C  I  L  W  L  T  E  Y  K  *  S  Y  N  V  C  R  S  R  K  L  Y  F  W  S  L  W  F  C  R  V  N  T  L  I  Q  H  *  T  K  *  N  C  S  L  N  D  Y  L  A  L  M  W  I  *  N  G </first_frame>
            <second_frame>  *  T  K  K  E  K  K  K  N  K  K  S  R  N  H  G  Q  R  R  I  S  S  E  S  E  P  E  I  G  H  G  C  R  R  *  S  V  I  L  R  C  H  F  H  R  A  A  T  C  C  S  W  Y  C  *  *  I  F  G  F  L  C  *  F  S  S  T  E  N  R  T  V  A  *  S  A  *  S  L  F  G  S  T  *  S  I  *  A  E  K  V  S  L  S  G  Q  N  C  L  R  V  L  H  F  A   : G  K  *  A  E  S  F  R  N  E  E  *  M  L  G  G  F  G  Q  H  K  H  Q  Q  E  S  L  Y  *  C  H  P  I :   *  Q  *  Q  G  C  F  G  P  M  *  R  L  Q  T  V  S  *  G  I  Y  Q  C  K  L  Y  R   : D  I  *  R  G  V  S  V  C  C  N  T  R  S  T  S  T  H  L  *  R  L  L  G  N  D  N  P  A  T  L  S  C  H  C  D  A  Y  T  I  G  *  Q  L  Q   : D  G  E  V  W  G  L  L  S  G  R  G  W  A  *  N  I  W  Q  Y  M  Y  C  D  K  I  Y  D  E  *  C  L  L  S  V  A  N  S  G  G  E  L  Y  *   : V  R  R  T  T  F  V  C  F  T  H  S  V  S  *  M  A  *  P  W  S  S  Q  R  H  T  C  C  S  *  D  S  E  T  N  V  Q  F  A  S  W  S  W  T  N  C  S  T  L  Q  :  C  W  Y  R  *  D  W  N  I  L  H  N  P  *  Y  H  P  E  N  T  G  W  R  Y  V  C  S  *  H  R  *  Y  S  S  H  F  *  V  S  A  N  W  D  G  P  D  H   : G  S  I  P  F  L  L  *  C  H  Y  *  *  T  G  R  P  N  F  R  *  Q  W  R  E  E  S  V  V  :  *  R  *  V  N  K  I  L  D  S  C  S  Q  W  D  M  K  Q  *  L  C  *  R  H  K  S  V  G  S  T  T  V  A  S  S  R  S  L  C  L  G  S  Q  V  V  Q  E  I  P  V  A  I  S  I  D  L  R  T  H  L  D  P  L  F  E  M  Q  S  G  M  P  M  *  D  V  S  F  G  *  L  N  I  N  E  V  T  M  F  A  D  P  E  N  Y  I  S  G  H  Y  G  F  A  E  *  T  R  S  F  N  T  K  L  S  E  T  A  H  L  M  I  I  *  H  *  C  G  F  E  M   </second_frame>
            <third_frame>   E  P  K  R  K  K  K  R  T  K  K  V  E  T  T  G  S  A  V  S  V  R  S  R  S  R  R  S  A  M  A  A  A  G  N  P  L  S  S  A  V  T  F  T  E  P  P  P  V  A  P  G  T  A  N  K  S  L  D  F  S  A  D  S  V  L  Q  R  I  V  L  S  P  D  Q  R  S  H  C  L  E  A  L  K  A  F  K  Q  K  R  C  H  S  P  D  K  I  A  S  E  F  S  T  L  Q  :  E  N  R  L  K  A  S  E  M  K  S  R  C  L  V  A  L  D  S  T  N  I  S  K  N  R  Y  T  D  V  I  P   : F  D  N  N  R  V  V  L  D  P  C  K  D  Y  R  P  S  A  K  G  Y  I  N  A  S  F  I  E  :  I  S  E  G  V  S  R  F  V  A  T  Q  G  P  L  A  H  T  F  E  D  F  W  E  M  I  I  Q  Q  R  C  P  V  I  V  M  L  T  R  L  V  D  N  Y  K  :  M  V  K  C  G  D  Y  F  Q  A  E  D  G  P  R  T  F  G  N  I  C  I  V  T  K  Y  M  T  S  D  A  S  L  V  L  R  T  L  E  V  N  Y  I  E  :  S  E  E  P  P  L  C  V  L  H  I  Q  Y  P  E  W  P  D  H  G  V  P  R  D  T  L  A  V  R  E  I  L  K  R  T  Y  N  L  P  L  G  L  G  P  I  V  V  H  C  S :   A  G  I  G  R  T  G  T  Y  C  T  I  H  N  T  I  Q  R  I  L  G  G  D  M  S  A  L  D  I  V  N  T  V  A  I  F  R  S  Q  R  I  G  M  V  Q  T  M  :  D  Q  Y  L  F  C  Y  D  A  I  I  D  E  L  E  D  L  I  S  D  D  N  G  E  K  N  L  *  C :   S  D  E  L  T  R  S  W  I  L  A  H  N  G  I  *  N  S  S  Y  A  E  D  T  N  Q  L  A  L  L  Q  L  L  R  L  A  L  F  A  W  D  P  K  L  F  K  R  Y  L  L  L  F  P  S  T  *  E  L  I  W  I  H  Y  L  K  C  K  V  E  C  R  C  K  M  Y  P  L  A  D  *  I  *  M  K  L  Q  C  L  Q  I  Q  K  I  I  F  L  V  I  M  V  L  P  S  K  H  A  H  S  T  L  N  *  V  K  L  L  T  *  *  L  F  S  I  D  V  D  L  K  W  </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0080C09.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="1" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="83631" stop="83317"/>
                    <exon start="80475" stop="80379"/>
                    <exon start="80290" stop="80208"/>
                    <exon start="80081" stop="79947"/>
                    <exon start="78210" stop="78079"/>
                    <exon start="74340" stop="74192"/>
                    <exon start="74102" stop="73961"/>
                    <exon start="72690" stop="72607"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>1134</number_coding_nucleotides>
                  <number_encoded_amino_acids>378</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>EPKRKKKRTKKVETTGSAVSVRSRSRRSAMAAAGNPLSSAVTFTEPPPVAPGTANKSLDFSADSVLQRIVLSPDQRSHCLEALKAFKQKRCHSPDKIASEFSTLQENRLKASEMKSRCLVALDSTNISKNRYTDVIPFDNNRVVLDPCKDYRPSAKGYINASFIEISEGVSRFVATQGPLAHTFEDFWEMIIQQRCPVIVMLTRLVDNYKMVKCGDYFQAEDGPRTFGNICIVTKYMTSDASLVLRTLEVNYIESEEPPLCVLHIQYPEWPDHGVPRDTLAVREILKRTYNLPLGLGPIVVHCSAGIGRTGTYCTIHNTIQRILGGDMSALDIVNTVAIFRSQRIGMVQTMDQYLFCYDAIIDELEDLISDDNGEKNL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
      <AGS_information>
        <AGS_line AGS_serial="2">
          <exon_coordinates>
            <exon e_start="78126" e_stop="78079"/>
            <exon e_start="74340" e_stop="73961"/>
            <exon e_start="72690" e_stop="72605"/>
            <exon e_start="72456" e_stop="72397"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-intron don_prob="0.993" acc_prob="0.000" e_score="0.917"/>
          <exon-intron don_prob="0.992" acc_prob="0.917" e_score="1.000"/>
          <exon-intron don_prob="0.792" acc_prob="0.648" e_score="1.000"/>
          <exon-only e_score="1.000"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.917">
            <gDNA_exon_boundary e_start="78126" e_stop="78079" e_length="48"/>
          </exon>
          <intron i_serial="1" don_prob="0.993" acc_prob="0.000">
            <gDNA_intron_boundary i_start="78078" i_stop="74341" i_length="3738"/>
          </intron>
          <exon e_serial="2" e_score="1.000">
            <gDNA_exon_boundary e_start="74340" e_stop="73961" e_length="380"/>
          </exon>
          <intron i_serial="2" don_prob="0.992" acc_prob="0.917">
            <gDNA_intron_boundary i_start="73960" i_stop="72691" i_length="1270"/>
          </intron>
          <exon e_serial="3" e_score="1.000">
            <gDNA_exon_boundary e_start="72690" e_stop="72605" e_length="86"/>
          </exon>
          <intron i_serial="3" don_prob="0.792" acc_prob="0.648">
            <gDNA_intron_boundary i_start="72604" i_stop="72457" i_length="148"/>
          </intron>
          <exon e_serial="4" e_score="1.000">
            <gDNA_exon_boundary e_start="72456" e_stop="72397" e_length="60"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="78126" stop="78079"/>
              <exon start="74340" stop="73961"/>
              <exon start="72690" stop="72605"/>
              <exon start="72456" stop="72397"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U590631" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="4" AGS_serial="2" gDNA_strand="-"/>
          <translation>
            <gDNA_template>AGTGATGCCTCCTTAGTGTTGCGAACTCTGGAGGTGAACTATATTGAG : TCAGAAGAACCACCTTTGTGTGTTTTACACATTCAGTATCCTGAATGGCCTGACCATGGAGTTCCCAGAGACACACTTGCTGTTCGTGAGATTCTGAAACGAACGTACAATTTGCCTCTTGGTCTTGGACCAATTGTAGTACACTGCAGGTTTCTCTGATCACTGACCCTGTAAATGTGCTTTTTGAATTCTGTTATTTAATTGTTTGTGTAGCTTGATGCCTCATTCTCTTGTACAGTGCTGGTATCGGTAGGACTGGAACATATTGCACAATCCATAATACCATCCAGAGAATACTGGGTGGAGATATGTCTGCTCTTGACATCGTTAATACAGTAGCCATTTTTAGGTCTCAGCGAATTGGGATGGTCCAGACCATG : GATCAATACCTTTTCTGCTATGATGCCATTATTGATGAACTGGAAGACCTAATTTCAGATGACAATGGAGAGAAGAATCTGTAGTG : TAGCGATGAGTTAACAAGATCTTGGATTCTTGCTCACAATGGGATATGAAACAGTAGTTA</gDNA_template>
            <first_frame> S  D  A  S  L  V  L  R  T  L  E  V  N  Y  I  E  :  S  E  E  P  P  L  C  V  L  H  I  Q  Y  P  E  W  P  D  H  G  V  P  R  D  T  L  A  V  R  E  I  L  K  R  T  Y  N  L  P  L  G  L  G  P  I  V  V  H  C  R  F  L  *  S  L  T  L  *  M  C  F  L  N  S  V  I  *  L  F  V  *  L  D  A  S  F  S  C  T  V  L  V  S  V  G  L  E  H  I  A  Q  S  I  I  P  S  R  E  Y  W  V  E  I  C  L  L  L  T  S  L  I  Q  *  P  F  L  G  L  S  E  L  G  W  S  R  P  W :   I  N  T  F  S  A  M  M  P  L  L  M  N  W  K  T  *  F  Q  M  T  M  E  R  R  I  C  S   : V  A  M  S  *  Q  D  L  G  F  L  L  T  M  G  Y  E  T  V  V  </first_frame>
            <second_frame>  V  M  P  P  *  C  C  E  L  W  R  *  T  I  L  S :   Q  K  N  H  L  C  V  F  Y  T  F  S  I  L  N  G  L  T  M  E  F  P  E  T  H  L  L  F  V  R  F  *  N  E  R  T  I  C  L  L  V  L  D  Q  L  *  Y  T  A  G  F  S  D  H  *  P  C  K  C  A  F  *  I  L  L  F  N  C  L  C  S  L  M  P  H  S  L  V  Q  C  W  Y  R  *  D  W  N  I  L  H  N  P  *  Y  H  P  E  N  T  G  W  R  Y  V  C  S  *  H  R  *  Y  S  S  H  F  *  V  S  A  N  W  D  G  P  D  H   : G  S  I  P  F  L  L  *  C  H  Y  *  *  T  G  R  P  N  F  R  *  Q  W  R  E  E  S  V  V  :  *  R  *  V  N  K  I  L  D  S  C  S  Q  W  D  M  K  Q  *  L </second_frame>
            <third_frame>   *  C  L  L  S  V  A  N  S  G  G  E  L  Y  *   : V  R  R  T  T  F  V  C  F  T  H  S  V  S  *  M  A  *  P  W  S  S  Q  R  H  T  C  C  S  *  D  S  E  T  N  V  Q  F  A  S  W  S  W  T  N  C  S  T  L  Q  V  S  L  I  T  D  P  V  N  V  L  F  E  F  C  Y  L  I  V  C  V  A  *  C  L  I  L  L  Y  S  A  G  I  G  R  T  G  T  Y  C  T  I  H  N  T  I  Q  R  I  L  G  G  D  M  S  A  L  D  I  V  N  T  V  A  I  F  R  S  Q  R  I  G  M  V  Q  T  M  :  D  Q  Y  L  F  C  Y  D  A  I  I  D  E  L  E  D  L  I  S  D  D  N  G  E  K  N  L  *  C :   S  D  E  L  T  R  S  W  I  L  A  H  N  G  I  *  N  S  S   </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0080C09.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="1"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="74122" stop="73961"/>
                    <exon start="72690" stop="72607"/>
                  </exon_boundaries>
                  <frame>2</frame>
                  <number_coding_nucleotides>243</number_coding_nucleotides>
                  <number_encoded_amino_acids>81</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>CLILLYSAGIGRTGTYCTIHNTIQRILGGDMSALDIVNTVAIFRSQRIGMVQTMDQYLFCYDAIIDELEDLISDDNGEKNL*</predicted_protein_sequence>
            </orf_entry>
            <orf_entry>
              <id_line>
                <gDNA id="C00HBa0080C09.1" strand="-"/>
                <serials PGL_serial="4" AGS_serial="2" PPS_serial="2"/>
                <orf_info>
                  <exon_boundaries>
                    <exon start="78126" stop="78079"/>
                    <exon start="74340" stop="74182"/>
                  </exon_boundaries>
                  <frame>0</frame>
                  <number_coding_nucleotides>204</number_coding_nucleotides>
                  <number_encoded_amino_acids>68</number_encoded_amino_acids>
                </orf_info>
              </id_line>
              <predicted_protein_sequence>SDASLVLRTLEVNYIESEEPPLCVLHIQYPEWPDHGVPRDTLAVREILKRTYNLPLGLGPIVVHCRFL*</predicted_protein_sequence>
            </orf_entry>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
    <predicted_gene_location>
      <PGL_line PGL_serial="5" PGL_strand="+" PGL_start="113747" PGL_stop="114087"/>
      <AGS_information>
        <AGS_line AGS_serial="1">
          <exon_coordinates>
            <exon e_start="113747" e_stop="114087"/>
          </exon_coordinates>
        </AGS_line>
        <SCR_line>
          <exon-only e_score="0.903"/>
        </SCR_line>
        <exon-intron_info xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/exon-intron_info/">
          <exon e_serial="1" e_score="0.903">
            <gDNA_exon_boundary e_start="113747" e_stop="114087" e_length="341"/>
          </exon>
        </exon-intron_info>
        <supporting_evidence xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/supporting_evidence/">
          <PGS_line>
            <gDNA_exon_coordinates>
              <exon start="113747" stop="114087"/>
            </gDNA_exon_coordinates>
            <referenceDNA id="SGN-U567689" strand="+"/>
          </PGS_line>
        </supporting_evidence>
        <three_phase_translation xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/">
          <description PGL_serial="5" AGS_serial="1" gDNA_strand="+"/>
          <translation>
            <gDNA_template>GAAAAACCATTTTGAGAGCAAAGTGAGGTATTCCATAGACTATAGAAGAAAATAGTCTGTGAAGAAAAATAGAGTGTGAGCGATATTTTAGTAAGACGGAAACCAAAAGAGTGTTGTTCCTTTTGAGTGTGTAGTAGTCACTTTGAGTACTGTATACGTGACTACATAGTATAAATTCCTTACTATAGTAATGTCAGTTGCTCCTCTTGGCTCGTGATTTTTTCCCTTATTCAGAAGGATTTCCACATAAAATTCTTGGTGTCGTTATTTTCCTATTTTATTTACATTACTTTTACCATATTTACTTTTGTGTTTGTCAGCATTTTCCCAACACACCCTTC</gDNA_template>
            <first_frame> E  K  P  F  *  E  Q  S  E  V  F  H  R  L  *  K  K  I  V  C  E  E  K  *  S  V  S  D  I  L  V  R  R  K  P  K  E  C  C  S  F  *  V  C  S  S  H  F  E  Y  C  I  R  D  Y  I  V  *  I  P  Y  Y  S  N  V  S  C  S  S  W  L  V  I  F  S  L  I  Q  K  D  F  H  I  K  F  L  V  S  L  F  S  Y  F  I  Y  I  T  F  T  I  F  T  F  V  F  V  S  I  F  P  T  H  P   </first_frame>
            <second_frame>  K  N  H  F  E  S  K  V  R  Y  S  I  D  Y  R  R  K  *  S  V  K  K  N  R  V  *  A  I  F  *  *  D  G  N  Q  K  S  V  V  P  F  E  C  V  V  V  T  L  S  T  V  Y  V  T  T  *  Y  K  F  L  T  I  V  M  S  V  A  P  L  G  S  *  F  F  P  L  F  R  R  I  S  T  *  N  S  W  C  R  Y  F  P  I  L  F  T  L  L  L  P  Y  L  L  L  C  L  S  A  F  S  Q  H  T  L  </second_frame>
            <third_frame>   K  T  I  L  R  A  K  *  G  I  P  *  T  I  E  E  N  S  L  *  R  K  I  E  C  E  R  Y  F  S  K  T  E  T  K  R  V  L  F  L  L  S  V  *  *  S  L  *  V  L  Y  T  *  L  H  S  I  N  S  L  L  *  *  C  Q  L  L  L  L  A  R  D  F  F  P  Y  S  E  G  F  P  H  K  I  L  G  V  V  I  F  L  F  Y  L  H  Y  F  Y  H  I  Y  F  C  V  C  Q  H  F  P  N  T  P  F </third_frame>
          </translation>
          <probable_ORFs xmlns="http://www.genomethreader.org/GTH_output/PGL_module/predicted_gene_location/AGS_information/three_phase_translation/probable_ORFs/">
            <none gDNA_id="C00HBa0080C09.1"/>
          </probable_ORFs>
        </three_phase_translation>
      </AGS_information>
    </predicted_gene_location>
  </PGL_module>
</GTH_output>
<!--
$ general statistics:
$ 60 chains have been computed
$ 
$ memory statistics:
$ 15728 bytes spliced alignments in total
$ 8 spliced alignments have been stored
$ 1966 bytes was the average size of a spliced alignment
$ 10832 bytes predicted gene locations in total
$ 5 predicted gene locations have been stored
$ 2166 bytes was the average size of a predicted gene location
$ 0 megabytes was the average size of the backtrace matrix
$ 68 backtrace matrices have been allocated
$ 
$ date finished: 2009-12-01 05:19:08
-->
